Query 014798
Match_columns 418
No_of_seqs 505 out of 3050
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 8.4E-46 2.9E-50 378.4 19.5 197 219-416 136-336 (405)
2 4b4t_I 26S protease regulatory 100.0 8.7E-47 3E-51 387.5 6.5 198 218-416 169-370 (437)
3 4b4t_L 26S protease subunit RP 100.0 7.7E-44 2.6E-48 367.9 19.1 196 220-416 170-369 (437)
4 4b4t_M 26S protease regulatory 100.0 4.7E-44 1.6E-48 369.3 16.9 197 219-416 169-369 (434)
5 4b4t_H 26S protease regulatory 100.0 9E-44 3.1E-48 368.1 18.5 198 218-416 196-397 (467)
6 4b4t_K 26S protease regulatory 100.0 1.8E-43 6E-48 364.6 19.1 198 219-416 160-361 (428)
7 3cf2_A TER ATPase, transitiona 100.0 2.9E-39 9.9E-44 354.7 12.8 192 224-416 470-665 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2E-37 6.9E-42 340.1 16.2 189 224-416 197-389 (806)
9 2ce7_A Cell division protein F 100.0 6.5E-36 2.2E-40 312.1 18.1 197 219-416 3-203 (476)
10 2dhr_A FTSH; AAA+ protein, hex 100.0 5.5E-36 1.9E-40 314.3 16.5 208 207-416 8-218 (499)
11 1lv7_A FTSH; alpha/beta domain 100.0 4.8E-33 1.6E-37 265.0 18.4 194 221-415 2-198 (257)
12 3cf0_A Transitional endoplasmi 100.0 4.6E-33 1.6E-37 273.0 18.3 191 224-415 8-202 (301)
13 2x8a_A Nuclear valosin-contain 100.0 2.8E-32 9.6E-37 265.2 13.5 186 225-414 4-193 (274)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.4E-31 4.8E-36 253.5 16.3 189 226-415 1-193 (262)
15 3h4m_A Proteasome-activating n 100.0 8.1E-31 2.8E-35 252.2 17.1 193 222-415 8-204 (285)
16 1xwi_A SKD1 protein; VPS4B, AA 100.0 9.1E-31 3.1E-35 259.7 17.9 186 224-416 5-196 (322)
17 3eie_A Vacuolar protein sortin 100.0 9.5E-31 3.3E-35 258.6 16.5 189 221-416 8-201 (322)
18 1iy2_A ATP-dependent metallopr 100.0 5.6E-30 1.9E-34 247.4 20.5 205 209-415 19-226 (278)
19 1ixz_A ATP-dependent metallopr 100.0 4.3E-30 1.5E-34 244.2 19.2 192 223-415 8-202 (254)
20 2qp9_X Vacuolar protein sortin 100.0 1.7E-29 5.9E-34 253.7 16.9 188 222-416 42-234 (355)
21 2r62_A Cell division protease 100.0 5.8E-31 2E-35 251.4 5.2 191 224-415 4-199 (268)
22 3hu3_A Transitional endoplasmi 100.0 3.6E-29 1.2E-33 262.1 17.5 187 226-416 199-389 (489)
23 2zan_A Vacuolar protein sortin 100.0 1.4E-28 4.6E-33 254.4 17.4 188 222-416 125-318 (444)
24 1ypw_A Transitional endoplasmi 100.0 5.3E-30 1.8E-34 282.7 0.7 193 223-416 469-665 (806)
25 3t15_A Ribulose bisphosphate c 99.9 1.1E-27 3.7E-32 234.4 11.0 154 259-414 31-200 (293)
26 3d8b_A Fidgetin-like protein 1 99.9 7.9E-27 2.7E-31 234.2 16.4 184 224-414 77-266 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.9 9.5E-27 3.3E-31 225.4 16.1 187 222-415 12-205 (297)
28 3vfd_A Spastin; ATPase, microt 99.9 1.2E-26 3.9E-31 235.0 16.3 188 221-415 105-298 (389)
29 1ypw_A Transitional endoplasmi 99.9 1.6E-25 5.5E-30 247.0 17.4 189 224-416 197-389 (806)
30 2c9o_A RUVB-like 1; hexameric 99.9 1.5E-24 5E-29 224.5 4.6 169 225-402 31-224 (456)
31 1g41_A Heat shock protein HSLU 99.8 6.1E-22 2.1E-26 204.8 5.4 165 231-408 15-188 (444)
32 3syl_A Protein CBBX; photosynt 99.8 4.9E-21 1.7E-25 185.7 10.4 171 232-415 32-220 (309)
33 1d2n_A N-ethylmaleimide-sensit 99.8 2.2E-19 7.5E-24 172.1 13.3 170 229-413 31-210 (272)
34 3pfi_A Holliday junction ATP-d 99.8 3.3E-18 1.1E-22 168.3 16.7 164 219-414 17-199 (338)
35 3hws_A ATP-dependent CLP prote 99.8 1.7E-18 5.9E-23 173.1 14.5 132 232-363 16-156 (363)
36 1ofh_A ATP-dependent HSL prote 99.8 1.5E-18 5E-23 167.3 12.3 174 231-409 15-212 (310)
37 3m6a_A ATP-dependent protease 99.7 1.6E-18 5.4E-23 183.5 8.2 166 226-412 76-266 (543)
38 3u61_B DNA polymerase accessor 99.7 1.5E-17 5E-22 162.9 13.7 157 218-411 13-177 (324)
39 1jbk_A CLPB protein; beta barr 99.7 5.4E-18 1.8E-22 149.9 9.0 157 226-408 17-194 (195)
40 1hqc_A RUVB; extended AAA-ATPa 99.7 3.5E-17 1.2E-21 159.3 14.8 163 224-414 5-183 (324)
41 3uk6_A RUVB-like 2; hexameric 99.7 8.3E-17 2.8E-21 159.6 14.6 163 226-414 39-274 (368)
42 2p65_A Hypothetical protein PF 99.7 3E-17 1E-21 145.4 7.1 152 226-402 17-186 (187)
43 1um8_A ATP-dependent CLP prote 99.7 3.6E-16 1.2E-20 156.8 14.1 146 232-377 22-210 (376)
44 1l8q_A Chromosomal replication 99.7 5.2E-16 1.8E-20 152.2 13.6 164 225-414 5-181 (324)
45 1sxj_A Activator 1 95 kDa subu 99.6 1.9E-16 6.4E-21 166.3 8.8 177 216-412 24-222 (516)
46 2chg_A Replication factor C sm 99.6 2.6E-15 9E-20 135.6 14.6 156 221-413 7-175 (226)
47 4fcw_A Chaperone protein CLPB; 99.6 1.1E-15 3.9E-20 147.8 11.7 164 231-414 17-231 (311)
48 3pxi_A Negative regulator of g 99.6 2.1E-15 7.3E-20 164.8 14.2 158 231-413 491-676 (758)
49 3pxg_A Negative regulator of g 99.6 8.7E-16 3E-20 159.5 10.0 150 224-414 173-340 (468)
50 3n70_A Transport activator; si 99.6 3.5E-16 1.2E-20 136.9 5.3 112 232-379 2-116 (145)
51 2v1u_A Cell division control p 99.6 3.5E-15 1.2E-19 147.3 13.2 168 227-413 15-215 (387)
52 1r6b_X CLPA protein; AAA+, N-t 99.6 3.2E-15 1.1E-19 163.1 13.0 162 231-413 458-667 (758)
53 3pvs_A Replication-associated 99.6 3.6E-15 1.2E-19 154.4 12.4 152 223-414 18-180 (447)
54 3co5_A Putative two-component 99.6 1.9E-15 6.4E-20 132.1 8.6 131 232-400 5-141 (143)
55 2z4s_A Chromosomal replication 99.6 3.6E-15 1.2E-19 153.8 11.8 165 225-413 99-277 (440)
56 1qvr_A CLPB protein; coiled co 99.6 2.4E-15 8.3E-20 166.7 11.2 162 226-413 165-346 (854)
57 2r44_A Uncharacterized protein 99.6 4.9E-15 1.7E-19 145.5 11.5 154 228-414 24-200 (331)
58 1njg_A DNA polymerase III subu 99.6 1.6E-14 5.5E-19 131.5 13.9 166 219-414 11-200 (250)
59 2qby_B CDC6 homolog 3, cell di 99.6 1.2E-14 4.1E-19 144.2 13.8 159 228-413 17-211 (384)
60 3pxi_A Negative regulator of g 99.6 3.5E-15 1.2E-19 163.1 10.2 149 225-414 174-340 (758)
61 1g8p_A Magnesium-chelatase 38 99.6 2E-14 6.7E-19 141.1 14.5 159 225-411 18-231 (350)
62 2chq_A Replication factor C sm 99.6 5E-15 1.7E-19 142.9 9.8 158 220-414 6-176 (319)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 3.5E-15 1.2E-19 162.8 9.5 163 226-413 181-363 (758)
64 1iqp_A RFCS; clamp loader, ext 99.5 3.8E-14 1.3E-18 137.1 14.0 158 219-413 13-183 (327)
65 2bjv_A PSP operon transcriptio 99.5 1.8E-14 6.1E-19 137.2 11.1 151 228-404 3-182 (265)
66 3te6_A Regulatory protein SIR3 99.5 1.3E-14 4.6E-19 144.1 10.5 157 233-414 22-213 (318)
67 1sxj_D Activator 1 41 kDa subu 99.5 1.7E-14 6E-19 141.4 11.1 159 218-413 24-206 (353)
68 3cmw_A Protein RECA, recombina 99.5 6.8E-15 2.3E-19 171.7 8.5 153 225-378 1014-1217(1706)
69 1sxj_B Activator 1 37 kDa subu 99.5 3.7E-14 1.3E-18 136.9 11.3 157 220-413 10-180 (323)
70 3bos_A Putative DNA replicatio 99.5 3.5E-14 1.2E-18 130.8 10.6 152 226-414 23-189 (242)
71 2qby_A CDC6 homolog 1, cell di 99.5 8.4E-14 2.9E-18 137.1 13.4 166 227-413 16-211 (386)
72 1jr3_A DNA polymerase III subu 99.5 2E-13 6.7E-18 134.9 14.7 162 222-413 7-192 (373)
73 1sxj_E Activator 1 40 kDa subu 99.5 3E-13 1E-17 133.2 14.2 159 220-413 3-207 (354)
74 1ojl_A Transcriptional regulat 99.5 2.9E-13 1E-17 132.9 11.9 145 231-404 2-178 (304)
75 1in4_A RUVB, holliday junction 99.4 1.5E-12 5E-17 129.1 16.7 159 223-413 17-194 (334)
76 1fnn_A CDC6P, cell division co 99.4 5.4E-13 1.9E-17 132.1 13.4 163 227-413 13-207 (389)
77 1qvr_A CLPB protein; coiled co 99.4 1.5E-13 5.2E-18 152.2 9.3 165 230-413 557-771 (854)
78 1sxj_C Activator 1 40 kDa subu 99.4 1.1E-12 3.7E-17 129.7 14.3 157 219-412 13-182 (340)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 5E-13 1.7E-17 140.2 7.9 151 231-412 22-196 (500)
80 3ec2_A DNA replication protein 99.4 4.3E-12 1.5E-16 113.8 12.1 135 225-380 4-144 (180)
81 3f9v_A Minichromosome maintena 99.3 1.5E-13 5E-18 147.1 -0.7 126 265-410 328-488 (595)
82 1a5t_A Delta prime, HOLB; zinc 99.2 8.3E-11 2.8E-15 116.5 14.6 126 263-411 23-179 (334)
83 2gno_A DNA polymerase III, gam 99.2 5.7E-11 2E-15 117.0 13.2 138 235-410 1-150 (305)
84 2w58_A DNAI, primosome compone 99.2 4E-11 1.4E-15 109.1 9.5 104 226-336 20-128 (202)
85 4akg_A Glutathione S-transfera 99.2 5.6E-11 1.9E-15 144.1 13.1 133 265-413 1268-1432(2695)
86 1w5s_A Origin recognition comp 99.2 1.4E-10 4.8E-15 115.7 13.3 169 228-412 19-228 (412)
87 3k1j_A LON protease, ATP-depen 99.0 5.9E-10 2E-14 119.0 10.5 53 223-289 33-85 (604)
88 2qgz_A Helicase loader, putati 99.0 4.2E-10 1.4E-14 110.7 6.5 101 227-335 120-226 (308)
89 2kjq_A DNAA-related protein; s 99.0 6E-10 2E-14 98.3 6.3 103 265-398 37-145 (149)
90 2vhj_A Ntpase P4, P4; non- hyd 99.0 1.5E-10 5E-15 115.2 2.5 117 265-386 124-242 (331)
91 1ny5_A Transcriptional regulat 98.9 7.8E-09 2.7E-13 104.6 11.7 126 230-379 136-282 (387)
92 2r2a_A Uncharacterized protein 98.7 1.1E-08 3.9E-13 94.7 6.7 124 266-402 7-153 (199)
93 2fna_A Conserved hypothetical 98.7 2.2E-07 7.4E-12 90.1 15.9 158 226-412 8-222 (357)
94 1svm_A Large T antigen; AAA+ f 98.7 7.4E-09 2.5E-13 105.0 5.2 116 260-398 165-282 (377)
95 3dzd_A Transcriptional regulat 98.7 6.6E-08 2.3E-12 97.3 12.1 124 231-378 129-272 (368)
96 3cmu_A Protein RECA, recombina 98.7 3.3E-08 1.1E-12 117.2 10.7 117 260-377 1423-1562(2050)
97 2qen_A Walker-type ATPase; unk 98.7 5.4E-07 1.9E-11 87.2 16.8 58 227-300 8-65 (350)
98 4akg_A Glutathione S-transfera 98.6 9.6E-08 3.3E-12 116.3 12.5 125 265-411 646-789 (2695)
99 3f8t_A Predicted ATPase involv 98.5 4.8E-08 1.6E-12 101.6 4.2 142 233-402 215-381 (506)
100 1tue_A Replication protein E1; 98.2 4E-07 1.4E-11 85.2 3.3 29 265-293 59-87 (212)
101 1ye8_A Protein THEP1, hypothet 98.2 1.8E-06 6.2E-11 78.1 7.1 26 267-292 3-28 (178)
102 3vkg_A Dynein heavy chain, cyt 98.2 7.6E-06 2.6E-10 100.8 14.2 129 265-409 1305-1466(3245)
103 2cvh_A DNA repair and recombin 98.2 1.8E-06 6.2E-11 78.4 6.7 36 264-299 20-55 (220)
104 2ehv_A Hypothetical protein PH 98.2 7.9E-06 2.7E-10 75.5 10.0 110 264-382 30-185 (251)
105 2w0m_A SSO2452; RECA, SSPF, un 98.1 9.6E-06 3.3E-10 73.8 10.4 34 264-297 23-59 (235)
106 1n0w_A DNA repair protein RAD5 98.1 3.7E-06 1.2E-10 77.6 7.1 116 264-380 24-175 (243)
107 3vkg_A Dynein heavy chain, cyt 98.1 1.1E-05 3.8E-10 99.4 11.8 126 265-412 605-750 (3245)
108 3upu_A ATP-dependent DNA helic 98.0 1.8E-05 6.1E-10 81.4 10.2 106 218-335 11-140 (459)
109 2zr9_A Protein RECA, recombina 98.0 3.8E-06 1.3E-10 84.0 4.7 73 265-337 62-153 (349)
110 2z43_A DNA repair and recombin 98.0 7.1E-06 2.4E-10 80.7 6.5 115 262-377 105-256 (324)
111 3hr8_A Protein RECA; alpha and 98.0 8.9E-06 3.1E-10 81.7 7.1 113 265-377 62-196 (356)
112 4a74_A DNA repair and recombin 98.0 9.2E-06 3.1E-10 74.1 6.4 23 266-288 27-49 (231)
113 1xp8_A RECA protein, recombina 98.0 1.5E-05 5.2E-10 80.3 8.3 117 261-377 71-209 (366)
114 1qhx_A CPT, protein (chloramph 97.9 1.9E-05 6.4E-10 69.6 7.7 40 265-304 4-43 (178)
115 3cmu_A Protein RECA, recombina 97.9 1.6E-05 5.5E-10 94.6 8.2 117 261-377 729-867 (2050)
116 1u0j_A DNA replication protein 97.9 7.6E-06 2.6E-10 79.2 4.5 25 265-289 105-129 (267)
117 1v5w_A DMC1, meiotic recombina 97.8 2.2E-05 7.4E-10 78.0 7.1 113 265-378 123-273 (343)
118 1u94_A RECA protein, recombina 97.8 2.7E-05 9.3E-10 78.1 7.6 77 261-337 60-155 (356)
119 1pzn_A RAD51, DNA repair and r 97.8 2.9E-05 1E-09 77.4 7.7 116 265-381 132-288 (349)
120 2dr3_A UPF0273 protein PH0284; 97.8 7.9E-05 2.7E-09 68.5 9.7 36 263-298 22-60 (247)
121 3lda_A DNA repair protein RAD5 97.7 2.7E-05 9.3E-10 79.3 5.7 117 261-378 175-327 (400)
122 1gvn_B Zeta; postsegregational 97.7 7.4E-05 2.5E-09 72.4 7.8 60 237-300 10-69 (287)
123 2i1q_A DNA repair and recombin 97.7 3.5E-05 1.2E-09 75.3 5.2 112 265-377 99-257 (322)
124 3cmw_A Protein RECA, recombina 97.7 2.5E-05 8.7E-10 91.9 4.9 78 260-337 728-824 (1706)
125 4gp7_A Metallophosphoesterase; 97.6 3.3E-05 1.1E-09 68.6 4.4 68 313-382 91-162 (171)
126 2p5t_B PEZT; postsegregational 97.6 0.00014 4.6E-09 68.7 8.4 39 262-300 30-68 (253)
127 1nlf_A Regulatory protein REPA 97.6 7.2E-05 2.5E-09 71.4 6.3 24 265-288 31-54 (279)
128 3io5_A Recombination and repai 97.6 6.4E-05 2.2E-09 74.6 5.5 112 266-377 30-170 (333)
129 3trf_A Shikimate kinase, SK; a 97.5 3.5E-05 1.2E-09 68.4 3.2 38 264-303 5-42 (185)
130 2zts_A Putative uncharacterize 97.5 7.6E-05 2.6E-09 68.7 5.6 37 262-298 28-68 (251)
131 3jvv_A Twitching mobility prot 97.5 5.6E-05 1.9E-09 75.8 4.5 95 266-381 125-233 (356)
132 2orw_A Thymidine kinase; TMTK, 97.5 4.9E-05 1.7E-09 68.9 3.3 68 266-335 5-88 (184)
133 2eyu_A Twitching motility prot 97.5 0.00012 4.2E-09 70.1 6.2 67 266-333 27-108 (261)
134 3vaa_A Shikimate kinase, SK; s 97.5 5E-05 1.7E-09 68.8 3.3 31 265-295 26-56 (199)
135 1cr0_A DNA primase/helicase; R 97.5 0.00011 3.6E-09 70.7 5.7 32 265-296 36-71 (296)
136 2rhm_A Putative kinase; P-loop 97.4 5E-05 1.7E-09 67.5 2.8 33 263-295 4-36 (193)
137 2pt7_A CAG-ALFA; ATPase, prote 97.4 0.00012 4.2E-09 72.4 5.6 69 266-334 173-251 (330)
138 1zp6_A Hypothetical protein AT 97.4 6.6E-05 2.3E-09 66.8 3.3 37 265-301 10-46 (191)
139 2r6a_A DNAB helicase, replicat 97.4 0.00019 6.7E-09 73.7 7.1 38 260-297 199-240 (454)
140 1kag_A SKI, shikimate kinase I 97.4 0.00028 9.4E-09 61.7 7.0 36 265-302 5-40 (173)
141 3kb2_A SPBC2 prophage-derived 97.4 9.5E-05 3.3E-09 64.2 3.7 31 266-296 3-33 (173)
142 2b8t_A Thymidine kinase; deoxy 97.3 0.00023 8E-09 66.8 6.1 69 267-335 15-101 (223)
143 2iyv_A Shikimate kinase, SK; t 97.3 0.00011 3.7E-09 65.2 3.5 35 266-302 4-38 (184)
144 3gfo_A Cobalt import ATP-bindi 97.3 0.00086 2.9E-08 64.8 10.2 57 314-383 152-208 (275)
145 1via_A Shikimate kinase; struc 97.3 9E-05 3.1E-09 65.4 2.9 34 266-301 6-39 (175)
146 3iij_A Coilin-interacting nucl 97.3 9.5E-05 3.2E-09 65.5 3.0 32 264-295 11-42 (180)
147 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00032 1.1E-08 66.5 6.8 38 266-303 6-46 (260)
148 1s96_A Guanylate kinase, GMP k 97.3 0.00047 1.6E-08 64.2 7.8 23 266-288 18-40 (219)
149 1ly1_A Polynucleotide kinase; 97.3 0.00053 1.8E-08 59.8 7.7 38 264-303 2-40 (181)
150 3sfz_A APAF-1, apoptotic pepti 97.3 0.002 6.7E-08 72.4 13.9 50 228-287 121-170 (1249)
151 2a5y_B CED-4; apoptosis; HET: 97.3 0.0033 1.1E-07 65.8 14.8 44 234-286 131-174 (549)
152 2fz4_A DNA repair protein RAD2 97.3 0.00098 3.4E-08 62.4 9.6 38 266-303 110-148 (237)
153 2q6t_A DNAB replication FORK h 97.3 0.00038 1.3E-08 71.3 7.3 39 260-298 196-238 (444)
154 1z6t_A APAF-1, apoptotic prote 97.2 0.001 3.6E-08 69.6 10.6 48 229-286 122-169 (591)
155 2cbz_A Multidrug resistance-as 97.2 0.00084 2.9E-08 63.2 8.9 23 266-288 33-55 (237)
156 2cdn_A Adenylate kinase; phosp 97.2 0.00017 5.8E-09 65.1 3.6 32 264-295 20-51 (201)
157 1g6h_A High-affinity branched- 97.2 0.0012 3.9E-08 62.9 9.6 50 319-382 167-216 (257)
158 1zuh_A Shikimate kinase; alpha 97.2 0.00016 5.6E-09 63.2 3.2 36 266-303 9-44 (168)
159 1y63_A LMAJ004144AAA protein; 97.2 0.00013 4.6E-09 65.2 2.7 35 265-301 11-46 (184)
160 3t61_A Gluconokinase; PSI-biol 97.2 0.00022 7.6E-09 64.3 4.1 31 264-294 18-48 (202)
161 2ze6_A Isopentenyl transferase 97.2 0.00019 6.6E-09 68.0 3.8 32 266-297 3-34 (253)
162 2r8r_A Sensor protein; KDPD, P 97.2 0.0019 6.6E-08 60.9 10.4 32 266-297 8-42 (228)
163 4g1u_C Hemin import ATP-bindin 97.2 0.0013 4.4E-08 63.1 9.3 57 311-380 147-209 (266)
164 1tev_A UMP-CMP kinase; ploop, 97.2 0.00014 4.7E-09 64.4 2.3 36 264-301 3-38 (196)
165 3lw7_A Adenylate kinase relate 97.2 0.00016 5.4E-09 62.3 2.6 29 266-295 3-31 (179)
166 2ewv_A Twitching motility prot 97.2 0.00064 2.2E-08 68.3 7.4 69 265-333 137-219 (372)
167 1qf9_A UMP/CMP kinase, protein 97.1 0.00015 5E-09 64.1 2.4 32 264-295 6-37 (194)
168 3e1s_A Exodeoxyribonuclease V, 97.1 0.00051 1.7E-08 73.0 6.8 70 266-335 206-291 (574)
169 2pez_A Bifunctional 3'-phospho 97.1 0.0003 1E-08 62.2 4.2 36 265-300 6-44 (179)
170 1e6c_A Shikimate kinase; phosp 97.1 0.0002 7E-09 62.4 3.0 35 266-302 4-38 (173)
171 3bh0_A DNAB-like replicative h 97.1 0.00091 3.1E-08 65.4 7.8 38 260-297 64-104 (315)
172 3tui_C Methionine import ATP-b 97.1 0.00093 3.2E-08 67.3 8.0 56 312-380 170-225 (366)
173 1v43_A Sugar-binding transport 97.1 0.0018 6.1E-08 65.3 10.0 22 267-288 40-61 (372)
174 2ff7_A Alpha-hemolysin translo 97.1 0.0016 5.3E-08 61.7 9.0 54 313-381 153-206 (247)
175 2c95_A Adenylate kinase 1; tra 97.1 0.00019 6.6E-09 63.8 2.5 31 265-295 10-40 (196)
176 1vpl_A ABC transporter, ATP-bi 97.1 0.0021 7.2E-08 61.3 10.0 51 316-380 157-207 (256)
177 2vli_A Antibiotic resistance p 97.1 0.0002 7E-09 63.0 2.6 29 265-293 6-34 (183)
178 3dl0_A Adenylate kinase; phosp 97.1 0.00025 8.4E-09 64.6 3.2 29 267-295 3-31 (216)
179 2pcj_A ABC transporter, lipopr 97.1 0.0013 4.3E-08 61.4 8.0 47 319-379 154-200 (224)
180 2nq2_C Hypothetical ABC transp 97.1 0.0024 8.1E-08 60.7 10.0 54 315-381 138-191 (253)
181 1aky_A Adenylate kinase; ATP:A 97.1 0.00023 7.9E-09 65.2 2.8 31 265-295 5-35 (220)
182 3fb4_A Adenylate kinase; psych 97.1 0.00027 9.1E-09 64.3 3.2 29 267-295 3-31 (216)
183 3cm0_A Adenylate kinase; ATP-b 97.0 0.00021 7.3E-09 63.2 2.5 30 266-295 6-35 (186)
184 1vma_A Cell division protein F 97.0 0.0013 4.6E-08 64.4 8.4 72 262-333 102-196 (306)
185 2bwj_A Adenylate kinase 5; pho 97.0 0.00021 7.2E-09 63.7 2.3 31 264-294 12-42 (199)
186 1zak_A Adenylate kinase; ATP:A 97.0 0.00022 7.4E-09 65.5 2.5 31 264-294 5-35 (222)
187 2pt5_A Shikimate kinase, SK; a 97.0 0.00029 1E-08 61.2 3.2 28 267-294 3-30 (168)
188 1sgw_A Putative ABC transporte 97.0 0.0011 3.8E-08 61.6 7.2 23 266-288 37-59 (214)
189 1tf7_A KAIC; homohexamer, hexa 97.0 0.0022 7.5E-08 67.0 10.3 105 265-379 282-417 (525)
190 1jjv_A Dephospho-COA kinase; P 97.0 0.00063 2.1E-08 61.4 5.3 49 266-317 4-52 (206)
191 1zd8_A GTP:AMP phosphotransfer 97.0 0.00022 7.5E-09 65.7 2.3 32 264-295 7-38 (227)
192 1kht_A Adenylate kinase; phosp 97.0 0.0002 6.9E-09 63.2 1.9 35 266-300 5-42 (192)
193 3rlf_A Maltose/maltodextrin im 97.0 0.00048 1.6E-08 69.8 4.9 22 267-288 32-53 (381)
194 2ixe_A Antigen peptide transpo 97.0 0.0041 1.4E-07 59.7 11.3 55 313-380 164-218 (271)
195 1tf7_A KAIC; homohexamer, hexa 97.0 0.0023 8E-08 66.8 10.2 109 265-382 40-188 (525)
196 3be4_A Adenylate kinase; malar 97.0 0.00025 8.5E-09 65.1 2.4 31 265-295 6-36 (217)
197 3kl4_A SRP54, signal recogniti 97.0 0.0052 1.8E-07 63.2 12.4 72 263-334 96-190 (433)
198 3dm5_A SRP54, signal recogniti 97.0 0.0041 1.4E-07 64.1 11.5 71 263-333 99-192 (443)
199 4eun_A Thermoresistant glucoki 97.0 0.00038 1.3E-08 63.0 3.3 34 265-300 30-63 (200)
200 1ex7_A Guanylate kinase; subst 97.0 0.0011 3.6E-08 60.6 6.2 39 265-303 2-61 (186)
201 1nks_A Adenylate kinase; therm 96.9 0.00057 1.9E-08 60.2 4.2 36 266-301 3-41 (194)
202 2yyz_A Sugar ABC transporter, 96.9 0.0019 6.5E-08 64.8 8.5 21 267-287 32-52 (359)
203 1ak2_A Adenylate kinase isoenz 96.9 0.00035 1.2E-08 64.8 2.9 31 265-295 17-47 (233)
204 1knq_A Gluconate kinase; ALFA/ 96.9 0.0004 1.4E-08 61.0 3.1 29 266-294 10-38 (175)
205 3uie_A Adenylyl-sulfate kinase 96.9 0.00053 1.8E-08 62.0 4.0 36 265-300 26-64 (200)
206 1ukz_A Uridylate kinase; trans 96.9 0.00032 1.1E-08 63.1 2.5 31 265-295 16-46 (203)
207 1jr3_D DNA polymerase III, del 96.9 0.0033 1.1E-07 61.5 9.9 121 264-412 18-155 (343)
208 1z47_A CYSA, putative ABC-tran 96.9 0.00077 2.6E-08 67.6 5.4 22 267-288 44-65 (355)
209 3tif_A Uncharacterized ABC tra 96.9 0.0018 6E-08 60.9 7.6 55 313-380 153-207 (235)
210 2if2_A Dephospho-COA kinase; a 96.9 0.001 3.6E-08 59.7 5.7 49 266-317 3-51 (204)
211 3umf_A Adenylate kinase; rossm 96.9 0.0004 1.4E-08 65.0 3.0 37 263-301 28-64 (217)
212 1g5t_A COB(I)alamin adenosyltr 96.9 0.0026 9E-08 58.7 8.4 101 266-379 30-163 (196)
213 3tlx_A Adenylate kinase 2; str 96.9 0.00035 1.2E-08 65.7 2.5 32 264-295 29-60 (243)
214 1ji0_A ABC transporter; ATP bi 96.9 0.0019 6.6E-08 60.7 7.7 50 317-380 151-200 (240)
215 2iut_A DNA translocase FTSK; n 96.9 0.0075 2.6E-07 64.1 12.8 64 325-402 345-410 (574)
216 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00025 8.6E-09 71.3 1.3 52 235-294 3-54 (359)
217 2olj_A Amino acid ABC transpor 96.8 0.0031 1.1E-07 60.4 8.8 49 318-380 172-220 (263)
218 1cke_A CK, MSSA, protein (cyti 96.8 0.00054 1.9E-08 62.5 3.2 33 266-300 7-39 (227)
219 3fvq_A Fe(3+) IONS import ATP- 96.8 0.0032 1.1E-07 63.2 9.1 28 260-287 24-53 (359)
220 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 59.4 4.0 30 267-296 3-35 (195)
221 1e4v_A Adenylate kinase; trans 96.8 0.00052 1.8E-08 62.6 2.8 29 267-295 3-31 (214)
222 2yz2_A Putative ABC transporte 96.8 0.0014 4.8E-08 62.7 5.8 52 317-382 150-201 (266)
223 3d31_A Sulfate/molybdate ABC t 96.8 0.0018 6.3E-08 64.6 6.8 22 267-288 29-50 (348)
224 3nh6_A ATP-binding cassette SU 96.8 0.0023 8E-08 62.7 7.4 55 311-380 196-250 (306)
225 2jaq_A Deoxyguanosine kinase; 96.8 0.00064 2.2E-08 60.5 3.0 29 267-295 3-31 (205)
226 2qor_A Guanylate kinase; phosp 96.7 0.0013 4.6E-08 59.5 5.1 26 264-289 12-37 (204)
227 2ius_A DNA translocase FTSK; n 96.7 0.0046 1.6E-07 64.9 9.8 72 323-408 296-373 (512)
228 2px0_A Flagellar biosynthesis 96.7 0.0022 7.7E-08 62.4 7.0 66 264-331 105-190 (296)
229 1q57_A DNA primase/helicase; d 96.7 0.0018 6.3E-08 67.1 6.7 39 260-298 238-280 (503)
230 3sr0_A Adenylate kinase; phosp 96.7 0.00076 2.6E-08 62.3 3.2 33 267-301 3-35 (206)
231 4f4c_A Multidrug resistance pr 96.7 0.0016 5.4E-08 75.5 6.5 60 309-383 558-617 (1321)
232 2grj_A Dephospho-COA kinase; T 96.7 0.0021 7.1E-08 58.7 5.8 39 266-306 14-52 (192)
233 3crm_A TRNA delta(2)-isopenten 96.7 0.0007 2.4E-08 67.1 2.8 34 264-297 5-38 (323)
234 2v54_A DTMP kinase, thymidylat 96.6 0.00083 2.8E-08 60.1 3.0 32 265-296 5-37 (204)
235 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.6E-08 59.4 3.7 34 266-301 4-37 (208)
236 2bbw_A Adenylate kinase 4, AK4 96.6 0.0011 3.6E-08 62.0 3.7 31 264-294 27-57 (246)
237 3tau_A Guanylate kinase, GMP k 96.6 0.0015 5.1E-08 59.6 4.7 24 265-288 9-32 (208)
238 1kgd_A CASK, peripheral plasma 96.6 0.0017 6E-08 57.7 4.9 24 265-288 6-29 (180)
239 2z0h_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 58.5 3.9 29 267-295 3-34 (197)
240 2xb4_A Adenylate kinase; ATP-b 96.6 0.00097 3.3E-08 61.5 3.2 28 267-294 3-30 (223)
241 1uj2_A Uridine-cytidine kinase 96.6 0.00093 3.2E-08 62.7 3.1 38 264-301 22-67 (252)
242 3b6e_A Interferon-induced heli 96.6 0.02 6.7E-07 51.0 11.8 22 266-287 50-71 (216)
243 2oap_1 GSPE-2, type II secreti 96.6 0.00082 2.8E-08 70.5 2.8 68 266-333 262-343 (511)
244 2wwf_A Thymidilate kinase, put 96.6 0.00065 2.2E-08 61.1 1.8 30 264-293 10-39 (212)
245 1oxx_K GLCV, glucose, ABC tran 96.6 0.0043 1.5E-07 62.0 7.9 22 267-288 34-55 (353)
246 3thx_B DNA mismatch repair pro 96.6 0.007 2.4E-07 67.7 10.3 105 265-382 674-799 (918)
247 3b5x_A Lipid A export ATP-bind 96.5 0.0027 9.3E-08 67.2 6.6 52 315-381 490-541 (582)
248 2it1_A 362AA long hypothetical 96.5 0.0073 2.5E-07 60.6 9.4 22 267-288 32-53 (362)
249 1ltq_A Polynucleotide kinase; 96.5 0.0043 1.5E-07 59.2 7.4 37 265-303 3-40 (301)
250 1uf9_A TT1252 protein; P-loop, 96.5 0.0017 5.7E-08 57.9 4.2 36 265-303 9-44 (203)
251 4a1f_A DNAB helicase, replicat 96.5 0.0036 1.2E-07 62.3 6.7 37 261-297 43-82 (338)
252 3qf4_B Uncharacterized ABC tra 96.5 0.0036 1.2E-07 66.6 7.1 58 310-382 496-553 (598)
253 1nn5_A Similar to deoxythymidy 96.5 0.00078 2.7E-08 60.7 1.7 28 264-291 9-36 (215)
254 1vt4_I APAF-1 related killer D 96.5 0.0069 2.4E-07 68.7 9.6 43 234-287 131-173 (1221)
255 4a82_A Cystic fibrosis transme 96.5 0.0024 8.2E-08 67.6 5.6 57 311-382 483-539 (578)
256 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4E-08 62.9 2.9 30 266-295 50-79 (250)
257 3r20_A Cytidylate kinase; stru 96.5 0.0014 4.7E-08 62.0 3.2 35 264-300 9-43 (233)
258 3ney_A 55 kDa erythrocyte memb 96.4 0.0024 8.1E-08 58.9 4.7 25 264-288 19-43 (197)
259 2yvu_A Probable adenylyl-sulfa 96.4 0.0022 7.6E-08 56.9 4.4 38 265-302 14-54 (186)
260 3bgw_A DNAB-like replicative h 96.4 0.0032 1.1E-07 64.8 6.1 39 260-298 193-234 (444)
261 1g29_1 MALK, maltose transport 96.4 0.0044 1.5E-07 62.4 7.0 22 267-288 32-53 (372)
262 3b60_A Lipid A export ATP-bind 96.4 0.0078 2.7E-07 63.7 9.3 54 313-381 488-541 (582)
263 2plr_A DTMP kinase, probable t 96.4 0.0015 5.2E-08 58.4 3.2 26 266-291 6-31 (213)
264 3j16_B RLI1P; ribosome recycli 96.4 0.0066 2.3E-07 64.9 8.5 56 313-382 229-284 (608)
265 1g41_A Heat shock protein HSLU 96.4 0.01 3.5E-07 61.2 9.5 92 311-408 240-345 (444)
266 3c8u_A Fructokinase; YP_612366 96.4 0.0026 8.8E-08 57.8 4.5 24 266-289 24-47 (208)
267 3ozx_A RNAse L inhibitor; ATP 96.4 0.0078 2.7E-07 63.4 8.7 57 311-382 144-200 (538)
268 3qf4_A ABC transporter, ATP-bi 96.4 0.0063 2.1E-07 64.6 8.1 56 310-380 484-539 (587)
269 2bdt_A BH3686; alpha-beta prot 96.4 0.0024 8.1E-08 56.7 4.1 35 266-301 4-38 (189)
270 1m7g_A Adenylylsulfate kinase; 96.3 0.002 6.8E-08 58.6 3.5 36 266-301 27-66 (211)
271 3ozx_A RNAse L inhibitor; ATP 96.3 0.01 3.5E-07 62.5 9.3 59 309-380 389-447 (538)
272 3zvl_A Bifunctional polynucleo 96.3 0.0031 1E-07 64.1 5.1 31 264-294 258-288 (416)
273 4aby_A DNA repair protein RECN 96.3 0.014 4.9E-07 58.2 9.9 50 316-380 306-357 (415)
274 3a00_A Guanylate kinase, GMP k 96.3 0.0035 1.2E-07 55.9 4.9 24 265-288 2-25 (186)
275 2h92_A Cytidylate kinase; ross 96.3 0.0023 7.8E-08 58.1 3.7 35 265-301 4-38 (219)
276 1w4r_A Thymidine kinase; type 96.3 0.0047 1.6E-07 56.9 5.7 67 267-335 23-103 (195)
277 1lvg_A Guanylate kinase, GMP k 96.3 0.0036 1.2E-07 56.7 4.8 24 265-288 5-28 (198)
278 4e22_A Cytidylate kinase; P-lo 96.2 0.0021 7.4E-08 60.5 3.3 28 266-293 29-56 (252)
279 3gd7_A Fusion complex of cysti 96.2 0.0076 2.6E-07 61.1 7.5 22 266-287 49-70 (390)
280 1vht_A Dephospho-COA kinase; s 96.2 0.0049 1.7E-07 56.0 5.5 35 265-302 5-39 (218)
281 4f4c_A Multidrug resistance pr 96.2 0.0045 1.5E-07 71.8 6.4 57 311-382 1223-1279(1321)
282 2j41_A Guanylate kinase; GMP, 96.2 0.002 7E-08 57.5 2.8 24 265-288 7-30 (207)
283 3j16_B RLI1P; ribosome recycli 96.2 0.009 3.1E-07 63.9 8.1 58 310-380 472-529 (608)
284 1w36_D RECD, exodeoxyribonucle 96.2 0.0055 1.9E-07 65.3 6.4 22 266-287 166-187 (608)
285 3a8t_A Adenylate isopentenyltr 96.2 0.0016 5.4E-08 65.0 1.9 33 265-297 41-73 (339)
286 2f6r_A COA synthase, bifunctio 96.1 0.0039 1.3E-07 59.9 4.6 36 265-303 76-111 (281)
287 1q3t_A Cytidylate kinase; nucl 96.1 0.0028 9.5E-08 58.8 3.4 35 265-301 17-51 (236)
288 2axn_A 6-phosphofructo-2-kinas 96.1 0.01 3.6E-07 62.1 8.1 40 265-304 36-78 (520)
289 2qt1_A Nicotinamide riboside k 96.1 0.0016 5.3E-08 58.9 1.5 28 266-293 23-51 (207)
290 3llm_A ATP-dependent RNA helic 96.1 0.013 4.3E-07 54.2 7.7 21 265-285 77-97 (235)
291 3e70_C DPA, signal recognition 96.1 0.011 3.8E-07 58.4 7.5 26 263-288 128-153 (328)
292 1yqt_A RNAse L inhibitor; ATP- 96.1 0.012 4.1E-07 61.9 8.2 57 311-381 164-220 (538)
293 1p9r_A General secretion pathw 96.0 0.011 3.8E-07 60.4 7.6 91 227-332 143-245 (418)
294 3tr0_A Guanylate kinase, GMP k 96.0 0.0029 9.8E-08 56.5 2.9 23 266-288 9-31 (205)
295 3thx_A DNA mismatch repair pro 96.0 0.023 7.7E-07 63.7 10.6 101 265-380 663-786 (934)
296 3foz_A TRNA delta(2)-isopenten 96.0 0.0026 9E-08 62.8 2.6 33 264-296 10-42 (316)
297 1rz3_A Hypothetical protein rb 96.0 0.0088 3E-07 54.0 5.9 34 266-299 24-60 (201)
298 2gxq_A Heat resistant RNA depe 95.9 0.029 1E-06 49.8 9.0 19 265-283 39-57 (207)
299 3bk7_A ABC transporter ATP-bin 95.9 0.025 8.6E-07 60.4 9.8 57 311-380 477-533 (607)
300 3lnc_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 57.2 3.3 23 266-288 29-52 (231)
301 1wb9_A DNA mismatch repair pro 95.9 0.042 1.4E-06 60.6 11.8 23 265-287 608-630 (800)
302 2yhs_A FTSY, cell division pro 95.9 0.018 6.3E-07 60.1 8.4 25 264-288 293-317 (503)
303 1zu4_A FTSY; GTPase, signal re 95.8 0.016 5.5E-07 56.9 7.5 36 262-297 103-141 (320)
304 3asz_A Uridine kinase; cytidin 95.8 0.0029 1E-07 57.0 1.9 24 266-289 8-31 (211)
305 3fdi_A Uncharacterized protein 95.8 0.0047 1.6E-07 56.5 3.3 29 266-294 8-36 (201)
306 3d3q_A TRNA delta(2)-isopenten 95.8 0.0038 1.3E-07 62.3 2.8 31 266-296 9-39 (340)
307 1xx6_A Thymidine kinase; NESG, 95.7 0.012 4E-07 53.7 5.6 69 266-335 10-93 (191)
308 2jeo_A Uridine-cytidine kinase 95.7 0.0045 1.5E-07 57.7 2.8 25 267-291 28-52 (245)
309 1t6n_A Probable ATP-dependent 95.7 0.29 9.9E-06 43.9 14.8 58 228-287 14-74 (220)
310 2gza_A Type IV secretion syste 95.7 0.0078 2.7E-07 60.0 4.5 69 266-334 177-263 (361)
311 3exa_A TRNA delta(2)-isopenten 95.7 0.0045 1.5E-07 61.3 2.7 31 266-296 5-35 (322)
312 4b3f_X DNA-binding protein smu 95.6 0.039 1.3E-06 58.9 10.2 33 267-299 208-243 (646)
313 3bk7_A ABC transporter ATP-bin 95.6 0.016 5.4E-07 61.9 7.1 57 311-381 234-290 (607)
314 1z6g_A Guanylate kinase; struc 95.6 0.006 2E-07 56.2 3.3 23 266-288 25-47 (218)
315 1yqt_A RNAse L inhibitor; ATP- 95.6 0.031 1E-06 58.8 9.1 58 310-380 406-463 (538)
316 2lna_A AFG3-like protein 2; st 95.6 0.028 9.6E-07 46.2 6.9 62 92-155 14-76 (99)
317 1ls1_A Signal recognition part 95.6 0.035 1.2E-06 53.7 8.8 72 263-334 97-191 (295)
318 3g5u_A MCG1178, multidrug resi 95.5 0.038 1.3E-06 63.9 10.2 58 310-382 1176-1233(1284)
319 3b9q_A Chloroplast SRP recepto 95.5 0.012 4.1E-07 57.3 5.2 26 263-288 99-124 (302)
320 2yl4_A ATP-binding cassette SU 95.5 0.02 6.7E-07 60.7 7.3 54 313-381 491-544 (595)
321 1znw_A Guanylate kinase, GMP k 95.5 0.0063 2.2E-07 55.2 2.9 23 266-288 22-44 (207)
322 1x6v_B Bifunctional 3'-phospho 95.5 0.0085 2.9E-07 64.4 4.3 37 264-300 52-91 (630)
323 1hv8_A Putative ATP-dependent 95.5 0.045 1.5E-06 52.4 9.2 23 265-287 45-67 (367)
324 2iw3_A Elongation factor 3A; a 95.5 0.02 6.9E-07 64.4 7.4 55 311-382 554-608 (986)
325 3g5u_A MCG1178, multidrug resi 95.5 0.0099 3.4E-07 68.7 5.1 56 311-381 532-587 (1284)
326 1htw_A HI0065; nucleotide-bind 95.5 0.0068 2.3E-07 53.5 2.9 23 266-288 35-57 (158)
327 2xau_A PRE-mRNA-splicing facto 95.5 0.017 5.9E-07 63.3 6.7 22 266-287 111-132 (773)
328 2j37_W Signal recognition part 95.4 0.019 6.7E-07 60.0 6.8 35 263-297 100-137 (504)
329 2qmh_A HPR kinase/phosphorylas 95.4 0.0048 1.6E-07 57.3 1.9 31 264-295 34-64 (205)
330 2v3c_C SRP54, signal recogniti 95.4 0.052 1.8E-06 55.6 9.7 36 263-298 98-136 (432)
331 3ux8_A Excinuclease ABC, A sub 95.4 0.043 1.5E-06 58.9 9.4 57 310-380 548-607 (670)
332 1odf_A YGR205W, hypothetical 3 95.4 0.0056 1.9E-07 59.4 2.2 26 264-289 31-56 (290)
333 3gmt_A Adenylate kinase; ssgci 95.3 0.0081 2.8E-07 56.7 3.0 29 267-295 11-39 (230)
334 2xxa_A Signal recognition part 95.3 0.06 2.1E-06 55.1 9.6 71 262-332 98-192 (433)
335 1bif_A 6-phosphofructo-2-kinas 95.2 0.043 1.5E-06 56.3 8.3 37 265-301 40-79 (469)
336 2og2_A Putative signal recogni 95.2 0.018 6E-07 57.8 5.2 27 262-288 155-181 (359)
337 2c9o_A RUVB-like 1; hexameric 95.2 0.028 9.5E-07 57.5 6.8 69 324-412 296-379 (456)
338 1j8m_F SRP54, signal recogniti 95.2 0.036 1.2E-06 53.8 7.2 69 264-332 98-189 (297)
339 2pl3_A Probable ATP-dependent 95.2 0.14 4.7E-06 46.7 10.9 54 227-282 24-80 (236)
340 1m8p_A Sulfate adenylyltransfe 95.1 0.028 9.7E-07 59.6 6.9 38 265-302 397-438 (573)
341 1ewq_A DNA mismatch repair pro 95.1 0.042 1.4E-06 60.3 8.5 23 265-287 577-599 (765)
342 1a7j_A Phosphoribulokinase; tr 95.1 0.0069 2.4E-07 58.6 1.9 35 266-300 7-44 (290)
343 1gtv_A TMK, thymidylate kinase 95.0 0.0046 1.6E-07 55.5 0.4 23 267-289 3-25 (214)
344 3eph_A TRNA isopentenyltransfe 95.0 0.0079 2.7E-07 61.3 2.0 30 266-295 4-33 (409)
345 2v9p_A Replication protein E1; 95.0 0.011 3.8E-07 57.9 3.0 24 266-289 128-151 (305)
346 2ffh_A Protein (FFH); SRP54, s 95.0 0.065 2.2E-06 54.9 8.8 70 263-332 97-189 (425)
347 2i3b_A HCR-ntpase, human cance 95.0 0.011 3.8E-07 53.6 2.8 23 266-288 3-25 (189)
348 2p6r_A Afuhel308 helicase; pro 95.0 0.049 1.7E-06 58.5 8.2 34 265-298 41-77 (702)
349 3hdt_A Putative kinase; struct 94.8 0.012 4.1E-07 54.9 2.6 29 266-294 16-44 (223)
350 3tqc_A Pantothenate kinase; bi 94.8 0.042 1.4E-06 54.1 6.6 26 264-289 92-117 (321)
351 3p32_A Probable GTPase RV1496/ 94.8 0.045 1.6E-06 54.1 6.9 31 266-296 81-114 (355)
352 2fwr_A DNA repair protein RAD2 94.7 0.051 1.7E-06 55.0 7.3 37 266-302 110-147 (472)
353 3q72_A GTP-binding protein RAD 94.7 0.015 5.2E-07 49.3 2.9 20 267-286 5-24 (166)
354 1sq5_A Pantothenate kinase; P- 94.7 0.012 4.1E-07 57.2 2.3 24 266-289 82-105 (308)
355 4eaq_A DTMP kinase, thymidylat 94.6 0.015 5.3E-07 54.0 2.9 28 266-293 28-57 (229)
356 3cr8_A Sulfate adenylyltranfer 94.6 0.035 1.2E-06 58.7 6.0 37 266-302 371-411 (552)
357 2j9r_A Thymidine kinase; TK1, 94.6 0.038 1.3E-06 51.5 5.5 30 267-296 31-63 (214)
358 1c9k_A COBU, adenosylcobinamid 94.6 0.015 5.1E-07 52.8 2.7 32 267-299 2-33 (180)
359 3tbk_A RIG-I helicase domain; 94.6 0.47 1.6E-05 48.0 14.2 33 266-298 21-61 (555)
360 2o8b_B DNA mismatch repair pro 94.6 0.085 2.9E-06 59.7 9.3 21 265-285 790-810 (1022)
361 3b85_A Phosphate starvation-in 94.5 0.012 4.1E-07 54.2 1.9 22 266-287 24-45 (208)
362 1wp9_A ATP-dependent RNA helic 94.5 0.077 2.6E-06 52.2 7.9 36 266-301 25-65 (494)
363 2onk_A Molybdate/tungstate ABC 94.5 0.014 4.6E-07 55.1 2.3 53 315-380 136-188 (240)
364 2oxc_A Probable ATP-dependent 94.4 0.11 3.7E-06 47.5 8.1 54 226-281 22-78 (230)
365 1xti_A Probable ATP-dependent 94.4 0.19 6.5E-06 48.7 10.3 22 265-286 46-67 (391)
366 3aez_A Pantothenate kinase; tr 94.4 0.017 6E-07 56.5 2.7 23 266-288 92-114 (312)
367 3ly5_A ATP-dependent RNA helic 94.3 0.053 1.8E-06 50.9 6.0 19 265-283 92-110 (262)
368 4i1u_A Dephospho-COA kinase; s 94.3 0.045 1.5E-06 50.8 5.3 50 266-318 11-60 (210)
369 2ged_A SR-beta, signal recogni 94.3 0.032 1.1E-06 48.8 4.1 24 265-288 49-72 (193)
370 3ux8_A Excinuclease ABC, A sub 94.3 0.08 2.7E-06 56.8 8.0 56 311-380 208-265 (670)
371 2va8_A SSO2462, SKI2-type heli 94.3 0.077 2.6E-06 57.0 7.8 21 264-284 46-66 (715)
372 3pey_A ATP-dependent RNA helic 94.3 0.24 8.1E-06 47.8 10.7 21 265-285 45-65 (395)
373 3iuy_A Probable ATP-dependent 94.3 0.083 2.8E-06 47.9 7.0 18 265-282 58-75 (228)
374 1rj9_A FTSY, signal recognitio 94.3 0.02 7E-07 55.8 3.0 25 264-288 102-126 (304)
375 3ice_A Transcription terminati 94.3 0.044 1.5E-06 55.8 5.5 23 266-288 176-198 (422)
376 4a2p_A RIG-I, retinoic acid in 94.3 0.22 7.5E-06 50.7 10.9 33 266-298 24-64 (556)
377 1vec_A ATP-dependent RNA helic 94.3 0.14 4.6E-06 45.4 8.3 18 265-282 41-58 (206)
378 3kta_A Chromosome segregation 94.3 0.02 6.9E-07 50.2 2.7 24 266-289 28-51 (182)
379 1gm5_A RECG; helicase, replica 94.3 0.23 7.8E-06 54.6 11.6 35 264-298 389-426 (780)
380 2nzj_A GTP-binding protein REM 94.3 0.035 1.2E-06 47.3 4.1 22 266-287 6-27 (175)
381 2zj8_A DNA helicase, putative 94.2 0.081 2.8E-06 57.0 7.9 19 264-282 39-57 (720)
382 1lw7_A Transcriptional regulat 94.2 0.024 8.3E-07 56.1 3.4 25 266-290 172-196 (365)
383 1s2m_A Putative ATP-dependent 94.2 0.27 9.4E-06 47.9 11.0 57 227-285 20-79 (400)
384 3eiq_A Eukaryotic initiation f 94.2 0.2 6.7E-06 49.0 9.9 20 265-284 78-97 (414)
385 1q0u_A Bstdead; DEAD protein, 94.2 0.1 3.5E-06 47.1 7.3 19 265-283 42-60 (219)
386 1b0u_A Histidine permease; ABC 94.2 0.013 4.6E-07 55.7 1.4 48 319-380 167-214 (262)
387 2j0s_A ATP-dependent RNA helic 94.1 0.27 9.1E-06 48.2 10.9 57 227-285 36-95 (410)
388 4dsu_A GTPase KRAS, isoform 2B 94.1 0.032 1.1E-06 48.2 3.7 23 266-288 6-28 (189)
389 3fe2_A Probable ATP-dependent 94.1 0.086 2.9E-06 48.5 6.8 19 265-283 67-85 (242)
390 2d2e_A SUFC protein; ABC-ATPas 94.1 0.019 6.5E-07 54.2 2.2 51 317-381 155-205 (250)
391 2zu0_C Probable ATP-dependent 94.1 0.019 6.6E-07 54.8 2.3 21 267-287 49-69 (267)
392 1kao_A RAP2A; GTP-binding prot 94.0 0.042 1.4E-06 46.1 4.2 23 266-288 5-27 (167)
393 1sky_E F1-ATPase, F1-ATP synth 94.0 0.019 6.5E-07 59.6 2.3 23 266-288 153-175 (473)
394 1mv5_A LMRA, multidrug resista 94.0 0.017 5.7E-07 54.3 1.7 21 267-287 31-51 (243)
395 2pze_A Cystic fibrosis transme 94.0 0.017 5.9E-07 53.7 1.7 23 266-288 36-58 (229)
396 2gks_A Bifunctional SAT/APS ki 94.0 0.096 3.3E-06 55.2 7.6 39 265-303 373-414 (546)
397 1r8s_A ADP-ribosylation factor 94.0 0.17 5.9E-06 42.5 7.9 21 267-287 3-23 (164)
398 2qm8_A GTPase/ATPase; G protei 93.9 0.071 2.4E-06 52.5 6.1 23 266-288 57-79 (337)
399 1np6_A Molybdopterin-guanine d 93.9 0.028 9.5E-07 50.4 2.9 24 265-288 7-30 (174)
400 3lxw_A GTPase IMAP family memb 93.9 0.071 2.4E-06 49.8 5.8 23 266-288 23-45 (247)
401 2qi9_C Vitamin B12 import ATP- 93.8 0.019 6.6E-07 54.3 1.7 22 267-288 29-50 (249)
402 2ghi_A Transport protein; mult 93.8 0.017 5.7E-07 55.0 1.3 52 315-381 165-216 (260)
403 2f9l_A RAB11B, member RAS onco 93.8 0.029 9.8E-07 49.8 2.8 23 266-288 7-29 (199)
404 2ihy_A ABC transporter, ATP-bi 93.8 0.02 6.8E-07 55.2 1.7 22 267-288 50-71 (279)
405 3vkw_A Replicase large subunit 93.8 0.095 3.2E-06 54.0 6.9 22 266-287 163-184 (446)
406 2wsm_A Hydrogenase expression/ 93.8 0.043 1.5E-06 49.3 3.9 23 266-288 32-54 (221)
407 2f7s_A C25KG, RAS-related prot 93.7 0.21 7.3E-06 44.4 8.5 22 266-287 27-48 (217)
408 1oix_A RAS-related protein RAB 93.6 0.028 9.7E-07 49.8 2.4 22 267-288 32-53 (191)
409 1zd9_A ADP-ribosylation factor 93.5 0.11 3.7E-06 45.5 6.0 22 266-287 24-45 (188)
410 3sop_A Neuronal-specific septi 93.5 0.028 9.6E-07 53.8 2.3 23 266-288 4-26 (270)
411 1x3s_A RAS-related protein RAB 93.5 0.11 3.6E-06 45.2 5.8 23 266-288 17-39 (195)
412 1p5z_B DCK, deoxycytidine kina 93.4 0.015 5E-07 54.7 0.2 29 265-293 25-54 (263)
413 3h1t_A Type I site-specific re 93.4 0.097 3.3E-06 54.8 6.5 43 236-288 180-222 (590)
414 2ocp_A DGK, deoxyguanosine kin 93.4 0.028 9.7E-07 51.9 2.1 24 265-288 3-26 (241)
415 2bbs_A Cystic fibrosis transme 93.4 0.017 5.7E-07 56.1 0.6 32 257-288 55-88 (290)
416 2f1r_A Molybdopterin-guanine d 93.4 0.022 7.6E-07 50.9 1.3 23 266-288 4-26 (171)
417 1g8f_A Sulfate adenylyltransfe 93.4 0.038 1.3E-06 57.9 3.3 35 265-299 396-435 (511)
418 2pjz_A Hypothetical protein ST 93.4 0.025 8.6E-07 54.0 1.7 51 314-381 137-187 (263)
419 3l9o_A ATP-dependent RNA helic 93.4 0.16 5.6E-06 57.8 8.6 33 266-298 201-236 (1108)
420 1wrb_A DJVLGB; RNA helicase, D 93.3 0.11 3.9E-06 47.9 6.0 17 266-282 62-78 (253)
421 1xjc_A MOBB protein homolog; s 93.3 0.04 1.4E-06 49.4 2.8 23 266-288 6-28 (169)
422 2bov_A RAla, RAS-related prote 93.3 0.082 2.8E-06 46.4 4.8 23 266-288 16-38 (206)
423 1yrb_A ATP(GTP)binding protein 93.2 0.16 5.5E-06 46.8 6.9 31 266-296 16-48 (262)
424 2dyk_A GTP-binding protein; GT 93.0 0.047 1.6E-06 45.8 2.8 23 266-288 3-25 (161)
425 3tqf_A HPR(Ser) kinase; transf 93.0 0.032 1.1E-06 50.7 1.8 23 265-287 17-39 (181)
426 2ykg_A Probable ATP-dependent 93.0 0.61 2.1E-05 49.3 12.0 21 266-286 30-50 (696)
427 2p67_A LAO/AO transport system 93.0 0.11 3.9E-06 51.0 5.8 23 266-288 58-80 (341)
428 3i5x_A ATP-dependent RNA helic 93.0 0.19 6.6E-06 51.9 7.8 18 265-282 112-129 (563)
429 3dz8_A RAS-related protein RAB 92.9 0.21 7.1E-06 43.6 7.0 23 266-288 25-47 (191)
430 4edh_A DTMP kinase, thymidylat 92.9 0.072 2.5E-06 49.1 4.0 30 266-295 8-40 (213)
431 1fzq_A ADP-ribosylation factor 92.9 0.097 3.3E-06 45.7 4.6 22 266-287 18-39 (181)
432 2www_A Methylmalonic aciduria 92.9 0.15 5E-06 50.5 6.4 23 266-288 76-98 (349)
433 1z2a_A RAS-related protein RAB 92.8 0.052 1.8E-06 45.8 2.7 22 266-287 7-28 (168)
434 3ber_A Probable ATP-dependent 92.8 0.26 9E-06 45.7 7.7 18 265-282 81-98 (249)
435 2orv_A Thymidine kinase; TP4A 92.7 0.17 5.8E-06 47.8 6.3 89 267-378 22-125 (234)
436 2hf9_A Probable hydrogenase ni 92.7 0.096 3.3E-06 47.1 4.5 23 266-288 40-62 (226)
437 2v6i_A RNA helicase; membrane, 92.7 0.15 5.2E-06 51.6 6.4 33 265-297 3-39 (431)
438 1nrj_B SR-beta, signal recogni 92.7 0.051 1.8E-06 48.6 2.6 23 266-288 14-36 (218)
439 2wji_A Ferrous iron transport 92.6 0.043 1.5E-06 47.1 2.0 22 266-287 5-26 (165)
440 2zej_A Dardarin, leucine-rich 92.6 0.037 1.3E-06 48.5 1.5 20 267-286 5-24 (184)
441 3sqw_A ATP-dependent RNA helic 92.6 0.58 2E-05 48.8 11.0 19 264-282 60-78 (579)
442 1z06_A RAS-related protein RAB 92.5 0.16 5.5E-06 44.2 5.6 22 266-287 22-43 (189)
443 2ce2_X GTPase HRAS; signaling 92.5 0.053 1.8E-06 45.3 2.4 23 266-288 5-27 (166)
444 1u8z_A RAS-related protein RAL 92.5 0.061 2.1E-06 45.1 2.7 23 266-288 6-28 (168)
445 3dkp_A Probable ATP-dependent 92.5 0.18 6.3E-06 46.1 6.2 18 265-282 67-84 (245)
446 3def_A T7I23.11 protein; chlor 92.5 0.2 6.7E-06 47.0 6.5 23 266-288 38-60 (262)
447 2dpy_A FLII, flagellum-specifi 92.5 0.088 3E-06 53.9 4.3 24 267-290 160-183 (438)
448 1ek0_A Protein (GTP-binding pr 92.4 0.062 2.1E-06 45.2 2.7 23 266-288 5-27 (170)
449 3v9p_A DTMP kinase, thymidylat 92.4 0.076 2.6E-06 49.7 3.5 23 266-288 27-49 (227)
450 2gk6_A Regulator of nonsense t 92.4 0.054 1.8E-06 57.7 2.8 22 266-287 197-218 (624)
451 1z0j_A RAB-22, RAS-related pro 92.4 0.065 2.2E-06 45.2 2.8 23 266-288 8-30 (170)
452 2npi_A Protein CLP1; CLP1-PCF1 92.3 0.055 1.9E-06 55.8 2.7 23 266-288 140-162 (460)
453 2i4i_A ATP-dependent RNA helic 92.3 0.7 2.4E-05 45.1 10.6 17 265-281 53-69 (417)
454 1wms_A RAB-9, RAB9, RAS-relate 92.3 0.068 2.3E-06 45.7 2.8 22 266-287 9-30 (177)
455 1z08_A RAS-related protein RAB 92.3 0.068 2.3E-06 45.2 2.7 22 266-287 8-29 (170)
456 2wjg_A FEOB, ferrous iron tran 92.3 0.055 1.9E-06 46.9 2.2 22 266-287 9-30 (188)
457 1tq4_A IIGP1, interferon-induc 92.2 0.066 2.3E-06 54.6 3.0 21 266-286 71-91 (413)
458 1ky3_A GTP-binding protein YPT 92.2 0.071 2.4E-06 45.6 2.8 23 266-288 10-32 (182)
459 1qhl_A Protein (cell division 92.1 0.03 1E-06 52.5 0.3 22 267-288 30-51 (227)
460 2erx_A GTP-binding protein DI- 92.1 0.062 2.1E-06 45.4 2.3 22 266-287 5-26 (172)
461 1r2q_A RAS-related protein RAB 92.1 0.073 2.5E-06 44.8 2.7 22 266-287 8-29 (170)
462 1g16_A RAS-related protein SEC 92.0 0.065 2.2E-06 45.2 2.4 22 266-287 5-26 (170)
463 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.071 2.4E-06 46.2 2.6 22 267-288 26-47 (149)
464 2hup_A RAS-related protein RAB 92.0 0.23 8E-06 44.0 6.1 22 266-287 31-52 (201)
465 1c1y_A RAS-related protein RAP 92.0 0.076 2.6E-06 44.7 2.7 22 266-287 5-26 (167)
466 3bc1_A RAS-related protein RAB 92.0 0.075 2.6E-06 45.8 2.7 22 266-287 13-34 (195)
467 4ag6_A VIRB4 ATPase, type IV s 91.9 0.13 4.5E-06 51.1 4.8 23 265-287 36-58 (392)
468 1nij_A Hypothetical protein YJ 91.9 0.095 3.3E-06 51.0 3.7 23 266-288 6-28 (318)
469 2hxs_A RAB-26, RAS-related pro 91.9 0.073 2.5E-06 45.5 2.5 22 266-287 8-29 (178)
470 3clv_A RAB5 protein, putative; 91.8 0.082 2.8E-06 45.7 2.8 22 266-287 9-30 (208)
471 3t1o_A Gliding protein MGLA; G 91.8 0.081 2.8E-06 45.8 2.7 23 266-288 16-38 (198)
472 3q85_A GTP-binding protein REM 91.7 0.08 2.7E-06 44.8 2.6 20 267-286 5-24 (169)
473 2db3_A ATP-dependent RNA helic 91.6 0.89 3E-05 45.6 10.6 54 226-281 54-110 (434)
474 1z0f_A RAB14, member RAS oncog 91.6 0.087 3E-06 44.8 2.7 23 266-288 17-39 (179)
475 3tmk_A Thymidylate kinase; pho 91.6 0.11 3.7E-06 48.2 3.5 26 266-291 7-32 (216)
476 1upt_A ARL1, ADP-ribosylation 91.6 0.09 3.1E-06 44.5 2.7 22 266-287 9-30 (171)
477 1u0l_A Probable GTPase ENGC; p 91.6 0.087 3E-06 50.9 2.9 24 266-289 171-194 (301)
478 2a9k_A RAS-related protein RAL 91.6 0.09 3.1E-06 45.1 2.7 23 266-288 20-42 (187)
479 3con_A GTPase NRAS; structural 91.6 0.089 3E-06 45.7 2.7 23 266-288 23-45 (190)
480 2gj8_A MNME, tRNA modification 91.5 0.062 2.1E-06 46.7 1.7 22 266-287 6-27 (172)
481 2vp4_A Deoxynucleoside kinase; 91.5 0.067 2.3E-06 49.2 2.0 21 267-287 23-43 (230)
482 2y8e_A RAB-protein 6, GH09086P 91.5 0.08 2.7E-06 45.1 2.4 22 266-287 16-37 (179)
483 2lkc_A Translation initiation 91.5 0.089 3E-06 45.0 2.6 23 265-287 9-31 (178)
484 2efe_B Small GTP-binding prote 91.5 0.094 3.2E-06 44.9 2.7 22 266-287 14-35 (181)
485 2fn4_A P23, RAS-related protei 91.5 0.084 2.9E-06 45.0 2.4 22 266-287 11-32 (181)
486 3fmo_B ATP-dependent RNA helic 91.5 0.33 1.1E-05 46.6 6.9 19 264-282 131-149 (300)
487 1pui_A ENGB, probable GTP-bind 91.5 0.028 9.5E-07 50.0 -0.7 23 266-288 28-50 (210)
488 2oil_A CATX-8, RAS-related pro 91.5 0.093 3.2E-06 45.8 2.8 23 266-288 27-49 (193)
489 1svi_A GTP-binding protein YSX 91.4 0.049 1.7E-06 47.6 0.9 23 265-287 24-46 (195)
490 4a2q_A RIG-I, retinoic acid in 91.4 1.5 5.1E-05 47.7 12.8 33 265-297 264-304 (797)
491 2xgj_A ATP-dependent RNA helic 91.4 0.5 1.7E-05 53.3 9.2 33 266-298 103-138 (1010)
492 3lv8_A DTMP kinase, thymidylat 91.3 0.085 2.9E-06 49.6 2.4 24 265-288 28-51 (236)
493 2obl_A ESCN; ATPase, hydrolase 91.3 0.12 4E-06 51.3 3.6 24 267-290 74-97 (347)
494 3fht_A ATP-dependent RNA helic 91.3 0.56 1.9E-05 45.6 8.5 19 264-282 64-82 (412)
495 1m7b_A RND3/RHOE small GTP-bin 91.1 0.091 3.1E-06 45.7 2.4 22 266-287 9-30 (184)
496 3tw8_B RAS-related protein RAB 91.1 0.094 3.2E-06 44.7 2.4 21 266-286 11-31 (181)
497 3oiy_A Reverse gyrase helicase 91.1 0.16 5.5E-06 50.2 4.4 21 265-285 37-57 (414)
498 2g6b_A RAS-related protein RAB 91.1 0.11 3.6E-06 44.5 2.7 23 266-288 12-34 (180)
499 2bme_A RAB4A, RAS-related prot 91.1 0.093 3.2E-06 45.3 2.4 23 266-288 12-34 (186)
500 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.11 3.7E-06 44.6 2.7 22 266-287 7-28 (186)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-46 Score=378.40 Aligned_cols=197 Identities=45% Similarity=0.771 Sum_probs=188.0
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
....++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++.+|+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 3445677899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+++.++|+|++++.+|++|..|+..+||||||||||+++++|..+.++++.+..+++++||.+||++....+|+||+|||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 99999999999999999999999999999999999999999987777777888899999999999999999999999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+|+.||+|++||||||+.|++ ++| +|.+||+.|+++.+
T Consensus 296 rpd~LDpAllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~ 336 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEF-PPPSVAARAEILRIHSRKMN 336 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEEC-CCCCHHHHHHHHHHHHTTSB
T ss_pred ChhhCCHhHcCCCcCceEEEc-CCcCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999 999 99999999998764
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-47 Score=387.54 Aligned_cols=198 Identities=40% Similarity=0.705 Sum_probs=188.8
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
..+..+..++++|+||+|++++|++|.+.+++ +++|+.|..+|.++|+|+|||||||||||+||+|+|++++.+|+.++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 34556788999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 297 ~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
++++.++|+|++++.+|.+|..|+..+||||||||||+++.+|..+..+++.+..+++++||.+||++...++|+||+||
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999998776677788899999999999999999999999999
Q ss_pred CCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 377 NRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 377 N~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+++.||+||+||||||++|++ ++| +|.+||+.|+++.+
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v-~lPd~~~R~~Il~~~l~~~~ 370 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILF-ENPDLSTKKKILGIHTSKMN 370 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECC-CCCCHHHHHHHHHHHHTTSC
T ss_pred CChhhcCHHHhcCCceeEEEEc-CCcCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999 999 99999999998754
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-44 Score=367.94 Aligned_cols=196 Identities=44% Similarity=0.715 Sum_probs=186.7
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
+..+..++++|+||+|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 445667899999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
++.++|+|+++..++.+|..|+.++||||||||+|+++.+|.......+.+..+++++||.+||++....+|+||+|||+
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999776666677888999999999999999999999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+.|||||+||||||+.|++ ++| +|.+||+.|+++.+
T Consensus 330 p~~LDpAllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~ 369 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEI-PLPNEAGRLEIFKIHTAKVK 369 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECC-CCCCHHHHHHHHHHHHHTSC
T ss_pred chhhCHHHhCCCccceeeec-CCcCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999 999 99999999998764
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-44 Score=369.30 Aligned_cols=197 Identities=40% Similarity=0.739 Sum_probs=186.7
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
.+..+..++++|+||+|++++|++|.+.+.. +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3455678999999999999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+++.++|+|++++.++.+|..|+.++||||||||+|+++.+|.....+++.+..+++++||.+||++..+++|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999987666677788899999999999999999999999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+|+.||+|++||||||+.|++ ++| +|.+||+.|+++.+
T Consensus 329 rp~~LD~AllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~ 369 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEF-PLPSEDSRAQILQIHSRKMT 369 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEEC-CCCCHHHHHHHHHHHHHHSC
T ss_pred CchhcCHhHhcCCceeEEEEe-CCcCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999 999 99999999998764
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-44 Score=368.12 Aligned_cols=198 Identities=45% Similarity=0.747 Sum_probs=188.0
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
..+.++..|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||+||+|+|++++.+|+.++
T Consensus 196 ~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 196 TMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred ceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 33556778999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 297 ~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
++++.++|+|++++.+|++|..|+..+||||||||+|+++.+|.....+.+....++++++|.+||++....+|+||+||
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999998766666778889999999999999999999999999
Q ss_pred CCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 377 NRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 377 N~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+++.||+|++||||||+.|++ ++| +|.+||+.|+++.+
T Consensus 356 Nrpd~LDpALlRpGRFD~~I~i-~lPd~~~R~~Ilk~~l~~~~ 397 (467)
T 4b4t_H 356 NRPNTLDPALLRPGRIDRKVEF-SLPDLEGRANIFRIHSKSMS 397 (467)
T ss_dssp SCTTSBCHHHHSTTTCCEEECC-CCCCHHHHHHHHHHHHTTSC
T ss_pred CCcccCChhhhccccccEEEEe-CCcCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999 999 99999999998764
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=364.56 Aligned_cols=198 Identities=44% Similarity=0.719 Sum_probs=187.4
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
.+..+..++++|+||+|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3455678899999999999999999998887 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+++.++|+|+++..++++|..|+.++||||||||+|+++..|.....+++.+..+++++||++|||+....+|+||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999987767777888999999999999999999999999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+++.||+||+||||||+.|++|++| +|.+||+.|+++.+
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~ 361 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS 361 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999995588 99999999998764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-39 Score=354.68 Aligned_cols=192 Identities=41% Similarity=0.786 Sum_probs=168.2
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..++++|+|++|++++|+++.+.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+|+|++++.++++|+.|++.+||||||||||+++++|+...++++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999997655555666778999999999999999999999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+|++||||||+.|++ ++| +|.+||+.|+++.|
T Consensus 630 D~AllRpgRfd~~i~v-~lPd~~~R~~il~~~l~~~~ 665 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYI-PLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp CHHHHSTTTSCCEEEC------CHHHHTTTTTSSCC-
T ss_pred CHhHcCCCcceEEEEE-CCcCHHHHHHHHHHHhcCCC
Confidence 9999999999999999 999 99999999998765
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-37 Score=340.08 Aligned_cols=189 Identities=41% Similarity=0.702 Sum_probs=178.2
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..+.++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++.+|+.++++++++
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34689999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+|+|+++..++++|+.|++++||||||||||+++++|+.. .++...+++++|+.+||++..+.+|+||+|||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999988653 2345578999999999999988899999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|++|+||||||+.|++ ++| +|++||+.|+++.+
T Consensus 354 D~ALrR~GRFd~~I~i-~~Pd~~~R~~IL~~~l~~~~ 389 (806)
T 3cf2_A 354 DPALRRFGRFDREVDI-GIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp CTTTTSTTSSCEEEEC-CCCCHHHHHHHHHHTCSSSE
T ss_pred CHHHhCCcccceEEec-CCCCHHHHHHHHHHHhcCCC
Confidence 9999999999999999 999 99999999998753
No 9
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.5e-36 Score=312.13 Aligned_cols=197 Identities=66% Similarity=1.076 Sum_probs=176.8
Q ss_pred cccccC-CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 219 KFQMEP-NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 219 ~~~~~~-~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
++..+. .+.++|+||+|++++++++.+++.+++++..|..+|.+.|+|+||+||||||||+||+++|++++.||+.+++
T Consensus 3 ~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp --CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred ceeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 344444 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+++.++|+|.+..+++.+|+.|+..+||||||||||+++++++.+.++.+++..+++++|+.+||++..+.+++||++||
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999877666778889999999999999988888899999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+++.||++++||||||+.+.+ ++| +|.+|++.|+++.+
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i-~~Pd~~~R~~Il~~~~~~~~ 203 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVV-DPPDMLGRKKILEIHTRNKP 203 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHTTSC
T ss_pred ChhhhchhhcccCcceeEeec-CCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999 888 99999999998754
No 10
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=5.5e-36 Score=314.29 Aligned_cols=208 Identities=65% Similarity=1.043 Sum_probs=185.5
Q ss_pred CCCCcccccccccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHH
Q 014798 207 PGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 207 ~~~~~~~~~s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~ 286 (418)
++..|+||+|++++..+. ++++|+||+|++++++++.+++.+++++..|..+|.+.|+|++|+||||||||+||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 8 SDSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp ----------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999988777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014798 287 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (418)
Q Consensus 287 el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~ 366 (418)
+++.+|++++++++.+++++.+..+++.+|+.+....|||+||||||.++..++.+.++.+++..+++++++.+|+++..
T Consensus 87 ~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp HTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred HhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999988889999999999999887765555678888999999999999988
Q ss_pred CCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 367 NTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 367 ~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+..++++++||+|+.||++++||||||+.+.+ ++| +|.+||+.|+++.+
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i-~~Pd~~~R~~IL~~~~~~~~ 218 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAI-DAPDVKGREQILRIHARGKP 218 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEEC-CCCCHHHHHHHHHHTTSSSC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEec-CCCCHHHHHHHHHHHHhcCC
Confidence 88899999999999999999999999999999 888 99999999987643
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.8e-33 Score=265.00 Aligned_cols=194 Identities=71% Similarity=1.120 Sum_probs=175.0
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
+.+..++.+|+||+|.+++++++.+.+.++..+..|..+|...|++++|+||||||||++|+++|++++.|++.++++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.+.+.+...++.+|+.+....|+++||||+|.+...++...+++..+..+.+++++.+++++..+.+++||++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 99899999999999999999989999999999999988876666667777889999999999988888899999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.+|++++|+|||++.+.+ ++| +|.+|++.++++.
T Consensus 162 ~l~~~l~r~~rf~~~i~i-~~P~~~~r~~il~~~~~~~ 198 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVV-GLPDVRGREQILKVHMRRV 198 (257)
T ss_dssp TSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHTTS
T ss_pred hCCHHHcCCCcCCeEEEe-CCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999 777 9999999998754
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.6e-33 Score=272.99 Aligned_cols=191 Identities=41% Similarity=0.791 Sum_probs=173.7
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..++++|+||+|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45789999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.++|.....++.+|..+....|+||||||+|.+...++...........+.+++||..|+++....+++||+|||+++.|
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999998876433222233356788999999998877889999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|++++|||||++.+++ ++| +|.+|++.++++.
T Consensus 168 d~al~r~gRf~~~i~i-~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYI-PLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp CGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHTTS
T ss_pred ChHHhcCCccceEEec-CCcCHHHHHHHHHHHHccC
Confidence 9999999999999999 887 9999999998764
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.8e-32 Score=265.17 Aligned_cols=186 Identities=42% Similarity=0.756 Sum_probs=158.2
Q ss_pred CCCcccccccCchHHHHHHHHHHH-HhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVE-FLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~-~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.++++|+||+|++++|+++.+.+. .+.+++.|..++...|+|++|+||||||||+|++++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 467999999999999999998654 5999999999999999999999999999999999999999999999999999888
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
+.+.....++.+|+.+....||++|+||+|.++..++... .....+.+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888889999999999889999999999999887654321 1122357899999999998888899999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
++++||||||+.|++ ++| +|.+||+.|+++
T Consensus 161 ~al~r~gRfd~~i~~-~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 161 PAILRPGRLDKTLFV-GLPPPADRLAILKTITKN 193 (274)
T ss_dssp HHHHSTTSSCEEEEC-CSCCHHHHHHHHHHHTTT
T ss_pred HhhcCcccCCeEEEe-CCcCHHHHHHHHHHHHhc
Confidence 999999999999999 999 999999999864
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=253.45 Aligned_cols=189 Identities=57% Similarity=0.919 Sum_probs=155.3
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhh
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~v 305 (418)
++++|+|++|++++++++.++++.+..++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCC-CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG-GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 306 g~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~-~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
+.+...++.+|..+....|+||||||+|.+..++..... ..+.+....+++++.++++.....++++|+|||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 888899999999999999999999999999877644221 1234556788999999998877788999999999999999
Q ss_pred hhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 385 ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+++|+|||++.+.+ ++| +|.+|++.++++.
T Consensus 161 ~l~~~~R~~~~i~i-~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 161 ALMRPGRLDRHVFI-DLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp GGGSTTSCCEEEEC-CSCCHHHHHHHHHHHHHHT
T ss_pred HHhcCCcCCeEEEe-CCcCHHHHHHHHHHHHHhC
Confidence 99999999999999 777 9999999988764
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=8.1e-31 Score=252.23 Aligned_cols=193 Identities=50% Similarity=0.831 Sum_probs=178.6
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
....++++|+|++|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456789999999999999999998877 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
...+.+.....++.+|..+....|+||||||+|.+..++.....+.+.+....+.+++.+++++....++++|+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999988877666667788899999999999988888999999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.+|++++|++||++.+.+ +.| +|.+|++.++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~-~~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEV-PAPDEKGRLEILKIHTRKM 204 (285)
T ss_dssp GBCHHHHSTTSEEEEEEC-CCCCHHHHHHHHHHHHTTS
T ss_pred hcCHHHcCCCcCCeEEEE-CCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999 777 9999999988654
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=9.1e-31 Score=259.71 Aligned_cols=186 Identities=39% Similarity=0.615 Sum_probs=167.2
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-CCCeeeeehhhHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 301 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs~sefv 301 (418)
..++++|+||+|++++|+.+.+.+.. ++.++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45789999999999999999998877 888888774 35667999999999999999999999999 8999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~~~ 380 (418)
..++|..+..++.+|..++..+|+||||||+|.+..+++.. ......+.+++++.+|+++.. ..+++||+|||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999887653 345567889999999999864 57899999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
.+|++++| ||++.+.+ ++| +|.+|++.|+++.+
T Consensus 161 ~ld~al~r--Rf~~~i~i-~~P~~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYI-PLPEPHARAAMFKLHLGTTQ 196 (322)
T ss_dssp TSCHHHHH--TCCEEEEC-CCCCHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHh--hcCeEEEe-CCcCHHHHHHHHHHHHhcCC
Confidence 99999999 99999999 888 99999999987654
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=9.5e-31 Score=258.58 Aligned_cols=189 Identities=37% Similarity=0.617 Sum_probs=165.4
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
+....++++|+||+|++++++++.+.+.+ +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998877 777877765 5667899999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNR 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-~~~~ViVIatTN~ 378 (418)
+...++|.....++.+|..++...|+||||||||.+..+++.+ .+....+..++++..|+++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999998877543 22334567899999999885 4567999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++.||++++| ||++.+.+ ++| +|.+|++.++++.+
T Consensus 164 ~~~ld~al~~--Rf~~~i~~-~~p~~~~r~~il~~~~~~~~ 201 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYI-PLPDLAARTTMFEINVGDTP 201 (322)
T ss_dssp GGGSCHHHHH--HCCEEEEC-CCCCHHHHHHHHHHHHTTCC
T ss_pred hhhCCHHHHc--ccCeEEEe-CCCCHHHHHHHHHHHhccCC
Confidence 9999999999 99999999 888 99999999998764
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=5.6e-30 Score=247.36 Aligned_cols=205 Identities=66% Similarity=1.051 Sum_probs=173.0
Q ss_pred CCcccccccccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc
Q 014798 209 FPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 209 ~~~~~~~s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
..+.+.+++..+.. ..++++|+|++|.+++++++.+++..+..+..+..++...|+|++|+||||||||+|++++|+++
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 19 SAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp -------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred Cccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 34566666655443 34789999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014798 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (418)
Q Consensus 289 ~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~ 368 (418)
+.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+++++.++++.....
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 98 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999988888888888999999998888999999999999876654333345677889999999999988777
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.++++++||+|+.||++++|++||++.+.+ ++| +|.+||+.++++.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i-~~p~~~~r~~il~~~~~~~ 226 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAI-DAPDVKGREQILRIHARGK 226 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEEC-CCCCHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEe-CCcCHHHHHHHHHHHHccC
Confidence 899999999999999999999999999999 888 9999999988654
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=4.3e-30 Score=244.19 Aligned_cols=192 Identities=69% Similarity=1.094 Sum_probs=169.7
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
...+.++|+|++|.++++.++.+++..+..+..+..++...|+|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45678999999999999999999999998888999999999999999999999999999999999999999999999988
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+.+.....++.+|+.+....|+++|+||+|.++..+..+....+.+..+.+++++.+|++......++++++||+|+.|
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999888899999999999987775433345667788999999999998887789999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|++++|+||||+.+.+ ++| +|.+||+.++++.
T Consensus 168 d~~l~r~~rf~~~i~i-~~p~~~~r~~il~~~~~~~ 202 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAI-DAPDVKGREQILRIHARGK 202 (254)
T ss_dssp CGGGGSTTSSCEEEEC-CSCCHHHHHHHHHHHHTTS
T ss_pred CHHHcCCCcCCeEEee-CCcCHHHHHHHHHHHHcCC
Confidence 9999999999999999 888 9999999988654
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=1.7e-29 Score=253.73 Aligned_cols=188 Identities=37% Similarity=0.625 Sum_probs=158.3
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
....++++|+||+|++++++.+.+.+.. +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999998876 788888876 66778999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~~ 379 (418)
...++|.....++.+|..++...|+||||||+|.+...++.+ .+....+..++|+..|+++.. ..+++||+|||++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999998877542 344566788999999998754 5679999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+.||++++| ||++.+.+ ++| +|.+||+.++++.+
T Consensus 198 ~~ld~al~r--Rf~~~i~i-~~P~~~~r~~il~~~l~~~~ 234 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYI-PLPDLAARTTMFEINVGDTP 234 (355)
T ss_dssp GGSCHHHHH--TCCEEEEC-CCCCHHHHHHHHHHHHTTSC
T ss_pred ccCCHHHHc--ccCEEEEe-CCcCHHHHHHHHHHHHhhCC
Confidence 999999999 99999999 888 99999999987654
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=5.8e-31 Score=251.44 Aligned_cols=191 Identities=63% Similarity=1.017 Sum_probs=165.3
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
..++++|+|++|.+++++++.+++.++..++.|..+|.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCC-CCCCChHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCC
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADI 381 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~-~~~~~~e~~~~L~~LL~emdg~~~~-~~ViVIatTN~~~~ 381 (418)
+.+.+...++.+|+.+....|+||||||+|.+..++..+ ....+.+..+.+++|+..++++... ..++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888999999999999999999999998766321 1122333445678899999887643 45999999999999
Q ss_pred cchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 382 LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 382 LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+|++++|+|||+..+.+ ++| +|.+|++.++++.
T Consensus 164 ld~~l~r~~Rf~~~i~i-~~p~~~~r~~il~~~~~~~ 199 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLV-DKPDFNGRVEILKVHIKGV 199 (268)
T ss_dssp SCGGGGSSSSSCCCCBC-CCCCTTTHHHHHHHHTSSS
T ss_pred cCHhHcCCCCCCeEEEe-cCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999 777 9999999998764
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=3.6e-29 Score=262.09 Aligned_cols=187 Identities=42% Similarity=0.715 Sum_probs=172.9
Q ss_pred CCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
..++|++|+|.+++++++.+.+.. +..++.|..+|...|+++||+||||||||++|+++|.+++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 305 vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
.|.....++.+|..|....|+||||||||.+..+++.. ..+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999999877542 244556788999999998888888999999999999999
Q ss_pred hhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 385 ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+++|+|||++.+.+ ++| +|.+||+.++++.+
T Consensus 356 al~r~gRf~~~i~i-~~P~~~eR~~IL~~~~~~~~ 389 (489)
T 3hu3_A 356 ALRRFGRFDREVDI-GIPDATGRLEILQIHTKNMK 389 (489)
T ss_dssp GGGSTTSSCEEEEC-CCCCHHHHHHHHHHHTTTSC
T ss_pred HHhCCCcCceEEEe-CCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999 777 99999999987654
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.4e-28 Score=254.36 Aligned_cols=188 Identities=38% Similarity=0.606 Sum_probs=158.1
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-CCCeeeeehhh
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSE 299 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs~se 299 (418)
....++++|+||+|++++++.+.+.+.. +..++.|.. +..+++++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998866 788887763 34567999999999999999999999999 89999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~ 378 (418)
+...++|.....++.+|..++...|+||||||||.+...+... ......+.+++||..|+++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998877553 334456788999999998864 578999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++.||++++| ||++.+.+ ++| +|.+||+.|+++.+
T Consensus 281 ~~~ld~al~r--Rf~~~i~i-~~P~~~~r~~il~~~l~~~~ 318 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYI-PLPEAHARAAMFRLHLGSTQ 318 (444)
T ss_dssp GGGSCHHHHT--TCCEEEEC-CCCCHHHHHHHHHHHHTTSC
T ss_pred ccccCHHHHh--hcceEEEe-CCcCHHHHHHHHHHHHhcCC
Confidence 9999999999 99999999 888 99999999987654
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=5.3e-30 Score=282.72 Aligned_cols=193 Identities=41% Similarity=0.779 Sum_probs=170.7
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
...+.++|+|++|++++|+++.+.+.+ +..+..|..++...++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345789999999999999999998887 7888888899999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
++|+|..+..++.+|+.++...||||||||||.++..|+...+..+....+++++||.+||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999887654333344667899999999999988889999999999999
Q ss_pred cchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 382 LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 382 LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
||++++|||||++.|++ ++| +|.+||+.|+++.+
T Consensus 629 ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~l~~~~ 665 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYI-PLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp GSCTTSSGGGTTSCCCC-CCCCCSHHHHHTTTTTSCC-
T ss_pred CCHHHhCccccCceeec-CCCCHHHHHHHHHHHhccCC
Confidence 99999999999999999 888 99999999997654
No 25
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=1.1e-27 Score=234.45 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=118.2
Q ss_pred cCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHH----HhCCCeEEEEcCCcc
Q 014798 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDA 334 (418)
Q Consensus 259 lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A----~~~aP~IIfIDEIDa 334 (418)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++.+.++|..+..++++|..| +...||||||||||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4677899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch-
Q 014798 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS- 402 (418)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-----------~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP- 402 (418)
+++.++.. .........+.+.|+..||+.. ...+++||+|||+++.||++++||||||+.+.+ |-.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~-P~~~ 188 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTRE 188 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC-CCHH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC-cCHH
Confidence 98754321 1112233456677777776332 456799999999999999999999999999987 433
Q ss_pred HHHHHHHHhhcc
Q 014798 403 LMLWFLKTHSQY 414 (418)
Q Consensus 403 ~R~~IL~~~l~~ 414 (418)
+|.+|++.++..
T Consensus 189 ~r~~Il~~~~~~ 200 (293)
T 3t15_A 189 DRIGVCTGIFRT 200 (293)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHhccC
Confidence 999999988764
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.9e-27 Score=234.17 Aligned_cols=184 Identities=37% Similarity=0.622 Sum_probs=158.4
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..++++|+||+|++++++++.+.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 44678999999999999999998887 78888776654 56789999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCC
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--~~~ViVIatTN~~~ 380 (418)
.+.|.....++.+|..+....|+||||||||.+...+.. +.+....+.+++++..+++... ..+++||+|||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999877643 2344566788999999998653 45799999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.||++++| ||+..+.+ ++| +|.+|++.+++.
T Consensus 233 ~l~~~l~~--Rf~~~i~i-~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYI-PLPEASARKQIVINLMSK 266 (357)
T ss_dssp GBCHHHHT--TCCEEEEC-CCCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHh--hCceEEEe-CCcCHHHHHHHHHHHHhh
Confidence 99999999 99999999 777 999999988765
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=9.5e-27 Score=225.38 Aligned_cols=187 Identities=40% Similarity=0.629 Sum_probs=157.8
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
....++++|+|++|.+++++.+.+.+.. +.+++.|..++ ..++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 4456789999999999999999998876 67777776654 457899999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC---CCeEEEEEeC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---TGIIVIAATN 377 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~---~~ViVIatTN 377 (418)
...+.+.+...++.+|..+....|+||||||+|.+...+.... .+......++++..+++.... .+++||++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 8888898899999999999999999999999999987765422 222345677888888877543 5699999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+++.+|++++| ||+..+.+ ++| +|.+|++.++++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~-~~p~~~~r~~il~~~~~~~ 205 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYV-SLPDEQTRELLLNRLLQKQ 205 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEEC-CCCCHHHHHHHHHHHHGGG
T ss_pred ChhhCCHHHHh--hCCeEEEe-CCcCHHHHHHHHHHHHHhc
Confidence 99999999999 99999999 888 9999999888653
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=234.96 Aligned_cols=188 Identities=40% Similarity=0.652 Sum_probs=151.3
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
+.+..++++|+||+|.+++++.+.+.+.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 44566789999999999999999998876 67777777665 34689999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEEeC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATN 377 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--~~~ViVIatTN 377 (418)
+...+.|.....++.+|..+....|+||||||||.+...+..+ ......+.+++|+..++++.. ..+++||+|||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998776432 233456778889999987654 45799999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+++.||++++| ||+..+.+ ++| +|.+|++.++...
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i-~~p~~~~r~~il~~~~~~~ 298 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYV-SLPNEETRLLLLKNLLCKQ 298 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEEC-CCCCHHHHHHHHHHHHTTS
T ss_pred CchhcCHHHHc--CcceEEEc-CCcCHHHHHHHHHHHHHhc
Confidence 99999999999 99999999 777 9999999887653
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.6e-25 Score=247.01 Aligned_cols=189 Identities=42% Similarity=0.703 Sum_probs=173.1
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..+.++|+||+|++++++++.+.+.. +.+++.|..++...+.++||+||||||||+||+++|++++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34679999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+.+.....++.+|+.+....|+++||||+|.+...++.. ..+...+.+.+|+..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876532 3445567889999999999888889999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+++.++|||++.+.+ +.| +|.+|++.++++.+
T Consensus 354 d~al~r~gRf~~~i~i-~~p~~~~r~~il~~~~~~~~ 389 (806)
T 1ypw_A 354 DPALRRFGRFDREVDI-GIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp CTTTTSTTSSCEEECC-CCCCHHHHHHHHHHTTTTSC
T ss_pred CHHHhccccccccccc-CCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999 888 99999999887643
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.5e-24 Score=224.51 Aligned_cols=169 Identities=24% Similarity=0.313 Sum_probs=131.8
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve 302 (418)
.+...|++++|++++++.+.++++.++. |..+|+++||+||||||||++|+++|++++ .+|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3567799999999999999998887654 334668999999999999999999999998 9999999999999
Q ss_pred HhhhcchhHHHHHHHHH---HhCCCeEEEEcCCcccccccCCCCCCCChHH-H---------------HHHHHHHHHhc-
Q 014798 303 MFVGVGASRVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDER-E---------------QTLNQLLTEMD- 362 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A---~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~-~---------------~~L~~LL~emd- 362 (418)
.++|..+. +++.|..| +...||||||||+|+++.+|+....++.... . +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 7888999999999999998865322111110 0 11234666664
Q ss_pred -CCCCCCCeEEEEEeCCCCCcchhhhCCCccce--EEEecCch
Q 014798 363 -GFEGNTGIIVIAATNRADILDSALLRPGRFDR--QVKHVSLS 402 (418)
Q Consensus 363 -g~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr--~I~v~~lP 402 (418)
+....+.++|++|||+++.+|++++||||||+ .+.+ ++|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v-~~p 224 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYV-PLP 224 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEE-CCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEec-CCC
Confidence 33444446667999999999999999999999 5666 666
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=6.1e-22 Score=204.82 Aligned_cols=165 Identities=22% Similarity=0.328 Sum_probs=82.8
Q ss_pred ccccCchHHHHHHHHHHHH-hcCchhhhhcCCc-cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhhc
Q 014798 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg~ 307 (418)
++|+|++++|+.+...+.. ++++..+..++.. .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999999887755 5555555544443 5689999999999999999999999999999999999988 48985
Q ss_pred -chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE-eCCCCCcchh
Q 014798 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSA 385 (418)
Q Consensus 308 -~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat-TN~~~~LD~A 385 (418)
.+..++++|+.+... +++||+|.+.... ......+++++||.+||++.....+ +++ ||+++.||+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788999999998765 3489988875322 2233468999999999999776654 555 9999999999
Q ss_pred hhCCCccceEEEecCch----HHHHHH
Q 014798 386 LLRPGRFDRQVKHVSLS----LMLWFL 408 (418)
Q Consensus 386 LlRpGRFdr~I~v~~lP----~R~~IL 408 (418)
|+||||||+.|++ ++| .|.+||
T Consensus 163 L~rggr~D~~i~i-~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEI-DVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEE-cCCCCccchhhhh
Confidence 9999999999999 999 367776
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=4.9e-21 Score=185.73 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=137.7
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccC---CCceEECCCCChHHHHHHHHHHhc-------CCCeeeeehhhHH
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFV 301 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p---~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs~sefv 301 (418)
+++|++++++.+.+.+..+..+..+...|...+ .++||+||||||||++|+++|+++ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 799999999999999998766777777666543 459999999999999999999987 3489999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD- 380 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~- 380 (418)
..+.|.....++.+|..+ .++||||||+|.+...++. +......++.|+..|+.. ..++++|++||.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYADRM 181 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHH
Confidence 889998888889999887 4579999999999865432 122345677788777743 45689999998654
Q ss_pred ----CcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 381 ----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 381 ----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.++|+|++ ||+..+.+ +.| ++.+|++.++++.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~-~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEF-PDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEE-CCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhCHHHHH--hCCeEEEc-CCcCHHHHHHHHHHHHHHc
Confidence 35799999 99999999 666 9999998887653
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=2.2e-19 Score=172.14 Aligned_cols=170 Identities=22% Similarity=0.340 Sum_probs=123.9
Q ss_pred ccccccCchHHHHHHHHH----HHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 229 TFDDVAGVDEAKQDFMEV----VEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~----v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
..+.++|.++..+++.+. +..++ ..+...+.++||+||||||||++|+++|.+.+.+|+.+++++ .+
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~ 101 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KM 101 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GC
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---Hh
Confidence 345678888777766663 33332 223455678999999999999999999999999999998875 23
Q ss_pred hhc----chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCC
Q 014798 305 VGV----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (418)
Q Consensus 305 vg~----~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~~ 379 (418)
.|. ....++.+|..+....+++|||||||.+...+..+ .......++.|...+++... ...+++|+|||.+
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 102 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 332 23567889999888889999999999997654321 11223456666666776543 3468899999999
Q ss_pred CCcch-hhhCCCccceEEEecCchHHHHHHHHhhc
Q 014798 380 DILDS-ALLRPGRFDRQVKHVSLSLMLWFLKTHSQ 413 (418)
Q Consensus 380 ~~LD~-ALlRpGRFdr~I~v~~lP~R~~IL~~~l~ 413 (418)
+.+++ .+.+ ||+..+.+|++.+|.+|.++..+
T Consensus 178 ~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 178 DVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp HHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 98988 4555 99999999555588887776543
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=3.3e-18 Score=168.25 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=121.3
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
..+.+...+.+|++++|.+++++++.+.+.....+. ..+.++||+||||||||++|+++|++++.+|+.++++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRN-------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT-------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcC-------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 345566677799999999999999999888754221 2345899999999999999999999999999999997
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC------------
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------------ 366 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~------------ 366 (418)
.+. ....+...+.. ...+++|||||||.+.. ...+.|+..++....
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCC
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccc
Confidence 652 22334444433 34578999999999842 234455555544321
Q ss_pred ----CCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 367 ----NTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 367 ----~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
..++++|++||+...++++|++ ||+..+.+ +.| ++.+|++.+++.
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l-~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRL-EFYKDSELALILQKAALK 199 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEEC-CCCCHHHHHHHHHHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeC-CCcCHHHHHHHHHHHHHh
Confidence 1248999999999999999999 99999999 555 888888877654
No 35
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=1.7e-18 Score=173.10 Aligned_cols=132 Identities=28% Similarity=0.377 Sum_probs=97.4
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhh---hcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-hhhc
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFT---AIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV 307 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~---~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~-~vg~ 307 (418)
.|+|++++++.+...+.......... ......+.++||+||||||||++|+++|.+++.||+.++|+++.+. |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998875321111100 0111246789999999999999999999999999999999998754 7776
Q ss_pred c-hhHHHHHHHHH----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 014798 308 G-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (418)
Q Consensus 308 ~-~~~vr~lF~~A----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg 363 (418)
. ...++.+|..+ ....++||||||||.+...+.....+.+...+.+.+.||..|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 5 55677777765 33457899999999998877654444444555688899998885
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=1.5e-18 Score=167.30 Aligned_cols=174 Identities=28% Similarity=0.412 Sum_probs=125.1
Q ss_pred ccccCchHHHHHHHHHHHH-hcCchhhhhc-CCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhhc
Q 014798 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~-l~~p~~~~~l-G~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg~ 307 (418)
++|+|++++++.+...+.. +........+ +...|.++||+||||||||++|+++|.+++.+++.++++++.+ .|++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4599999999999987765 3332221111 1235678999999999999999999999999999999999875 45554
Q ss_pred c-hhHHHHHHHHH-----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEE
Q 014798 308 G-ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (418)
Q Consensus 308 ~-~~~vr~lF~~A-----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~~~~ViVI 373 (418)
. ...+++++..+ ....++||||||+|.+...... .+.+...+.+.+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34566666533 1123679999999999876532 1223333445677888777642 23468888
Q ss_pred EEe----CCCCCcchhhhCCCccceEEEecCch---HHHHHHH
Q 014798 374 AAT----NRADILDSALLRPGRFDRQVKHVSLS---LMLWFLK 409 (418)
Q Consensus 374 atT----N~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~ 409 (418)
+++ +.++.+++++++ ||+..+.+ +.| ++.+|++
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~-~~~~~~~~~~il~ 212 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVEL-TALSAADFERILT 212 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEEC-CCCCHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEc-CCcCHHHHHHHHH
Confidence 884 577889999998 99988999 555 7788887
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=1.6e-18 Score=183.47 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=117.0
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH---
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--- 302 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve--- 302 (418)
...-.+|++|++++++.+.+.+..-.-.. .. .+..++|+||||||||+||+++|+.++.++..+++..+.+
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 34556889999999999987655311111 01 2446999999999999999999999999999998876543
Q ss_pred ------HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC---------
Q 014798 303 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------- 367 (418)
Q Consensus 303 ------~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~--------- 367 (418)
.|+|.....+...|..+....| |+||||||.+...+. ....+.|+..||.....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 5677777778888888766665 999999999976542 12456677777653311
Q ss_pred ----CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 368 ----TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 368 ----~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
.++++|+|||+++.++++|++ ||+ .|.+ +.| +|.+|++.|+
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~-~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINI-AGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEEC-CCCCHHHHHHHHHHTH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeee-CCCCHHHHHHHHHHHH
Confidence 568999999999999999999 996 6888 555 9999999987
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=1.5e-17 Score=162.89 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=117.1
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
...|.++..+.+|++++|.+++++.+.+.+.. ...|..+|++||||||||++|+++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 45678888899999999999999988887772 2345568888999999999999999999999999998
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhC-----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~-----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
++.. ...+++.+...... .++||||||+|.+.. .+.. +.|+..++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~---~~L~~~le~~--~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQ---RHLRSFMEAY--SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHH---HHHHHHHHHH--GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHH---HHHHHHHHhC--CCCcEE
Confidence 7742 33455555443332 578999999999851 1223 3344444422 245789
Q ss_pred EEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHh
Q 014798 373 IAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTH 411 (418)
Q Consensus 373 IatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~ 411 (418)
|++||.++.+++++++ ||. .+.+ +.| +|.+|++..
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~-~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITF-GQPTDEDKIEMMKQM 177 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEEC-CCCCHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEe-CCCCHHHHHHHHHHH
Confidence 9999999999999999 885 6888 666 666665543
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=5.4e-18 Score=149.94 Aligned_cols=157 Identities=23% Similarity=0.366 Sum_probs=110.8
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+.+|++++|.++..+++.+.+. . ..+.+++|+||||||||++|++++.++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35679999999987777666543 2 224579999999999999999999986 7889999
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
++.++. ..+.+.....+++++..+. ...++||+|||+|.+...+... ........+..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhh---c----cCCeEE
Confidence 998876 2344555567778887664 4568899999999997554221 1112223333333 2 245788
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHH
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFL 408 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL 408 (418)
|++||.++ .+++++++ ||+ .+.+ +.| +|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~-~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFV-AEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEEC-CCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeec-CCCCHHHHHHHh
Confidence 99998776 78999999 998 5888 666 666554
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.72 E-value=3.5e-17 Score=159.31 Aligned_cols=163 Identities=26% Similarity=0.345 Sum_probs=116.9
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
+..+.+|++++|.++.++.+.+.+....... ..+.+++|+||||||||++|+++|.+++.+|+.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~-------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARK-------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHC-------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccC-------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4456789999999999999998887653211 23468999999999999999999999999999999876521
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc-----CCC--------CCCCe
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GFE--------GNTGI 370 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd-----g~~--------~~~~V 370 (418)
...+...|..+ ...+++|||||+|.+.. .....+..++.+.. +.. ...++
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 12222222221 14578999999999842 22333444444321 000 11358
Q ss_pred EEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 371 IVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 371 iVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.+|++||+++.+++++++ ||+..+.+ +.| ++.++++.++..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l-~~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHL-EYYTPEELAQGVMRDARL 183 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEEC-CCCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEec-CCCCHHHHHHHHHHHHHh
Confidence 899999999999999998 99888999 555 888888877653
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=8.3e-17 Score=159.60 Aligned_cols=163 Identities=23% Similarity=0.341 Sum_probs=115.4
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHH
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 303 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve~ 303 (418)
+..+|++++|.+++++.+..+.+.+.... ..++++||+||||||||++|+++|.+++ .||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~~-------~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREGK-------IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTTC-------CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 45569999999999999888887766543 2346899999999999999999999986 48888887663221
Q ss_pred h-------------------------------------------------hhcchhHHHHHHHHHHh---------CCCe
Q 014798 304 F-------------------------------------------------VGVGASRVRDLFKKAKE---------NAPC 325 (418)
Q Consensus 304 ~-------------------------------------------------vg~~~~~vr~lF~~A~~---------~aP~ 325 (418)
+ .+.....+++.+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11124456666665543 1278
Q ss_pred EEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe-----------CCCCCcchhhhCCCccce
Q 014798 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-----------NRADILDSALLRPGRFDR 394 (418)
Q Consensus 326 IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT-----------N~~~~LD~ALlRpGRFdr 394 (418)
||||||+|.+. ...++.|+..++.... .++++++. |.++.+++++++ ||..
T Consensus 192 vl~IDEi~~l~--------------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLD--------------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSB--------------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccC--------------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 99999999984 2355667776664332 34444443 347789999999 9976
Q ss_pred EEEecCch--HHHHHHHHhhcc
Q 014798 395 QVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 395 ~I~v~~lP--~R~~IL~~~l~~ 414 (418)
+.+++++ ++.+|++.+++.
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHH
T ss_pred -EEecCCCHHHHHHHHHHHHHH
Confidence 7883444 888999877654
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=3e-17 Score=145.39 Aligned_cols=152 Identities=24% Similarity=0.376 Sum_probs=108.2
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++|.++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 35679999999987776665442 2 124579999999999999999999987 7888999
Q ss_pred ehhhHHHH--hhhcchhHHHHHHHHHHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFVEM--FVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefve~--~vg~~~~~vr~lF~~A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
++..+... +.+.....++.++..+... .|++|||||+|.+...+... ....+ ..+.|...++ ...+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~---~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALD---AGNILKPMLA----RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCC---THHHHHHHHH----TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchH---HHHHHHHHHh----cCCeeE
Confidence 98877632 3444555677777777654 68899999999997554311 11122 2233333333 245889
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP 402 (418)
|++||.++ .+|+++++ ||+. +.+ +.|
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~~-i~i-~~p 186 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQQ-ILV-EQP 186 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEEE-EEC-CSC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcCc-ccC-CCC
Confidence 99999765 68999999 9985 777 554
No 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=3.6e-16 Score=156.76 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=88.8
Q ss_pred cccCchHHHHHHHHHHHH-hcCchh--------------h---hhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 232 DVAGVDEAKQDFMEVVEF-LKKPER--------------F---TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~-l~~p~~--------------~---~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
+|+|++++++.+...+.. ++.... . ..-....+.++||+||||||||++|+++|.+++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999987732 111110 0 0011234568999999999999999999999999999
Q ss_pred eeehhhHH-HHhhhcc-hhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--
Q 014798 294 SISGSEFV-EMFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-- 365 (418)
Q Consensus 294 ~vs~sefv-e~~vg~~-~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-- 365 (418)
.++++.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+...+...+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 334555555432 235789999999999876543222222222346777777777541
Q ss_pred -----------------CCCCeEEEEEeC
Q 014798 366 -----------------GNTGIIVIAATN 377 (418)
Q Consensus 366 -----------------~~~~ViVIatTN 377 (418)
...++++|+++|
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~ 210 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGA 210 (376)
T ss_dssp ---------------CEECTTCEEEEEEC
T ss_pred cccccccccCCcceEEEecCCeEEEecCC
Confidence 124578888887
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=5.2e-16 Score=152.22 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=109.3
Q ss_pred CCCccccccc-Cc--hHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 225 NTGVTFDDVA-GV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 225 ~~~~~f~dV~-G~--de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
.+..+|++++ |. ..+...+..+++ .+. ..+.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~---~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALE---NLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHH---TTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHh---CcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899997 43 333333333332 221 234589999999999999999999988 8999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
++.+.+.+.........|..... .+++|||||+|.+..+ ...++.+..++..+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 98876655433222233433332 3789999999998532 122333444444332 2234566666666
Q ss_pred CC---CcchhhhCCCccc--eEEEecCch--HHHHHHHHhhcc
Q 014798 379 AD---ILDSALLRPGRFD--RQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~---~LD~ALlRpGRFd--r~I~v~~lP--~R~~IL~~~l~~ 414 (418)
+. .++++|++ ||+ ..+.+++ . +|.+|++.++..
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 65 68999998 886 6778856 6 999999988754
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.9e-16 Score=166.26 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=113.9
Q ss_pred ccccccccCCCCcccccccCchHHHHHHHHHHHHhcC--chhhhhcCC---ccCCCceEECCCCChHHHHHHHHHHhcCC
Q 014798 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKK--PERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (418)
Q Consensus 216 s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~--p~~~~~lG~---~~p~gVLL~GPPGTGKT~LArAIA~el~~ 290 (418)
....+|.++..+.+|+|++|.+++++++.+++..... +..|...|. ..++++||+||||||||++|+++|++++.
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456899999999999999999999999988875321 222333333 25678999999999999999999999999
Q ss_pred CeeeeehhhHHHHhhhcc-------hhHHHHHHHHH-----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 291 PFFSISGSEFVEMFVGVG-------ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 291 pfi~vs~sefve~~vg~~-------~~~vr~lF~~A-----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
+++.++++++........ ...++.+|..+ ....++||||||+|.+.... .+ .++.|+
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~---~l~~L~ 172 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RG---GVGQLA 172 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TT---HHHHHH
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HH---HHHHHH
Confidence 999999987543322110 01133444443 23568999999999996432 11 233344
Q ss_pred HHhcCCCCCCCeEEEEEeCC--CCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 359 TEMDGFEGNTGIIVIAATNR--ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~--~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
..++. .++.+|+++|. ...+. .+. |+...+.+ +.| ++.++++..+
T Consensus 173 ~~l~~----~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f-~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 173 QFCRK----TSTPLILICNERNLPKMR-PFD---RVCLDIQF-RRPDANSIKSRLMTIA 222 (516)
T ss_dssp HHHHH----CSSCEEEEESCTTSSTTG-GGT---TTSEEEEC-CCCCHHHHHHHHHHHH
T ss_pred HHHHh----cCCCEEEEEcCCCCccch-hhH---hceEEEEe-CCCCHHHHHHHHHHHH
Confidence 43332 12234444443 33443 343 44567888 666 7777776554
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.64 E-value=2.6e-15 Score=135.61 Aligned_cols=156 Identities=26% Similarity=0.269 Sum_probs=109.5
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~v 295 (418)
+.+...+.+|++++|.++.++.+.+.+..- .+.+++|+||||||||++|++++.++ ..+++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 455667788999999999999888776521 12259999999999999999999875 4567777
Q ss_pred ehhhHHHHhhhcchhHHHHHHHHHH------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014798 296 SGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (418)
Q Consensus 296 s~sefve~~vg~~~~~vr~lF~~A~------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ 369 (418)
++++... ...++..+.... ...+++|+|||+|.+.. . ..+.|+..++.. ..+
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~--~~~ 132 (226)
T 2chg_A 75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------D---AQAALRRTMEMY--SKS 132 (226)
T ss_dssp ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------H---HHHHHHHHHHHT--TTT
T ss_pred ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------H---HHHHHHHHHHhc--CCC
Confidence 7765321 122333333322 24688999999999842 2 233344444432 346
Q ss_pred eEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 370 IIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 370 ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
+.+|++||.++.+++++.+ ||. .+.+++++ +..++++.++.
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999 887 77884444 77788776654
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=1.1e-15 Score=147.79 Aligned_cols=164 Identities=21% Similarity=0.298 Sum_probs=109.5
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-----
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve----- 302 (418)
++++|++++++.+...+......-.. ..++..+++|+||||||||++|+++|+.+ +.+++.++|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC---TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC---CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46889999999999888764211000 01122369999999999999999999987 66799999987532
Q ss_pred Hhhhcc-----hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC---------CC
Q 014798 303 MFVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NT 368 (418)
Q Consensus 303 ~~vg~~-----~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~---------~~ 368 (418)
.+.|.. ......+.........+||||||+|.+.. ...+.|+..++.... -.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 233211 01011233333344558999999999842 244455555543210 13
Q ss_pred CeEEEEEeCC--------------------------CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 369 GIIVIAATNR--------------------------ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 369 ~ViVIatTN~--------------------------~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
++++|+|||. .+.++++|++ ||+..+.+ ..| ++.+|++.++++
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~-~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVF-RPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEEC-CCCCHHHHHHHHHHHTHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEe-CCCCHHHHHHHHHHHHHH
Confidence 5789999998 4467888887 99998988 445 888888877653
No 48
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=2.1e-15 Score=164.83 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=113.4
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCC-CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhh
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVG 306 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg 306 (418)
++|+|++++++.+.+.+......... ...|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKD----PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSC----TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCC----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 57899999999999988875432210 11232 59999999999999999999987 789999999999876554
Q ss_pred cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------CCCCeEEEEEeC
Q 014798 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAATN 377 (418)
Q Consensus 307 ~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~~~ViVIatTN 377 (418)
. ...+....+...++||||||||.+. . ..++.|+..|+... ...++++|+|||
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAH-----------P---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSC-----------H---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccC-----------H---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 4 2223344455667899999999873 2 34455555554321 224689999999
Q ss_pred CCCC------------cchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 378 RADI------------LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 378 ~~~~------------LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
.+.. ++|+|++ |||..+.+ +.| ++.+|++.++.
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~-~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVF-HSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEEC-C--CHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEec-CCCCHHHHHHHHHHHHH
Confidence 7554 6788887 99999999 555 78888887664
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.61 E-value=8.7e-16 Score=159.52 Aligned_cols=150 Identities=21% Similarity=0.316 Sum_probs=108.5
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCee
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi 293 (418)
...+-++++|+|.++..+.+.+++.. . .+.++||+||||||||++|+++|.++ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r---~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR---R---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC---S---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc---c---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34566899999999998887776542 1 13479999999999999999999986 78899
Q ss_pred eeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014798 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (418)
Q Consensus 294 ~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVI 373 (418)
.++++ ..|.|....+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEE
Confidence 99988 66778788899999999998889999999 10 112334444443 3468999
Q ss_pred EEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 374 AATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 374 atTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
++||.++ .+|++++| ||+. +.+ +.| ++.+||+.++..
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~~-i~v-~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQP-IQV-DQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEEE-EEC-CCCCHHHHHHHHHHTTTT
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCcc-cee-CCCCHHHHHHHHHHHHHH
Confidence 9999987 69999999 9985 888 777 889999876643
No 50
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=3.5e-16 Score=136.95 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=81.9
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhcc
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG 308 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~~ 308 (418)
+++|.++..+++.+.+..+.... .+|||+||||||||++|++++.+. +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~----------~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETD----------IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCC----------SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 67899999999988887754332 379999999999999999999886 78999 999876543
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
......|+.+. .++|||||||.+.. + ....|+..|.. ...++.+|+|||++
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~-----------~---~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR-----------E---QQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH-----------H---HHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH-----------H---HHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 34556677663 35999999999853 2 23344444432 23457899999964
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=3.5e-15 Score=147.28 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeeh
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISG 297 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~ 297 (418)
...+++++|.++..+++.+.+..... ...+.+++|+||||||||++|+++++++ +.++++++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34568999999999988876654311 1235689999999999999999999988 888999998
Q ss_pred hhHH------HHhh----------hcchhH-HHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 298 SEFV------EMFV----------GVGASR-VRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 298 sefv------e~~v----------g~~~~~-vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
.... .... +..... ...++..... ..|+||||||+|.+...+ ..+..+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 7522 1111 111222 3344444433 348899999999996431 13567788888
Q ss_pred HhcCCCCCCCeEEEEEeCCC---CCcchhhhCCCccce-EEEecCch--HHHHHHHHhhc
Q 014798 360 EMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDR-QVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~---~~LD~ALlRpGRFdr-~I~v~~lP--~R~~IL~~~l~ 413 (418)
.++......++.+|++||.+ +.+++++.+ ||.. .+.++++. +..+|++.+++
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 77655324578999999987 788999998 8875 77773333 88888887765
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.60 E-value=3.2e-15 Score=163.13 Aligned_cols=162 Identities=21% Similarity=0.303 Sum_probs=114.2
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-------
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------- 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~------- 303 (418)
++|+|++++++.+.+.+......-. . ..++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~--~-~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS--C-TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC--C-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4588999999988887765332110 0 00122369999999999999999999999999999999998764
Q ss_pred -----hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC---------CCC
Q 014798 304 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 369 (418)
Q Consensus 304 -----~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~---------~~~ 369 (418)
|+|.... ..+....+...++||||||||.+. ..+++.|+..||...- -.+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 3332221 223444455667999999999873 2355666666653210 145
Q ss_pred eEEEEEeCCCC-------------------------CcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 370 IIVIAATNRAD-------------------------ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 370 ViVIatTN~~~-------------------------~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
+++|+|||... .++++|++ |||..|.++++. ++.+|++.+++
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 88999999754 57788888 999999994433 88888887765
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.59 E-value=3.6e-15 Score=154.42 Aligned_cols=152 Identities=28% Similarity=0.332 Sum_probs=110.3
Q ss_pred cCCCCcccccccCchHHH---HHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k---~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
+...+.+|++++|++.++ ..+...+..-+- .++||+||||||||++|+++|++++.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~------------~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCC------------CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCC------------cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 445567999999999998 556555553211 36999999999999999999999999999998753
Q ss_pred HHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014798 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat 375 (418)
.+...+++++..+.. ..++||||||||.+... ..+.|+..++. ..+++|++
T Consensus 86 -------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 -------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEE
T ss_pred -------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEec
Confidence 344567777776653 46789999999998533 23346666653 34777777
Q ss_pred e--CCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhcc
Q 014798 376 T--NRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 376 T--N~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
| |....++++|++ |+. .+.+.+++ +..++++.++.+
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 7 445589999999 886 56673444 888888888765
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.59 E-value=1.9e-15 Score=132.12 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=90.8
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhH
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~ 311 (418)
+++|.+++.+++.+.+..+... +.+|+|+||||||||++|++++.+.. +|+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 5789999999999888765322 24799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----cchhh
Q 014798 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSAL 386 (418)
Q Consensus 312 vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~-~~----LD~AL 386 (418)
.+.+|+.+. .++|||||+|.+.. +.+..+.+++.+.. ..++.+|+|||++ +. +++.|
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHHH
Confidence 456666653 46999999999853 23444445554432 3568899999854 33 33444
Q ss_pred hCCCcc-ceEEEecC
Q 014798 387 LRPGRF-DRQVKHVS 400 (418)
Q Consensus 387 lRpGRF-dr~I~v~~ 400 (418)
.. |+ ...|.+|+
T Consensus 129 ~~--rl~~~~i~lPp 141 (143)
T 3co5_A 129 AG--LFSESVVRIPP 141 (143)
T ss_dssp HH--HSSSEEEEECC
T ss_pred HH--HhcCcEEeCCC
Confidence 43 43 33566644
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=3.6e-15 Score=153.82 Aligned_cols=165 Identities=18% Similarity=0.270 Sum_probs=107.2
Q ss_pred CCCccccccc-CchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 014798 225 NTGVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (418)
Q Consensus 225 ~~~~~f~dV~-G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~s 298 (418)
.+..+|++++ |..... ....+......+. . +.+++|+||||||||+||+++|+++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3567999987 544322 2222222233332 1 4589999999999999999999988 8999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
++...+.+.........|.......++||||||+|.+..+ +..++.+..++..+. .....+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~---~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELH---DSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHH---TTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEECCC
Confidence 9877665443322223444444436889999999998532 122333434444332 2233444544444
Q ss_pred CCC---cchhhhCCCccc--eEEEecCch---HHHHHHHHhhc
Q 014798 379 ADI---LDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 379 ~~~---LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~ 413 (418)
+.. ++++|++ ||+ ..+.+ +.| +|.+|++.+++
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l-~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKL-EPPDEETRKSIARKMLE 277 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEe-CCCCHHHHHHHHHHHHH
Confidence 554 8899999 886 67777 666 89999988765
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=2.4e-15 Score=166.66 Aligned_cols=162 Identities=22% Similarity=0.342 Sum_probs=108.1
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-+|++++|.++..+.+.+++. .. .+++++|+||||||||++|+++|+++ +.+++++
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~---~~---------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH---CS---------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh---cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45689999999977776666542 21 23579999999999999999999987 8899999
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
+++.+. ..+.|....+++.+|..+... .|+||||||+|.+....... +... ..+.|...++ ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~---~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVD---AGNMLKPALA----RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHH---HHHHHHHHHh----CCCeEE
Confidence 999886 457788888899999998875 68999999999997543221 1122 2233333333 245789
Q ss_pred EEEeCCCC----CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 373 IAATNRAD----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 373 IatTN~~~----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
|++||.++ .+|++|.| ||+. +.+ +.| ++.+|++.+++
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l-~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYV-DEPTVEETISILRGLKE 346 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEE-CCCCHHHHHHHHHHHHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEe-CCCCHHHHHHHHHhhhh
Confidence 99999764 47999999 9996 888 666 88999986554
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=4.9e-15 Score=145.50 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=104.2
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH--HHHhh
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF--VEMFV 305 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef--ve~~v 305 (418)
-.+++++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++... .+.+.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3467899999998877665542 1379999999999999999999999999999987421 11222
Q ss_pred hcchhH-HHHHHHHHHhCC---CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC---------CCCCCeEE
Q 014798 306 GVGASR-VRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIV 372 (418)
Q Consensus 306 g~~~~~-vr~lF~~A~~~a---P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~---------~~~~~ViV 372 (418)
|..... ....|. .... .+|+||||+|.+.. .+.+.|+..|+.. .....+++
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211000 000000 0112 27999999999742 2344444444321 12346888
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|+|+|..+ .+++++++ ||+..+.+ +.| +|.+|++.++..
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i-~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHL-TYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEEC-CCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEc-CCCCHHHHHHHHHhcccc
Confidence 89998554 38999999 99988999 777 899999988754
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.58 E-value=1.6e-14 Score=131.53 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=111.1
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeee--e
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI--S 296 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v--s 296 (418)
..+.++..+.+|++++|.++.++.+.+.+..-+ .+..++|+||||||||++++++++++....... .
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~-----------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGR-----------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTC-----------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 345566777889999999999998888776422 234699999999999999999998874322110 0
Q ss_pred ------hhhHHHH----hh------hcchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHH
Q 014798 297 ------GSEFVEM----FV------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 356 (418)
Q Consensus 297 ------~sefve~----~v------g~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~ 356 (418)
+..+... +. ......++++++.+. ...+.+|+|||+|.+. ...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~ 145 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNA 145 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHH
Confidence 0010000 00 012233555555442 2357899999999973 234566
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhcc
Q 014798 357 LLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 357 LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
|+..++.. ..++.+|++||.++.+++++.+ |+ ..+.+++++ +..++++.++.+
T Consensus 146 l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 146 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 66666643 4568999999999999999988 65 577783443 778888877643
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.2e-14 Score=144.18 Aligned_cols=159 Identities=21% Similarity=0.348 Sum_probs=113.1
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----------CCCeeeee
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSIS 296 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----------~~pfi~vs 296 (418)
...++++|.++..+++.+.+...... ..+.+++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 34589999999999999888764332 234579999999999999999999987 89999999
Q ss_pred hhhHH-----------HHhh-------hcc-hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHH-HHH
Q 014798 297 GSEFV-----------EMFV-------GVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQ 356 (418)
Q Consensus 297 ~sefv-----------e~~v-------g~~-~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~-L~~ 356 (418)
|.+.. ..+. +.. ...+..++..+... ++||||||+|.+..... ... +..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~----------~~~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG----------GDIVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT----------SHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC----------CceeHHH
Confidence 87643 1111 111 12234444444333 34999999999964321 123 445
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCC---CCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 357 LLTEMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 357 LL~emdg~~~~~~ViVIatTN~~---~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
|+... .++.+|++||.+ +.+++++++ ||...+.++++. +..+|++.+++
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 54433 568999999987 678999988 888889994444 88888888765
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=3.5e-15 Score=163.10 Aligned_cols=149 Identities=22% Similarity=0.330 Sum_probs=108.8
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeee
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~ 294 (418)
...-++++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|.++ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 4556799999999999988776542 123479999999999999999999986 788888
Q ss_pred eehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014798 295 ISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (418)
Q Consensus 295 vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIa 374 (418)
+++ ...|.|..+.+++.+|..+....|+||||| +. ....+.|+..++ ...+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEe
Confidence 887 456778888899999999999999999999 10 113344444444 45689999
Q ss_pred EeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 375 ATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 375 tTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
+||..+ .+|++++| ||+ .+.+ +.| ++.+||+.+...
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v-~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQV-DQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEEC-CCCCHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEe-CCCCHHHHHHHHHHHHHH
Confidence 999988 79999999 995 5889 777 899999866543
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=2e-14 Score=141.13 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=95.7
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC-------CCe-----
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPF----- 292 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~-------~pf----- 292 (418)
.++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++|..++ .+|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35689999999998776543221 1 11 123699999999999999999999886 232
Q ss_pred ---------------------eeeehhhHHHHhhhcchhHHHHHHHHH---------HhCCCeEEEEcCCcccccccCCC
Q 014798 293 ---------------------FSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDAVGRQRGTG 342 (418)
Q Consensus 293 ---------------------i~vs~sefve~~vg~~~~~vr~lF~~A---------~~~aP~IIfIDEIDal~~~r~~~ 342 (418)
+.+......+.+.|. ..++..+..+ ....++||||||+|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 111111101112221 0111122211 011368999999999843
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCC----CCCCeEEEEEeCCCC-CcchhhhCCCccceEEEecCch----HHHHHHH
Q 014798 343 IGGGNDEREQTLNQLLTEM----DGFE----GNTGIIVIAATNRAD-ILDSALLRPGRFDRQVKHVSLS----LMLWFLK 409 (418)
Q Consensus 343 ~~~~~~e~~~~L~~LL~em----dg~~----~~~~ViVIatTN~~~-~LD~ALlRpGRFdr~I~v~~lP----~R~~IL~ 409 (418)
.....+.+++++- .... ...++++|+|||..+ .++++|++ ||+..+.+ +.| .|.+|++
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l-~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEV-LSPRDVETRVEVIR 229 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEEC-CCCCSHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEc-CCCCcHHHHHHHHH
Confidence 2233333443331 0000 113689999999755 89999999 99998999 555 5668876
Q ss_pred Hh
Q 014798 410 TH 411 (418)
Q Consensus 410 ~~ 411 (418)
.+
T Consensus 230 ~~ 231 (350)
T 1g8p_A 230 RR 231 (350)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.57 E-value=5e-15 Score=142.85 Aligned_cols=158 Identities=27% Similarity=0.316 Sum_probs=113.1
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeee
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~ 294 (418)
.|.++..+.+|++++|.+++++.+.+.+.. ...| +++|+||||||||++|+++|+++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 466778889999999999998887765532 1222 49999999999999999999986 345778
Q ss_pred eehhhHHHHhhhcchhHHHHHHHHHH------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014798 295 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (418)
Q Consensus 295 vs~sefve~~vg~~~~~vr~lF~~A~------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~ 368 (418)
+++++.. +...+++.+.... ...+.||+|||+|.+.. ...+.|+..++.. ..
T Consensus 74 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~ 131 (319)
T 2chq_A 74 MNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SK 131 (319)
T ss_dssp EETTSTT------CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SS
T ss_pred EeCcccc------ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CC
Confidence 8877632 1222333333322 14578999999999842 2355566666643 35
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhcc
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
++++|++||.++.+++++.+ |+. .+.+++++ +..++++.++++
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999 775 67783444 777777766643
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=3.5e-15 Score=162.83 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=118.5
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-+|++++|.++..+.+.+.+. .. .+.+++|+||||||||++|+++|.++ +..++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~~---------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---RR---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---SS---------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---cc---------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34578999999988887666543 21 24579999999999999999999876 5567777
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVI 373 (418)
++..+. ..+.|..+.+++.+|..+....++||||||+|.+....+.. .......+.|.. +-....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~~----~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKP----LLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHSS----CSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHHH----HHhCCCeEEE
Confidence 777766 35667778899999999988788999999999997654321 111222222222 2234568899
Q ss_pred EEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 374 AATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 374 atTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
++||.++ .+|++|.| ||+ .+.+ +.| +|.+|++.+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v-~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDI-TEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEEC-CCCCHHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEc-CCCCHHHHHHHHHHHHH
Confidence 9998643 57899999 998 5888 777 88999987654
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=3.8e-14 Score=137.12 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=110.3
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC-----CCee
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi 293 (418)
..|.++..+.+|++++|.+++++.+.+.+..- +.| +++|+||||||||++|+++|+++. .+++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 35667788899999999999999888877632 122 499999999999999999999863 3467
Q ss_pred eeehhhHHHHhhhcchhHHHHHHHHHH------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 294 SISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 294 ~vs~sefve~~vg~~~~~vr~lF~~A~------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
.+++++... ...+++.+.... ...+.+|+|||+|.+.. ...+.|+..++.. .
T Consensus 81 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~ 138 (327)
T 1iqp_A 81 ELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--S 138 (327)
T ss_dssp EEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--T
T ss_pred EeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--C
Confidence 777765422 112222222211 14578999999999842 2344555555532 3
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.++.+|++||.++.+++++.+ |+. .+.+++++ +..++++.+++
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 467889999999999999998 876 67774444 66677766554
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=1.8e-14 Score=137.17 Aligned_cols=151 Identities=24% Similarity=0.308 Sum_probs=93.7
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHH-
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM- 303 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefve~- 303 (418)
.+|++++|.+...+++.+.+..+... +.++||+||||||||++|++++.... .||++++|+++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57999999999999988877765432 24799999999999999999999874 78999999976432
Q ss_pred ----hhhcchh-------HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc-----C-CCC
Q 014798 304 ----FVGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----G-FEG 366 (418)
Q Consensus 304 ----~vg~~~~-------~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd-----g-~~~ 366 (418)
..|.... .....|..+ ..++|||||||.+.. +.+..+.++++.-. + ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCcccc
Confidence 2221100 011233333 346999999999843 22334444444311 0 011
Q ss_pred CCCeEEEEEeCCC-------CCcchhhhCCCccc-eEEEecCchHH
Q 014798 367 NTGIIVIAATNRA-------DILDSALLRPGRFD-RQVKHVSLSLM 404 (418)
Q Consensus 367 ~~~ViVIatTN~~-------~~LD~ALlRpGRFd-r~I~v~~lP~R 404 (418)
..++.+|+|||.+ ..++++|.+ ||+ ..+.+|++.+|
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R 182 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRER 182 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGC
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhh
Confidence 2458899999974 246788888 885 45666444455
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-14 Score=144.05 Aligned_cols=157 Identities=8% Similarity=0.040 Sum_probs=108.1
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeeeehhhHH-
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFV- 301 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~vs~sefv- 301 (418)
+.|.++..+++...+...- ....|.+++|+||||||||+++++++.++ .+.+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 5566666666665555421 12246689999999999999999999988 3567888886532
Q ss_pred ---------HHhhhc------chhHHHHHHHHH--HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 014798 302 ---------EMFVGV------GASRVRDLFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (418)
Q Consensus 302 ---------e~~vg~------~~~~vr~lF~~A--~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~ 364 (418)
+.+.|. ....++.+|... ....++||+|||+|.+. . +..+..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--
Confidence 223222 345677888764 35678999999999996 1 346777776443
Q ss_pred CCCCCeEEEEEeCCCCC----cchhhhCCCccc-eEEEecCch--HHHHHHHHhhcc
Q 014798 365 EGNTGIIVIAATNRADI----LDSALLRPGRFD-RQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 365 ~~~~~ViVIatTN~~~~----LD~ALlRpGRFd-r~I~v~~lP--~R~~IL~~~l~~ 414 (418)
..+.++++|+.+|..+. |++++++ ||+ +.|.++++. +-.+|++..++.
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23457899999998875 3445556 886 578884444 778888877654
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.7e-14 Score=141.42 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=107.1
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC------CC
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------VP 291 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~------~p 291 (418)
...+.++..+.+|++++|.+++++.+...+. .. . +.+++|+||||||||++|+++|++++ ..
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 3467778888999999999999987766543 21 1 12499999999999999999998853 46
Q ss_pred eeeeehhhHHHHhhhcchhHHHHHHHHHH----------------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHH
Q 014798 292 FFSISGSEFVEMFVGVGASRVRDLFKKAK----------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (418)
Q Consensus 292 fi~vs~sefve~~vg~~~~~vr~lF~~A~----------------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~ 355 (418)
++.+++++.. +...+++.+.... ...+.||||||+|.+... ..+
T Consensus 92 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~~~ 151 (353)
T 1sxj_D 92 ILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------AQS 151 (353)
T ss_dssp EEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------HHH
T ss_pred eEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------HHH
Confidence 7777776531 1112222222111 124569999999998432 234
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 356 ~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.|+..|+... ....+|++||.++.+++++++ |+. .+.+++++ +..++++..++
T Consensus 152 ~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 152 ALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 4555555332 346778889999999999998 886 67773333 66777776553
No 68
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.53 E-value=6.8e-15 Score=171.72 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=109.6
Q ss_pred CCCcccccccCchHHHHHHHHHHHH-hcC----------chhhhh------cCCc----------cCCC--ceEECCCCC
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKK----------PERFTA------IGAR----------IPKG--VLLVGPPGT 275 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~-l~~----------p~~~~~------lG~~----------~p~g--VLL~GPPGT 275 (418)
...++|+||.|.+++|+++.+.+.+ ++. ++.|.. .|.. +|+| ++|||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3459999999999999999998877 422 455655 3333 6777 999999999
Q ss_pred hHHHHHHHHHHhc---CCCeeeeehhh----HH--------HHhhhc----chhHHHHHHHHHHhCCCeEEEEcCCcccc
Q 014798 276 GKTLLAKAIAGEA---GVPFFSISGSE----FV--------EMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 276 GKT~LArAIA~el---~~pfi~vs~se----fv--------e~~vg~----~~~~vr~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
|||+||+++|.+. +-|.++|+..+ +. +.|+++ +++.++.+|..|++.+||+||+||+|++.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998766 56666666554 33 455666 78899999999999999999999999999
Q ss_pred cccC---CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 337 RQRG---TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 337 ~~r~---~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
+.+. ........-..+.++|+|.+|++.....+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 9843 211111244567899999999987777788888 7775
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=3.7e-14 Score=136.93 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=111.2
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeee
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~ 294 (418)
.+.++..+.+|++++|.++.++.+.+.+.. .+.|. ++|+||||+|||++|+++|+++ +.+++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 345667788999999999999988877642 12233 9999999999999999999986 345677
Q ss_pred eehhhHHHHhhhcchhHHHHHHHHHH-------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 295 ISGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 295 vs~sefve~~vg~~~~~vr~lF~~A~-------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
+++++. .+...++++++... ...+.||+|||+|.+.. ...+.|+..++. ..
T Consensus 78 ~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~ 135 (323)
T 1sxj_B 78 LNASDD------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMEL--YS 135 (323)
T ss_dssp ECTTSC------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TT
T ss_pred ecCccc------cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhc--cC
Confidence 776642 12344566665544 23478999999999842 123445554443 23
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.++.+|++||.++.+++++.+ |+. .+.+++++ +..++++.+++
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 567888899999999999998 765 67783333 77777776554
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.52 E-value=3.5e-14 Score=130.85 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=96.8
Q ss_pred CCcccccccCch---HHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 226 TGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 226 ~~~~f~dV~G~d---e~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
+..+|+++++.+ ++.+.+...+. .+ .+.+++|+||||||||++|+++|+++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---GD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---TC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 457899999733 33333333322 21 23579999999999999999999877 47899999988
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-C
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-R 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN-~ 378 (418)
+.+.+... +.. ...+++|||||+|.+... ......+..++.... ....+.+|++|| .
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~---~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVA---EQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHH---HHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHH---HcCCCeEEEEcCCC
Confidence 76543211 111 134689999999998432 112333444444332 222343555555 4
Q ss_pred CC---CcchhhhCCCccc--eEEEecCch---HHHHHHHHhhcc
Q 014798 379 AD---ILDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~---~LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~ 414 (418)
++ .+++++.+ ||+ ..+.+ +.| ++.++++.+++.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l-~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQL-QPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEEC-CCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEe-CCCCHHHHHHHHHHHHHH
Confidence 43 45688888 775 88888 555 899999887754
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=8.4e-14 Score=137.07 Aligned_cols=166 Identities=19% Similarity=0.298 Sum_probs=113.0
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc------CCCeeeeehhhH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEF 300 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el------~~pfi~vs~sef 300 (418)
...+++++|.++..+.+.+.+..... ...+..++|+||||||||+|++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45668999999998888776553211 1234579999999999999999999988 889999998753
Q ss_pred H------HHhh----------hcchhH-HHHHHHHHHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc
Q 014798 301 V------EMFV----------GVGASR-VRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (418)
Q Consensus 301 v------e~~v----------g~~~~~-vr~lF~~A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (418)
. ..+. +..... ...+++..... .|+||+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 2 1111 111222 33344444333 389999999999864321 125667777776
Q ss_pred CCCCCCCeEEEEEeCCC---CCcchhhhCCCccc-eEEEecCch--HHHHHHHHhhc
Q 014798 363 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 363 g~~~~~~ViVIatTN~~---~~LD~ALlRpGRFd-r~I~v~~lP--~R~~IL~~~l~ 413 (418)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.++++. +..+|++.++.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 54 34578899999977 467888887 665 588884444 78888887654
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=2e-13 Score=134.90 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=110.6
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee--eee---
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SIS--- 296 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi--~vs--- 296 (418)
.++..+.+|++++|.++.++.+.+.+..- +.+..++|+||||||||++|+++|++++.... ...
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 45566778999999999999888877532 22346899999999999999999998754211 011
Q ss_pred ---hhhHHH----Hhh------hcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 297 ---GSEFVE----MFV------GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 297 ---~sefve----~~v------g~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
|..+.. .+. ..+...++++++.+.. ..+.||+|||+|.+.. ...+.|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~ 141 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLK 141 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHH
T ss_pred cHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHH
Confidence 111100 000 1223457777777653 3468999999999842 34566777
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.++.. ..++++|++|+.++.+.+++++ |+ ..+.+++++ +..++++.+++
T Consensus 142 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 142 TLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp HHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHH
Confidence 77643 4568899999999999999998 76 567773333 77777776654
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3e-13 Score=133.22 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=104.6
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC---------
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 290 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~--------- 290 (418)
.|.+++.+.+|++++|++++.+.+.+.+. . ..+.|. ++|+||+|||||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 57888889999999999998887766541 1 122344 999999999999999999996521
Q ss_pred --------------------CeeeeehhhHHHHhhhcchhHHHHHHHHHH--------------hCCCeEEEEcCCcccc
Q 014798 291 --------------------PFFSISGSEFVEMFVGVGASRVRDLFKKAK--------------ENAPCIVFVDEIDAVG 336 (418)
Q Consensus 291 --------------------pfi~vs~sefve~~vg~~~~~vr~lF~~A~--------------~~aP~IIfIDEIDal~ 336 (418)
+++.+++++.. ......+++.++.+. ...|.|++|||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12222222210 000113555555542 2357799999999963
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
.. ..+.|+..++.. ..+..+|.+||.++.+.+++++ |+ ..+.+ +.| +..++++..++
T Consensus 148 -----------~~---~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~-~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 148 -----------KD---AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRC-PAPSDSEISTILSDVVT 207 (354)
T ss_dssp -----------HH---HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEEC-CCCCHHHHHHHHHHHHH
T ss_pred -----------HH---HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEec-CCcCHHHHHHHHHHHHH
Confidence 22 334455555433 2457899999999999999998 87 67888 555 77777776553
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.45 E-value=2.9e-13 Score=132.87 Aligned_cols=145 Identities=25% Similarity=0.356 Sum_probs=95.1
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH----
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~---- 303 (418)
++++|.+...+++.+.+...... +.++||+||||||||++|++++... +.||+.++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~----------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS----------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST----------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCC----------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46889999999998888876432 3479999999999999999999865 689999999875432
Q ss_pred -hhhcc------h-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------C
Q 014798 304 -FVGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------G 366 (418)
Q Consensus 304 -~vg~~------~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~ 366 (418)
+.|.. + ......|+.+. .++|||||||.+.. .....|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccc
Confidence 22211 0 11234565553 36999999999853 23344555554322 1
Q ss_pred CCCeEEEEEeCCC-------CCcchhhhCCCccc-eEEEecCchHH
Q 014798 367 NTGIIVIAATNRA-------DILDSALLRPGRFD-RQVKHVSLSLM 404 (418)
Q Consensus 367 ~~~ViVIatTN~~-------~~LD~ALlRpGRFd-r~I~v~~lP~R 404 (418)
..++.+|+|||+. ..+++.|.. ||. ..+.+|++-+|
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR 178 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQR 178 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGG
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHh
Confidence 2458999999975 234555555 664 33555333354
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.45 E-value=1.5e-12 Score=129.11 Aligned_cols=159 Identities=25% Similarity=0.368 Sum_probs=109.0
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
+.....+|++++|.+.+++.+...+..-+.+ ...+..++|+||||||||+||+++|++++.++...+++.+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3344568999999998888877766543211 123457999999999999999999999999988877754321
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC----------------
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------------- 366 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~---------------- 366 (418)
...+..++.. ...++|+||||++.+.+. .+..+ +..++.+..
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELL---YSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHH---HHHHHTSCCCC--------------
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHH---HHHHHhcccceeeccCccccccccc
Confidence 1223333332 234679999999998531 22233 222322210
Q ss_pred CCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 367 NTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 367 ~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
-..+.++++|+++..|++.+++ ||...+.+ +.+ +..+|++...+
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~L-d~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILEL-DFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEEC-CCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeC-CCCCHHHHHHHHHHHHH
Confidence 1246788899999999999999 99888888 766 77777776553
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=5.4e-13 Score=132.06 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=110.7
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCC--CceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF 300 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~--gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sef 300 (418)
...+++++|.++..+++.+.+...... ..+. .++|+||||||||++++++++++ +.++++++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 345589999999999998887763221 1123 69999999999999999999988 678889987643
Q ss_pred H------HHhh----------hcchhHHHHH-HHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc
Q 014798 301 V------EMFV----------GVGASRVRDL-FKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (418)
Q Consensus 301 v------e~~v----------g~~~~~vr~l-F~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (418)
. .... +.....+.+. ..... ...|.||+|||+|.+. ...+..|+..++
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQ 150 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHH
Confidence 2 1111 1111122222 22222 2458999999999982 245666666665
Q ss_pred CCCC--CCCeEEEEEeCCC---CCcchhhhCCCccce-EEEecCch--HHHHHHHHhhc
Q 014798 363 GFEG--NTGIIVIAATNRA---DILDSALLRPGRFDR-QVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 363 g~~~--~~~ViVIatTN~~---~~LD~ALlRpGRFdr-~I~v~~lP--~R~~IL~~~l~ 413 (418)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++ +..++++..+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 4432 1478999999987 678888887 8875 78884444 67778776654
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.43 E-value=1.5e-13 Score=152.24 Aligned_cols=165 Identities=22% Similarity=0.321 Sum_probs=110.6
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH---
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~--- 303 (418)
+++|+|++++++.+.+.+......... ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999999888764321100 00112369999999999999999999988 789999999987543
Q ss_pred --hhhc-----chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC---------C
Q 014798 304 --FVGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------N 367 (418)
Q Consensus 304 --~vg~-----~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~---------~ 367 (418)
+.|. +......+....+...++||||||||.+. ..+++.|+..|+...- -
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCEecc
Confidence 1111 11112334444455667999999999873 3466777777764321 1
Q ss_pred CCeEEEEEeCCC--------------------------CCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 368 TGIIVIAATNRA--------------------------DILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 368 ~~ViVIatTN~~--------------------------~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.++++|+|||.. ..+.|+|+. |||..+.++++. +...|++.+++
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999972 234566666 998888773332 77778776664
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.1e-12 Score=129.69 Aligned_cols=157 Identities=24% Similarity=0.289 Sum_probs=107.2
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-----Cee
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFF 293 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-----pfi 293 (418)
..|.++..+.+|++++|++++++.+...+.. .+.| +++|+||||||||++|+++|+++.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 4577788889999999999998888776652 1233 3999999999999999999998632 244
Q ss_pred eeehhhHHHHhhhcchhHHHHHHHHHHh------CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 294 ~vs~sefve~~vg~~~~~vr~lF~~A~~------~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
.+++++. .+...+++.+....+ ..+.|++|||+|.+.. ...+.|+..++.. .
T Consensus 81 ~~~~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~ 138 (340)
T 1sxj_C 81 ELNASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERY--T 138 (340)
T ss_dssp EECTTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHT--T
T ss_pred EEcCccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcC--C
Confidence 5555431 123344544443321 2368999999999842 2344555555533 3
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
..+.+|++||.++.+.+++++ |+. .+.+.+++ +..++++..+
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 456788889999999999999 876 56674555 5555555444
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.37 E-value=5e-13 Score=140.21 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=91.7
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhh-HHHHhhhc
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVEMFVGV 307 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~se-fve~~vg~ 307 (418)
..++|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+.+.. -.+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3578888888766544321 13799999999999999999999884 3555554431 11222331
Q ss_pred --chh-HHHHHHHHHHhC---CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEE
Q 014798 308 --GAS-RVRDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (418)
Q Consensus 308 --~~~-~vr~lF~~A~~~---aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~~~~ViVI 373 (418)
... .-...|..+... .++|+|||||+.+. ..+.+.|+..|+... ..+..++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 111 012223322222 46799999998763 235566777665321 11123567
Q ss_pred EEeCCCCC---cchhhhCCCccceEEEecCch----HHHHHHHHhh
Q 014798 374 AATNRADI---LDSALLRPGRFDRQVKHVSLS----LMLWFLKTHS 412 (418)
Q Consensus 374 atTN~~~~---LD~ALlRpGRFdr~I~v~~lP----~R~~IL~~~l 412 (418)
+|||+... ..+++++ ||+..+.+ ++| +|.+|++.+.
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v-~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWL-DKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEEC-CSCCCHHHHHHHHTCCC
T ss_pred hccccCCCccccHHHHHH--HHHHHHHH-HHhhhhhhHHHHHhccc
Confidence 88885332 4469999 99999999 888 4567777654
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=4.3e-12 Score=113.80 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCcccccccCchH-HHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhh
Q 014798 225 NTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 299 (418)
Q Consensus 225 ~~~~~f~dV~G~de-~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~se 299 (418)
..+.+|+++.+.+. .++.+..+.+++.+-. ...+.+++|+||||||||+|++++++++ +..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45678999887433 3333333333333322 1224579999999999999999999876 77888899988
Q ss_pred HHHHhhhcchh-HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 300 fve~~vg~~~~-~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
+.+.+...... ....+++.. ..|.+|+|||++..+ .+......+.+++.... ..+..+|.|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 87654322110 111222222 257899999998652 24445566677776643 134578888886
Q ss_pred CC
Q 014798 379 AD 380 (418)
Q Consensus 379 ~~ 380 (418)
+.
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.5e-13 Score=147.08 Aligned_cols=126 Identities=22% Similarity=0.182 Sum_probs=80.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee----ehhhHHHH-----hhhcchhHHHHHHHHHHhCCCeEEEEcCCccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEM-----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 335 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v----s~sefve~-----~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal 335 (418)
.++||+||||||||+||+++|..++..++.. ++.++... +.|... .....+..| ..+|+||||||.+
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l 403 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM 403 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS-EEECHHHHH---SSSEECCTTTTCC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccc-ccCCeeEec---CCCcEEeehhhhC
Confidence 4799999999999999999999987665542 22222111 111100 001123333 2369999999998
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCC-------------CcchhhhCCCc
Q 014798 336 GRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD-------------ILDSALLRPGR 391 (418)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-----------~~~~ViVIatTN~~~-------------~LD~ALlRpGR 391 (418)
.+ + ..+.|+..|+... .+.++.||+|||+.+ .|+++|++ |
T Consensus 404 ~~-----------~---~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--R 467 (595)
T 3f9v_A 404 RD-----------E---DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--R 467 (595)
T ss_dssp CS-----------H---HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--G
T ss_pred CH-----------h---HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--h
Confidence 43 2 3344555554321 134688999999886 89999999 9
Q ss_pred cceEEEecCch--HHHHHHHH
Q 014798 392 FDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 392 Fdr~I~v~~lP--~R~~IL~~ 410 (418)
||..+.+.++| ++.+|.+.
T Consensus 468 FDl~~~~~~~~~~e~~~i~~~ 488 (595)
T 3f9v_A 468 FDLIFILKDQPGEQDRELANY 488 (595)
T ss_dssp CSCCEEECCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 99766665888 54444443
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=8.3e-11 Score=116.46 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCCe------------------------eeeehhhHHHHhhhcchhHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPF------------------------FSISGSEFVEMFVGVGASRVRDLFKK 318 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~pf------------------------i~vs~sefve~~vg~~~~~vr~lF~~ 318 (418)
.|..+||+||||+|||++|+++|+++.... +.+++.+ .-...+...+|++++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHHH
Confidence 455799999999999999999999875432 2222110 0001234567888877
Q ss_pred HHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccce
Q 014798 319 AKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 394 (418)
Q Consensus 319 A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr 394 (418)
+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+++++ |+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~- 160 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR- 160 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred HhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-
Confidence 653 346899999999984 2356788888874 34568899999999999999999 774
Q ss_pred EEEecCch---HHHHHHHHh
Q 014798 395 QVKHVSLS---LMLWFLKTH 411 (418)
Q Consensus 395 ~I~v~~lP---~R~~IL~~~ 411 (418)
.+.+ +.| +..++++..
T Consensus 161 ~~~~-~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 161 LHYL-APPPEQYAVTWLSRE 179 (334)
T ss_dssp EEEC-CCCCHHHHHHHHHHH
T ss_pred eeeC-CCCCHHHHHHHHHHh
Confidence 5778 555 555555443
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.7e-11 Score=117.00 Aligned_cols=138 Identities=13% Similarity=0.152 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc------CCCeeeeehhhHHHHhhhcc
Q 014798 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEFVEMFVGVG 308 (418)
Q Consensus 235 G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el------~~pfi~vs~sefve~~vg~~ 308 (418)
|++++.+.+...++.-+ +..+||+||||+|||++|+++|..+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 45666666666554222 1269999999999999999999863 34566666542 0234
Q ss_pred hhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 309 ASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 309 ~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
...+|++++.+... ...|++|||+|.+. ....|.|+..|+. +.+.+++|.+||.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 55688888888643 24699999999994 2346778888874 3456788888888999999
Q ss_pred hhhCCCccceEEEecCch--HHHHHHHH
Q 014798 385 ALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
++++ | .+.+.+++ +-.+.++.
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHH
Confidence 9999 6 66673333 44454443
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.20 E-value=4e-11 Score=109.06 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCcccccccCchHHHH-HHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 014798 226 TGVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~-eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv 301 (418)
...+|+++.+.+...+ .+..+..++..... ...|.+++|+||||||||+||++++.++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998764333 33333333332210 0123689999999999999999999877 7889999999887
Q ss_pred HHhhhc-chhHHHHHHHHHHhCCCeEEEEcCCcccc
Q 014798 302 EMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 302 e~~vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
+.+... .......++..... +.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 654331 11122334444333 3599999997753
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.19 E-value=5.6e-11 Score=144.13 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=92.2
Q ss_pred CCceEECCCCChHHHHHHHH-HHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHH---------------hCCCeEEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK---------------ENAPCIVF 328 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAI-A~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~---------------~~aP~IIf 328 (418)
+++||+||||||||++|+.+ +...+.+++.++++... ++..+...++... .+.++|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 48999999999999999554 55557788888876543 2233444444321 12357999
Q ss_pred EcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC--------CCeEEEEEeCCCC-----CcchhhhCCCccceE
Q 014798 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRAD-----ILDSALLRPGRFDRQ 395 (418)
Q Consensus 329 IDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~--------~~ViVIatTN~~~-----~LD~ALlRpGRFdr~ 395 (418)
|||+|.-...+. +.......+.|+++ ..++... .++.+|||+|++. .|+++++| || ..
T Consensus 1342 iDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1342 CDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred eccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 999997544331 23334556666663 3333221 2589999999995 89999999 99 77
Q ss_pred EEecCch---HHHHHHHHhhc
Q 014798 396 VKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 396 I~v~~lP---~R~~IL~~~l~ 413 (418)
+.+ +.| ++..|++.+++
T Consensus 1413 i~i-~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1413 LYL-GYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEC-CCCTTTHHHHHHHHHHH
T ss_pred EEe-CCCCHHHHHHHHHHHHH
Confidence 889 888 89999988875
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.18 E-value=1.4e-10 Score=115.74 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=103.6
Q ss_pred cccccccCchHHHHHHHHHH-HHhcCchhhhhcCCccCCCceE--ECCCCChHHHHHHHHHHhc---------CCCeeee
Q 014798 228 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSI 295 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v-~~l~~p~~~~~lG~~~p~gVLL--~GPPGTGKT~LArAIA~el---------~~pfi~v 295 (418)
...++++|.++..+++.+.+ ....... ...+..++| +||||+|||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 44578999999999998887 6543220 012346899 9999999999999998876 5577888
Q ss_pred ehhh------HHHHhh---hc-------chhH-HHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 296 SGSE------FVEMFV---GV-------GASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 296 s~se------fve~~v---g~-------~~~~-vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
+|.. +...+. +. .... ...+.+... ...|.+|+|||+|.+...+. .+ ...+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~---~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IA---AEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SC---HHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cc---hHHHHHH
Confidence 8743 222211 11 1111 222222222 35689999999999854211 01 2345555
Q ss_pred HHHhcCCCC-C--CCeEEEEEeCCCC---Ccc---hhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 358 LTEMDGFEG-N--TGIIVIAATNRAD---ILD---SALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 358 L~emdg~~~-~--~~ViVIatTN~~~---~LD---~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
+..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++ +..++++.++
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHH
Confidence 544443321 2 5688898888665 344 56666 565558785554 7777876554
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.03 E-value=5.9e-10 Score=119.04 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=43.0
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
...++.+|++++|.+.+++.+...+. .. ..++|+||||||||+||+++|+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---~g-----------~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---QK-----------RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---TT-----------CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhcccccc---CC-----------CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567889999999998877666554 22 2799999999999999999999874
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=4.2e-10 Score=110.72 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=62.6
Q ss_pred CcccccccCchHHHH-HHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhHH
Q 014798 227 GVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (418)
Q Consensus 227 ~~~f~dV~G~de~k~-eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sefv 301 (418)
+.+|+++.+.+.... .+..+.+++.... ...+.+++|+||||||||+||+++|.++ +.++.++++++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999887553222 2223333433211 0124589999999999999999998755 5889999999988
Q ss_pred HHhhhcc-hhHHHHHHHHHHhCCCeEEEEcCCccc
Q 014798 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (418)
Q Consensus 302 e~~vg~~-~~~vr~lF~~A~~~aP~IIfIDEIDal 335 (418)
+.+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7654321 111222233222 2469999999765
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=6e-10 Score=98.32 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGT 341 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~ 341 (418)
..++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+++|||++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~---- 97 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN---- 97 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh----
Confidence 369999999999999999999987 777888888776432 1123578999999988632
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-CCCCcc--hhhhCCCccceEEEe
Q 014798 342 GIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILD--SALLRPGRFDRQVKH 398 (418)
Q Consensus 342 ~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN-~~~~LD--~ALlRpGRFdr~I~v 398 (418)
..++.+.+++..+.. ....++|.||| .|+.+. +.|.+ |+.....+
T Consensus 98 -------~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 -------EEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -------HHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -------HHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 124556666665431 12223555666 455443 77777 77554444
No 90
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.96 E-value=1.5e-10 Score=115.25 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeeh--hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~--sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~ 342 (418)
..++|+||||||||+||.++|.+.+.+..+++. .+.++.+.......++.+++...... +|+|||++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 447999999999999999999876655455554 33222222223334444555555444 99999999986543221
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhh
Q 014798 343 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (418)
Q Consensus 343 ~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~AL 386 (418)
... ....+.+.+++.+++++....++.+|+++| +...|+++
T Consensus 202 s~~--G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTS--GGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccc--chHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 000 111345666777766555455688899998 55566654
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.88 E-value=7.8e-09 Score=104.63 Aligned_cols=126 Identities=23% Similarity=0.332 Sum_probs=85.0
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH---
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~--- 303 (418)
++++.|.+...+++.+.+..+.... ..|+|+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4567888888888888887765544 369999999999999999998765 479999999876432
Q ss_pred --hhhcc------h-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh-----cCCC-CCC
Q 014798 304 --FVGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DGFE-GNT 368 (418)
Q Consensus 304 --~vg~~------~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em-----dg~~-~~~ 368 (418)
..|.. + .....+|+.|.. .++|||||+.+. .+.+..+.++|++- .+.. ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 22221 1 112345666644 499999999984 23344555555541 1111 113
Q ss_pred CeEEEEEeCCC
Q 014798 369 GIIVIAATNRA 379 (418)
Q Consensus 369 ~ViVIatTN~~ 379 (418)
++.+|+|||+.
T Consensus 272 ~~rii~at~~~ 282 (387)
T 1ny5_A 272 NVRILAATNRN 282 (387)
T ss_dssp CCEEEEEESSC
T ss_pred cEEEEEeCCCC
Confidence 58899999963
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.73 E-value=1.1e-08 Score=94.74 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=78.7
Q ss_pred CceEECCCCChHHHHHHHHHHh--------cC-CCeeeeehhhHHHHhh----------hcchh--HHHHHHHHH--HhC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE--------AG-VPFFSISGSEFVEMFV----------GVGAS--RVRDLFKKA--KEN 322 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e--------l~-~pfi~vs~sefve~~v----------g~~~~--~vr~lF~~A--~~~ 322 (418)
-.+++|+||||||++|.+.+.+ .| .+++..++.++..... ..... ...++++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4789999999999999886433 34 6777676665532111 11000 112233321 234
Q ss_pred CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 323 aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
..+||+|||++.+.+.+.... +. ..++..+.. ....++-+|.+|+.++.||.++++ |++..+.+ ..|
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~-----e~----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l-~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS-----KI----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI-ASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC-----CC----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE-EEC
T ss_pred CceEEEEEChhhhccCccccc-----hh----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE-cCc
Confidence 468999999999976553211 10 124555542 334567889999999999999988 99999988 444
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.73 E-value=2.2e-07 Score=90.08 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=94.2
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH-----
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF----- 300 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef----- 300 (418)
+....+.++|.++..+.+.+ +. . ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 34456778898877776665 32 2 269999999999999999999998777888877642
Q ss_pred ------HHHhhh---------------------c--------------chhHHHHHHHHHHhC--CCeEEEEcCCccccc
Q 014798 301 ------VEMFVG---------------------V--------------GASRVRDLFKKAKEN--APCIVFVDEIDAVGR 337 (418)
Q Consensus 301 ------ve~~vg---------------------~--------------~~~~vr~lF~~A~~~--aP~IIfIDEIDal~~ 337 (418)
...+.. . ....+.++++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 111100 0 012345555555442 389999999999864
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchh-----hh--CCCccceEEEecCch--HHHHHH
Q 014798 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA-----LL--RPGRFDRQVKHVSLS--LMLWFL 408 (418)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~A-----Ll--RpGRFdr~I~v~~lP--~R~~IL 408 (418)
.. ..+....+..+.... .++.+|++++....+... .. -.||+...+.+.+++ +-.+++
T Consensus 152 ~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 21 111123344443321 256677777643222211 00 124666778885555 666677
Q ss_pred HHhh
Q 014798 409 KTHS 412 (418)
Q Consensus 409 ~~~l 412 (418)
+..+
T Consensus 219 ~~~~ 222 (357)
T 2fna_A 219 RRGF 222 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 94
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=7.4e-09 Score=104.98 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH-HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCccccc-
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR- 337 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv-e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~- 337 (418)
+.+.+..++|+||||+|||+|++++++..+..++.+...+-. ..+ +..+ -...++++||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~-------lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFE-------LGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHH-------HGGG------TTCSCEEETTCCCSTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHH-------HHHh------cchhHHHHHHHHHHHHH
Confidence 566667799999999999999999999887766654432210 001 1111 2335789999999875
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.+... .+. . ......+...+|| .+.|+++||+++.+ +++++|||++..+..
T Consensus 232 ~r~l~--~~~-~-~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 232 SRDLP--SGQ-G-INNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TTTCC--CCS-H-HHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred Hhhcc--ccC-c-chHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 22211 111 1 1133455556665 35688899999999 799999999987766
No 95
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.71 E-value=6.6e-08 Score=97.30 Aligned_cols=124 Identities=23% Similarity=0.381 Sum_probs=81.4
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhHHH-----H
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE-----M 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sefve-----~ 303 (418)
.+++|.+....++.+.+..+.... ..++++|++||||+++|+++....+. +|+.++|+.+.+ .
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 357888888888888887765443 26999999999999999999876643 399999986532 2
Q ss_pred hhhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 014798 304 FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (418)
Q Consensus 304 ~vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~----~~~V 370 (418)
+.|... ..-...|+.|.. .+||||||+.+.. ..+..+.++|++-. .... .-++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 222211 112235666644 4999999999843 33444444554311 1111 1257
Q ss_pred EEEEEeCC
Q 014798 371 IVIAATNR 378 (418)
Q Consensus 371 iVIatTN~ 378 (418)
.+|+|||+
T Consensus 265 rii~at~~ 272 (368)
T 3dzd_A 265 RVISATNK 272 (368)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 89999995
No 96
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.70 E-value=3.3e-08 Score=117.25 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH----HHhhh------------cchhHHHHHHHHHH
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVG------------VGASRVRDLFKKAK 320 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv----e~~vg------------~~~~~vr~lF~~A~ 320 (418)
|.+.+++++|+||||||||+||.++|.++ |....+++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36667789999999999999999997765 5566666655321 11122 23345666677778
Q ss_pred hCCCeEEEEcCCccccccc---CCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 321 ENAPCIVFVDEIDAVGRQR---GTGIGGGND-EREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r---~~~~~~~~~-e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
..+|++|||||++++.+.+ +.. +..+. ..++.+.++|.+|.++....++++|++-.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~-~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccc-cccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 8899999999999988753 221 11122 24667888999988877777766666543
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=5.4e-07 Score=87.16 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=45.7
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
...-++++|.++..+++.+.+.. | ..++|+||+|+|||+|++.++++.+ ++++++...
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~ 65 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCREL 65 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecc
Confidence 34556789999988888877653 1 2699999999999999999999886 677776543
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.64 E-value=9.6e-08 Score=116.28 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=90.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~ 344 (418)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+.+.. +++++||++.+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDE------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH-------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcCh-------
Confidence 47899999999999999999999999999999997443 344566776665543 7999999999742
Q ss_pred CCChHHHHHHHHHHHH----hc---------C--CCCCCCeEEEEEeC----CCCCcchhhhCCCccceEEEecCchHHH
Q 014798 345 GGNDEREQTLNQLLTE----MD---------G--FEGNTGIIVIAATN----RADILDSALLRPGRFDRQVKHVSLSLML 405 (418)
Q Consensus 345 ~~~~e~~~~L~~LL~e----md---------g--~~~~~~ViVIatTN----~~~~LD~ALlRpGRFdr~I~v~~lP~R~ 405 (418)
+....+++.+.. +. | +..+....|++|.| ....|+++|.+ || +.+.+ ..|+..
T Consensus 712 ----evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m-~~Pd~~ 783 (2695)
T 4akg_A 712 ----KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSM-KSPQSG 783 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEEC-CCCCHH
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEe-eCCCHH
Confidence 334444333332 21 1 12245678899998 34579999998 88 67889 899666
Q ss_pred HHHHHh
Q 014798 406 WFLKTH 411 (418)
Q Consensus 406 ~IL~~~ 411 (418)
.|.++.
T Consensus 784 ~i~ei~ 789 (2695)
T 4akg_A 784 TIAEMI 789 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 99
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.50 E-value=4.8e-08 Score=101.62 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=82.3
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHH-HHhcCCCeeeeehh-----hHHHHhhh
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGS-----EFVEMFVG 306 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAI-A~el~~pfi~vs~s-----efve~~vg 306 (418)
|.|++.+|..+.-.+-. ...+ .+..-++||.|+||| ||+||+++ ++-+.... +.++. .+...+.+
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEc
Confidence 78888887655433321 1111 222337999999999 99999999 66553322 22221 11100000
Q ss_pred -cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC-------CCCCCCeEEEEEeCC
Q 014798 307 -VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-------FEGNTGIIVIAATNR 378 (418)
Q Consensus 307 -~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg-------~~~~~~ViVIatTN~ 378 (418)
.+...-...+..|.. .|+|||||+.+.+ .++..|++.|+. ..-+..+.||||+|.
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 000000112333333 4999999999842 344555555542 222456899999998
Q ss_pred CC-----------CcchhhhCCCccceEEEecCch
Q 014798 379 AD-----------ILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 379 ~~-----------~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.+ .|.+++++ |||..+.+.++|
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 65 78899999 999877665777
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.24 E-value=4e-07 Score=85.21 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
++++++||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865443
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.22 E-value=1.8e-06 Score=78.10 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=22.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCe
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPF 292 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pf 292 (418)
+.|+||+|+|||||++.+++.+++.+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 78999999999999999999886443
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=7.6e-06 Score=100.78 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=80.5
Q ss_pred CCceEECCCCChHHHHHHHHHHh-cCCCeeeeehhhHHHHhhhcchhHHHHHHHHH---------------H-hCCCeEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE-AGVPFFSISGSEFVEMFVGVGASRVRDLFKKA---------------K-ENAPCIV 327 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e-l~~pfi~vs~sefve~~vg~~~~~vr~lF~~A---------------~-~~aP~II 327 (418)
+++||+||||||||.+++..... .+.+++.++++...+ +..+...++.. . .+...|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 37999999999999877655443 366677787775332 22333333321 0 1223699
Q ss_pred EEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEEeCCCC-----CcchhhhCCCccce
Q 014798 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATNRAD-----ILDSALLRPGRFDR 394 (418)
Q Consensus 328 fIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~~~~ViVIatTN~~~-----~LD~ALlRpGRFdr 394 (418)
||||++.-.... -+.......+.++++.- ++. .-.++.+|||.|.|. .|+++++| ||-.
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE
Confidence 999998643222 12333445566666542 111 124688999999873 69999999 9964
Q ss_pred EEEecCch---HHHHHHH
Q 014798 395 QVKHVSLS---LMLWFLK 409 (418)
Q Consensus 395 ~I~v~~lP---~R~~IL~ 409 (418)
+.+ +.| +-..|+.
T Consensus 1451 -i~i-~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1451 -LLV-DFPSTSSLTQIYG 1466 (3245)
T ss_dssp -EEC-CCCCHHHHHHHHH
T ss_pred -EEe-CCCCHHHHHHHHH
Confidence 788 888 4455544
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.20 E-value=1.8e-06 Score=78.41 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
..-++|+||||+|||+|++.+|...+.+.++++..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344889999999999999999986677777777554
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.15 E-value=7.9e-06 Score=75.52 Aligned_cols=110 Identities=24% Similarity=0.250 Sum_probs=62.8
Q ss_pred CCCceEECCCCChHHHHHHHHH--Hh--cCCCeeeeehhhHHHH------hhhc--------------------------
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSISGSEFVEM------FVGV-------------------------- 307 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA--~e--l~~pfi~vs~sefve~------~vg~-------------------------- 307 (418)
..-+.|.||+|+|||+|+++++ +. .+...++++..+..+. .++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSE 109 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccc
Confidence 3458999999999999999998 43 2444554443221110 0000
Q ss_pred ----------chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 308 ----------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 308 ----------~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.......+........|.++++||..+...... ......+.+..++..+. ..++.+|.+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~vtH 180 (251)
T 2ehv_A 110 EKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILTTE 180 (251)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEEEC
T ss_pred cceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEEEC
Confidence 011122233333457899999999987754211 12344455777777764 23567888888
Q ss_pred CCCCc
Q 014798 378 RADIL 382 (418)
Q Consensus 378 ~~~~L 382 (418)
..+..
T Consensus 181 ~~~~~ 185 (251)
T 2ehv_A 181 APDPQ 185 (251)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 76554
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.15 E-value=9.6e-06 Score=73.76 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=26.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
...++|+||||+|||+|++.+|... +.++++++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3458899999999999999998654 556666553
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=3.7e-06 Score=77.57 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHh--c-------CCCeeeeehhh------HHHH--hhhc---------------chhH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGE--A-------GVPFFSISGSE------FVEM--FVGV---------------GASR 311 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~e--l-------~~pfi~vs~se------fve~--~vg~---------------~~~~ 311 (418)
..-++|+||||+|||+|++.+|.. . +...+++++.+ +.+. ..+. ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 344889999999999999999985 2 34567776544 1111 0111 0111
Q ss_pred ----HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 312 ----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 312 ----vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+..+.+......|.+|+|||+..+....-.+. +...++++.+.+++..+..+....++.||.+++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 22233344456899999999998764321100 011222222334443333222223566777776443
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.07 E-value=1.1e-05 Score=99.37 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=87.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~ 344 (418)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+.+. -+..++||++.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC--------
Confidence 45689999999999999999999999999999987432 22334455554433 3588999999973
Q ss_pred CCChHHHHHHHHHHHHh-------------c-C--CCCCCCeEEEEEeCC----CCCcchhhhCCCccceEEEecCchHH
Q 014798 345 GGNDEREQTLNQLLTEM-------------D-G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVKHVSLSLM 404 (418)
Q Consensus 345 ~~~~e~~~~L~~LL~em-------------d-g--~~~~~~ViVIatTN~----~~~LD~ALlRpGRFdr~I~v~~lP~R 404 (418)
.+...++.+.+..+ + | +.-+....+++|.|. ...|+++|.. || |-+.+ ..|+.
T Consensus 670 ---~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m-~~Pd~ 742 (3245)
T 3vkg_A 670 ---ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAM-IKPDR 742 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEEC-CSCCH
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEE-eCCCH
Confidence 23333333333211 1 2 223456888999983 4589999999 88 56888 89977
Q ss_pred HHHHHHhh
Q 014798 405 LWFLKTHS 412 (418)
Q Consensus 405 ~~IL~~~l 412 (418)
..|.++.+
T Consensus 743 ~~i~ei~L 750 (3245)
T 3vkg_A 743 EMIAQVML 750 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766643
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.00 E-value=1.8e-05 Score=81.45 Aligned_cols=106 Identities=24% Similarity=0.333 Sum_probs=60.1
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CC-Cee
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFF 293 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~-pfi 293 (418)
.+.+.++..+.+|+++- +++++.+..++.++...+ ..++|.||||||||+++.+++..+ +. .++
T Consensus 11 ~~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ----------CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCccccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 34577888889998874 566666666666665543 158999999999999999998766 33 455
Q ss_pred eeehhhH----HHHhhhcchhHHHHHHHHH----------------HhCCCeEEEEcCCccc
Q 014798 294 SISGSEF----VEMFVGVGASRVRDLFKKA----------------KENAPCIVFVDEIDAV 335 (418)
Q Consensus 294 ~vs~sef----ve~~vg~~~~~vr~lF~~A----------------~~~aP~IIfIDEIDal 335 (418)
.+..+.- +....+.....+..++... ......+|+|||+..+
T Consensus 79 ~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 79 LAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMY 140 (459)
T ss_dssp EEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGC
T ss_pred EecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhC
Confidence 4443322 1122333444444444311 0123469999999776
No 109
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=3.8e-06 Score=84.04 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH----Hhhhcch--------hHHHHHHHH----HHhCCCe
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGVGA--------SRVRDLFKK----AKENAPC 325 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve----~~vg~~~--------~~vr~lF~~----A~~~aP~ 325 (418)
.-++|+||||+|||+||..+|..+ +.+.++++...-.+ ...|... ..+.++++. ++...|+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 448999999999999999997654 56777776543211 1122110 112222222 2356799
Q ss_pred EEEEcCCccccc
Q 014798 326 IVFVDEIDAVGR 337 (418)
Q Consensus 326 IIfIDEIDal~~ 337 (418)
+|+||++..+..
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 110
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.98 E-value=7.1e-06 Score=80.69 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=66.4
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhhH--HH----Hh--hhcc---------------h
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VE----MF--VGVG---------------A 309 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~sef--ve----~~--vg~~---------------~ 309 (418)
+...-++|+||||+|||+||..+|..+ +.+.++++...- .+ .. .+.. .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 333458999999999999999998765 456777776541 11 10 1110 1
Q ss_pred h----HHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 310 S----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 310 ~----~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
. .+..+...... ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||++..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 1 12233333444 6789999999999875422211 111233445666666655443334566666644
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.97 E-value=8.9e-06 Score=81.74 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=65.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH----Hhhhc--------chhHHHHHHHHH----HhCCCe
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV--------GASRVRDLFKKA----KENAPC 325 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve----~~vg~--------~~~~vr~lF~~A----~~~aP~ 325 (418)
.-++|+||||+|||+|+..+|..+ +.++++++..+... ...|. ....+.+++..+ +...|+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 348899999999999999998764 66777777654211 11111 111223333322 346789
Q ss_pred EEEEcCCccccc-ccCCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 326 IVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 326 IIfIDEIDal~~-~r~~~~~~~~--~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+++||.+..+.+ ..-.+..+.. ....+.+.+++..+..+....++.||++..
T Consensus 142 lvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 142 LIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp EEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred eEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 999999999875 2211111111 123455666666655554445566666543
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.96 E-value=9.2e-06 Score=74.13 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|+||+|+|||+|++.+++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999854
No 113
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.95 E-value=1.5e-05 Score=80.29 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=65.7
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH----hhhc-----------chhHHHHHHHHH-Hh
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV-----------GASRVRDLFKKA-KE 321 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~----~vg~-----------~~~~vr~lF~~A-~~ 321 (418)
.+...-++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+.+.++.. +.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3334458999999999999999987654 667888876542111 1121 112222333322 34
Q ss_pred CCCeEEEEcCCcccccccC-CCCCCC-C-hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 322 NAPCIVFVDEIDAVGRQRG-TGIGGG-N-DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 322 ~aP~IIfIDEIDal~~~r~-~~~~~~-~-~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
..+++|+||.+..+..... .+..+. + ....+.+.+++..+..+....++.||++..
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6789999999999874221 110010 0 022345566666665444445566666654
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.94 E-value=1.9e-05 Score=69.61 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=34.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
.-++|+|+||+|||++++++|.+++.+++.++..++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~ 43 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc
Confidence 4589999999999999999999999999988877765543
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.88 E-value=1.6e-05 Score=94.63 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=78.3
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHh----hh--------cchhHHHHHHHHHHh----
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VG--------VGASRVRDLFKKAKE---- 321 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~----vg--------~~~~~vr~lF~~A~~---- 321 (418)
......++|+|+||+|||+||..+|..+ +.+++++++.+-.+.. .| ..+..+.++++.++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 5555669999999999999999998766 5579999887644332 22 122335555655544
Q ss_pred CCCeEEEEcCCccccc-ccCCCC-CCCC-hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 322 NAPCIVFVDEIDAVGR-QRGTGI-GGGN-DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 322 ~aP~IIfIDEIDal~~-~r~~~~-~~~~-~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
..|++|+||.++.+.+ ....+. +..+ .-..+.+++++..+..+....++.||++..
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6899999999999976 321111 1111 122345778777777766667788888775
No 116
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.88 E-value=7.6e-06 Score=79.20 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=22.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
++++|+||||||||++|+|||....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4799999999999999999999754
No 117
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=2.2e-05 Score=78.02 Aligned_cols=113 Identities=22% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhhH------HHHh--hhcc---------------hhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGVG---------------ASRV 312 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~sef------ve~~--vg~~---------------~~~v 312 (418)
.-++|+||||+|||+||..+|..+ +.+.++++...- .+.. .+.. ...+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~ 202 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQ 202 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHH
Confidence 348899999999999999998863 456777765541 1110 1110 1111
Q ss_pred HH----HHHHHHh--CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 313 RD----LFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 313 r~----lF~~A~~--~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
.+ +...... ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||++...
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 12 2233444 6789999999999875421110 1112333445666555544443445666766543
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.82 E-value=2.7e-05 Score=78.10 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=50.0
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH----HHHhhhc-----------chhHHHHHHHHH-Hh
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VEMFVGV-----------GASRVRDLFKKA-KE 321 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef----ve~~vg~-----------~~~~vr~lF~~A-~~ 321 (418)
.+...-++|+||||+|||+||..+|.++ +.++++++...- .....|. ....+.++++.. +.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3334458999999999999999997654 678888877421 1111121 112233333322 35
Q ss_pred CCCeEEEEcCCccccc
Q 014798 322 NAPCIVFVDEIDAVGR 337 (418)
Q Consensus 322 ~aP~IIfIDEIDal~~ 337 (418)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999874
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.82 E-value=2.9e-05 Score=77.40 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=62.2
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC---------CCeeeeehhhH------HHHh---------------hhc--chhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEF------VEMF---------------VGV--GASRV 312 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~vs~sef------ve~~---------------vg~--~~~~v 312 (418)
.-+.|+||||+|||+|++.+|.... ...++++..+. .... +.. .....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 3488999999999999999998762 34566665431 0000 000 01112
Q ss_pred HHHHHH----HHh-----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 313 RDLFKK----AKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 313 r~lF~~----A~~-----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.++++. ... ..|.+|+|||+-++......+. +...++++.+.+++..+..+....++.||.+++....
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~ 288 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR 288 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc
Confidence 222222 233 5799999999998864322111 1112223344555544443333345677777765443
No 120
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.79 E-value=7.9e-05 Score=68.55 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=27.2
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
...-++|+||||+|||+|+..+|... +.+.++++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 33458999999999999998886543 6677776654
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=2.7e-05 Score=79.34 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=63.1
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhhH------HH--Hhhhcc---------------
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VE--MFVGVG--------------- 308 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~sef------ve--~~vg~~--------------- 308 (418)
+....-+.|+||||+|||+|++.+|-.. +...++++..+- .. ..++..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3333448899999999999999776332 234666765431 00 001110
Q ss_pred h----hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 309 A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 309 ~----~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
. ..+..+.+......|.+|+||++-.+......+. +...++++.+.+++..+..+....++.||++++.
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~-g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR-GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 1112222333446799999999988765332211 1223444455555555544433345677777764
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.68 E-value=7.4e-05 Score=72.40 Aligned_cols=60 Identities=28% Similarity=0.373 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 237 de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
++..+.+.+++..+.... .....|.-++|.||||+||||++++++.+++..++++++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~~----~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 444555555555432221 123345668999999999999999999988656677777554
No 123
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.65 E-value=3.5e-05 Score=75.26 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---------------C----CCeeeeehhhH--HH----Hh--hhcc---------
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSISGSEF--VE----MF--VGVG--------- 308 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---------------~----~pfi~vs~sef--ve----~~--vg~~--------- 308 (418)
.-++|+||||+|||+||..+|... | .++++++..+- .+ .. .+..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~ 178 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTF 178 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEE
Confidence 448999999999999999998652 2 46677765531 11 10 1110
Q ss_pred ------hh----HHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 309 ------AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 309 ------~~----~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.. .+..+.+.... ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||++..
T Consensus 179 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 01 11123333344 5688999999999875322111 111233445666666665544444566666543
No 124
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.65 E-value=2.5e-05 Score=91.86 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=54.7
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH----Hhhhc--------chhHHHHHHHHHH----
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV--------GASRVRDLFKKAK---- 320 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve----~~vg~--------~~~~vr~lF~~A~---- 320 (418)
|......++|+||||+|||+||..+|.++ +.++.+++..+-.+ ...|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35555679999999999999999998765 56788887665332 22221 1223445555554
Q ss_pred hCCCeEEEEcCCccccc
Q 014798 321 ENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~ 337 (418)
...|++|+||++..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999874
No 125
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.64 E-value=3.3e-05 Score=68.64 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEEEEcCCccccccc----CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQR----GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r----~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+-.+..+....|.++++||-.+....+ ... .-..........++...+...... +..+|.+|+..+.+
T Consensus 91 rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~-~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 91 LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR-QVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC-CCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC-CCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 344555666789999999976543221 100 001111122334555555444322 56778888865543
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.61 E-value=0.00014 Score=68.75 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
..|..++|.||||+|||++|+.++.+++.+++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345669999999999999999999999877777887765
No 127
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.59 E-value=7.2e-05 Score=71.41 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-++|+||||+|||+|++.+|..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998643
No 128
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.55 E-value=6.4e-05 Score=74.64 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=61.3
Q ss_pred CceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhhHHH----Hhhhcc--------hhHHHHH----HHHH---Hh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE----MFVGVG--------ASRVRDL----FKKA---KE 321 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~sefve----~~vg~~--------~~~vr~l----F~~A---~~ 321 (418)
-++|+||||+|||+|+-.++.++ +..++++++.+-.. .-.|.. +....++ .+.. +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 36899999999999987765433 56778887654211 111211 1122232 2222 45
Q ss_pred CCCeEEEEcCCccccccc-CCCCCCC----ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 322 NAPCIVFVDEIDAVGRQR-GTGIGGG----NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 322 ~aP~IIfIDEIDal~~~r-~~~~~~~----~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.+|.+|+||-|.++.+.. -.+..+. +..+.+.+.+.|..+.++....++.+|.+-.
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 689999999999997532 1111111 1124455666665554443345556665543
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.55 E-value=3.5e-05 Score=68.40 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
++.++|+||||||||++++.+|.+++.+++.. .++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 34699999999999999999999999888754 444443
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.54 E-value=7.6e-05 Score=68.69 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=27.2
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHh----cCCCeeeeehh
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 298 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~vs~s 298 (418)
+...-++|+|+||+|||++|..+|.+ .+.++++++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 33344899999999999999876543 36777777644
No 131
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.51 E-value=5.6e-05 Score=75.84 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=58.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc----CCCeeeeeh-hhHH---------HHhhhcchhHHHHHHHHHHhCCCeEEEEcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG-SEFV---------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~-sefv---------e~~vg~~~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
.+++.||+|+||||+++++++.. +..++.+.- .++. ...++.......+.+..|....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 38899999999999999998865 222222210 0110 001122223456688888889999999999
Q ss_pred CcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 332 IDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
+-. ..+...++.... .+..|+++++..+.
T Consensus 205 p~d----------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 205 MRD----------------LETIRLALTAAE-----TGHLVFGTLHTTSA 233 (356)
T ss_dssp CCS----------------HHHHHHHHHHHH-----TTCEEEEEESCSSH
T ss_pred CCC----------------HHHHHHHHHHHh-----cCCEEEEEEccChH
Confidence 831 223334444332 34568888887664
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.48 E-value=4.9e-05 Score=68.88 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=37.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHh--------hh-----cchhHHHHHHHHHHhCCCeEEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF--------VG-----VGASRVRDLFKKAKENAPCIVFV 329 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~--------vg-----~~~~~vr~lF~~A~~~aP~IIfI 329 (418)
-++++||+|+|||+++..++..+ +.+.+.+.... -..+ .| .......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 37899999999999997666543 55554443221 0010 00 00111223333332 24679999
Q ss_pred cCCccc
Q 014798 330 DEIDAV 335 (418)
Q Consensus 330 DEIDal 335 (418)
||+..+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999876
No 133
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.48 E-value=0.00012 Score=70.06 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=42.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcC----CCeeeeehhhH----------H-HHhhhcchhHHHHHHHHHHhCCCeEEEEc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEF----------V-EMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~sef----------v-e~~vg~~~~~vr~lF~~A~~~aP~IIfID 330 (418)
-++|+||+|+||||+++++++... ..++ +.+.+. + ...++......+..+..+....|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 488999999999999999988642 1221 111110 0 00111122345677777777789999999
Q ss_pred CCc
Q 014798 331 EID 333 (418)
Q Consensus 331 EID 333 (418)
|..
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 134
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=5e-05 Score=68.79 Aligned_cols=31 Identities=42% Similarity=0.655 Sum_probs=27.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+.++|+||||||||++++++|+.++.+++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4699999999999999999999999888644
No 135
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.47 E-value=0.00011 Score=70.69 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc----CCCeeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSIS 296 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs 296 (418)
.-++|.||||+|||+|++.+|+.. |.++.+++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358899999999999999998764 44565554
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=5e-05 Score=67.48 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=28.3
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.|.-++|.|+||+||||+++.++.+++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 345689999999999999999999998877653
No 137
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.42 E-value=0.00012 Score=72.38 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=48.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcC--CCeeeeehhh-H-----HHH--hhhcchhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-F-----VEM--FVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~se-f-----ve~--~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
.++|.||+|+|||||++++++... .-.+.+.+.. + .+. ++..+..+.+..+..|....|.+|++||...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 699999999999999999998763 2233443321 0 000 1111456778888899889999999999744
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=6.6e-05 Score=66.78 Aligned_cols=37 Identities=35% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.-+.|.||||+||||+++++|+..+.+.+.+++.++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3588999999999999999999888888888877664
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.41 E-value=0.00019 Score=73.66 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeeh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~ 297 (418)
|.....-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34444458899999999999999997643 567777764
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=0.00028 Score=61.68 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=29.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..+.|+||+||||||+++.+|+.++.+++ ++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 46899999999999999999999986554 5555443
No 141
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=9.5e-05 Score=64.18 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
-++|.||||+||||+++.+|..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3789999999999999999999998876544
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.33 E-value=0.00023 Score=66.85 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=43.1
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh---HHHHh---hhc-----chhHHHHHHHHHHh----CCCeEEE
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE---FVEMF---VGV-----GASRVRDLFKKAKE----NAPCIVF 328 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se---fve~~---vg~-----~~~~vr~lF~~A~~----~aP~IIf 328 (418)
++++||+|+|||+++..++.++ +..++.++... ..... .|. ......++++.+.. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7788999999999998887655 56666664322 10000 111 01122456666554 3478999
Q ss_pred EcCCccc
Q 014798 329 VDEIDAV 335 (418)
Q Consensus 329 IDEIDal 335 (418)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999775
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.33 E-value=0.00011 Score=65.22 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=29.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
.++|+|+||+|||++|+.+|..++.+++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 48999999999999999999999988764 444443
No 144
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.33 E-value=0.00086 Score=64.77 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 314 ~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
-.+..|....|.++++||--+ +-+......+.+++.++.. ..+..||.+|+..+.+.
T Consensus 152 v~iAraL~~~P~lLlLDEPts----------~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTA----------GLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHHH
Confidence 344445557899999999643 3456666667777776631 12467888898776543
No 145
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=9e-05 Score=65.40 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=28.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.++|.||||||||++++++|.+++.+++. ..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHH
Confidence 58999999999999999999999987764 44444
No 146
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=9.5e-05 Score=65.46 Aligned_cols=32 Identities=38% Similarity=0.771 Sum_probs=28.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
++.++|+|+||+|||++++++|..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998777654
No 147
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.31 E-value=0.00032 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=31.8
Q ss_pred CceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~ 303 (418)
-++|+|+||+|||++|+.++.. .|.+++.++...+.+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 5899999999999999999987 7888886777666543
No 148
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.31 E-value=0.00047 Score=64.22 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999865
No 149
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.30 E-value=0.00053 Score=59.83 Aligned_cols=38 Identities=29% Similarity=0.637 Sum_probs=28.4
Q ss_pred CCCceEECCCCChHHHHHHHHHH-hcCCCeeeeehhhHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFVEM 303 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~-el~~pfi~vs~sefve~ 303 (418)
|.-++|.|+||+|||++|+.++. ..+ +..++...+.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~ 40 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQS 40 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHH
Confidence 34589999999999999999998 455 445555555444
No 150
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.28 E-value=0.002 Score=72.38 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=37.3
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 287 (418)
....+++|.++..++|.+.+..-.. .++-+.|+|+.|+|||+||+.++..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~----------~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNG----------EPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTT----------SCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCceeccHHHHHHHHHHHHhhccC----------CCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3455689999988888876642211 1235889999999999999999765
No 151
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.28 E-value=0.0033 Score=65.84 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred cCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHH
Q 014798 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 234 ~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~ 286 (418)
.|.++.++++.+.+..-... ..+.|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~---------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDL---------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTS---------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCC---------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999888877532111 124588999999999999999997
No 152
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.27 E-value=0.00098 Score=62.37 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=30.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehh-hHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVEM 303 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s-efve~ 303 (418)
.++++||+|+|||.+|.+++.+.+.+.+.+... ++++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 389999999999999999998887777776654 44433
No 153
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.26 E-value=0.00038 Score=71.29 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~s 298 (418)
|.....-++|.|+||+|||+||..+|... +.++.+++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444458899999999999999887643 5677777653
No 154
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.25 E-value=0.001 Score=69.56 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=36.0
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHH
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~ 286 (418)
....++|.++..+++.+.+..... .++-+.|+||+|+|||+||+.++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~----------~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKG----------EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTT----------SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCeecccHHHHHHHHHHHhcccC----------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 445689999888888776643111 123589999999999999999964
No 155
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.24 E-value=0.00084 Score=63.16 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999999854
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00017 Score=65.07 Aligned_cols=32 Identities=44% Similarity=0.693 Sum_probs=27.8
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|.-++|+|+||+|||++|+.+|.+++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 44589999999999999999999999886554
No 157
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.22 E-value=0.0012 Score=62.91 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|....|.++++||--+ +-+....+.+.+++.++.. .+..||.+|+..+.+
T Consensus 167 aL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIA----------GVAPGLAHDIFNHVLELKA----KGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH----TTCEEEEECSCCSTT
T ss_pred HHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHH
Confidence 3446799999999643 3466667777777777631 246788888876654
No 158
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.00016 Score=63.17 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=29.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.++|.|+||||||++++.+|.+++.+++. ..++...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 58999999999999999999999998865 3444433
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.20 E-value=0.00013 Score=65.22 Aligned_cols=35 Identities=40% Similarity=0.667 Sum_probs=28.0
Q ss_pred CCceEECCCCChHHHHHHHHHHh-cCCCeeeeehhhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE-AGVPFFSISGSEFV 301 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e-l~~pfi~vs~sefv 301 (418)
..++|+|+||||||++++.+|.. ++.+++ +..++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i--d~d~~~ 46 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL--EVGKLV 46 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE--EHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe--eHHHHH
Confidence 45999999999999999999998 676665 444443
No 160
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00022 Score=64.31 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
++-++|.|++|+||||+|+.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877664
No 161
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.18 E-value=0.00019 Score=68.00 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
-++|.||||||||++|+++|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988876654
No 162
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.16 E-value=0.0019 Score=60.92 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=25.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
.+++.|+||+|||+++-.+|.++ |..+..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 58999999999999999998765 666654444
No 163
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.16 E-value=0.0013 Score=63.11 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhC------CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKEN------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~------aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+-|-.+..|... .|.++++||--+ +-+......+.+++.++. ...+..||.+|+..+
T Consensus 147 ~QRv~iAraL~~~~~~~~~p~lLllDEPts----------~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 147 QQRVQLARVLAQLWQPQPTPRWLFLDEPTS----------ALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp HHHHHHHHHHHHTCCSSCCCEEEEECCCCS----------SCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCccc----------cCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 344455556666 899999999633 345666666777777663 123467888888654
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00014 Score=64.37 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=28.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
|.-|+|.|+||||||++|+.+|.+++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 345899999999999999999999987664 444443
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.15 E-value=0.00016 Score=62.33 Aligned_cols=29 Identities=34% Similarity=0.630 Sum_probs=25.1
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
-++|+||||+|||++|+.+ .+++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888876654
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00064 Score=68.29 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=43.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC----CCeeeeehh-hH--------HHH-hhhcchhHHHHHHHHHHhCCCeEEEEc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGS-EF--------VEM-FVGVGASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~s-ef--------ve~-~vg~~~~~vr~lF~~A~~~aP~IIfID 330 (418)
..++|+||+|+||||+++++++... ..++.+... ++ +.. .+|.....++..+..+....|.+|++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 3589999999999999999998652 223222210 00 000 011122344667777777889999999
Q ss_pred CCc
Q 014798 331 EID 333 (418)
Q Consensus 331 EID 333 (418)
|+-
T Consensus 217 E~~ 219 (372)
T 2ewv_A 217 EMR 219 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 167
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.14 E-value=0.00015 Score=64.05 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=27.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
++-++|.|+||||||++++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998665543
No 168
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.00051 Score=73.01 Aligned_cols=70 Identities=30% Similarity=0.334 Sum_probs=43.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH----HHhhhcchhHHHHHHHHHH---------hCCCeEEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv----e~~vg~~~~~vr~lF~~A~---------~~aP~IIfI 329 (418)
.++|.||||||||+++++++..+ +.++..+..+.-. ....+.....+..++.... ....++|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 58999999999999999997654 6666665443221 1122333444444442110 113579999
Q ss_pred cCCccc
Q 014798 330 DEIDAV 335 (418)
Q Consensus 330 DEIDal 335 (418)
||+..+
T Consensus 286 DEasml 291 (574)
T 3e1s_A 286 DEVSMM 291 (574)
T ss_dssp CCGGGC
T ss_pred cCccCC
Confidence 999776
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.0003 Score=62.20 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=31.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef 300 (418)
.-+.|+|++|+|||++++.+++.+ |.+++.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 358899999999999999999987 999998886654
No 170
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.12 E-value=0.0002 Score=62.42 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=28.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
.++|+|+||+|||++|+.+|..++.+++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 58999999999999999999999987654 444443
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.10 E-value=0.00091 Score=65.40 Aligned_cols=38 Identities=26% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
|.....-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 33333458999999999999999998654 456666654
No 172
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.10 E-value=0.00093 Score=67.31 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 312 vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.|-.+..|....|.++++||--+ +-+......+.++|.++. ...+..||.+|+..+
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs----------~LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATS----------ALDPATTRSILELLKDIN---RRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCc----------cCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHH
Confidence 34444555567899999999644 345566666667777663 123567888888654
No 173
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.09 E-value=0.0018 Score=65.30 Aligned_cols=22 Identities=45% Similarity=0.770 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||.+++|+-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 7799999999999999999843
No 174
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.09 E-value=0.0016 Score=61.74 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|-.+..|....|.++++||--+ +-+......+.+++.++. .+..+|.+|+..+.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~~-----~g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATS----------ALDYESEHVIMRNMHKIC-----KGRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCS----------CCCHHHHHHHHHHHHHHH-----TTSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHc-----CCCEEEEEeCCHHH
Confidence 3344445556799999999644 346666777777777763 14567778876543
No 175
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00019 Score=63.76 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=26.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.-++|.|+||||||++++.+|.+++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4589999999999999999999998776543
No 176
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.08 E-value=0.0021 Score=61.28 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 316 F~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+..|....|.++++||--+ +-+......+.+++.++.. .+..||.+|+..+
T Consensus 157 lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~----~g~tiiivtHd~~ 207 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTS----------GLDVLNAREVRKILKQASQ----EGLTILVSSHNML 207 (256)
T ss_dssp HHHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH----TTCEEEEEECCHH
T ss_pred HHHHHHcCCCEEEEeCCcc----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHH
Confidence 3334456799999999643 3466667777777777631 2456777887544
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.0002 Score=63.01 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
.-++|.|+||+|||++|+.+|.+++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999887
No 178
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.08 E-value=0.00025 Score=64.61 Aligned_cols=29 Identities=34% Similarity=0.659 Sum_probs=25.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
++|.||||+||||+|+.+|.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998776654
No 179
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.06 E-value=0.0013 Score=61.36 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
|....|.++++||--+ +-+......+.+++.++.. . +..||.+|+..
T Consensus 154 al~~~p~lllLDEPt~----------~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~ 200 (224)
T 2pcj_A 154 ALANEPILLFADEPTG----------NLDSANTKRVMDIFLKINE---G-GTSIVMVTHER 200 (224)
T ss_dssp HTTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCH
T ss_pred HHHcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEcCCH
Confidence 3446789999999643 3456666777777777631 2 45778888753
No 180
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.06 E-value=0.0024 Score=60.73 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.+..|....|.++++||--+ +-+......+.+++.++.. ..+..||.+|+..+.
T Consensus 138 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTS----------ALDLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHTTCSEEEESSSST----------TSCHHHHHHHHHHHHHHHH---TSCCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHH
Confidence 34445556799999999644 3456666677777776631 224567888886543
No 181
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.05 E-value=0.00023 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4589999999999999999999999766543
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00027 Score=64.27 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=26.0
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
++|.||||+||||+|+.+|.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998777654
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.00021 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.669 Sum_probs=26.1
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.++|.|+|||||||+++.+|.+++.+++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 489999999999999999999998766543
No 184
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.05 E-value=0.0013 Score=64.38 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=45.6
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH-------HHh---hh-------c--ch-hHHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VG-------V--GA-SRVRDLFKK 318 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv-------e~~---vg-------~--~~-~~vr~lF~~ 318 (418)
..|.-++++||+|+||||++..+|+.+ +..+..+++..+. ..| .+ . .. ....+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345568899999999999999999865 4555555443211 111 11 0 11 112345556
Q ss_pred HHhCCCeEEEEcCCc
Q 014798 319 AKENAPCIVFVDEID 333 (418)
Q Consensus 319 A~~~aP~IIfIDEID 333 (418)
+....|.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 667788999999864
No 185
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.04 E-value=0.00021 Score=63.68 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=26.6
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
+.-++|.|+||+|||++|+.+|..++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3458999999999999999999999866554
No 186
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.04 E-value=0.00022 Score=65.48 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.1
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
|..++|.||||+||||+++.+|.+++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999976554
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00029 Score=61.19 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=25.8
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
++|+|+||+|||++++.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999987764
No 188
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.02 E-value=0.0011 Score=61.65 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 189
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.02 E-value=0.0022 Score=67.00 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh----HHHH----------h--hh------------cchhHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE----FVEM----------F--VG------------VGASRVR 313 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se----fve~----------~--vg------------~~~~~vr 313 (418)
.-++|.||+|+|||+|++.+|+.. |.+.+++...+ +... + .| .+....+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 348899999999999999998754 44555554322 1111 0 00 1334566
Q ss_pred HHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 314 ~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
.++..+....|.+++||=+..+...- ...+....+.+++..+. ..++.+|.+++..
T Consensus 362 ~~~a~~l~~~p~llilDp~~~Ld~~~------~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 362 IIKSEINDFKPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHTTCCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHhhCCCEEEEcChHHHHhhC------ChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 77777778889999999555553220 11223445556666654 2345666666654
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00063 Score=61.40 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=32.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFK 317 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~ 317 (418)
.+.|.||+||||||+++.+|+ +|.+++ +..++.......+...+.++++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~~~~~~~~~~~~~~i~~ 52 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVAREVVAKDSPLLSKIVE 52 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHHHHTTCSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHHHHHccCChHHHHHHHH
Confidence 478999999999999999998 777664 5555543322223334444443
No 191
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.01 E-value=0.00022 Score=65.74 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+.-++|.|+||+|||++++.+|.+++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 44689999999999999999999998766543
No 192
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.0002 Score=63.19 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEF 300 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sef 300 (418)
-++|.||||+||||+++.+|..++ .++..++..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 588999999999999999999876 22344454443
No 193
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.01 E-value=0.00048 Score=69.79 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||+|+||+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 7799999999999999999843
No 194
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.01 E-value=0.0041 Score=59.67 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
|-.+..|....|.++++||--+ +-+......+.+++.++. ...+..||.+|+..+
T Consensus 164 Rv~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATS----------ALDAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 4445555567899999999644 345566666777776653 122456778887543
No 195
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.99 E-value=0.0023 Score=66.79 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=64.1
Q ss_pred CCceEECCCCChHHHHHHH--HHHhc--CCCeeeeehhhHHHH------hhhc--------------c------------
Q 014798 265 KGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSISGSEFVEM------FVGV--------------G------------ 308 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArA--IA~el--~~pfi~vs~sefve~------~vg~--------------~------------ 308 (418)
..++|.||+|+|||+|++. +++.. +..-+++++.+.... .+|. .
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~ 119 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVG 119 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhc
Confidence 3589999999999999999 45543 445566655431100 0000 0
Q ss_pred ----hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 309 ----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 309 ----~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
...............|.+|+|||+-++.+. .+.+....+.+..++..+.. .++.+|.+|++.+.+
T Consensus 120 ~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 120 GFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 011222333334467889999999776432 11233445566777776642 356788888877664
No 196
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00025 Score=65.10 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=27.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3589999999999999999999998776654
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.98 E-value=0.0052 Score=63.15 Aligned_cols=72 Identities=24% Similarity=0.235 Sum_probs=45.8
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH-------HH---Hhhhc----------chhHHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF-------VE---MFVGV----------GASRVRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef-------ve---~~vg~----------~~~~vr~lF~~A 319 (418)
.|.-++++||+|+||||++..+|..+ +..+..+++.-+ .. ...+. .....+..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35668999999999999999998755 556655554311 11 11111 111234555666
Q ss_pred HhCCCeEEEEcCCcc
Q 014798 320 KENAPCIVFVDEIDA 334 (418)
Q Consensus 320 ~~~aP~IIfIDEIDa 334 (418)
..+.+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 666789999998743
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.96 E-value=0.0041 Score=64.10 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=47.8
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH-------HHHh---hh----------cchhHHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF-------VEMF---VG----------VGASRVRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef-------ve~~---vg----------~~~~~vr~lF~~A 319 (418)
.|.-++++|++|+||||++..+|..+ |..+..+++..+ ...+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36679999999999999999998755 556665554422 1111 11 1123346677778
Q ss_pred HhCCCeEEEEcCCc
Q 014798 320 KENAPCIVFVDEID 333 (418)
Q Consensus 320 ~~~aP~IIfIDEID 333 (418)
+.+.+++|+||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999863
No 199
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.00038 Score=62.96 Aligned_cols=34 Identities=35% Similarity=0.712 Sum_probs=27.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
.-+.|.||+|+||||+++++++.+|..+ +++.++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 4588999999999999999999987544 455443
No 200
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.95 E-value=0.0011 Score=60.60 Aligned_cols=39 Identities=36% Similarity=0.589 Sum_probs=31.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---------------------CCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---------------------GVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---------------------~~pfi~vs~sefve~ 303 (418)
+.++|+||+|+|||+|++.+..+. |..+++++-.+|..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHH
Confidence 358999999999999999997643 456777887787655
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.94 E-value=0.00057 Score=60.21 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefv 301 (418)
-++|.|+||+||||+++.++.+++ .++..++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 378999999999999999999775 446666665554
No 202
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.93 E-value=0.0019 Score=64.79 Aligned_cols=21 Identities=48% Similarity=0.691 Sum_probs=19.6
Q ss_pred ceEECCCCChHHHHHHHHHHh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e 287 (418)
+.|.||+|||||||.+++|+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 779999999999999999984
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.93 E-value=0.00035 Score=64.83 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
..++|.|+||||||++|+.+|.+++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3589999999999999999999999766543
No 204
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.93 E-value=0.0004 Score=60.96 Aligned_cols=29 Identities=28% Similarity=0.490 Sum_probs=25.1
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
.++|+||+|+|||++++.+++.+|.+++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 48899999999999999999988765543
No 205
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.93 E-value=0.00053 Score=62.01 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=29.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef 300 (418)
.-+.|.||+|+||||+++++|+.+ |...+++++.++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 358899999999999999999988 555456776665
No 206
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00032 Score=63.08 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.-++|.|+||||||++++.+|.+++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3588999999999999999999998765543
No 207
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.92 E-value=0.0033 Score=61.46 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=72.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CC-CeeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcc-
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDA- 334 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~-pfi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDa- 334 (418)
+..+||+||+|.||+..+++++..+ +. ++..+... +...++++++.+.. ....||+|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 4479999999999999999998765 22 22222110 12345666666543 3467999999988
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC------CCcchhhhCCCccceEEEecCch--HHHH
Q 014798 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA------DILDSALLRPGRFDRQVKHVSLS--LMLW 406 (418)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~------~~LD~ALlRpGRFdr~I~v~~lP--~R~~ 406 (418)
+.. ...+.|+..++.. .+++++|.+|+.. ..+-+++.+ |. ..+.+.+++ +..+
T Consensus 89 l~~--------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 89 PNA--------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCT--------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCh--------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 632 1455677766643 3455666555543 346667776 44 356662333 4454
Q ss_pred HHHHhh
Q 014798 407 FLKTHS 412 (418)
Q Consensus 407 IL~~~l 412 (418)
.++..+
T Consensus 150 ~l~~~~ 155 (343)
T 1jr3_D 150 WVAARA 155 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 208
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.91 E-value=0.00077 Score=67.58 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||.++||+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7799999999999999999843
No 209
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.91 E-value=0.0018 Score=60.85 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
|-.+..|....|.++++||--+ +-+......+.+++.++.. ..+..||.+|+..+
T Consensus 153 Rv~iAral~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTW----------ALDSKTGEKIMQLLKKLNE---EDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHHH---HHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH---HcCCEEEEEcCCHH
Confidence 3444555557799999999644 3455666666667766531 12467888888654
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.001 Score=59.72 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=32.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFK 317 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~ 317 (418)
-+.|+|++||||||+++.+|+ +|++++ +..++.......+...+..+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i--~~d~~~~~~~~~~~~~~~~i~~ 51 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL--DADKLIHSFYRKGHPVYEEVVK 51 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE--EHHHHHHGGGSSSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE--EccHHHHHHhcCCHHHHHHHHH
Confidence 378999999999999999999 776554 4455544333222233444443
No 211
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.0004 Score=64.98 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=29.4
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.|+-++|.||||+||+|.|+.+|.+++.+. ++..++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 345688999999999999999999998655 4444443
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.90 E-value=0.0026 Score=58.65 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=60.2
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeee---eh------hhHHHHhh-----------------hcchhHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSI---SG------SEFVEMFV-----------------GVGASRVRDLF 316 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~v---s~------sefve~~v-----------------g~~~~~vr~lF 316 (418)
.+++++++|.|||++|-++|-++ |..+..+ .+ .++.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999997655 7777666 32 12444431 00123445555
Q ss_pred HHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 317 ~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+.+++ ...++|++||+-....-.-- ...+++..+.. .....-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-----------~~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-----------PLEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-----------CHHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-----------CHHHHHHHHHh--CcCCCEEEEECCCC
Confidence 55544 45789999999654322110 12234444432 23456788898864
No 213
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.89 E-value=0.00035 Score=65.67 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=27.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|.-++|.||||+||||+|+.++.+++.+++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 44699999999999999999999998666543
No 214
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.0019 Score=60.70 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
..|....|.++++||-.+ +-+......+.+++.++.. .+..+|.+|+..+
T Consensus 151 AraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSL----------GLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp HHHHTTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred HHHHHcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 334446799999999644 3466666777777777642 2446777787653
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.88 E-value=0.0075 Score=64.07 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=44.0
Q ss_pred eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CcchhhhCCCccceEEEecCch
Q 014798 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 325 ~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~--~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.+|+|||+..+.... ..+.+..+.++..+ ...-+|.+|++|.+|. .++..++. -|...|.+ .+.
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~l-rv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAF-QVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEE-CCS
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEE-EcC
Confidence 589999999886432 12344455555544 3356899999999987 78887776 56666766 555
No 216
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.00025 Score=71.26 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 235 G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
..+.+.+.+.+.+...-.+.. ...++|+||||+|||++++++|+.++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345566666666654222211 1258999999999999999999999988855
No 217
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.84 E-value=0.0031 Score=60.42 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 318 ~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.|....|.++++||--+ +-+......+.+++.++.. .+..||.+|+..+
T Consensus 172 raL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~~----~g~tvi~vtHd~~ 220 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTS----------ALDPEMVGEVLSVMKQLAN----EGMTMVVVTHEMG 220 (263)
T ss_dssp HHHTTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHH
Confidence 34446799999999643 3466666777777777631 2467888888644
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.83 E-value=0.00054 Score=62.47 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=27.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
.+.|.||+||||||+++.+++.++.+++ +..++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i 39 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAI 39 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc--cCcce
Confidence 4889999999999999999999987665 44444
No 219
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.82 E-value=0.0032 Score=63.19 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=22.5
Q ss_pred CCccCCC--ceEECCCCChHHHHHHHHHHh
Q 014798 260 GARIPKG--VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 260 G~~~p~g--VLL~GPPGTGKT~LArAIA~e 287 (418)
....+.| +.|.||+|||||||+++||+-
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 3334444 789999999999999999984
No 220
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.0008 Score=59.41 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=27.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs 296 (418)
+.|.|+||+||||+++.++.++ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88888764
No 221
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.79 E-value=0.00052 Score=62.62 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
++|.|+||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998776554
No 222
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.77 E-value=0.0014 Score=62.70 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
..|....|.++++||-.+ +-+......+.+++.++.. . +..||.+|+..+.+
T Consensus 150 AraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLV----------GLDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHTTCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred HHHHHcCCCEEEEcCccc----------cCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 334446799999999644 3456666677777776631 2 45788888877654
No 223
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.76 E-value=0.0018 Score=64.65 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||++++|+-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 7799999999999999999843
No 224
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.76 E-value=0.0023 Score=62.74 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+.|-.+..|.-..|.|+++||.-+ +-+...+..+.+++..+.. +..+|..|++.+
T Consensus 196 rQRvaiARAL~~~p~iLlLDEPts----------~LD~~~~~~i~~~l~~l~~-----~~Tvi~itH~l~ 250 (306)
T 3nh6_A 196 KQRVAIARTILKAPGIILLDEATS----------ALDTSNERAIQASLAKVCA-----NRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSS----------CCCHHHHHHHHHHHHHHHT-----TSEEEEECCSHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHcC-----CCEEEEEEcChH
Confidence 444455666667899999999644 3456666667777766532 235666787654
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.00064 Score=60.54 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=25.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+.|.|++||||||+++.+|+.++.+++..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 78999999999999999999999876643
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.73 E-value=0.0013 Score=59.48 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
++-++|+||||+|||++++.++..+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45689999999999999999998874
No 227
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.73 E-value=0.0046 Score=64.86 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=43.1
Q ss_pred CCe-EEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CcchhhhCCCccceEEEec
Q 014798 323 APC-IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVKHV 399 (418)
Q Consensus 323 aP~-IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~--~LD~ALlRpGRFdr~I~v~ 399 (418)
.|. +|+|||...+.... ..+.+..+..+... ...-++.+|.+|.++. .++..++. -|..+|.+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l- 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF- 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE-
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEE-
Confidence 354 89999998775321 11223333333333 2234789999999987 57777765 56666666
Q ss_pred Cch---HHHHHH
Q 014798 400 SLS---LMLWFL 408 (418)
Q Consensus 400 ~lP---~R~~IL 408 (418)
.+. +...|+
T Consensus 362 rv~s~~dsr~il 373 (512)
T 2ius_A 362 TVSSKIDSRTIL 373 (512)
T ss_dssp CCSSHHHHHHHH
T ss_pred EcCCHHHHHHhc
Confidence 554 444444
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.0022 Score=62.36 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=41.3
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhH-------HHHh---hh------cchhHHHHHHHHHHhCC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF-------VEMF---VG------VGASRVRDLFKKAKENA 323 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sef-------ve~~---vg------~~~~~vr~lF~~A~~~a 323 (418)
+..++|+||+|+||||++..+|..+ |..+..+++..+ ...+ .+ .....++..+..+ ..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~~ 182 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--SE 182 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--cC
Confidence 4568899999999999999998754 545655554321 1111 11 1123344444443 56
Q ss_pred CeEEEEcC
Q 014798 324 PCIVFVDE 331 (418)
Q Consensus 324 P~IIfIDE 331 (418)
+.+|+||-
T Consensus 183 ~dlvIiDT 190 (296)
T 2px0_A 183 YDHVFVDT 190 (296)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 78999993
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.73 E-value=0.0018 Score=67.06 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~s 298 (418)
|.....-++|.|+||+|||+||..+|..+ +.++.+++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34334458899999999999999987654 5677777654
No 230
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.70 E-value=0.00076 Score=62.34 Aligned_cols=33 Identities=39% Similarity=0.710 Sum_probs=27.1
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
++|.||||+||+|.|+.+|.+++.+. ++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 68899999999999999999998765 4444443
No 231
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.69 E-value=0.0016 Score=75.51 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
.++.|-.++.|.-..|.|+++||.-+-. +.+.++.+.+.+..+- .+..+|..|++...+.
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaL----------D~~te~~i~~~l~~~~-----~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSAL----------DAESEGIVQQALDKAA-----KGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTS----------CTTTHHHHHHHHHHHH-----TTSEEEEECSCTTTTT
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccC----------CHHHHHHHHHHHHHHh-----CCCEEEEEcccHHHHH
Confidence 3455666666777789999999975543 2333455555555442 1335677788877553
No 232
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.66 E-value=0.0021 Score=58.69 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=30.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg 306 (418)
-+.|+|++||||||+++.++..+|.+++ ++.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHH
Confidence 3789999999999999999998887664 55666554443
No 233
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.66 E-value=0.0007 Score=67.11 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=29.3
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
++.++|+||+|||||++++++|++++.+++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3468999999999999999999999887777643
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.00083 Score=60.07 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-CCCeeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSIS 296 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs 296 (418)
.-+.|.|++|+||||+++.++.++ +.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 458899999999999999999998 57776554
No 235
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0011 Score=59.44 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=28.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.+.|.|++|+|||++++.+|+.++.+++. ..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d--~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec--cchHH
Confidence 47899999999999999999999977764 44443
No 236
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.64 E-value=0.0011 Score=61.97 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=26.6
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
|.-+.|.||+|+||||+++++|.+++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4469999999999999999999998876543
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.63 E-value=0.0015 Score=59.58 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-+.|+||+|+|||++++.+++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348899999999999999999876
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0017 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+-+.|+||+|+|||+|++++++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999865
No 239
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.62 E-value=0.0012 Score=58.53 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.4
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~v 295 (418)
+.|.|++||||||+++.++..+ |.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 6899999999999999999988 8888755
No 240
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.60 E-value=0.00097 Score=61.53 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=24.8
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
++|.|+||+||||+++.+|..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 7899999999999999999999865544
No 241
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.60 E-value=0.00093 Score=62.75 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCe--------eeeehhhHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPF--------FSISGSEFV 301 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pf--------i~vs~sefv 301 (418)
|.-|.|.|++|||||++|+.++..++.++ ..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34588999999999999999999998774 356766654
No 242
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.60 E-value=0.02 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.+|+|+|||+++-.++.+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999887764
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.58 E-value=0.00082 Score=70.48 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=45.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcC--CCeeeeehhh-HHH---Hh--------hhcchhHHHHHHHHHHhCCCeEEEEcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVE---MF--------VGVGASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~se-fve---~~--------vg~~~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
++++.||+|+||||+++++++... ...+.+.... +.- .+ ++.+...+.+++..+....|.+|+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgE 341 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGE 341 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCC
Confidence 699999999999999999998763 2344443322 100 00 011223456677777778899999999
Q ss_pred Cc
Q 014798 332 ID 333 (418)
Q Consensus 332 ID 333 (418)
+-
T Consensus 342 ir 343 (511)
T 2oap_1 342 VR 343 (511)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 244
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.00065 Score=61.14 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
+.-++|.|+|||||||+++.++.+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 445899999999999999999998765543
No 245
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.57 E-value=0.0043 Score=62.02 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||.+++|+-.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7799999999999999999843
No 246
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.56 E-value=0.007 Score=67.69 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCceEECCCCChHHHHHHHHHHh-----cCCC--------------eeeeehhhHHHHhhhcchhHHHHHHHHHH-hCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVP--------------FFSISGSEFVEMFVGVGASRVRDLFKKAK-ENAP 324 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e-----l~~p--------------fi~vs~sefve~~vg~~~~~vr~lF~~A~-~~aP 324 (418)
.-++|+||.|+|||++.|.++.- .+.. |-.+...+.............+++...+. ...|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 34889999999999999999742 1211 11112222211111111111112211111 4678
Q ss_pred eEEEEcCCcccccccCCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 325 CIVFVDEIDAVGRQRGTGIGGGND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 325 ~IIfIDEIDal~~~r~~~~~~~~~-e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
++|++||.-+ +-+. ........++..+.. ..+..+|++|+..+..
T Consensus 754 ~LlLLDEP~~----------GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 754 SLVILDELGR----------GTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CEEEEESTTT----------TSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred CEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 9999999743 2233 233344466766521 2356788899876543
No 247
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.54 E-value=0.0027 Score=67.20 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.+..|.-..|.|+++||.-+ +-+.+.++.+.+.+.++.. +..+|..|++.+.
T Consensus 490 ~iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~ 541 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATS----------ALDTESERAIQAALDELQK-----NKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHH
Confidence 34444556789999999744 2356666667777766531 3467777887653
No 248
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.0073 Score=60.59 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||.+++|+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7799999999999999999843
No 249
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.0043 Score=59.21 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=27.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-CCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs~sefve~ 303 (418)
.-++|.|+||+||||+|+.++.++ +.+ .++...+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~r~~ 40 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDYRQS 40 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHHHHH
Confidence 458999999999999999999864 544 4444455443
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0017 Score=57.93 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=28.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
..+.|+|++|||||++++.+|.. |.+++ +..++...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 45889999999999999999998 76654 55565543
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.49 E-value=0.0036 Score=62.31 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=27.8
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
.....-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3333348999999999999999998754 667666654
No 252
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.49 E-value=0.0036 Score=66.60 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+.|-.+..|.-..|.|+++||.-+ +-+.+.+..+.+.+.++. .+..+|..|++.+.+
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATS----------NVDTKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCT----------TCCHHHHHHHHHHHHHHH-----TTSEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 3445556666678899999999644 345666677777777663 235678888887643
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.49 E-value=0.00078 Score=60.67 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~p 291 (418)
|.-++|.|+|||||||+++.++.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4458999999999999999999876433
No 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.48 E-value=0.0069 Score=68.69 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=33.6
Q ss_pred cCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh
Q 014798 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 234 ~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 287 (418)
+|.++..++|.+.+..... .+-+.|+||.|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~d~-----------~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRP-----------AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCS-----------SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCC-----------CeEEEEEcCCCccHHHHHHHHHHh
Confidence 7888888888887653211 235889999999999999999853
No 255
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.48 E-value=0.0024 Score=67.60 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+.|-.+..|.-..|.|+++||.-+ +-+.+.+..+.+++.++.. +..+|..|++.+.+
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~~ 539 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATS----------ALDLESESIIQEALDVLSK-----DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGGT
T ss_pred HHHHHHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHH
Confidence 334445555567799999999644 3456666777777776631 23567788876643
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0012 Score=62.92 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=27.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.+.|+|++|+|||++++.+|+.++.+|+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 699999999999999999999999876653
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.45 E-value=0.0014 Score=62.01 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.3
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
|..+.|.||+|+|||++++.+|++++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 345889999999999999999999986654 44444
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.45 E-value=0.0024 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
++-+.|+||+|+|||+|++++++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999764
No 259
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.0022 Score=56.87 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve 302 (418)
.-++|.|+||+|||++++.+|..+ +.++..+++..+.+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~ 54 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWART 54 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHH
Confidence 458899999999999999999876 45566677665543
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.44 E-value=0.0032 Score=64.76 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
|.....-++|.|+||+|||++|..+|..+ +.++.+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34444448999999999999999887654 6677766543
No 261
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.44 E-value=0.0044 Score=62.41 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.1
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|||||||.++||+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 7899999999999999999843
No 262
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.43 E-value=0.0078 Score=63.66 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|-.+..|.-..|.|+++||.-+ +-+.+.++.+.+++.++.. +..+|..|++.+.
T Consensus 488 rl~iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~ 541 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATS----------ALDTESERAIQAALDELQK-----NRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTS----------SCCHHHHHHHHHHHHHHHT-----TSEEEEECSCGGG
T ss_pred HHHHHHHHHhCCCEEEEECccc----------cCCHHHHHHHHHHHHHHhC-----CCEEEEEeccHHH
Confidence 3334445556789999999744 3466667777777777642 3467778887654
No 263
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.42 E-value=0.0015 Score=58.41 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVP 291 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~p 291 (418)
-++|.|+||+||||+++.+|.+++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 48899999999999999999988763
No 264
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0066 Score=64.92 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|-.+..|....|.|+++||--+ +-+......+.+++.++.. .+..||..|++.+.+
T Consensus 229 rv~iAraL~~~p~llllDEPts----------~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSS----------YLDVKQRLNAAQIIRSLLA----PTKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTT----------TCCHHHHHHHHHHHHGGGT----TTCEEEEECSCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECccc----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence 3344445567899999999644 2355555666777776642 245678888866544
No 265
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.38 E-value=0.01 Score=61.20 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEEe----CC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT----NR 378 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~~~~ViVIatT----N~ 378 (418)
..++.++.|..+ .|+|+||||+++++.+. .+++...+-+...||..+++-. ..++|++|+|. +.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 344555555334 49999999999865432 2344455557788888888742 24578999997 23
Q ss_pred CCCcchhhhCCCccceEEEecCch--HHHHHH
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS--LMLWFL 408 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL 408 (418)
+.++-|.|+. ||+..+.++++- +..+|+
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERIL 345 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHH
Confidence 4446688887 999999885555 666666
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.37 E-value=0.0026 Score=57.84 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=21.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
-+.|.||+|+|||||++++++.+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999774
No 267
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0078 Score=63.42 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+.|-.+..|....|.|+++||--+- -+......+.+++.++.. +..||..|++.+.+
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~----------LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSY----------LDVRERMNMAKAIRELLK-----NKYVIVVDHDLIVL 200 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHCT-----TSEEEEECSCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHhC-----CCEEEEEEeChHHH
Confidence 4445566666788999999996442 355556667777777742 45778888866543
No 268
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.36 E-value=0.0063 Score=64.60 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.|-.+..|.-..|.|+++||.-+ +-+.+.++.+.+.+.++. .+..+|..|++.+
T Consensus 484 qrQrv~lARal~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~l~ 539 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTS----------SVDPITEKRILDGLKRYT-----KGCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCT----------TSCHHHHHHHHHHHHHHS-----TTCEEEEEESCHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHhC-----CCCEEEEEecChH
Confidence 3444555666667899999999744 346666777777777653 2456777888654
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.36 E-value=0.0024 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=26.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
-+.|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 3789999999999999999985532 3556666654
No 270
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.34 E-value=0.002 Score=58.64 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=30.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sefv 301 (418)
-++|.|++|+|||++++.+++.+ |.+++.+++..+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 58899999999999999999865 4678888766554
No 271
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.01 Score=62.54 Aligned_cols=59 Identities=3% Similarity=0.011 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
..+.|-.+..|....|.|+++||--+ +-+......+.+++.++.. ..+..||..|+..+
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~----------gLD~~~~~~i~~~l~~l~~---~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSS----------YLDVEERYIVAKAIKRVTR---ERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH---HTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 34566677778888999999999533 3455556666677766531 22456677776443
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.31 E-value=0.0031 Score=64.11 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=26.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
|.-++|+|+||+|||++|+.++.+++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3458899999999999999999988765543
No 273
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.30 E-value=0.014 Score=58.22 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHhCCC--eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 316 FKKAKENAP--CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 316 F~~A~~~aP--~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+..+....| .|+++||.++= -+......+.++|..+. .+..||++|+.++
T Consensus 306 lA~~l~~~~~~~~LlLDEpt~~----------LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~ 357 (415)
T 4aby_A 306 LAVSTVLGADTPSVVFDEVDAG----------IGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHHHHCCSSSEEEESSTTTT----------CCHHHHHHHHHHHHHHT-----TTSEEEEECSCHH
T ss_pred HHHHHHhCCCCCEEEEECCCCC----------CCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHH
Confidence 333444567 89999998663 35666677777777764 1456777787654
No 274
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.30 E-value=0.0035 Score=55.92 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+-+.|.||+|+|||||++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999865
No 275
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.30 E-value=0.0023 Score=58.12 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
..+.|+|++|||||++++.+|..+|.+++ +..++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~--~~d~~~ 38 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYV--DTGAMY 38 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcee--cCChHH
Confidence 45899999999999999999999997665 444443
No 276
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.29 E-value=0.0047 Score=56.92 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred ceEECCCCChHH-HHHHHHHH--hcCCCeeeeehh---hHHHHhh---hc-----chhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 267 VLLVGPPGTGKT-LLAKAIAG--EAGVPFFSISGS---EFVEMFV---GV-----GASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 267 VLL~GPPGTGKT-~LArAIA~--el~~pfi~vs~s---efve~~v---g~-----~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
.+++||.|+||| .|.+++.+ +.+..++.+... .+.+.++ |. ......++++..+ ...+|+|||+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDEa 100 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDEG 100 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEch
Confidence 789999999999 89999855 447777777644 2211111 10 0112223333332 3479999999
Q ss_pred ccc
Q 014798 333 DAV 335 (418)
Q Consensus 333 Dal 335 (418)
.-+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 776
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0036 Score=56.72 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=21.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+-+.|+||+|+|||||++.+++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998854
No 278
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.25 E-value=0.0021 Score=60.52 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
.+.|.||+||||||+++.+|+++|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4889999999999999999999987655
No 279
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.0076 Score=61.08 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+.|.||+|||||||+++||+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 3889999999999999999973
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.22 E-value=0.0049 Score=56.01 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=27.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
.-+.|.|++|+|||++++.++. +|.++ ++..++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~--id~D~~~~ 39 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINV--IDADIIAR 39 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEE--EEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEE--EEccHHHH
Confidence 3588999999999999999998 77654 45555543
No 281
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.21 E-value=0.0045 Score=71.76 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+.|-.+..|.-+.|.|+++||.-+- -+.+.++.+.+.+.+.- .+..+|..|+|...+
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSa----------LD~~tE~~Iq~~l~~~~-----~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSA----------LDTESEKVVQEALDRAR-----EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCS----------TTSHHHHHHHHHHTTTS-----SSSEEEEECSSSSTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCcccc----------CCHHHHHHHHHHHHHHc-----CCCEEEEeccCHHHH
Confidence 4444555566678899999997543 35566666666554432 234677778887754
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.20 E-value=0.002 Score=57.52 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-+.|+||+|+||||+++.+++..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999876
No 283
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.009 Score=63.91 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.|-.+..|....|.|+++||--+ +-+......+.+++.++.. ..+..||..|+..+
T Consensus 472 qkQRv~iAraL~~~p~lLlLDEPT~----------gLD~~~~~~i~~ll~~l~~---~~g~tviivtHdl~ 529 (608)
T 3j16_B 472 ELQRVAIVLALGIPADIYLIDEPSA----------YLDSEQRIICSKVIRRFIL---HNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTT----------TCCHHHHHHHHHHHHHHHH---HHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 3455566667778899999999533 3455556666666666521 12356777777543
No 284
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.17 E-value=0.0055 Score=65.32 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.||||||||+++.++...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999998877543
No 285
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.15 E-value=0.0016 Score=64.95 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
+-++|.||+|+|||+|+..+|++++..++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 358999999999999999999999877665543
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.14 E-value=0.0039 Score=59.88 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.-|.|+|++||||||+|+.++ ++|.++ +++.++...
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~~ 111 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGHR 111 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHHH
Confidence 348899999999999999999 677654 566666443
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.13 E-value=0.0028 Score=58.76 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=28.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
..+.|.|++|+|||++++.+|+.+|.+++ +..++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 35889999999999999999999997665 444443
No 288
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.12 E-value=0.01 Score=62.15 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMF 304 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefve~~ 304 (418)
.-|+|+|.||+|||++|+.+|.+++ .+...++..++....
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 3589999999999999999999884 455556777665543
No 289
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.11 E-value=0.0016 Score=58.91 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc-CCCee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA-GVPFF 293 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el-~~pfi 293 (418)
-+.|.|++|+|||++++.+++.+ +++++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 37899999999999999999987 54443
No 290
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.013 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred CCceEECCCCChHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA 285 (418)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 359999999999998776654
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.06 E-value=0.011 Score=58.39 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.6
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|.-+.|+||+|+||||+++.+|+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999865
No 292
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.06 E-value=0.012 Score=61.92 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
+.|-.+..|....|.++++||--+ +-+......+.++|..+.. .+..||.+|++.+.
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs----------~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSS----------YLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLAV 220 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH
Confidence 444455566667899999999643 3355556666777776642 24678888886443
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.04 E-value=0.011 Score=60.39 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=51.5
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC---CeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~---pfi~vs~sefve~ 303 (418)
..+++++.-....+..+.++ +..+. .-++|.||+|+||||+++++++.... .++.+. ... +.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l---~~~~g----------gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e-d~i-e~ 207 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL---IKRPH----------GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPI-EF 207 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH---HTSSS----------EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSC-CS
T ss_pred CCCHHHcCCCHHHHHHHHHH---HHhcC----------CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec-ccc-hh
Confidence 46777775444444444443 22221 13789999999999999999997742 233321 111 10
Q ss_pred h--------hh-cchhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 304 F--------VG-VGASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 304 ~--------vg-~~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
. +. ...-...+.+..+....|.++++.|+
T Consensus 208 ~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 208 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred ccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 00 01112334455555678999999985
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.03 E-value=0.0029 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++.+++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999864
No 295
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.01 E-value=0.023 Score=63.73 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCceEECCCCChHHHHHHHHHHh-----cCC--Ce------------eeeehhhHHHHhhhcchh---HHHHHHHHHHhC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGV--PF------------FSISGSEFVEMFVGVGAS---RVRDLFKKAKEN 322 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e-----l~~--pf------------i~vs~sefve~~vg~~~~---~vr~lF~~A~~~ 322 (418)
.-++|+||.|+|||++.|.+|.- .|. |- -.+...+....-...... .+..++.. ..
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~--a~ 740 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRS--AT 740 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHH--CC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh--cc
Confidence 34889999999999999999532 222 11 111111111111111111 11122221 46
Q ss_pred CCeEEEEcCCcccccccCCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 323 APCIVFVDEIDAVGRQRGTGIGGGND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 323 aP~IIfIDEIDal~~~r~~~~~~~~~-e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.|++|++||.-+ +-+. ........++..+.. ..+..+|++|+..+
T Consensus 741 ~~sLlLLDEp~~----------GlD~~~~~~i~~~il~~l~~---~~g~~vl~aTH~~e 786 (934)
T 3thx_A 741 KDSLIIIDELGR----------GTSTYDGFGLAWAISEYIAT---KIGAFCMFATHFHE 786 (934)
T ss_dssp TTCEEEEESCSC----------SSCHHHHHHHHHHHHHHHHH---TTCCEEEEEESCGG
T ss_pred CCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHh---cCCCEEEEEcCcHH
Confidence 789999999733 1232 233344666666531 23567888998755
No 296
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.00 E-value=0.0026 Score=62.78 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=27.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
|+-++|.||+|+|||+||..+|.+.+..+++.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 445889999999999999999999887666554
No 297
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.0088 Score=54.01 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=27.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
-+.|.||+|+|||++++.+++.+ +.+++..+...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 48899999999999999999875 66666554443
No 298
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.91 E-value=0.029 Score=49.80 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.8
Q ss_pred CCceEECCCCChHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKA 283 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArA 283 (418)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4699999999999987443
No 299
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.89 E-value=0.025 Score=60.42 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+.|-.+..|....|.++++||--+ +-+......+.+++..+.. ..+..||.+|+..+
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~~l~~---~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSA----------YLDVEQRLAVSRAIRHLME---KNEKTALVVEHDVL 533 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH---HTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 334455556667899999999533 3456666667777776521 12345677776543
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.89 E-value=0.0041 Score=57.24 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=14.8
Q ss_pred CceEECCCCChHHHHHHHHH-Hhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIA-GEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA-~el 288 (418)
-+.|.||+|+||||+++.++ +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999999 764
No 301
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.88 E-value=0.042 Score=60.55 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
.-+.|+||+|+|||++.|.+++-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35889999999999999999874
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.86 E-value=0.018 Score=60.13 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+.-++|+||+|+|||||++.+|+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3448899999999999999999865
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.83 E-value=0.016 Score=56.94 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=27.6
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
..++-++++||+|+|||+++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345568899999999999999998765 555555543
No 304
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.81 E-value=0.0029 Score=57.04 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=22.1
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
-+.|.||+|+|||||++.+++.++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999876
No 305
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.0047 Score=56.50 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=26.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
-|.|.||+|||||++++.+|+++|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999874
No 306
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.0038 Score=62.26 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=26.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
-++|.||+|+|||+||+.+|..++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5889999999999999999999886555443
No 307
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.72 E-value=0.012 Score=53.73 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=40.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh---HHHH----hhhcc-----hhHHHHHHHHHHhCCCeEEEEc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE---FVEM----FVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se---fve~----~vg~~-----~~~vr~lF~~A~~~aP~IIfID 330 (418)
-.+++||.|+|||+.+-.+|..+ +..++.+.... ..+. ..|.. .....++++.+. ....+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEE
Confidence 37789999999999988887665 66666654221 1010 11110 111235555443 235799999
Q ss_pred CCccc
Q 014798 331 EIDAV 335 (418)
Q Consensus 331 EIDal 335 (418)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 98776
No 308
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.69 E-value=0.0045 Score=57.74 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.5
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVP 291 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~p 291 (418)
+.|.||+|+|||||++.+++.+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 7799999999999999999987644
No 309
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.68 E-value=0.29 Score=43.88 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=32.3
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCc---cCCCceEECCCCChHHHHHHHHHHh
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+|+|+.-.++..+.+.+. .+..+..++..... ..+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4577775445555544431 12323333221111 1246999999999999877655543
No 310
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.66 E-value=0.0078 Score=60.01 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=44.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcC--CCeeeeehh-hHH-----HH--hh-------hc-chhHHHHHHHHHHhCCCeEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFV-----EM--FV-------GV-GASRVRDLFKKAKENAPCIV 327 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~s-efv-----e~--~v-------g~-~~~~vr~lF~~A~~~aP~II 327 (418)
.++|+||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....|..+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~ 256 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRI 256 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEE
Confidence 699999999999999999998763 223333321 100 00 11 10 23356778888888889999
Q ss_pred EEcCCcc
Q 014798 328 FVDEIDA 334 (418)
Q Consensus 328 fIDEIDa 334 (418)
+++|+..
T Consensus 257 l~~e~r~ 263 (361)
T 2gza_A 257 LLAELRG 263 (361)
T ss_dssp EESCCCS
T ss_pred EEcCchH
Confidence 9999754
No 311
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.65 E-value=0.0045 Score=61.27 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=25.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
-++|.||+|+|||+|+..+|.+++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 4789999999999999999998876554443
No 312
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.64 E-value=0.039 Score=58.93 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=23.2
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
.||+||||||||+++-.+..++ +.++..+..+.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 7899999999997655543332 66666666554
No 313
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.64 E-value=0.016 Score=61.94 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
+.|-.+..|....|.++++||--+ +-+......+.++|.++.. .+..||.+|++.+.
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs----------~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSS----------YLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLAV 290 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHHh----cCCEEEEEecChHH
Confidence 344455556667899999999643 3355566667777777642 24678888886543
No 314
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.63 E-value=0.006 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.2
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|+||+|+|||||++.+++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999876
No 315
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.63 E-value=0.031 Score=58.78 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.|-.+..+....|.++++||--+ +-+......+.+++.++.. ..+..||.+|+..+
T Consensus 406 e~qrv~lAraL~~~p~lLlLDEPt~----------~LD~~~~~~i~~~l~~l~~---~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 406 ELQRVAIAATLLRDADIYLLDEPSA----------YLDVEQRLAVSRAIRHLME---KNEKTALVVEHDVL 463 (538)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTT----------TCCHHHHHHHHHHHHHHHH---HHTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 3445556666677899999999533 3456666667777766521 12345667776443
No 316
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=95.62 E-value=0.028 Score=46.16 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=39.5
Q ss_pred CcccccHHHHH-HHHhcCCccEEEEeeCCeEEEEEecCcccCcceeEEEEEcCCCcHHHHHHHHh
Q 014798 92 SSSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFRE 155 (418)
Q Consensus 92 ~~~~~~~~~f~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (418)
+..+|||++|. ++|++|.|++|.+..+. .+.+.............+.+.++. .+.|.+.|++
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~-~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~ 76 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKR-FVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLET 76 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTT-EEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCC-EEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHH
Confidence 45789999999 79999999999987444 433333322211112235667764 4566666654
No 317
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.58 E-value=0.035 Score=53.70 Aligned_cols=72 Identities=28% Similarity=0.262 Sum_probs=44.7
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh----HHH---Hh---hh---------cch-hHHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE----FVE---MF---VG---------VGA-SRVRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se----fve---~~---vg---------~~~-~~vr~lF~~A 319 (418)
.++.+.++|++|+|||++++.+|+.+ +..+..+++.- ..+ .+ .+ ... ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34557889999999999999998765 44555444321 111 11 01 011 2235667777
Q ss_pred HhCCCeEEEEcCCcc
Q 014798 320 KENAPCIVFVDEIDA 334 (418)
Q Consensus 320 ~~~aP~IIfIDEIDa 334 (418)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 656788999999633
No 318
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.54 E-value=0.038 Score=63.87 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+.|-.+..|.-..|.|+++||.-+ +-+.+.++.+.+.+.+.. .+..+|..|++.+.+
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs----------~lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATS----------ALDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSS----------SCCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHH
Confidence 3445556666667899999999644 346666777777777653 234577778877654
No 319
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.52 E-value=0.012 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.-+.|+||+|+||||+++.+|+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999865
No 320
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.52 E-value=0.02 Score=60.73 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|-.+..|.-..|.|+++||.-+ +-+.+.++.+.+++.++.. +..+|..|++.+.
T Consensus 491 rv~iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~ 544 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATS----------ALDAENEYLVQEALDRLMD-----GRTVLVIAHRLST 544 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCS----------SCCHHHHHHHHHHHHHHHT-----TSEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccc----------CCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHHH
Confidence 3344445556789999999644 3466667777777777642 2467777886543
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.50 E-value=0.0063 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999876
No 322
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.49 E-value=0.0085 Score=64.36 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=32.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef 300 (418)
+.-|+|+|+||+||||+|++++.++ +.+++.+++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3458999999999999999999998 999999876554
No 323
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.49 E-value=0.045 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=18.5
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
+.+++.+|+|+|||+.+-..+-+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 47999999999999987655443
No 324
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.48 E-value=0.02 Score=64.37 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+.|-.+..|....|.|+++||--+ +-+......+.++|.. .+..+|.+|++.+.+
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs----------~LD~~~~~~l~~~L~~-------~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTN----------HLDTVNVAWLVNYLNT-------CGITSITISHDSVFL 608 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTT----------TCCHHHHHHHHHHHHH-------SCSEEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcc----------CCCHHHHHHHHHHHHh-------CCCEEEEEECCHHHH
Confidence 344455556667899999999633 3355556666666665 145677788865543
No 325
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.46 E-value=0.0099 Score=68.72 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
+.|-.+..|.-..|.|+++||.-+- -+.+.++.+.+.+.... .+..+|..|++.+.
T Consensus 532 ~QriaiARal~~~p~iliLDEpts~----------LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 532 KQRIAIARALVRNPKILLLDEATSA----------LDTESEAVVQAALDKAR-----EGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTCS----------SCHHHHHHHHHHHHHHH-----TTSEEEEECSCHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC----------CCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHH
Confidence 4444555555667899999997543 35556666666666543 23467777876543
No 326
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.45 E-value=0.0068 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||.|+|||+|++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999999987
No 327
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.45 E-value=0.017 Score=63.31 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.6
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.||+|+|||+++..++.+
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999987777554
No 328
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.45 E-value=0.019 Score=59.99 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=27.3
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
.|+.|+++|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999998655 666666665
No 329
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.45 E-value=0.0048 Score=57.28 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.++++|.||+|+|||+||.+++.+.. .++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 35799999999999999999998765 54443
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.41 E-value=0.052 Score=55.57 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=28.3
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
.|+.++++|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999998865 4556655543
No 331
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.36 E-value=0.043 Score=58.89 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhCC---CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 310 SRVRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 310 ~~vr~lF~~A~~~a---P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.|-.+..|.... |.|+++||--+ +-+......+.+++.++.. .+..||..|+..+
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~----------~LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTT----------GLHVDDIARLLDVLHRLVD----NGDTVLVIEHNLD 607 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTT----------TCCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 34455555565544 46999999633 3455666677777777642 2567888888654
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.36 E-value=0.0056 Score=59.39 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
|.-+.|.||+|+|||||++.+++.++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44588999999999999999998774
No 333
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.31 E-value=0.0081 Score=56.67 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=25.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+-|.||||+|||++|+.+|..++.+.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 66899999999999999999999887654
No 334
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.25 E-value=0.06 Score=55.11 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=45.8
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhH----HHH---h---hh---------cc-hhHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF----VEM---F---VG---------VG-ASRVRDLFK 317 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sef----ve~---~---vg---------~~-~~~vr~lF~ 317 (418)
..|+.++++|++|+|||+++-.+|..+ |..+..+++.-+ .+. + .+ .. ...+++.++
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346678999999999999999998654 666666665521 111 0 01 01 122356677
Q ss_pred HHHhCCCeEEEEcCC
Q 014798 318 KAKENAPCIVFVDEI 332 (418)
Q Consensus 318 ~A~~~aP~IIfIDEI 332 (418)
.++.....+|+||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 776556689999874
No 335
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.18 E-value=0.043 Score=56.33 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=27.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefv 301 (418)
.-|+|+|.||+|||++++.+|..++ .+...++..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 3589999999999999999998864 344444444433
No 336
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.18 E-value=0.018 Score=57.76 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.0
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
..+.-+.|+||+|+||||+++.+|+.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 344558899999999999999999865
No 337
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.16 E-value=0.028 Score=57.48 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=49.1
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCcchhhhCCC
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRPG 390 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-------------~~~LD~ALlRpG 390 (418)
|.|+||||+|.+. ....+.|+..|+.... .+ +|.+||+ ++.|++.+++
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CE-EEEecCCccccccccccccccccCChhHHh--
Confidence 4699999999994 3467888888885443 35 4444433 6789999999
Q ss_pred ccceEEEecCch--HHHHHHHHhh
Q 014798 391 RFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 391 RFdr~I~v~~lP--~R~~IL~~~l 412 (418)
||.. +.+++++ +..+||+..+
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHH
Confidence 9977 5773444 7777777554
No 338
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.16 E-value=0.036 Score=53.83 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH----HH---Hh---hh---------cc-hhHHHHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VE---MF---VG---------VG-ASRVRDLFKKAK 320 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef----ve---~~---vg---------~~-~~~vr~lF~~A~ 320 (418)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ .+ .+ .+ .. ....++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999998765 556665554311 11 11 01 01 122345666666
Q ss_pred hCCCeEEEEcCC
Q 014798 321 ENAPCIVFVDEI 332 (418)
Q Consensus 321 ~~aP~IIfIDEI 332 (418)
.....+|+||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 566789999874
No 339
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.15 E-value=0.14 Score=46.66 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=29.4
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCC---ccCCCceEECCCCChHHHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LAr 282 (418)
..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34677776445555444321 1222322222111 112579999999999998643
No 340
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.13 E-value=0.028 Score=59.58 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC----CCeeeeehhhHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~sefve 302 (418)
..|+|.|+||+|||++|++++.+++ .+++.+++..+..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3488999999999999999999875 7888888766543
No 341
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.13 E-value=0.042 Score=60.28 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
.-+.|+||+|+|||++.|.+|+-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35889999999999999999874
No 342
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.10 E-value=0.0069 Score=58.61 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=24.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEF 300 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sef 300 (418)
-|.|.||+|+||||+|+.++..++ ..+..+++.+|
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 478999999999999999998765 44555665554
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.01 E-value=0.0046 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred ceEECCCCChHHHHHHHHHHhcC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~ 289 (418)
+.|.|++|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.0079 Score=61.35 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
-++|.||+|+|||+|+..+|..++..++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 478999999999999999999876555443
No 345
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.98 E-value=0.011 Score=57.92 Aligned_cols=24 Identities=33% Similarity=0.708 Sum_probs=21.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
.+.|+||+|+|||+|++++++.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhhhcC
Confidence 488999999999999999998763
No 346
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.96 E-value=0.065 Score=54.86 Aligned_cols=70 Identities=26% Similarity=0.270 Sum_probs=43.0
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh-------HHHHh---hh-------c--chhH-HHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE-------FVEMF---VG-------V--GASR-VRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se-------fve~~---vg-------~--~~~~-vr~lF~~A 319 (418)
.|..++++|++|+|||+++..+|..+ +..+..+++.- ....+ .+ . .... .++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999865 44555444321 11111 11 0 1122 25667776
Q ss_pred HhCCCeEEEEcCC
Q 014798 320 KENAPCIVFVDEI 332 (418)
Q Consensus 320 ~~~aP~IIfIDEI 332 (418)
+....++|+||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5556679999854
No 347
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.96 E-value=0.011 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|+||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 348
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.95 E-value=0.049 Score=58.52 Aligned_cols=34 Identities=38% Similarity=0.439 Sum_probs=23.1
Q ss_pred CCceEECCCCChHHHHHHHH-HHhc--CCCeeeeehh
Q 014798 265 KGVLLVGPPGTGKTLLAKAI-AGEA--GVPFFSISGS 298 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAI-A~el--~~pfi~vs~s 298 (418)
+.+++.+|+|+|||+.+-.. ...+ +...+++...
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 47999999999999988433 3222 4555555443
No 349
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.80 E-value=0.012 Score=54.92 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
-|.|.|++|||||++++.+|.++|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47899999999999999999999998854
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.79 E-value=0.042 Score=54.14 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
|.-+.|.||+||||||+++++++.++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44588999999999999999998775
No 351
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.77 E-value=0.045 Score=54.07 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs 296 (418)
-+.|+|+||+|||+++.+++..+ +..+..++
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 58899999999999999998765 44444443
No 352
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.72 E-value=0.051 Score=54.97 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=30.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehh-hHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE 302 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s-efve 302 (418)
.++|++|+|+|||..+-+++.+.+.+.+.+... .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 489999999999999998888888887777665 4443
No 353
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.72 E-value=0.015 Score=49.31 Aligned_cols=20 Identities=55% Similarity=1.012 Sum_probs=18.5
Q ss_pred ceEECCCCChHHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~ 286 (418)
+++.|++|+|||+|++++.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 89999999999999999964
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.67 E-value=0.012 Score=57.16 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
-+.|.||+|+|||||++.+++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999765
No 355
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.64 E-value=0.015 Score=54.03 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC--CCee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFF 293 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~--~pfi 293 (418)
-+.|.||||+||||+++.+++.++ .+++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 478899999999999999999886 4544
No 356
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.63 E-value=0.035 Score=58.68 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=30.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcC----CCeeeeehhhHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~sefve 302 (418)
.+.|+|++|||||||++++|+.++ ..+..+++.++.+
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 488999999999999999999874 3565677776654
No 357
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.63 E-value=0.038 Score=51.54 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=23.4
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs 296 (418)
.+++||.|+|||+.+-.+|..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999999888886644 66666664
No 358
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.61 E-value=0.015 Score=52.81 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=27.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
++++|++|+|||++|..+|.+ +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888877643
No 359
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.60 E-value=0.47 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.2
Q ss_pred CceEECCCCChHHHHHHHHHHhc--------CCCeeeeehh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--------~~pfi~vs~s 298 (418)
.+++.+|+|+|||..+-..+-+. +...+.+...
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 69999999999999877665443 4555555544
No 360
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.60 E-value=0.085 Score=59.68 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.9
Q ss_pred CCceEECCCCChHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA 285 (418)
.-++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999993
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.55 E-value=0.012 Score=54.21 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.1
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+.|.||+|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999975
No 362
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.53 E-value=0.077 Score=52.22 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=27.3
Q ss_pred CceEECCCCChHHHHHHHHHHhc----CCCeeeeehh-hHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS-EFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~s-efv 301 (418)
++++..|+|+|||+.+-+++.+. +.+.+.+... .+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 69999999999999998886654 5666666554 444
No 363
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.52 E-value=0.014 Score=55.06 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+..|....|.++++||--+ +-+......+.+++.++.. ..+..||.+|+..+
T Consensus 136 ~lAral~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~~---~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLS----------AVDLKTKGVLMEELRFVQR---EFDVPILHVTHDLI 188 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTS----------SCCHHHHHHHHHHHHHHHH---HHTCCEEEEESCHH
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 34445557799999999643 3456666677777776631 11345777787544
No 364
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.43 E-value=0.11 Score=47.46 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCC---ccCCCceEECCCCChHHHHH
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~---~~p~gVLL~GPPGTGKT~LA 281 (418)
+..+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346688875444444444321 1232333322111 11357999999999999864
No 365
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.39 E-value=0.19 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.8
Q ss_pred CCceEECCCCChHHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~ 286 (418)
+.+++.+|+|+|||+.+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999987654443
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.37 E-value=0.017 Score=56.46 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++.|++.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhc
Confidence 47899999999999999999876
No 367
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.053 Score=50.92 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.9
Q ss_pred CCceEECCCCChHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKA 283 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArA 283 (418)
+.+++.+|+|+|||+.+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4699999999999987543
No 368
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.34 E-value=0.045 Score=50.80 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=35.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 318 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~ 318 (418)
.|-|+|..|||||++++.++. +|.+++ ++..+.......+...+.++++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~~~~~~~~~~i~~~ 60 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRITAPAGLAMPAIEQT 60 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHTSTTCTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHhcCCcHHHHHHHHH
Confidence 488999999999999999997 887765 55555555444444444444443
No 369
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.032 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
..+++.|++|+|||+|+.++++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 370
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.32 E-value=0.08 Score=56.79 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCe--EEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKENAPC--IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~--IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+.|-.+..|....|. ++++||--+ +-+......+.+++.++.. .+..||..|+..+
T Consensus 208 ~QRv~iArAL~~~p~~~lLlLDEPts----------gLD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 208 AQRIRLATQIGSRLTGVLYVLDEPSI----------GLHQRDNDRLIATLKSMRD----LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHHHHHHTCCCSCEEEEECTTT----------TCCGGGHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCcc----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHH
Confidence 344555566666777 999999633 3355556666777777642 2457788888644
No 371
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.077 Score=56.97 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=17.8
Q ss_pred CCCceEECCCCChHHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAI 284 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAI 284 (418)
...++++||+|+|||+.+-..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 467999999999999998433
No 372
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.30 E-value=0.24 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.3
Q ss_pred CCceEECCCCChHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA 285 (418)
+.+++.+|+|+|||+.+-..+
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 579999999999998765443
No 373
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.30 E-value=0.083 Score=47.90 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.5
Q ss_pred CCceEECCCCChHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LAr 282 (418)
+.+++.+|+|+|||+.+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998654
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.29 E-value=0.02 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+.-+.|+||+|+||||+++.+|+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4458899999999999999999865
No 375
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.29 E-value=0.044 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-++|+||+|+|||+|++.+|+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 39999999999999999998753
No 376
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.29 E-value=0.22 Score=50.74 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=23.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc--------CCCeeeeehh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--------~~pfi~vs~s 298 (418)
.+++.+|+|+|||..+-..+-+. +...+.+...
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 69999999999999877665443 4555555443
No 377
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.28 E-value=0.14 Score=45.44 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCceEECCCCChHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LAr 282 (418)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997555
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.27 E-value=0.02 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 367999999999999999988764
No 379
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.27 E-value=0.23 Score=54.57 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=24.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
|..+++.||+|+|||..+-..+-+. +...+.+...
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 4579999999999999876554333 5555555443
No 380
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.25 E-value=0.035 Score=47.31 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=19.8
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|++++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999753
No 381
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.24 E-value=0.081 Score=56.96 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=16.7
Q ss_pred CCCceEECCCCChHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LAr 282 (418)
.+.++++||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4579999999999999873
No 382
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.024 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV 290 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~ 290 (418)
-+.|+||+|+|||||++++++....
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999997643
No 383
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.18 E-value=0.27 Score=47.89 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=31.1
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCc---cCCCceEECCCCChHHHHHHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LArAIA 285 (418)
..+|+|+.-.++..+.+.+. .+..+..++.-... ..+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45788876555555544331 12222222221111 12469999999999998665443
No 384
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.16 E-value=0.2 Score=49.03 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=16.2
Q ss_pred CCceEECCCCChHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAI 284 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAI 284 (418)
+.+++.+|+|+|||+.+-..
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHH
Confidence 46999999999999875433
No 385
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.16 E-value=0.1 Score=47.05 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCceEECCCCChHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKA 283 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArA 283 (418)
+.+++.+|+|+|||+.+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999986443
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.16 E-value=0.013 Score=55.71 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
|....|.++++||--+ +-+......+.+++.++.. .+..||.+|+..+
T Consensus 167 aL~~~p~lllLDEPts----------~LD~~~~~~~~~~l~~l~~----~g~tvi~vtHd~~ 214 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTS----------ALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMG 214 (262)
T ss_dssp HHHTCCSEEEEESTTT----------TSCHHHHHHHHHHHHHHHH----TTCCEEEECSCHH
T ss_pred HHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 3446789999999643 3456666777777777631 2456777888644
No 387
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.15 E-value=0.27 Score=48.23 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCc---cCCCceEECCCCChHHHHHHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LArAIA 285 (418)
..+|+++.-.++..+.+.+. .+..+..++....+ ..+.+++.+|+|+|||+.+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45688875455555544331 12333333221111 12579999999999997765443
No 388
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.14 E-value=0.032 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 389
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.12 E-value=0.086 Score=48.50 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCceEECCCCChHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKA 283 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArA 283 (418)
+.+++.+|+|+|||+.+-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 4799999999999987543
No 390
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.08 E-value=0.019 Score=54.20 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=33.7
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
..|....|.++++||-.+- -+......+.+++.++.. .+..||.+|+..+.
T Consensus 155 AraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSG----------LDIDALKVVARGVNAMRG----PNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHCCSEEEEECGGGT----------TCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGG
T ss_pred HHHHHcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHH
Confidence 3344456889999996542 356666777777777632 24677888886654
No 391
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.06 E-value=0.019 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=19.9
Q ss_pred ceEECCCCChHHHHHHHHHHh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e 287 (418)
+.|.||+|+|||||++++++.
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 392
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.05 E-value=0.042 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 393
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.04 E-value=0.019 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38999999999999999887643
No 394
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.04 E-value=0.017 Score=54.29 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.7
Q ss_pred ceEECCCCChHHHHHHHHHHh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e 287 (418)
+.|.||+|+|||||++++++.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999874
No 395
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.99 E-value=0.017 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999854
No 396
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.97 E-value=0.096 Score=55.17 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~ 303 (418)
..++|+|++|+|||++|+.++..+ |.++..+++..+...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~ 414 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTH 414 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhh
Confidence 358899999999999999999876 567777887665443
No 397
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.97 E-value=0.17 Score=42.45 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.3
Q ss_pred ceEECCCCChHHHHHHHHHHh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e 287 (418)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 398
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.92 E-value=0.071 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||||+|||+|.+++++.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999999754
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.91 E-value=0.028 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-+.|.||+|+|||+|++.+++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 358899999999999999998764
No 400
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.89 E-value=0.071 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|+|.|.||+|||+|+.++.+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 59999999999999999997643
No 401
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.82 E-value=0.019 Score=54.34 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=20.1
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|+|||||++++++..
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999998854
No 402
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.82 E-value=0.017 Score=54.97 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.+..|....|.|+++||--+ +-+....+.+.+++.++.. +..+|.+|++.+.
T Consensus 165 ~lAraL~~~p~lllLDEPts----------~LD~~~~~~i~~~l~~l~~-----~~tviivtH~~~~ 216 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATS----------SLDSKTEYLFQKAVEDLRK-----NRTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCC----------TTCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGG
T ss_pred HHHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHHH
Confidence 34444456789999999644 3456667777777777631 3567778886554
No 403
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.79 E-value=0.029 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.|++|+|||+|++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38899999999999999999853
No 404
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.76 E-value=0.02 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.1
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.||+|+|||||++++++..
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999854
No 405
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.75 E-value=0.095 Score=53.99 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=18.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-.++.|+||||||++++.++..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 4789999999999999888753
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.75 E-value=0.043 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|+.+++..+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 407
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.72 E-value=0.21 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|+|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999863
No 408
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.63 E-value=0.028 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.|++|+|||+|++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999854
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.52 E-value=0.11 Score=45.46 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.1
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 410
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.51 E-value=0.028 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.11 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998753
No 412
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.44 E-value=0.015 Score=54.73 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-CCCee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 293 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-~~pfi 293 (418)
.-|.|.|++|+||||+++.++.++ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 348899999999999999999998 44443
No 413
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.44 E-value=0.097 Score=54.79 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc
Q 014798 236 VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 236 ~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+-+.+.+..+++.+.... +.+++++|+|+|||..+-.++..+
T Consensus 180 r~~Q~~ai~~~~~~~~~~~----------~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 180 RYYQQIAINRAVQSVLQGK----------KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CHHHHHHHHHHHHHHHTTC----------SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCC----------CceEEEecCCCChHHHHHHHHHHH
Confidence 3445555555555554322 358999999999999987776643
No 414
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.028 Score=51.94 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+-+.|.|++|+||||+++.++..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 348899999999999999999998
No 415
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.41 E-value=0.017 Score=56.07 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=24.7
Q ss_pred hhcCCccCCC--ceEECCCCChHHHHHHHHHHhc
Q 014798 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 257 ~~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el 288 (418)
..+....+.| +.|.||+|+|||||++++++..
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344444444 7899999999999999999854
No 416
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.022 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|+||+|+|||||++.+++.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 417
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.40 E-value=0.038 Score=57.88 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=27.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCC-----Ceeeeehhh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSISGSE 299 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~-----pfi~vs~se 299 (418)
..++|.|.+||||||+++++|.+++. ++..+++..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35889999999999999999999874 444555544
No 418
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.39 E-value=0.025 Score=54.01 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 314 ~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
-.+..|....|.++++||-.+ +-+....+.+.+++.++.. .+|.+|+..+.
T Consensus 137 v~lAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~L~~~~~-------tviivtHd~~~ 187 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFE----------NVDAARRHVISRYIKEYGK-------EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTT----------TCCHHHHHHHHHHHHHSCS-------EEEEEESCGGG
T ss_pred HHHHHHHHhCCCEEEEECCcc----------ccCHHHHHHHHHHHHHhcC-------cEEEEEcCHHH
Confidence 344445556799999999644 3456666777777777642 67778886554
No 419
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.16 Score=57.83 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=23.2
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
.+++++|+|+|||+.+-..+-+. +...+++...
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 69999999999999876554333 5455555443
No 420
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.30 E-value=0.11 Score=47.87 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.8
Q ss_pred CceEECCCCChHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 266 gVLL~GPPGTGKT~LAr 282 (418)
.+++.+|+|+|||+.+-
T Consensus 62 ~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 69999999999998644
No 421
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.29 E-value=0.04 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.+.|++|+|||+++..++.++
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998765
No 422
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.27 E-value=0.082 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999998643
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.20 E-value=0.16 Score=46.85 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc--CCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--~~pfi~vs 296 (418)
.+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 47889999999999999998654 44444444
No 424
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.05 E-value=0.047 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|+.++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 425
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.04 E-value=0.032 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
+|++|.|++|+|||++|.++...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 58999999999999999999874
No 426
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.01 E-value=0.61 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.3
Q ss_pred CceEECCCCChHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~ 286 (418)
++++.+|+|+|||+.+-..+.
T Consensus 30 ~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 30 NTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCchHHHHHHHHHH
Confidence 699999999999998776654
No 427
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.01 E-value=0.11 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.|+||+|||+++.++++.+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998754
No 428
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.97 E-value=0.19 Score=51.89 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCceEECCCCChHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LAr 282 (418)
+.+++.+|+|+|||+.+-
T Consensus 112 ~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCccHHHH
Confidence 479999999999998533
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.94 E-value=0.21 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-|+|.|++|+|||+|+.++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 49999999999999999998754
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.91 E-value=0.072 Score=49.12 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=23.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~v 295 (418)
-+.|.|++|+|||++++.++..+ +.+++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 37788999999999999999876 4555443
No 431
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.87 E-value=0.097 Score=45.67 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+++.|++|+|||+|.+++.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999764
No 432
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.86 E-value=0.15 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.|+||+|||+|..++++..
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998753
No 433
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.83 E-value=0.052 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 434
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.77 E-value=0.26 Score=45.74 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCceEECCCCChHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LAr 282 (418)
+.+++.+|+|+|||+.+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998644
No 435
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.73 E-value=0.17 Score=47.78 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=49.1
Q ss_pred ceEECCCCChHHHHHHHHHHh---cCCCeeeeehh-------hHHHHhhhcc-----hhHHHHHHHHHHhCCCeEEEEcC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS-------EFVEMFVGVG-----ASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~s-------efve~~vg~~-----~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
.+++||.|+|||+.+-..+.. .+..++.+... ...+.. |.. .....++++.+ ....+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 678999999999766665443 35555554321 111111 110 01113345544 3457999999
Q ss_pred CcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 332 IDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
+.-+. + +.+++..++. .++.||++.-+
T Consensus 99 aQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 99 GQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp GGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred hhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 97662 1 4556666653 45677777654
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.72 E-value=0.096 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-++|.|++|+|||+|+..++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998775
No 437
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.70 E-value=0.15 Score=51.59 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=21.6
Q ss_pred CCceEECCCCChHHHHH-HHHHH---hcCCCeeeeeh
Q 014798 265 KGVLLVGPPGTGKTLLA-KAIAG---EAGVPFFSISG 297 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LA-rAIA~---el~~pfi~vs~ 297 (418)
+.+++.||+|+|||+.+ -++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 36999999999999976 44432 23444444443
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.66 E-value=0.051 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.++|+|++|+|||+|+.++++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998864
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.63 E-value=0.043 Score=47.14 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999863
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.62 E-value=0.037 Score=48.49 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=19.0
Q ss_pred ceEECCCCChHHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~ 286 (418)
++|.|++|+|||+|++.+++
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999986
No 441
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.61 E-value=0.58 Score=48.80 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCCceEECCCCChHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LAr 282 (418)
.+.+++.+|+|+|||+.+-
T Consensus 60 ~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHH
Confidence 3469999999999998543
No 442
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.54 E-value=0.16 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999764
No 443
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.53 E-value=0.053 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 444
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.50 E-value=0.061 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|+.++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 445
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.50 E-value=0.18 Score=46.09 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=15.2
Q ss_pred CCceEECCCCChHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LAr 282 (418)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 369999999999998643
No 446
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.47 E-value=0.2 Score=46.97 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|.+|+|||+|+.++.+.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998754
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.45 E-value=0.088 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGV 290 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~ 290 (418)
+.|.||+|||||+|++.+|+....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccCC
Confidence 889999999999999999998743
No 448
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.45 E-value=0.062 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.44 E-value=0.076 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=17.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+||||+++.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999876
No 450
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.42 E-value=0.054 Score=57.74 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=18.5
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988877654
No 451
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.40 E-value=0.065 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|++++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 452
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.055 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||+|.+++.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 48999999999999999998854
No 453
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.32 E-value=0.7 Score=45.14 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.8
Q ss_pred CCceEECCCCChHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLA 281 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LA 281 (418)
+.+++.+|+|+|||+.+
T Consensus 53 ~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEcCCCCHHHHHH
Confidence 57999999999999743
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.29 E-value=0.068 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 455
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.26 E-value=0.068 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.2
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.26 E-value=0.055 Score=46.91 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.2
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+.|.|++|+|||+|++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 457
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.23 E-value=0.066 Score=54.58 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred CceEECCCCChHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~ 286 (418)
-+.|.||+|+|||||.+++++
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 378999999999999999998
No 458
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.19 E-value=0.071 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 59999999999999999998743
No 459
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.15 E-value=0.03 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
+.|+||+|+|||+|+++|++.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5689999999999999999876
No 460
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.10 E-value=0.062 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 461
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.09 E-value=0.073 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.05 E-value=0.065 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 463
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.04 E-value=0.071 Score=46.16 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.5
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
.+|+||.|+|||++..|+.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999997544
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.03 E-value=0.23 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|+|.|++|+|||+|+..+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4999999999999999999764
No 465
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.01 E-value=0.076 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 466
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.00 E-value=0.075 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|+|.|++|+|||+|+.++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 467
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.94 E-value=0.13 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
.++++.||+|+|||++++.++..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 468
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.91 E-value=0.095 Score=50.97 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-++|.|+.|+|||||++.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 37899999999999999999764
No 469
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.85 E-value=0.073 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 470
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.80 E-value=0.082 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.4
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.78 E-value=0.081 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 49999999999999999988754
No 472
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.72 E-value=0.08 Score=44.83 Aligned_cols=20 Identities=50% Similarity=0.845 Sum_probs=18.5
Q ss_pred ceEECCCCChHHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~ 286 (418)
+++.|++|+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999964
No 473
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.65 E-value=0.89 Score=45.63 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCc---cCCCceEECCCCChHHHHH
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLA 281 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~---~p~gVLL~GPPGTGKT~LA 281 (418)
+-.+|+++.-.+.+.+.+.+. .+..|..++...++ ..+.+++.+|+|+|||+.+
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 345677764444444433221 13333333222111 1357999999999999843
No 474
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.64 E-value=0.087 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+++.|++|+|||+|+.++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998743
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.64 E-value=0.11 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=23.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVP 291 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~p 291 (418)
-+.+.|++|+|||++++.++..++.+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 47888999999999999999998753
No 476
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.57 E-value=0.09 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999764
No 477
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.56 E-value=0.087 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
-+.|.||+|+|||+|.+++++...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 378999999999999999997653
No 478
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.56 E-value=0.09 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 49999999999999999998743
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.55 E-value=0.089 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.55 E-value=0.062 Score=46.68 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.1
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
No 481
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.54 E-value=0.067 Score=49.23 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEECCCCChHHHHHHHHHHh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~e 287 (418)
+.|.||.|+||||+++.+++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 779999999999999999987
No 482
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.54 E-value=0.08 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.0
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 483
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.52 E-value=0.089 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
..|++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999763
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.47 E-value=0.094 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.1
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.46 E-value=0.084 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.3
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|+.++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 486
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.46 E-value=0.33 Score=46.63 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.0
Q ss_pred CCCceEECCCCChHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LAr 282 (418)
++.+++++|+|||||+..-
T Consensus 131 ~~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 4689999999999997643
No 487
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.46 E-value=0.028 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.|++|+|||+|.+++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999997543
No 488
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.45 E-value=0.093 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|+|.|++|+|||+|+.++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998743
No 489
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.43 E-value=0.049 Score=47.56 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCceEECCCCChHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e 287 (418)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999764
No 490
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=91.38 E-value=1.5 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhc--------CCCeeeeeh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el--------~~pfi~vs~ 297 (418)
+.+++.+|+|+|||..+-..+.+. +.+.+.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 469999999999999877665544 555665554
No 491
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.5 Score=53.30 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=23.1
Q ss_pred CceEECCCCChHHHHHHHHHHh---cCCCeeeeehh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~s 298 (418)
.+++.+|+|+|||+.+...+.. .+...+++...
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 5999999999999987543322 25556666543
No 492
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.29 E-value=0.085 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-+.|.|++|+|||++++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999998866
No 493
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.27 E-value=0.12 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=22.0
Q ss_pred ceEECCCCChHHHHHHHHHHhcCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGV 290 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~ 290 (418)
+.|.||+|+|||+|++.+++....
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 889999999999999999998754
No 494
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.26 E-value=0.56 Score=45.59 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCCceEECCCCChHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAK 282 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LAr 282 (418)
++.+++.+|+|+|||+.+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 3579999999999998753
No 495
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.15 E-value=0.091 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.+++.|++|+|||+|++++.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.13 E-value=0.094 Score=44.70 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.3
Q ss_pred CceEECCCCChHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~ 286 (418)
.|++.|++|+|||+|+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999965
No 497
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.13 E-value=0.16 Score=50.23 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCceEECCCCChHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA 285 (418)
+.+++.+|+|+|||+.+-..+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999554443
No 498
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.12 E-value=0.11 Score=44.54 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|+.++.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999998743
No 499
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.09 E-value=0.093 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.|++.|++|+|||+|++++.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998643
No 500
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.04 E-value=0.11 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.9
Q ss_pred CceEECCCCChHHHHHHHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~e 287 (418)
.|++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
Done!