Query 014801
Match_columns 418
No_of_seqs 183 out of 1975
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.2E-59 2.6E-64 427.4 35.1 375 33-411 87-472 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 9.1E-60 2E-64 402.1 30.4 365 36-405 60-425 (476)
3 PRK11776 ATP-dependent RNA hel 100.0 2.7E-58 5.8E-63 437.7 43.1 363 37-404 4-366 (460)
4 PTZ00110 helicase; Provisional 100.0 1.9E-58 4E-63 442.5 41.6 376 32-411 125-508 (545)
5 PRK04837 ATP-dependent RNA hel 100.0 4.7E-58 1E-62 431.4 42.2 369 33-406 4-381 (423)
6 PRK10590 ATP-dependent RNA hel 100.0 1.1E-57 2.3E-62 431.5 42.1 362 38-404 2-369 (456)
7 COG0513 SrmB Superfamily II DN 100.0 2.6E-57 5.7E-62 430.4 41.8 366 37-404 29-398 (513)
8 PRK11634 ATP-dependent RNA hel 100.0 4.1E-57 8.9E-62 436.6 42.7 367 37-407 6-372 (629)
9 KOG0326 ATP-dependent RNA heli 100.0 3.6E-59 7.7E-64 388.5 23.8 400 5-416 59-458 (459)
10 PRK04537 ATP-dependent RNA hel 100.0 5E-57 1.1E-61 433.9 42.4 365 37-406 9-383 (572)
11 PLN00206 DEAD-box ATP-dependen 100.0 4.8E-57 1E-61 431.8 41.3 378 33-416 117-504 (518)
12 PRK01297 ATP-dependent RNA hel 100.0 3.1E-56 6.8E-61 424.5 43.0 363 37-403 87-458 (475)
13 KOG0328 Predicted ATP-dependen 100.0 2.5E-57 5.5E-62 371.2 29.9 370 36-410 26-396 (400)
14 PRK11192 ATP-dependent RNA hel 100.0 6.8E-56 1.5E-60 418.9 43.5 362 38-404 2-369 (434)
15 PTZ00424 helicase 45; Provisio 100.0 4.2E-55 9.1E-60 411.0 42.3 370 36-410 27-397 (401)
16 KOG0333 U5 snRNP-like RNA heli 100.0 3.2E-53 6.9E-58 374.8 34.7 370 27-400 235-638 (673)
17 KOG0345 ATP-dependent RNA heli 100.0 3.3E-53 7.2E-58 370.2 33.4 369 37-407 4-384 (567)
18 KOG0340 ATP-dependent RNA heli 100.0 2E-53 4.4E-58 359.1 28.8 369 36-408 6-382 (442)
19 KOG0336 ATP-dependent RNA heli 100.0 2.9E-53 6.3E-58 364.4 28.3 372 35-411 217-596 (629)
20 KOG0338 ATP-dependent RNA heli 100.0 9.9E-54 2.1E-58 376.7 25.7 357 37-398 181-544 (691)
21 KOG0335 ATP-dependent RNA heli 100.0 2.5E-52 5.4E-57 373.1 28.8 382 27-412 64-469 (482)
22 KOG0346 RNA helicase [RNA proc 100.0 3.5E-52 7.6E-57 360.8 27.3 373 37-412 19-435 (569)
23 KOG0342 ATP-dependent RNA heli 100.0 1.6E-51 3.5E-56 362.0 30.7 358 36-396 81-446 (543)
24 KOG0343 RNA Helicase [RNA proc 100.0 3.8E-51 8.3E-56 363.6 29.8 358 37-398 69-434 (758)
25 TIGR03817 DECH_helic helicase/ 100.0 8.6E-50 1.9E-54 393.2 38.3 352 43-406 20-407 (742)
26 KOG0329 ATP-dependent RNA heli 100.0 3.1E-52 6.7E-57 336.7 16.8 356 25-416 30-385 (387)
27 KOG0332 ATP-dependent RNA heli 100.0 2.9E-49 6.3E-54 336.0 26.4 370 33-408 86-465 (477)
28 KOG0339 ATP-dependent RNA heli 100.0 1.5E-48 3.2E-53 343.8 30.6 380 27-411 213-599 (731)
29 KOG0327 Translation initiation 100.0 3.9E-49 8.5E-54 337.8 26.2 369 38-412 27-395 (397)
30 KOG0348 ATP-dependent RNA heli 100.0 9.2E-49 2E-53 347.3 27.6 364 33-399 132-566 (708)
31 PLN03137 ATP-dependent DNA hel 100.0 6.3E-47 1.4E-51 370.9 38.1 333 38-387 436-788 (1195)
32 KOG4284 DEAD box protein [Tran 100.0 6.4E-48 1.4E-52 348.8 25.8 369 24-395 12-388 (980)
33 KOG0341 DEAD-box protein abstr 100.0 3E-49 6.5E-54 337.6 16.1 378 29-410 162-552 (610)
34 TIGR00614 recQ_fam ATP-depende 100.0 9.3E-47 2E-51 357.9 34.6 318 55-389 7-336 (470)
35 PRK02362 ski2-like helicase; P 100.0 5E-47 1.1E-51 378.0 33.4 359 38-412 2-421 (737)
36 PRK11057 ATP-dependent DNA hel 100.0 1.5E-45 3.3E-50 358.3 36.2 324 46-387 11-344 (607)
37 KOG0347 RNA helicase [RNA proc 100.0 1.9E-47 4.2E-52 339.9 20.4 363 32-400 176-583 (731)
38 KOG0334 RNA helicase [RNA proc 100.0 8.6E-46 1.9E-50 354.1 28.7 372 31-407 359-740 (997)
39 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-45 2.6E-50 325.1 27.0 361 38-400 128-554 (620)
40 TIGR01389 recQ ATP-dependent D 100.0 3.9E-45 8.4E-50 356.9 33.3 316 55-387 9-332 (591)
41 PRK00254 ski2-like helicase; P 100.0 4.5E-45 9.8E-50 363.0 33.2 354 38-409 2-408 (720)
42 PRK13767 ATP-dependent helicas 100.0 2.3E-44 4.9E-49 361.9 35.8 355 44-405 18-418 (876)
43 COG1201 Lhr Lhr-like helicases 100.0 4.1E-44 8.9E-49 344.3 31.9 356 43-405 7-382 (814)
44 KOG0344 ATP-dependent RNA heli 100.0 3.3E-44 7.2E-49 323.2 24.2 382 26-410 121-518 (593)
45 PRK01172 ski2-like helicase; P 100.0 2.1E-43 4.6E-48 349.8 32.0 353 38-411 2-400 (674)
46 KOG0337 ATP-dependent RNA heli 100.0 4.9E-44 1.1E-48 308.7 22.7 364 36-404 20-385 (529)
47 COG1111 MPH1 ERCC4-like helica 100.0 6.3E-42 1.4E-46 303.9 33.6 323 56-386 12-481 (542)
48 TIGR00580 mfd transcription-re 100.0 1.2E-41 2.7E-46 338.4 38.5 322 44-386 436-770 (926)
49 PRK10917 ATP-dependent DNA hel 100.0 2.1E-40 4.6E-45 325.7 37.6 319 47-386 249-589 (681)
50 TIGR00643 recG ATP-dependent D 100.0 2.1E-40 4.6E-45 323.8 36.7 317 48-384 225-564 (630)
51 PRK10689 transcription-repair 100.0 3.6E-40 7.8E-45 334.8 38.1 318 47-386 589-919 (1147)
52 COG0514 RecQ Superfamily II DN 100.0 2.2E-40 4.8E-45 307.5 29.4 319 56-389 14-340 (590)
53 COG1204 Superfamily II helicas 100.0 5.5E-41 1.2E-45 327.2 25.6 337 44-390 16-412 (766)
54 COG1202 Superfamily II helicas 100.0 2.3E-40 4.9E-45 296.6 25.7 346 29-386 186-553 (830)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3E-39 6.5E-44 312.6 35.1 317 55-383 12-388 (844)
56 PRK09751 putative ATP-dependen 100.0 1.7E-39 3.8E-44 331.5 32.8 322 79-406 1-406 (1490)
57 PHA02558 uvsW UvsW helicase; P 100.0 2E-38 4.4E-43 302.4 29.7 307 58-384 113-450 (501)
58 KOG0952 DNA/RNA helicase MER3/ 100.0 3.9E-38 8.5E-43 299.7 21.7 335 56-398 107-503 (1230)
59 PHA02653 RNA helicase NPH-II; 100.0 1E-36 2.2E-41 293.4 31.0 309 61-388 166-516 (675)
60 KOG0354 DEAD-box like helicase 100.0 4.8E-37 1E-41 288.6 27.1 334 44-386 47-529 (746)
61 COG1205 Distinct helicase fami 100.0 2.4E-36 5.1E-41 298.9 32.0 352 44-400 55-437 (851)
62 TIGR01587 cas3_core CRISPR-ass 100.0 5.6E-37 1.2E-41 283.5 22.2 300 76-387 1-337 (358)
63 PRK13766 Hef nuclease; Provisi 100.0 2.8E-35 6E-40 297.4 35.5 323 57-387 13-480 (773)
64 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.9E-35 4.2E-40 291.4 31.4 301 64-385 7-335 (819)
65 PRK11664 ATP-dependent RNA hel 100.0 1.6E-35 3.5E-40 292.6 30.9 303 64-386 10-339 (812)
66 PRK09401 reverse gyrase; Revie 100.0 3.7E-35 8.1E-40 299.0 32.8 303 51-372 72-430 (1176)
67 TIGR00603 rad25 DNA repair hel 100.0 3.2E-35 7E-40 281.8 29.1 306 59-389 255-610 (732)
68 PRK12898 secA preprotein trans 100.0 5E-35 1.1E-39 277.4 30.0 316 59-388 103-588 (656)
69 KOG0951 RNA helicase BRR2, DEA 100.0 3.8E-36 8.3E-41 289.8 22.1 385 3-407 264-723 (1674)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 1.7E-34 3.6E-39 263.7 30.6 293 63-371 1-357 (357)
71 PRK14701 reverse gyrase; Provi 100.0 8.2E-35 1.8E-39 302.5 31.9 322 47-384 67-454 (1638)
72 TIGR03714 secA2 accessory Sec 100.0 4.7E-34 1E-38 273.9 30.3 320 59-389 68-540 (762)
73 PRK09200 preprotein translocas 100.0 4.9E-34 1.1E-38 276.4 29.8 320 56-389 76-544 (790)
74 TIGR00963 secA preprotein tran 100.0 8.4E-34 1.8E-38 270.4 29.2 317 59-389 56-520 (745)
75 COG1200 RecG RecG-like helicas 100.0 3.5E-33 7.5E-38 259.0 32.1 325 44-389 247-594 (677)
76 KOG0351 ATP-dependent DNA heli 100.0 1.4E-33 3.1E-38 277.2 29.4 329 54-398 259-604 (941)
77 KOG0352 ATP-dependent DNA heli 100.0 4.3E-34 9.3E-39 247.8 19.9 323 48-389 7-365 (641)
78 PRK04914 ATP-dependent helicas 100.0 5.1E-32 1.1E-36 268.7 32.1 336 59-403 152-619 (956)
79 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-32 3.5E-37 256.6 27.0 294 57-373 34-376 (442)
80 PRK05580 primosome assembly pr 100.0 8.1E-32 1.8E-36 264.0 32.2 342 58-417 143-580 (679)
81 TIGR01054 rgy reverse gyrase. 100.0 9.6E-32 2.1E-36 274.6 33.1 294 47-358 66-409 (1171)
82 KOG0353 ATP-dependent DNA heli 100.0 4.3E-32 9.4E-37 232.4 21.5 331 41-386 75-467 (695)
83 COG1197 Mfd Transcription-repa 100.0 1.4E-30 3.1E-35 254.8 33.3 325 41-386 576-913 (1139)
84 TIGR00595 priA primosomal prot 100.0 3.5E-31 7.6E-36 250.5 26.5 322 78-417 1-412 (505)
85 KOG0349 Putative DEAD-box RNA 100.0 1.2E-31 2.6E-36 233.2 19.5 278 105-386 286-615 (725)
86 KOG0947 Cytoplasmic exosomal R 100.0 7.5E-31 1.6E-35 247.7 23.1 329 58-410 296-745 (1248)
87 PRK09694 helicase Cas3; Provis 100.0 5.6E-30 1.2E-34 252.7 29.3 313 57-375 284-664 (878)
88 COG4581 Superfamily II RNA hel 100.0 3.8E-30 8.2E-35 251.7 25.1 339 56-413 117-562 (1041)
89 cd00268 DEADc DEAD-box helicas 100.0 1E-29 2.2E-34 216.1 23.4 200 39-241 1-202 (203)
90 PRK11131 ATP-dependent RNA hel 100.0 1.4E-29 3.1E-34 254.9 27.6 298 62-386 77-411 (1294)
91 KOG0948 Nuclear exosomal RNA h 100.0 5.1E-31 1.1E-35 243.1 15.6 334 58-415 128-565 (1041)
92 PRK11448 hsdR type I restricti 100.0 6.6E-29 1.4E-33 252.1 29.3 318 58-384 412-813 (1123)
93 PRK13104 secA preprotein trans 100.0 2.1E-28 4.5E-33 236.9 28.5 317 59-389 82-590 (896)
94 PRK12904 preprotein translocas 100.0 2.4E-28 5.2E-33 236.3 28.3 317 59-389 81-576 (830)
95 COG4098 comFA Superfamily II D 100.0 2.6E-27 5.5E-32 200.6 29.1 298 59-384 97-414 (441)
96 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.2E-28 4.7E-33 247.3 26.2 299 65-386 73-404 (1283)
97 PRK12906 secA preprotein trans 100.0 6.3E-28 1.4E-32 232.4 25.9 317 59-389 80-556 (796)
98 PLN03142 Probable chromatin-re 100.0 1.5E-27 3.3E-32 237.9 27.0 332 59-400 169-614 (1033)
99 KOG0950 DNA polymerase theta/e 100.0 5.9E-28 1.3E-32 229.5 22.4 355 39-413 203-634 (1008)
100 PRK12899 secA preprotein trans 100.0 1.1E-26 2.5E-31 224.5 31.4 149 39-194 64-228 (970)
101 PRK13107 preprotein translocas 99.9 1.1E-25 2.5E-30 217.3 26.2 317 59-389 82-594 (908)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 4.1E-26 8.8E-31 188.3 17.1 165 61-228 1-167 (169)
103 COG1203 CRISPR-associated heli 99.9 5.5E-25 1.2E-29 218.1 23.0 323 59-386 195-550 (733)
104 TIGR00348 hsdR type I site-spe 99.9 6E-24 1.3E-28 208.6 28.9 298 60-373 239-634 (667)
105 COG4096 HsdR Type I site-speci 99.9 9E-25 2E-29 206.0 21.4 306 58-384 164-543 (875)
106 COG1643 HrpA HrpA-like helicas 99.9 2.5E-24 5.4E-29 209.8 24.5 306 61-385 52-386 (845)
107 COG1198 PriA Primosomal protei 99.9 8E-25 1.7E-29 210.1 20.1 341 58-417 197-634 (730)
108 KOG0949 Predicted helicase, DE 99.9 2.9E-24 6.4E-29 203.9 21.2 160 59-225 511-673 (1330)
109 KOG0385 Chromatin remodeling c 99.9 5.7E-24 1.2E-28 197.6 20.3 329 59-401 167-615 (971)
110 COG1110 Reverse gyrase [DNA re 99.9 1.2E-22 2.5E-27 194.9 29.4 289 50-357 73-416 (1187)
111 KOG0922 DEAH-box RNA helicase 99.9 2.3E-23 5E-28 192.0 20.8 308 61-386 53-390 (674)
112 TIGR01407 dinG_rel DnaQ family 99.9 2.1E-21 4.5E-26 196.7 33.0 350 45-401 232-830 (850)
113 PRK12326 preprotein translocas 99.9 6.2E-22 1.3E-26 187.3 25.5 317 59-389 78-550 (764)
114 COG4889 Predicted helicase [Ge 99.9 7.1E-24 1.5E-28 199.2 11.0 329 37-373 140-572 (1518)
115 KOG0387 Transcription-coupled 99.9 8.4E-22 1.8E-26 184.1 22.3 312 59-381 205-651 (923)
116 TIGR00631 uvrb excinuclease AB 99.9 2.2E-20 4.8E-25 181.4 32.9 133 278-411 441-586 (655)
117 KOG0923 mRNA splicing factor A 99.9 6.7E-22 1.4E-26 181.1 20.7 310 59-385 265-605 (902)
118 COG0556 UvrB Helicase subunit 99.9 1.9E-20 4.1E-25 168.2 27.6 166 213-386 386-557 (663)
119 PRK13103 secA preprotein trans 99.9 3E-21 6.6E-26 187.1 24.3 317 59-389 82-594 (913)
120 PRK12900 secA preprotein trans 99.9 1.6E-21 3.4E-26 189.7 21.6 130 258-389 575-714 (1025)
121 KOG1123 RNA polymerase II tran 99.9 5.9E-22 1.3E-26 176.1 15.7 303 59-385 302-652 (776)
122 KOG0920 ATP-dependent RNA heli 99.9 1.2E-20 2.6E-25 183.5 25.0 317 59-387 173-545 (924)
123 KOG0384 Chromodomain-helicase 99.9 9.4E-22 2E-26 191.4 17.0 341 38-398 355-824 (1373)
124 KOG0390 DNA repair protein, SN 99.9 3.4E-20 7.4E-25 177.4 26.5 316 59-382 238-701 (776)
125 KOG0924 mRNA splicing factor A 99.9 4.3E-21 9.2E-26 176.4 16.0 309 59-385 356-696 (1042)
126 KOG1000 Chromatin remodeling p 99.9 1.1E-19 2.4E-24 161.4 23.3 327 59-400 198-618 (689)
127 smart00487 DEXDc DEAD-like hel 99.9 7.9E-20 1.7E-24 155.0 21.9 187 55-244 4-191 (201)
128 PRK07246 bifunctional ATP-depe 99.9 8.8E-19 1.9E-23 175.2 31.3 331 59-401 245-799 (820)
129 PRK05298 excinuclease ABC subu 99.9 7.6E-19 1.7E-23 172.1 30.0 133 278-411 445-590 (652)
130 PRK12903 secA preprotein trans 99.9 1.4E-19 3E-24 173.9 23.5 316 59-389 78-542 (925)
131 KOG0392 SNF2 family DNA-depend 99.8 1.1E-19 2.4E-24 176.7 19.5 326 59-396 975-1464(1549)
132 KOG0389 SNF2 family DNA-depend 99.8 2.4E-19 5.1E-24 167.7 18.2 331 59-400 399-903 (941)
133 CHL00122 secA preprotein trans 99.8 4E-18 8.7E-23 164.9 24.9 274 59-346 76-491 (870)
134 PRK08074 bifunctional ATP-depe 99.8 2.4E-17 5.2E-22 167.9 31.2 123 278-400 751-908 (928)
135 KOG0926 DEAH-box RNA helicase 99.8 2.5E-19 5.4E-24 167.6 14.7 308 64-385 261-703 (1172)
136 TIGR03117 cas_csf4 CRISPR-asso 99.8 6.7E-17 1.5E-21 154.7 31.6 120 278-399 469-629 (636)
137 KOG0953 Mitochondrial RNA heli 99.8 7.7E-19 1.7E-23 158.4 16.1 265 76-384 193-475 (700)
138 cd00079 HELICc Helicase superf 99.8 1.5E-18 3.3E-23 136.5 14.7 118 265-382 12-131 (131)
139 KOG4150 Predicted ATP-dependen 99.8 8.1E-19 1.8E-23 158.6 14.3 354 46-406 273-661 (1034)
140 PRK12902 secA preprotein trans 99.8 6.1E-17 1.3E-21 156.5 24.5 127 59-194 85-218 (939)
141 KOG0925 mRNA splicing factor A 99.8 1.1E-17 2.4E-22 148.6 17.6 325 36-385 24-386 (699)
142 KOG1002 Nucleotide excision re 99.8 4.5E-17 9.7E-22 145.1 19.9 121 278-398 637-761 (791)
143 PF04851 ResIII: Type III rest 99.8 2.8E-18 6.1E-23 143.5 10.2 152 59-224 3-183 (184)
144 KOG0951 RNA helicase BRR2, DEA 99.7 1.4E-16 3.1E-21 155.8 21.0 314 59-395 1143-1503(1674)
145 PF00271 Helicase_C: Helicase 99.7 4.6E-18 1E-22 120.2 8.0 78 297-374 1-78 (78)
146 KOG4439 RNA polymerase II tran 99.7 7.8E-17 1.7E-21 149.2 17.8 103 280-382 747-852 (901)
147 cd00046 DEXDc DEAD-like helica 99.7 1.1E-16 2.4E-21 127.8 16.7 144 75-223 1-144 (144)
148 COG1199 DinG Rad3-related DNA 99.7 3.5E-15 7.6E-20 148.8 25.1 129 270-402 471-634 (654)
149 PRK14873 primosome assembly pr 99.7 4.4E-16 9.5E-21 151.2 17.9 281 79-384 165-537 (665)
150 KOG0391 SNF2 family DNA-depend 99.7 1.7E-15 3.6E-20 147.1 19.4 126 269-394 1264-1396(1958)
151 PRK11747 dinG ATP-dependent DN 99.7 6.9E-14 1.5E-18 138.5 31.5 118 279-400 534-689 (697)
152 PRK12901 secA preprotein trans 99.7 3.5E-15 7.7E-20 146.0 21.3 129 259-389 606-744 (1112)
153 KOG0386 Chromatin remodeling c 99.7 2.4E-16 5.1E-21 151.4 12.4 341 58-408 393-861 (1157)
154 KOG0388 SNF2 family DNA-depend 99.7 1.5E-15 3.2E-20 140.9 16.9 114 267-380 1030-1146(1185)
155 TIGR02562 cas3_yersinia CRISPR 99.7 8.6E-15 1.9E-19 144.0 20.7 310 59-375 408-881 (1110)
156 TIGR00604 rad3 DNA repair heli 99.7 1E-13 2.2E-18 138.5 28.1 73 57-129 8-84 (705)
157 PF02399 Herpes_ori_bp: Origin 99.6 3.4E-14 7.4E-19 136.4 21.7 289 76-386 51-388 (824)
158 COG0610 Type I site-specific r 99.6 6.9E-14 1.5E-18 142.0 24.7 297 75-384 274-651 (962)
159 smart00490 HELICc helicase sup 99.6 2.4E-15 5.3E-20 107.6 8.6 81 294-374 2-82 (82)
160 KOG1015 Transcription regulato 99.5 8.5E-13 1.8E-17 126.4 16.9 105 278-382 1141-1271(1567)
161 COG0553 HepA Superfamily II DN 99.5 3.7E-12 8.1E-17 132.3 20.1 316 58-381 337-815 (866)
162 COG0653 SecA Preprotein transl 99.4 4.2E-12 9.2E-17 123.0 17.7 315 61-387 80-546 (822)
163 PF06862 DUF1253: Protein of u 99.4 6.2E-10 1.3E-14 102.0 27.4 231 158-390 132-419 (442)
164 PF07652 Flavi_DEAD: Flaviviru 99.4 1.9E-12 4.1E-17 98.5 9.3 137 73-227 3-140 (148)
165 PF00176 SNF2_N: SNF2 family N 99.4 2.5E-12 5.5E-17 116.3 11.3 152 63-226 1-175 (299)
166 PRK15483 type III restriction- 99.2 4.4E-09 9.6E-14 104.7 23.1 75 329-403 501-584 (986)
167 smart00488 DEXDc2 DEAD-like he 99.1 5.9E-10 1.3E-14 98.9 12.5 70 59-128 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.1 5.9E-10 1.3E-14 98.9 12.5 70 59-128 8-84 (289)
169 KOG1016 Predicted DNA helicase 99.1 1.2E-08 2.7E-13 96.6 20.6 106 279-384 719-845 (1387)
170 KOG2340 Uncharacterized conser 99.1 8.7E-09 1.9E-13 93.7 17.7 331 56-388 213-670 (698)
171 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.1E-08 2.4E-13 88.2 14.7 127 59-194 77-210 (266)
172 KOG0921 Dosage compensation co 99.0 3.4E-09 7.4E-14 101.9 10.8 309 65-384 384-772 (1282)
173 KOG0952 DNA/RNA helicase MER3/ 98.9 2.6E-10 5.6E-15 111.3 1.8 258 59-330 927-1206(1230)
174 COG3587 Restriction endonuclea 98.8 1E-06 2.3E-11 85.1 20.9 76 328-403 482-569 (985)
175 PF13872 AAA_34: P-loop contai 98.7 1.2E-07 2.6E-12 82.1 10.9 171 43-229 27-226 (303)
176 PF13307 Helicase_C_2: Helicas 98.7 6.6E-08 1.4E-12 78.7 7.7 111 273-386 4-150 (167)
177 KOG1001 Helicase-like transcri 98.6 1.5E-07 3.2E-12 91.9 9.9 102 280-381 540-643 (674)
178 TIGR00596 rad1 DNA repair prot 98.6 1.3E-06 2.8E-11 87.4 14.2 67 158-225 8-74 (814)
179 PF13604 AAA_30: AAA domain; P 98.5 4.8E-07 1E-11 75.7 9.1 123 59-222 1-130 (196)
180 KOG1802 RNA helicase nonsense 98.5 3.2E-07 7E-12 86.0 8.5 85 51-142 402-486 (935)
181 PF12340 DUF3638: Protein of u 98.5 1.1E-06 2.4E-11 73.5 10.6 153 38-195 4-186 (229)
182 PF02562 PhoH: PhoH-like prote 98.5 3.2E-07 7E-12 76.0 7.3 144 57-223 2-156 (205)
183 COG3421 Uncharacterized protei 98.5 6.2E-07 1.3E-11 83.3 9.2 152 79-234 2-175 (812)
184 KOG1803 DNA helicase [Replicat 98.3 3.9E-06 8.4E-11 78.5 9.5 64 59-125 185-249 (649)
185 PRK10536 hypothetical protein; 98.3 2.2E-05 4.8E-10 67.1 12.9 145 56-221 56-211 (262)
186 PF09848 DUF2075: Uncharacteri 98.2 1.4E-05 3E-10 73.7 10.2 109 76-209 3-117 (352)
187 PF13086 AAA_11: AAA domain; P 98.1 8.7E-06 1.9E-10 70.6 7.8 69 59-127 1-75 (236)
188 PF13245 AAA_19: Part of AAA d 98.1 1E-05 2.2E-10 55.8 6.3 51 74-125 10-62 (76)
189 TIGR01448 recD_rel helicase, p 98.1 3.6E-05 7.8E-10 77.2 12.6 127 57-222 321-452 (720)
190 smart00492 HELICc3 helicase su 98.1 3.6E-05 7.9E-10 60.3 9.7 77 308-384 26-136 (141)
191 TIGR01447 recD exodeoxyribonuc 98.1 3.8E-05 8.2E-10 74.9 11.7 140 62-222 148-295 (586)
192 PRK10875 recD exonuclease V su 98.0 4.4E-05 9.6E-10 74.6 11.3 140 61-222 154-301 (615)
193 smart00491 HELICc2 helicase su 98.0 3.5E-05 7.6E-10 60.5 8.6 94 292-385 4-138 (142)
194 KOG1132 Helicase of the DEAD s 97.8 0.00013 2.7E-09 71.5 10.1 70 59-128 21-133 (945)
195 PF00580 UvrD-helicase: UvrD/R 97.8 4.6E-05 1E-09 69.3 6.8 122 60-191 1-125 (315)
196 KOG0989 Replication factor C, 97.8 6.8E-05 1.5E-09 64.7 6.4 47 176-224 124-170 (346)
197 COG1875 NYN ribonuclease and A 97.8 7.3E-05 1.6E-09 66.1 6.6 147 56-221 225-386 (436)
198 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00054 1.2E-08 69.2 13.8 61 58-121 351-412 (744)
199 KOG0298 DEAD box-containing he 97.6 0.00013 2.9E-09 74.0 7.0 144 74-225 374-552 (1394)
200 PRK13889 conjugal transfer rel 97.6 0.00096 2.1E-08 68.6 13.0 124 58-222 345-470 (988)
201 TIGR00376 DNA helicase, putati 97.6 0.00026 5.7E-09 70.1 8.5 67 58-127 156-223 (637)
202 PRK13826 Dtr system oriT relax 97.6 0.0016 3.5E-08 67.5 14.2 138 43-222 366-505 (1102)
203 PRK08181 transposase; Validate 97.5 0.0011 2.3E-08 58.2 10.8 46 72-121 104-149 (269)
204 KOG1805 DNA replication helica 97.5 0.00035 7.5E-09 69.2 8.2 136 44-195 658-810 (1100)
205 PRK04296 thymidine kinase; Pro 97.4 0.00022 4.8E-09 59.4 5.2 35 76-113 4-38 (190)
206 PRK06526 transposase; Provisio 97.4 0.0013 2.8E-08 57.3 9.9 29 71-99 95-123 (254)
207 COG1419 FlhF Flagellar GTP-bin 97.4 0.0014 3.1E-08 59.5 10.3 132 74-234 203-335 (407)
208 PF13401 AAA_22: AAA domain; P 97.4 0.00041 9E-09 54.0 6.0 23 74-96 4-26 (131)
209 PRK12723 flagellar biosynthesi 97.4 0.001 2.2E-08 61.3 9.3 130 75-234 175-309 (388)
210 PRK14974 cell division protein 97.4 0.0011 2.4E-08 60.0 8.9 130 77-235 143-276 (336)
211 PF13871 Helicase_C_4: Helicas 97.3 0.00053 1.2E-08 59.6 6.4 67 320-386 52-127 (278)
212 cd00009 AAA The AAA+ (ATPases 97.3 0.0038 8.3E-08 49.3 10.4 25 74-99 19-43 (151)
213 KOG1131 RNA polymerase II tran 97.2 0.00084 1.8E-08 62.1 6.8 72 57-128 14-90 (755)
214 PRK05642 DNA replication initi 97.2 0.00095 2E-08 57.6 6.8 45 181-225 97-141 (234)
215 PRK11889 flhF flagellar biosyn 97.2 0.0064 1.4E-07 55.6 11.9 130 75-235 242-375 (436)
216 KOG1513 Nuclear helicase MOP-3 97.2 0.0004 8.7E-09 67.2 4.2 163 57-224 262-455 (1300)
217 smart00382 AAA ATPases associa 97.2 0.0015 3.2E-08 51.3 7.0 41 74-117 2-42 (148)
218 PRK10919 ATP-dependent DNA hel 97.1 0.00076 1.6E-08 67.6 6.2 70 59-130 2-72 (672)
219 TIGR02760 TraI_TIGR conjugativ 97.1 0.049 1.1E-06 61.1 20.0 236 59-329 429-686 (1960)
220 PRK14722 flhF flagellar biosyn 97.1 0.0023 5E-08 58.6 8.0 132 74-234 137-269 (374)
221 PF14617 CMS1: U3-containing 9 97.1 0.0021 4.5E-08 55.2 7.1 87 103-191 124-211 (252)
222 PRK11054 helD DNA helicase IV; 97.0 0.0024 5.2E-08 63.8 8.4 80 57-139 194-274 (684)
223 PRK08084 DNA replication initi 97.0 0.002 4.2E-08 55.8 6.9 43 182-224 98-141 (235)
224 PRK06893 DNA replication initi 97.0 0.0021 4.7E-08 55.3 7.0 46 180-225 90-136 (229)
225 PF00448 SRP54: SRP54-type pro 97.0 0.0073 1.6E-07 50.4 9.8 128 77-233 4-135 (196)
226 PHA02533 17 large terminase pr 96.9 0.0063 1.4E-07 58.9 9.8 74 59-133 59-132 (534)
227 TIGR01075 uvrD DNA helicase II 96.9 0.0018 3.9E-08 65.8 6.2 71 58-130 3-74 (715)
228 PRK05703 flhF flagellar biosyn 96.8 0.019 4.1E-07 54.1 12.2 129 74-234 221-354 (424)
229 PRK08727 hypothetical protein; 96.8 0.0054 1.2E-07 53.0 7.9 47 180-226 92-139 (233)
230 PRK11773 uvrD DNA-dependent he 96.8 0.0023 5E-08 65.0 6.5 70 59-130 9-79 (721)
231 PF05127 Helicase_RecD: Helica 96.8 0.002 4.4E-08 52.2 4.8 125 78-225 1-125 (177)
232 PRK14956 DNA polymerase III su 96.8 0.0057 1.2E-07 57.7 8.3 22 76-97 42-63 (484)
233 PF03354 Terminase_1: Phage Te 96.8 0.01 2.2E-07 57.2 10.0 148 62-220 1-160 (477)
234 PRK12377 putative replication 96.7 0.01 2.2E-07 51.4 8.9 43 75-121 102-144 (248)
235 PF05970 PIF1: PIF1-like helic 96.7 0.0039 8.5E-08 57.7 6.8 58 59-119 1-64 (364)
236 PRK14712 conjugal transfer nic 96.7 0.011 2.4E-07 63.7 10.7 62 59-121 835-900 (1623)
237 PF13177 DNA_pol3_delta2: DNA 96.7 0.0055 1.2E-07 49.5 6.7 43 180-224 101-143 (162)
238 KOG1133 Helicase of the DEAD s 96.7 0.015 3.1E-07 56.1 10.3 108 274-385 625-779 (821)
239 PRK07952 DNA replication prote 96.7 0.017 3.7E-07 49.9 10.0 34 75-111 100-133 (244)
240 TIGR01074 rep ATP-dependent DN 96.7 0.0057 1.2E-07 61.8 7.9 70 59-130 1-71 (664)
241 KOG0383 Predicted helicase [Ge 96.6 0.00025 5.4E-09 69.0 -1.9 74 268-342 618-696 (696)
242 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0086 1.9E-07 51.5 7.8 20 74-93 38-57 (226)
243 PRK00149 dnaA chromosomal repl 96.6 0.0086 1.9E-07 57.3 8.4 45 75-121 149-193 (450)
244 PRK13709 conjugal transfer nic 96.6 0.019 4.2E-07 62.7 11.6 62 58-121 966-1032(1747)
245 PRK06921 hypothetical protein; 96.6 0.018 3.9E-07 50.6 9.5 43 74-119 117-159 (266)
246 PRK14087 dnaA chromosomal repl 96.6 0.0056 1.2E-07 58.2 6.7 47 75-123 142-188 (450)
247 PF00308 Bac_DnaA: Bacterial d 96.6 0.0049 1.1E-07 52.6 5.7 48 180-227 96-144 (219)
248 PTZ00112 origin recognition co 96.6 0.063 1.4E-06 54.2 13.7 33 61-93 760-800 (1164)
249 PLN03025 replication factor C 96.5 0.029 6.2E-07 51.1 10.6 38 181-220 99-136 (319)
250 PRK07003 DNA polymerase III su 96.5 0.015 3.2E-07 57.7 9.0 39 180-220 118-156 (830)
251 PRK06835 DNA replication prote 96.5 0.014 3E-07 52.9 8.3 44 74-121 183-226 (329)
252 PRK12402 replication factor C 96.5 0.019 4E-07 52.8 9.4 40 180-221 124-163 (337)
253 TIGR00362 DnaA chromosomal rep 96.5 0.01 2.2E-07 56.0 7.8 37 75-112 137-173 (405)
254 PF05876 Terminase_GpA: Phage 96.4 0.02 4.4E-07 56.0 9.7 127 59-195 16-148 (557)
255 PRK08116 hypothetical protein; 96.4 0.026 5.6E-07 49.8 9.4 43 75-121 115-157 (268)
256 PRK06731 flhF flagellar biosyn 96.4 0.052 1.1E-06 47.7 11.1 130 75-235 76-209 (270)
257 PRK05707 DNA polymerase III su 96.4 0.016 3.4E-07 52.7 8.2 41 59-99 3-47 (328)
258 cd01120 RecA-like_NTPases RecA 96.4 0.056 1.2E-06 43.5 10.8 38 77-117 2-39 (165)
259 PRK12323 DNA polymerase III su 96.3 0.023 5E-07 55.5 9.3 41 180-222 123-163 (700)
260 TIGR01073 pcrA ATP-dependent D 96.3 0.0072 1.6E-07 61.6 6.2 71 58-130 3-74 (726)
261 PRK14960 DNA polymerase III su 96.3 0.015 3.3E-07 56.8 8.0 39 180-220 117-155 (702)
262 PRK14949 DNA polymerase III su 96.3 0.028 6E-07 56.9 9.9 38 180-219 118-155 (944)
263 PRK14958 DNA polymerase III su 96.3 0.031 6.6E-07 54.1 10.0 39 180-220 118-156 (509)
264 PRK14086 dnaA chromosomal repl 96.3 0.042 9.1E-07 53.6 10.8 47 180-226 376-423 (617)
265 PRK14964 DNA polymerase III su 96.3 0.03 6.5E-07 53.5 9.6 40 179-220 114-153 (491)
266 PRK07764 DNA polymerase III su 96.2 0.031 6.7E-07 57.0 10.0 39 180-220 119-157 (824)
267 PRK00771 signal recognition pa 96.2 0.063 1.4E-06 50.6 11.4 52 183-234 177-228 (437)
268 PRK14088 dnaA chromosomal repl 96.2 0.035 7.5E-07 52.8 9.7 38 75-113 131-168 (440)
269 COG2256 MGS1 ATPase related to 96.2 0.026 5.7E-07 51.1 8.3 18 75-92 49-66 (436)
270 TIGR02785 addA_Gpos recombinat 96.2 0.012 2.6E-07 63.3 7.1 124 59-192 1-126 (1232)
271 KOG2028 ATPase related to the 96.1 0.026 5.6E-07 50.4 7.6 46 75-123 163-208 (554)
272 PRK08903 DnaA regulatory inact 96.1 0.031 6.8E-07 48.1 8.2 19 74-92 42-60 (227)
273 PRK09183 transposase/IS protei 96.1 0.03 6.6E-07 49.1 8.0 24 71-94 99-122 (259)
274 cd01122 GP4d_helicase GP4d_hel 96.1 0.026 5.6E-07 50.1 7.8 78 47-127 3-80 (271)
275 PF00004 AAA: ATPase family as 96.0 0.13 2.8E-06 39.7 10.9 15 77-91 1-15 (132)
276 PRK14951 DNA polymerase III su 96.0 0.024 5.1E-07 55.8 7.7 39 180-220 123-161 (618)
277 TIGR03015 pepcterm_ATPase puta 96.0 0.072 1.6E-06 47.2 10.4 40 60-100 24-68 (269)
278 PF13173 AAA_14: AAA domain 96.0 0.098 2.1E-06 40.3 9.9 38 181-223 61-98 (128)
279 TIGR01547 phage_term_2 phage t 96.0 0.026 5.6E-07 53.2 7.9 146 77-234 4-151 (396)
280 PRK13833 conjugal transfer pro 96.0 0.02 4.4E-07 51.5 6.7 57 60-117 129-186 (323)
281 TIGR01425 SRP54_euk signal rec 96.0 0.052 1.1E-06 50.8 9.6 19 77-95 103-121 (429)
282 COG4626 Phage terminase-like p 96.0 0.06 1.3E-06 51.2 9.9 145 59-221 61-223 (546)
283 COG4962 CpaF Flp pilus assembl 96.0 0.039 8.5E-07 49.2 8.1 59 56-118 154-213 (355)
284 KOG0733 Nuclear AAA ATPase (VC 95.9 0.035 7.5E-07 53.1 8.1 61 29-91 500-562 (802)
285 PRK14961 DNA polymerase III su 95.9 0.032 6.8E-07 51.8 8.0 39 180-220 118-156 (363)
286 PRK08769 DNA polymerase III su 95.9 0.052 1.1E-06 48.9 9.0 143 58-222 3-152 (319)
287 TIGR02881 spore_V_K stage V sp 95.9 0.042 9.2E-07 48.4 8.4 19 75-93 43-61 (261)
288 PRK12727 flagellar biosynthesi 95.9 0.19 4.1E-06 48.2 12.9 22 74-95 350-371 (559)
289 PRK14962 DNA polymerase III su 95.9 0.035 7.6E-07 53.1 8.3 19 76-94 38-56 (472)
290 PRK14952 DNA polymerase III su 95.9 0.042 9E-07 53.8 8.9 39 180-220 117-155 (584)
291 TIGR02760 TraI_TIGR conjugativ 95.9 0.042 9.1E-07 61.6 9.8 62 58-121 1018-1084(1960)
292 PRK09111 DNA polymerase III su 95.8 0.034 7.3E-07 54.7 8.0 40 179-220 130-169 (598)
293 PRK10917 ATP-dependent DNA hel 95.8 0.049 1.1E-06 55.0 9.4 77 278-354 309-390 (681)
294 PRK14721 flhF flagellar biosyn 95.8 0.091 2E-06 49.1 10.3 132 74-234 191-323 (420)
295 KOG0739 AAA+-type ATPase [Post 95.8 0.12 2.6E-06 45.0 10.1 111 69-227 156-281 (439)
296 COG0470 HolB ATPase involved i 95.8 0.044 9.5E-07 50.0 8.3 40 180-221 108-147 (325)
297 cd01124 KaiC KaiC is a circadi 95.8 0.073 1.6E-06 44.1 8.9 48 77-128 2-49 (187)
298 PRK08691 DNA polymerase III su 95.8 0.042 9E-07 54.3 8.2 39 180-220 118-156 (709)
299 PHA02544 44 clamp loader, smal 95.8 0.14 3.1E-06 46.5 11.5 39 181-220 100-138 (316)
300 PF05621 TniB: Bacterial TniB 95.8 0.044 9.4E-07 48.3 7.5 120 75-222 62-188 (302)
301 PRK14963 DNA polymerase III su 95.7 0.057 1.2E-06 52.1 8.9 19 77-95 39-57 (504)
302 PRK06964 DNA polymerase III su 95.7 0.086 1.9E-06 48.0 9.5 40 60-99 2-46 (342)
303 PRK06645 DNA polymerase III su 95.7 0.042 9.1E-07 52.9 7.8 23 75-97 44-66 (507)
304 PRK12422 chromosomal replicati 95.7 0.059 1.3E-06 51.2 8.8 49 180-228 201-250 (445)
305 PRK07994 DNA polymerase III su 95.7 0.038 8.2E-07 54.5 7.6 38 180-219 118-155 (647)
306 PRK14873 primosome assembly pr 95.7 0.16 3.5E-06 50.7 12.1 126 265-393 172-309 (665)
307 PRK13894 conjugal transfer ATP 95.7 0.03 6.5E-07 50.6 6.4 66 49-117 124-190 (319)
308 COG0593 DnaA ATPase involved i 95.6 0.053 1.2E-06 50.1 8.0 48 181-228 175-223 (408)
309 COG1444 Predicted P-loop ATPas 95.6 0.16 3.4E-06 50.6 11.6 145 57-225 212-358 (758)
310 COG2805 PilT Tfp pilus assembl 95.6 0.024 5.1E-07 49.4 5.3 54 33-105 102-155 (353)
311 PRK14723 flhF flagellar biosyn 95.6 0.061 1.3E-06 53.9 8.9 120 76-225 187-307 (767)
312 cd00984 DnaB_C DnaB helicase C 95.6 0.051 1.1E-06 47.3 7.7 40 72-113 11-50 (242)
313 COG3973 Superfamily I DNA and 95.6 0.066 1.4E-06 51.2 8.6 85 45-129 191-284 (747)
314 PRK14965 DNA polymerase III su 95.6 0.064 1.4E-06 52.9 9.0 40 179-220 117-156 (576)
315 TIGR00064 ftsY signal recognit 95.6 0.14 3.1E-06 45.2 10.3 55 180-234 153-213 (272)
316 TIGR02782 TrbB_P P-type conjug 95.6 0.03 6.6E-07 50.2 6.2 57 60-117 117-174 (299)
317 PRK07471 DNA polymerase III su 95.6 0.085 1.8E-06 48.7 9.1 43 179-223 139-181 (365)
318 PHA03333 putative ATPase subun 95.6 0.25 5.4E-06 48.6 12.3 57 72-130 185-241 (752)
319 CHL00181 cbbX CbbX; Provisiona 95.5 0.051 1.1E-06 48.4 7.4 21 74-94 59-79 (287)
320 PRK08699 DNA polymerase III su 95.5 0.097 2.1E-06 47.5 9.2 40 60-99 2-46 (325)
321 PRK14957 DNA polymerase III su 95.5 0.065 1.4E-06 52.0 8.5 39 180-220 118-156 (546)
322 COG2909 MalT ATP-dependent tra 95.5 0.084 1.8E-06 52.6 9.2 43 181-224 129-171 (894)
323 PRK12726 flagellar biosynthesi 95.5 0.071 1.5E-06 48.8 8.2 23 74-96 206-228 (407)
324 COG3972 Superfamily I DNA and 95.5 0.12 2.5E-06 48.3 9.4 81 46-129 150-230 (660)
325 PRK12724 flagellar biosynthesi 95.4 0.12 2.5E-06 48.1 9.4 55 180-234 298-356 (432)
326 PRK05896 DNA polymerase III su 95.4 0.061 1.3E-06 52.4 8.0 39 180-220 118-156 (605)
327 PRK14959 DNA polymerase III su 95.4 0.063 1.4E-06 52.6 8.0 25 75-99 39-63 (624)
328 KOG0991 Replication factor C, 95.3 0.026 5.5E-07 47.2 4.3 37 180-218 112-148 (333)
329 PRK06090 DNA polymerase III su 95.3 0.13 2.8E-06 46.4 9.1 137 59-223 3-148 (319)
330 TIGR03499 FlhF flagellar biosy 95.3 0.087 1.9E-06 46.9 7.9 22 76-97 196-217 (282)
331 PRK14969 DNA polymerase III su 95.3 0.07 1.5E-06 51.9 7.9 40 179-220 117-156 (527)
332 PHA03368 DNA packaging termina 95.2 0.16 3.5E-06 49.7 10.0 134 75-223 255-390 (738)
333 COG1435 Tdk Thymidine kinase [ 95.2 0.19 4.1E-06 41.1 8.9 103 76-209 6-108 (201)
334 PRK06871 DNA polymerase III su 95.2 0.12 2.6E-06 46.8 8.7 133 60-222 3-146 (325)
335 COG2804 PulE Type II secretory 95.2 0.035 7.6E-07 52.2 5.4 43 60-103 242-286 (500)
336 TIGR00678 holB DNA polymerase 95.2 0.068 1.5E-06 44.5 6.7 40 179-220 94-133 (188)
337 PRK07993 DNA polymerase III su 95.2 0.07 1.5E-06 48.6 7.3 138 59-222 2-147 (334)
338 PRK14955 DNA polymerase III su 95.2 0.13 2.8E-06 48.4 9.2 40 179-220 125-164 (397)
339 PRK10867 signal recognition pa 95.2 0.19 4E-06 47.4 10.1 22 77-98 103-124 (433)
340 PRK05580 primosome assembly pr 95.2 0.12 2.7E-06 52.0 9.5 76 279-355 190-266 (679)
341 PRK08451 DNA polymerase III su 95.2 0.097 2.1E-06 50.6 8.4 40 179-220 115-154 (535)
342 PRK05563 DNA polymerase III su 95.1 0.09 1.9E-06 51.6 8.3 23 75-97 39-61 (559)
343 PRK00411 cdc6 cell division co 95.1 0.12 2.6E-06 48.7 8.9 24 75-99 56-79 (394)
344 TIGR00643 recG ATP-dependent D 95.1 0.098 2.1E-06 52.4 8.6 77 278-354 283-364 (630)
345 PRK14954 DNA polymerase III su 95.1 0.065 1.4E-06 52.9 7.1 40 179-220 125-164 (620)
346 TIGR00595 priA primosomal prot 95.1 0.12 2.6E-06 50.1 8.8 77 278-355 24-101 (505)
347 PHA00729 NTP-binding motif con 95.0 0.085 1.8E-06 44.7 6.7 17 76-92 19-35 (226)
348 PRK00440 rfc replication facto 95.0 0.4 8.7E-06 43.6 11.8 38 181-220 102-139 (319)
349 PRK11331 5-methylcytosine-spec 95.0 0.13 2.7E-06 48.4 8.2 33 60-92 180-212 (459)
350 PRK08533 flagellar accessory p 94.9 0.29 6.2E-06 42.1 9.9 53 72-128 22-74 (230)
351 PRK11823 DNA repair protein Ra 94.9 0.073 1.6E-06 50.7 6.8 51 74-128 80-130 (446)
352 PF05707 Zot: Zonular occluden 94.9 0.062 1.3E-06 44.9 5.6 53 181-234 79-136 (193)
353 KOG1133 Helicase of the DEAD s 94.9 0.027 5.8E-07 54.4 3.6 42 58-99 14-59 (821)
354 KOG0742 AAA+-type ATPase [Post 94.9 0.074 1.6E-06 48.4 6.1 108 75-230 385-500 (630)
355 TIGR03600 phage_DnaB phage rep 94.8 0.18 3.9E-06 47.9 9.2 117 71-195 191-319 (421)
356 PTZ00293 thymidine kinase; Pro 94.8 0.2 4.3E-06 42.0 8.2 39 74-115 4-42 (211)
357 COG1198 PriA Primosomal protei 94.8 0.096 2.1E-06 52.3 7.3 92 261-353 225-319 (730)
358 PRK13341 recombination factor 94.8 0.23 4.9E-06 50.2 10.1 18 75-92 53-70 (725)
359 PRK04195 replication factor C 94.7 0.22 4.7E-06 48.2 9.7 19 74-92 39-57 (482)
360 PRK09112 DNA polymerase III su 94.7 0.16 3.5E-06 46.6 8.3 41 180-222 140-180 (351)
361 PRK06995 flhF flagellar biosyn 94.7 0.23 5E-06 47.4 9.4 24 75-98 257-280 (484)
362 PRK13851 type IV secretion sys 94.7 0.057 1.2E-06 49.2 5.3 43 71-117 159-201 (344)
363 TIGR02928 orc1/cdc6 family rep 94.7 0.13 2.8E-06 47.9 7.8 18 75-92 41-58 (365)
364 COG0552 FtsY Signal recognitio 94.6 0.72 1.6E-05 41.2 11.6 129 77-234 142-280 (340)
365 PRK14948 DNA polymerase III su 94.6 0.12 2.7E-06 51.2 7.8 24 75-98 39-62 (620)
366 COG1110 Reverse gyrase [DNA re 94.6 0.14 3.1E-06 52.0 8.1 118 222-353 82-209 (1187)
367 cd01121 Sms Sms (bacterial rad 94.6 0.11 2.3E-06 48.1 6.9 51 74-128 82-132 (372)
368 PF01695 IstB_IS21: IstB-like 94.6 0.055 1.2E-06 44.4 4.5 46 72-121 45-90 (178)
369 PRK10416 signal recognition pa 94.6 0.67 1.4E-05 42.0 11.7 55 180-234 195-255 (318)
370 KOG0701 dsRNA-specific nucleas 94.6 0.027 5.8E-07 60.3 3.1 93 281-373 294-398 (1606)
371 TIGR02397 dnaX_nterm DNA polym 94.5 0.16 3.5E-06 47.1 8.1 19 75-93 37-55 (355)
372 TIGR03689 pup_AAA proteasome A 94.5 0.31 6.7E-06 47.0 9.7 18 74-91 216-233 (512)
373 PRK13342 recombination factor 94.4 0.35 7.6E-06 45.8 10.1 18 75-92 37-54 (413)
374 PF05729 NACHT: NACHT domain 94.4 0.27 5.8E-06 39.6 8.3 24 77-100 3-26 (166)
375 cd03115 SRP The signal recogni 94.4 1.2 2.5E-05 36.4 12.1 21 77-97 3-23 (173)
376 TIGR02525 plasmid_TraJ plasmid 94.4 0.087 1.9E-06 48.6 5.8 37 74-111 149-185 (372)
377 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.42 9.1E-06 44.1 10.1 45 180-226 126-171 (362)
378 PRK14950 DNA polymerase III su 94.3 0.21 4.6E-06 49.5 8.6 21 75-95 39-59 (585)
379 COG1484 DnaC DNA replication p 94.3 0.13 2.9E-06 44.9 6.4 48 73-124 104-151 (254)
380 PF01637 Arch_ATPase: Archaeal 94.2 0.079 1.7E-06 45.6 5.0 25 74-99 20-44 (234)
381 TIGR00580 mfd transcription-re 94.2 0.24 5.3E-06 51.5 9.0 76 278-353 499-579 (926)
382 PRK06647 DNA polymerase III su 94.1 0.19 4.1E-06 49.3 7.7 21 76-96 40-60 (563)
383 PRK08506 replicative DNA helic 94.1 0.25 5.4E-06 47.5 8.4 113 74-195 192-316 (472)
384 PRK06067 flagellar accessory p 94.1 0.21 4.5E-06 43.2 7.2 51 74-128 25-75 (234)
385 TIGR01243 CDC48 AAA family ATP 94.0 0.3 6.5E-06 50.0 9.3 55 35-91 448-504 (733)
386 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.14 2.9E-06 47.2 6.1 27 73-100 133-159 (358)
387 TIGR00767 rho transcription te 93.9 0.17 3.6E-06 46.8 6.5 29 73-102 167-195 (415)
388 PRK08939 primosomal protein Dn 93.9 0.28 6.1E-06 44.1 7.9 20 74-93 156-175 (306)
389 COG1200 RecG RecG-like helicas 93.9 0.35 7.6E-06 47.3 8.8 76 278-353 310-390 (677)
390 PRK14953 DNA polymerase III su 93.9 0.4 8.8E-06 46.2 9.3 19 77-95 41-59 (486)
391 PRK07940 DNA polymerase III su 93.8 0.39 8.4E-06 44.9 8.9 42 180-224 116-157 (394)
392 COG0210 UvrD Superfamily I DNA 93.8 0.13 2.7E-06 52.1 6.2 70 59-130 2-72 (655)
393 PF03796 DnaB_C: DnaB-like hel 93.8 0.2 4.3E-06 44.1 6.8 114 74-195 19-144 (259)
394 TIGR02639 ClpA ATP-dependent C 93.8 0.92 2E-05 46.4 12.2 20 74-93 203-222 (731)
395 TIGR00959 ffh signal recogniti 93.7 0.6 1.3E-05 44.1 10.0 21 77-97 102-122 (428)
396 cd01130 VirB11-like_ATPase Typ 93.7 0.16 3.4E-06 42.2 5.6 41 59-100 9-50 (186)
397 TIGR00665 DnaB replicative DNA 93.7 0.48 1E-05 45.2 9.6 113 74-195 195-319 (434)
398 PRK13900 type IV secretion sys 93.7 0.094 2E-06 47.7 4.5 41 72-116 158-198 (332)
399 PRK07133 DNA polymerase III su 93.7 0.35 7.5E-06 48.5 8.6 40 179-220 116-155 (725)
400 TIGR02868 CydC thiol reductant 93.6 0.55 1.2E-05 46.2 10.1 30 72-103 359-388 (529)
401 PHA03372 DNA packaging termina 93.5 1.2 2.5E-05 43.4 11.4 128 75-223 203-337 (668)
402 PF03237 Terminase_6: Terminas 93.5 1.4 3E-05 41.0 12.3 106 78-195 1-111 (384)
403 PRK06305 DNA polymerase III su 93.5 0.36 7.7E-06 46.1 8.2 39 180-220 120-158 (451)
404 KOG1132 Helicase of the DEAD s 93.5 1.8 4E-05 43.6 12.9 106 280-386 562-722 (945)
405 COG1132 MdlB ABC-type multidru 93.4 0.56 1.2E-05 46.6 9.9 37 71-110 352-388 (567)
406 cd00561 CobA_CobO_BtuR ATP:cor 93.4 1.2 2.5E-05 35.7 9.7 136 77-232 5-147 (159)
407 COG0378 HypB Ni2+-binding GTPa 93.4 0.71 1.5E-05 37.8 8.5 39 179-226 94-132 (202)
408 PF01443 Viral_helicase1: Vira 93.4 0.046 1E-06 47.2 1.9 14 77-90 1-14 (234)
409 PRK05973 replicative DNA helic 93.3 0.18 4E-06 43.2 5.4 58 67-128 57-114 (237)
410 COG1702 PhoH Phosphate starvat 93.3 0.041 8.9E-07 48.9 1.4 56 57-113 126-181 (348)
411 TIGR01241 FtsH_fam ATP-depende 93.3 0.31 6.8E-06 47.3 7.6 54 35-91 50-105 (495)
412 PRK10689 transcription-repair 93.2 0.33 7.3E-06 51.8 8.2 76 278-353 648-728 (1147)
413 PRK14971 DNA polymerase III su 93.2 0.3 6.5E-06 48.5 7.4 40 179-220 119-158 (614)
414 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.12 2.6E-06 44.7 4.2 51 74-128 21-71 (237)
415 PRK05986 cob(I)alamin adenolsy 93.1 1.3 2.9E-05 36.5 9.8 147 72-233 20-168 (191)
416 cd01128 rho_factor Transcripti 93.1 0.54 1.2E-05 40.9 8.0 30 71-101 13-42 (249)
417 KOG0733 Nuclear AAA ATPase (VC 93.0 0.71 1.5E-05 44.6 9.0 53 36-91 186-240 (802)
418 COG1474 CDC6 Cdc6-related prot 92.9 1.4 3E-05 40.8 10.9 26 75-101 43-68 (366)
419 COG1219 ClpX ATP-dependent pro 92.9 0.074 1.6E-06 46.8 2.5 18 74-91 97-114 (408)
420 PF06309 Torsin: Torsin; Inte 92.9 0.44 9.6E-06 36.2 6.3 52 77-128 56-112 (127)
421 cd01129 PulE-GspE PulE/GspE Th 92.9 0.25 5.5E-06 43.4 5.9 51 60-113 64-116 (264)
422 PRK08058 DNA polymerase III su 92.9 0.51 1.1E-05 43.1 8.0 41 179-221 108-148 (329)
423 PRK09376 rho transcription ter 92.9 0.37 8.1E-06 44.4 6.9 27 74-101 169-195 (416)
424 KOG0734 AAA+-type ATPase conta 92.8 0.44 9.5E-06 45.2 7.4 45 181-225 396-449 (752)
425 PRK08006 replicative DNA helic 92.8 1 2.2E-05 43.3 10.2 116 73-195 223-350 (471)
426 PRK07004 replicative DNA helic 92.8 0.48 1E-05 45.4 8.0 114 74-195 213-338 (460)
427 PHA00012 I assembly protein 92.8 0.93 2E-05 40.5 9.0 27 77-103 4-30 (361)
428 PRK11034 clpA ATP-dependent Cl 92.8 1.1 2.4E-05 45.6 10.9 20 74-93 207-226 (758)
429 PRK09165 replicative DNA helic 92.7 0.82 1.8E-05 44.3 9.5 115 74-195 217-355 (497)
430 PF06733 DEAD_2: DEAD_2; Inte 92.7 0.057 1.2E-06 44.3 1.5 38 158-195 120-159 (174)
431 cd01126 TraG_VirD4 The TraG/Tr 92.7 0.15 3.3E-06 47.8 4.5 47 76-127 1-47 (384)
432 KOG0737 AAA+-type ATPase [Post 92.7 0.53 1.2E-05 42.5 7.4 52 37-91 89-144 (386)
433 PF02572 CobA_CobO_BtuR: ATP:c 92.7 2.2 4.7E-05 34.7 10.3 141 77-232 6-148 (172)
434 COG1485 Predicted ATPase [Gene 92.6 1.1 2.5E-05 40.3 9.4 45 180-226 129-174 (367)
435 COG0630 VirB11 Type IV secreto 92.6 0.48 1E-05 42.8 7.3 55 59-117 127-182 (312)
436 PF12846 AAA_10: AAA-like doma 92.6 0.12 2.5E-06 46.6 3.5 39 74-115 1-39 (304)
437 PRK10865 protein disaggregatio 92.6 1 2.2E-05 46.9 10.5 20 74-93 199-218 (857)
438 KOG2228 Origin recognition com 92.5 3.3 7.1E-05 37.2 11.9 17 74-90 49-65 (408)
439 KOG0741 AAA+-type ATPase [Post 92.5 1.1 2.5E-05 42.5 9.6 50 41-90 493-554 (744)
440 PRK10436 hypothetical protein; 92.4 0.27 6E-06 46.8 5.8 41 60-101 202-244 (462)
441 PF00437 T2SE: Type II/IV secr 92.4 0.13 2.9E-06 45.5 3.6 43 72-117 125-167 (270)
442 TIGR02533 type_II_gspE general 92.4 0.27 5.9E-06 47.3 5.8 41 60-101 226-268 (486)
443 cd01131 PilT Pilus retraction 92.3 0.17 3.8E-06 42.4 3.8 36 77-114 4-39 (198)
444 CHL00176 ftsH cell division pr 92.2 0.54 1.2E-05 46.9 7.6 17 75-91 217-233 (638)
445 PF06745 KaiC: KaiC; InterPro 92.2 0.11 2.4E-06 44.6 2.6 51 74-128 19-70 (226)
446 TIGR02655 circ_KaiC circadian 92.1 0.86 1.9E-05 44.1 8.8 59 66-128 250-313 (484)
447 PRK06904 replicative DNA helic 92.0 0.78 1.7E-05 44.1 8.3 116 73-195 220-348 (472)
448 TIGR01243 CDC48 AAA family ATP 92.0 0.63 1.4E-05 47.7 8.2 19 73-91 211-229 (733)
449 PRK14970 DNA polymerase III su 92.0 1.1 2.5E-05 41.6 9.3 19 75-93 40-58 (367)
450 COG5008 PilU Tfp pilus assembl 92.0 1.3 2.8E-05 38.3 8.5 28 75-103 128-155 (375)
451 TIGR03819 heli_sec_ATPase heli 92.0 0.46 9.9E-06 43.5 6.5 63 49-117 154-217 (340)
452 TIGR00708 cobA cob(I)alamin ad 92.0 2 4.4E-05 34.8 9.4 137 76-233 7-150 (173)
453 PRK13764 ATPase; Provisional 91.9 0.26 5.6E-06 48.4 5.0 26 74-100 257-282 (602)
454 PRK05748 replicative DNA helic 91.9 0.66 1.4E-05 44.5 7.8 113 74-194 203-327 (448)
455 COG3267 ExeA Type II secretory 91.8 1.6 3.4E-05 37.6 8.9 32 71-103 47-79 (269)
456 CHL00195 ycf46 Ycf46; Provisio 91.8 0.59 1.3E-05 45.0 7.2 18 74-91 259-276 (489)
457 TIGR03346 chaperone_ClpB ATP-d 91.8 2.4 5.1E-05 44.4 12.1 19 74-92 194-212 (852)
458 KOG0298 DEAD box-containing he 91.8 0.29 6.4E-06 50.9 5.4 97 279-380 1221-1318(1394)
459 COG1074 RecB ATP-dependent exo 91.7 0.25 5.4E-06 53.0 5.1 56 73-128 15-72 (1139)
460 COG1197 Mfd Transcription-repa 91.7 2.2 4.9E-05 44.7 11.4 137 62-212 730-899 (1139)
461 TIGR02538 type_IV_pilB type IV 91.7 0.31 6.7E-06 48.1 5.3 40 60-100 300-341 (564)
462 PHA00350 putative assembly pro 91.7 3.8 8.3E-05 38.2 12.0 26 77-102 4-30 (399)
463 PRK05595 replicative DNA helic 91.6 0.82 1.8E-05 43.8 8.0 113 74-195 201-325 (444)
464 PRK07399 DNA polymerase III su 91.5 1.1 2.4E-05 40.5 8.4 53 166-222 110-162 (314)
465 KOG2170 ATPase of the AAA+ sup 91.5 1.1 2.3E-05 39.5 7.7 53 182-236 179-238 (344)
466 KOG0058 Peptide exporter, ABC 91.5 0.27 5.8E-06 48.4 4.6 49 72-123 492-541 (716)
467 PRK08840 replicative DNA helic 91.4 0.83 1.8E-05 43.8 7.8 121 67-194 210-342 (464)
468 COG1618 Predicted nucleotide k 91.3 0.52 1.1E-05 37.3 5.2 27 75-102 6-32 (179)
469 COG2255 RuvB Holliday junction 91.3 0.55 1.2E-05 40.9 5.8 17 75-91 53-69 (332)
470 PRK05636 replicative DNA helic 91.3 1.4 3.1E-05 42.7 9.3 113 74-195 265-389 (505)
471 CHL00095 clpC Clp protease ATP 91.3 1.6 3.6E-05 45.3 10.4 21 74-94 200-220 (821)
472 COG2109 BtuR ATP:corrinoid ade 91.3 3.3 7.1E-05 33.8 9.7 142 77-233 31-175 (198)
473 PF02534 T4SS-DNA_transf: Type 91.3 0.3 6.5E-06 47.2 4.8 49 75-128 45-93 (469)
474 TIGR03878 thermo_KaiC_2 KaiC d 91.2 0.47 1E-05 41.7 5.5 37 74-113 36-72 (259)
475 PF13555 AAA_29: P-loop contai 91.2 0.18 3.9E-06 32.9 2.2 18 74-91 23-40 (62)
476 PF04665 Pox_A32: Poxvirus A32 91.1 0.29 6.3E-06 42.0 4.0 37 75-114 14-50 (241)
477 cd01393 recA_like RecA is a b 91.0 0.26 5.7E-06 42.3 3.8 42 74-115 19-63 (226)
478 TIGR01420 pilT_fam pilus retra 91.0 0.34 7.4E-06 44.5 4.7 41 74-116 122-162 (343)
479 PRK04841 transcriptional regul 90.9 1.5 3.2E-05 46.4 10.0 44 180-224 120-163 (903)
480 PRK04328 hypothetical protein; 90.8 0.34 7.3E-06 42.3 4.3 51 74-128 23-73 (249)
481 TIGR02640 gas_vesic_GvpN gas v 90.8 0.28 6E-06 43.2 3.7 28 66-93 13-40 (262)
482 TIGR00602 rad24 checkpoint pro 90.8 2.7 5.8E-05 41.9 10.7 17 75-91 111-127 (637)
483 TIGR02788 VirB11 P-type DNA tr 90.8 0.45 9.8E-06 43.0 5.2 29 71-100 141-169 (308)
484 PHA02114 hypothetical protein 90.8 0.92 2E-05 32.0 5.4 91 79-194 4-94 (127)
485 PLN00020 ribulose bisphosphate 90.7 0.28 6.1E-06 44.7 3.7 16 76-91 150-165 (413)
486 PRK13897 type IV secretion sys 90.7 0.44 9.5E-06 47.1 5.2 49 75-128 159-207 (606)
487 COG1126 GlnQ ABC-type polar am 90.6 0.36 7.9E-06 40.2 3.9 32 72-105 26-57 (240)
488 TIGR02784 addA_alphas double-s 90.6 0.56 1.2E-05 50.7 6.5 56 74-129 10-65 (1141)
489 KOG2036 Predicted P-loop ATPas 90.5 1.3 2.8E-05 43.4 7.9 62 61-124 255-323 (1011)
490 COG0464 SpoVK ATPases of the A 90.5 1.3 2.8E-05 43.2 8.4 18 74-91 276-293 (494)
491 PRK14701 reverse gyrase; Provi 90.5 1.1 2.5E-05 49.6 8.6 61 278-338 121-187 (1638)
492 KOG1807 Helicases [Replication 90.3 0.43 9.3E-06 47.1 4.7 71 56-126 375-448 (1025)
493 PHA02542 41 41 helicase; Provi 90.2 1 2.2E-05 43.2 7.2 47 75-125 191-237 (473)
494 COG1134 TagH ABC-type polysacc 90.2 1.9 4.1E-05 36.8 7.9 42 180-222 164-206 (249)
495 KOG1513 Nuclear helicase MOP-3 90.2 0.55 1.2E-05 46.6 5.3 62 323-384 851-921 (1300)
496 COG2812 DnaX DNA polymerase II 90.1 0.55 1.2E-05 45.1 5.3 40 179-222 117-156 (515)
497 PF13481 AAA_25: AAA domain; P 90.1 0.72 1.6E-05 38.3 5.6 56 73-129 31-93 (193)
498 KOG0344 ATP-dependent RNA heli 90.1 3.6 7.8E-05 39.6 10.4 99 83-192 366-467 (593)
499 KOG0730 AAA+-type ATPase [Post 90.0 1.4 3.1E-05 42.9 7.9 57 32-91 426-485 (693)
500 COG1136 SalX ABC-type antimicr 89.9 0.43 9.4E-06 40.5 3.9 32 72-105 29-60 (226)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-59 Score=427.42 Aligned_cols=375 Identities=33% Similarity=0.572 Sum_probs=338.7
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC------CCCCe
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQV 106 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~------~~~~~ 106 (418)
..++..|..++++++....+...||..|+|+|.+.|+.++.|++++..+.||||||++|+++++.++.. ...+|
T Consensus 87 ~~~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P 166 (519)
T KOG0331|consen 87 SDSSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGP 166 (519)
T ss_pred CCcchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCC
Confidence 334447999999999999999999999999999999999999999999999999999999999988765 34567
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
.+|+++||++|+.|+.+.+..+.... .++..+++||.....+...+.++ .+|+|+||.++..+++....+++++.++|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYLV 244 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEEE
Confidence 89999999999999999999999887 78899999999999999999887 69999999999999999999999999999
Q ss_pred EechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCC-cccccccceEEEEEechh
Q 014801 187 LDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKLSEL 264 (418)
Q Consensus 187 iDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (418)
+||||.+.+ ++|...++.++... +...|.++.|||+|..++.++..++.++..+.+... ....-..+.+....+...
T Consensus 245 LDEADrMld-mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 245 LDEADRMLD-MGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred eccHHhhhc-cccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 999999998 89999999999999 455589999999999999999999999988887755 334445566666667777
Q ss_pred hHHHHHHHHHhhc---CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccccc
Q 014801 265 EKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 341 (418)
Q Consensus 265 ~~~~~l~~~~~~~---~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~ 341 (418)
.+...+..++... ..+|+||||+++..|+++...|++.++++..+||+.++.+|..+++.|++|++.|||||+++++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaR 403 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAAR 403 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccc
Confidence 7777777777766 4679999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 342 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|+|+|++++||.|++|.+...|+||+||.||.|+.|.++.|+. .++......+.+.++...+.++..+.
T Consensus 404 GLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft-~~~~~~a~~l~~~l~e~~q~v~~~l~ 472 (519)
T KOG0331|consen 404 GLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFT-SDNAKLARELIKVLREAGQTVPPDLL 472 (519)
T ss_pred cCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEe-HHHHHHHHHHHHHHHHccCCCChHHH
Confidence 9999999999999999999999999999999999999999999 66666777777777777777766543
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-60 Score=402.11 Aligned_cols=365 Identities=36% Similarity=0.626 Sum_probs=340.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|.++++.+++.+++...++..|+++|++++|.++.|++++..|.||||||.+|++++++.+...+..+.+++++||+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 35799999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHh-cCCCCCCCccEEEEechhhhc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~-~~~~~~~~~~~iViDE~h~~~ 194 (418)
+|+.|+.+.++.++... ++++..+.||.+...+...+... ++|+|+||..++..+. .+.+.+..++++|+|||+.+.
T Consensus 140 ELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred HHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 99999999999998887 99999999999988877777765 6999999999999888 567789999999999999999
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHH
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 274 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (418)
+ .+|...+..++..++...|.+++|||++..+..+...-..+|..+.... .......+.+.|...+...+...|..++
T Consensus 218 d-~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~-ky~tv~~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 218 D-MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSS-KYQTVDHLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred h-hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccc-hhcchHHhhhheEeccccccchhHHHHH
Confidence 8 7999999999999999999999999999999988877777887765544 3457788899999999999999999999
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
....++.+||||++-..+..++-.|+..|+.+..+||.|++..|.-.++.|++|.++||+||++.++|+|+|.+++||.|
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 405 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
|.|.+...|++|+||.+|.|++|.++.++.. -|.+.+..++..+...+..
T Consensus 376 DiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 376 DIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999996 7778888888888877755
No 3
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.7e-58 Score=437.74 Aligned_cols=363 Identities=33% Similarity=0.584 Sum_probs=330.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.+|..+++++.+.+++.+.||.+|+|+|.++++.++.|++++++||||+|||++|+++++..+.......+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876655668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+.+.++.+....+++++..++|+.+...+...+..+ .+|+|+||+.+..++.+....+.++++||+||||.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~-~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~- 161 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD- 161 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCC-CCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC-
Confidence 9999999999988766678999999999888777766654 69999999999999998888899999999999999987
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (418)
.++...+..+....+...|++++|||++.....+...++.++..+...... ....+.+.++......+...+..++..
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~ 239 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLH 239 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999998887765543 234467777888887888889999988
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
....++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|.+...|+||+||+||.|+.|.+++++.+ ++...++.+++.++..+.
T Consensus 320 p~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 320 ARDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKLN 366 (460)
T ss_pred CCCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999984 566677888888776554
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-58 Score=442.53 Aligned_cols=376 Identities=30% Similarity=0.521 Sum_probs=328.2
Q ss_pred ccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-----CCCCe
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQV 106 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-----~~~~~ 106 (418)
.|.+..+|++.++++.+++.+.+.||.+|+++|.++++.+++|+++++++|||||||++|+++++..+.. ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3445678999999999999999999999999999999999999999999999999999999998876532 22356
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
.+||++||++|+.|+.+.++++.... ++++..++|+.....+...+..+ .+|+|+||++|..++......+.++++||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 89999999999999999999998766 78888999998877776666655 69999999999999998888899999999
Q ss_pred EechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcC-CCeEEEEcCCcccccccceEEEEEechhh
Q 014801 187 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSELE 265 (418)
Q Consensus 187 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
+||||.+.+ .++...+..+........|++++|||++.+...++..++. ++..+.+..........+.+.+..+....
T Consensus 283 iDEAd~mld-~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhh-cchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh
Confidence 999999987 6889999999999988999999999999998888888775 46665554433223344555666666667
Q ss_pred HHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCC
Q 014801 266 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 343 (418)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~ 343 (418)
+...+..++... ...++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 777777777665 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 344 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|+|++++||+|+.|.+...|+||+||+||.|+.|.+++|+. .++......+.+.+....+++|.++.
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~-~~~~~~~~~l~~~l~~~~q~vp~~l~ 508 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLT-PDKYRLARDLVKVLREAKQPVPPELE 508 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEC-cchHHHHHHHHHHHHHccCCCCHHHH
Confidence 99999999999999999999999999999999999999999 56677788888888888888887654
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.7e-58 Score=431.43 Aligned_cols=369 Identities=30% Similarity=0.495 Sum_probs=321.6
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-------CCC
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQ 105 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-------~~~ 105 (418)
++...+|+++++++++++++.+.||..|+++|.++++.++.|++++++||||||||++|+++++..+... ..+
T Consensus 4 ~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 4 HLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred cCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 3455789999999999999999999999999999999999999999999999999999999998766422 224
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEE
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHF 185 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 185 (418)
+++||++|+++|+.|+.+.+..+.... ++++..+.|+.....+...+..+ ++|+|+||+.+..++....+.+.+++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESG-VDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcccccccEE
Confidence 689999999999999999999988776 89999999998877776666544 6999999999999999888899999999
Q ss_pred EEechhhhccCCCCHHHHHHHHhhCCC--CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech
Q 014801 186 ILDECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 263 (418)
Q Consensus 186 ViDE~h~~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
|+||||.+.+ .++...+..+....+. ..+.+++|||++......+..++.++..+.+..... ....+.+.+.....
T Consensus 162 ViDEad~l~~-~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~ 239 (423)
T PRK04837 162 VLDEADRMFD-LGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSN 239 (423)
T ss_pred EEecHHHHhh-cccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCH
Confidence 9999999987 6888888888887764 355789999999988888888888887776554332 23344455555666
Q ss_pred hhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCC
Q 014801 264 LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 343 (418)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~ 343 (418)
..+...+..++......++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|+
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 67778888888777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcccc
Q 014801 344 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 406 (418)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
|+|++++||+|+.|.+...|+||+||+||.|+.|.+++|+. +++...+..+++.+...++..
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~-~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC-EEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeC-HHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999998 456667788888887776543
No 6
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-57 Score=431.53 Aligned_cols=362 Identities=33% Similarity=0.599 Sum_probs=321.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC------CCeeEEEe
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVL 111 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~------~~~~~lii 111 (418)
+|+++++++++.+.|.+.|+..|+++|.++++.++.++++++++|||+|||++|+++++..+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998864322 23479999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechh
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 191 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h 191 (418)
+||++|+.|+.+.++.+.... ++++..++|+.+...+...+.. .++|+|+||++|..++......++++++|||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRG-GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcC-CCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 999999999999999998776 7888899999887776665554 46999999999999988888889999999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 271 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (418)
.+.+ .++...+..++..++...|.+++|||++.....++..++.++..+.+.... .....+.+.+.......+...+.
T Consensus 160 ~ll~-~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 160 RMLD-MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHhc-cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHH
Confidence 9987 688888999999898889999999999998888888888888776654332 22344555666666667777788
Q ss_pred HHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEE
Q 014801 272 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 351 (418)
Q Consensus 272 ~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~v 351 (418)
.++......++||||++++.++.+++.|...++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 88877777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 352 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 352 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|+|+.|.+..+|+||+||+||.|..|.+++++. .++...++.+++.++.+++
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~-~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVC-VDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEec-HHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999 5677788889998887764
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-57 Score=430.37 Aligned_cols=366 Identities=40% Similarity=0.669 Sum_probs=338.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC--CCCCeeEEEecCc
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHT 114 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~--~~~~~~~lii~P~ 114 (418)
..|.++++++++++++.+.||..|+|+|..++|.++.|++++..++||+|||++|.+++++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999773 3222128999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
++|+.|+++.++.+.....++++..++||.+...+...+..+ ++|+|+||.+++.++.+..+.+.++.++|+|||+.+.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhh
Confidence 999999999999998876568899999999999888888876 8999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCc-ccccccceEEEEEechhh-HHHHHHH
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELE-KNRKLND 272 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~ 272 (418)
+ ++|...+..+...++...|.+++|||++..+..+...++.+|..+.+.... ......+.+.++.+.... +...+..
T Consensus 188 d-~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 188 D-MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred c-CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 8 799999999999999999999999999999999999999999877777332 236778888888888765 9999999
Q ss_pred HHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEE
Q 014801 273 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 352 (418)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi 352 (418)
++......++||||++...++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 353 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
+|+.|.+...|+||+||+||.|+.|.++.|+.+..+...+..+++.+...++
T Consensus 347 nyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 347 NYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999976688889999988776644
No 8
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.1e-57 Score=436.63 Aligned_cols=367 Identities=35% Similarity=0.637 Sum_probs=330.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.+|.++++++.+++++.+.||.+|+|+|.++++.++.++++++.||||+|||++|.++++..+......+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 45999999999999999999999999999999999999999999999999999999999988766555668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+++.+..+....+++++..++|+.+...+...+..+ ++|+|+||+++..++....+.++++++||+||||.+..
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~- 163 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR- 163 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh-
Confidence 9999999999998777789999999998888777766654 69999999999999998888899999999999999987
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (418)
.++...+..++..++...|++++|||++..+..+...++.++..+.+.... .....+.+.++......+...+..++..
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~ 242 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEA 242 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHh
Confidence 688899999999999999999999999999999999999988777655443 2334556677777777788888888888
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
....++||||+++..+..++..|.+.++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+|+.
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
|.+...|+||+||+||.|+.|.+++++. ..+...++.+++.++..++.+.
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ai~~v~-~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGRALLFVE-NRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCCHHHHHHHhccccCCCCcceEEEEec-hHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999998 4566778888888887776653
No 9
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-59 Score=388.49 Aligned_cols=400 Identities=38% Similarity=0.634 Sum_probs=366.1
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCC
Q 014801 5 TTRKKMLKLPIPSLPKQTAKPPRSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSG 84 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tG 84 (418)
+.|+..++.|..+. -..+..........|+++.|..+++..+...|+..|.|+|.+++|..+.|++++..|..|
T Consensus 59 ~dwk~~l~lpp~d~------R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNG 132 (459)
T KOG0326|consen 59 KDWKATLKLPPKDT------RYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNG 132 (459)
T ss_pred hhhHHhccCCCCCc------cccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCC
Confidence 45666666664431 122223334466789999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEec
Q 014801 85 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGT 164 (418)
Q Consensus 85 sGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T 164 (418)
+|||.+|+++++..+.......+.++++|+++|+-|+...+..+++.. ++.+...+||++...+.-.+.+. .+++|+|
T Consensus 133 TGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~-VH~~vgT 210 (459)
T KOG0326|consen 133 TGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQT-VHLVVGT 210 (459)
T ss_pred CCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCc-eEEEEcC
Confidence 999999999999999988888899999999999999999999999988 89999999998877665555444 7999999
Q ss_pred cHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEc
Q 014801 165 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
|.+++++..+.--.++++.++|+|||+.+.+ .+|...+..++..+++..|+++.|||+|-.+..+..+++.+|..+..-
T Consensus 211 PGRIlDL~~KgVa~ls~c~~lV~DEADKlLs-~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM 289 (459)
T KOG0326|consen 211 PGRILDLAKKGVADLSDCVILVMDEADKLLS-VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM 289 (459)
T ss_pred ChhHHHHHhcccccchhceEEEechhhhhhc-hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh
Confidence 9999999999888899999999999999998 799999999999999999999999999999999999999999887765
Q ss_pred CCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHh
Q 014801 245 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKG 324 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 324 (418)
.+ ..+..+.++|-.+.+..+...+..++..+.-++.|||||+...++.+++.+.+.|+.|..+|+.|.++.|..++..
T Consensus 290 ~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHd 367 (459)
T KOG0326|consen 290 EE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHD 367 (459)
T ss_pred hh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhh
Confidence 54 5677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 325 FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 325 f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|++|.++.||||+.+.+|+|++.+++||.|+.|.++.+|.+|+||.||.|..|.++.++. .+|...+..+++.+..+++
T Consensus 368 Fr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLit-yedrf~L~~IE~eLGtEI~ 446 (459)
T KOG0326|consen 368 FRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLIT-YEDRFNLYRIEQELGTEIK 446 (459)
T ss_pred hhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEe-hhhhhhHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999 7777889999999999999
Q ss_pred ccCcccccCCCC
Q 014801 405 ELPEQIDTSTYM 416 (418)
Q Consensus 405 ~~~~~~~~~~~~ 416 (418)
++|+.++.+.|-
T Consensus 447 pip~~iDk~lyv 458 (459)
T KOG0326|consen 447 PIPSNIDKSLYV 458 (459)
T ss_pred cCCCcCCccccc
Confidence 999999999883
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-57 Score=433.95 Aligned_cols=365 Identities=30% Similarity=0.520 Sum_probs=320.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-------CCCeeEE
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTAL 109 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-------~~~~~~l 109 (418)
.+|+++++++.+++.|.+.||..|+++|.++++.++.|+++++.+|||+|||++|+++++..+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 569999999999999999999999999999999999999999999999999999999999876432 1235899
Q ss_pred EecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEe
Q 014801 110 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILD 188 (418)
Q Consensus 110 ii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViD 188 (418)
|++||++|+.|+++.+.++.... ++++..++|+.....+...+..+ .+|+|+||++|..++... .+.+..+++||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~-~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQG-VDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCC-CCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 99999999999999999998776 89999999999888777666544 699999999999988765 4668889999999
Q ss_pred chhhhccCCCCHHHHHHHHhhCCC--CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhH
Q 014801 189 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 266 (418)
Q Consensus 189 E~h~~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (418)
|+|.+.+ .++...+..++..++. ..|++++|||++..+..+...++.++..+.+.... .....+.+.+.......+
T Consensus 167 EAh~lld-~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 167 EADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEK 244 (572)
T ss_pred CHHHHhh-cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHH
Confidence 9999987 6888888888887775 67899999999998888888888887766554432 233445566666667777
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC
Q 014801 267 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 346 (418)
Q Consensus 267 ~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~ 346 (418)
...+..++....+.++||||++++.++.+++.|.+.++.+..+|++++..+|..+++.|++|+++|||||+++++|+|+|
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 78888888877788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcccc
Q 014801 347 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 406 (418)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
++++||+|+.|.+...|+||+||+||.|..|.+++|+. ..+...+..+++.++.+++..
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~-~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC-ERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec-HHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999998 455667888888887766433
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.8e-57 Score=431.84 Aligned_cols=378 Identities=31% Similarity=0.502 Sum_probs=325.3
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-------CCCC
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQ 105 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-------~~~~ 105 (418)
|-+..+|+++++++.+++.+...||..|+|+|.++++.++.|+++++++|||||||++|+++++..+.. ...+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 345667999999999999999999999999999999999999999999999999999999999876431 2245
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEE
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHF 185 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 185 (418)
+++||++||++|+.|+.+.++.+.... ++++..+.||.....+...+..+ .+|+|+||++|..++.+....++++++|
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEE
Confidence 689999999999999999999887766 78888888888777666666554 6999999999999999888889999999
Q ss_pred EEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh
Q 014801 186 ILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE 265 (418)
Q Consensus 186 ViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
|+||||.+.+ .++...+..+....+ .+|++++|||++..+..++..+..++..+....... ......+....+....
T Consensus 275 ViDEad~ml~-~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 275 VLDEVDCMLE-RGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQ 351 (518)
T ss_pred EeecHHHHhh-cchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchh
Confidence 9999999987 688888888877774 578999999999999888888888887776654432 2233444555555556
Q ss_pred HHHHHHHHHhhcC--CCeEEEEeCCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccC
Q 014801 266 KNRKLNDLLDALD--FNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 342 (418)
Q Consensus 266 ~~~~l~~~~~~~~--~~~~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G 342 (418)
+...+.+++.... ..++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+++|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 6666667766543 36899999999999999999975 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCC
Q 014801 343 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 416 (418)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+|++++||+|+.|.+..+|+||+||+||.|..|.+++|+. .++...+..+.+.++..-..+|+++.++-|.
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~-~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 504 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN-EEDRNLFPELVALLKSSGAAIPRELANSRYL 504 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc-hhHHHHHHHHHHHHHHcCCCCCHHHHhChhh
Confidence 999999999999999999999999999999999999999998 5667778888888888888999998887664
No 12
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-56 Score=424.51 Aligned_cols=363 Identities=31% Similarity=0.590 Sum_probs=321.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC-------CCeeEE
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTAL 109 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-------~~~~~l 109 (418)
..|..+++++.+.++|.+.|+..|+++|.++++.+++|+++++.+|||||||++|+++++..+.... +.+++|
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 3588899999999999999999999999999999999999999999999999999999998875432 145899
Q ss_pred EecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEec
Q 014801 110 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 189 (418)
Q Consensus 110 ii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 189 (418)
|++||++|+.|+.+.++.+.... ++++..++|+.....+...+.....+|+|+||++|..+...+...++++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999999988776 88999999998877777777666679999999999999888888899999999999
Q ss_pred hhhhccCCCCHHHHHHHHhhCCC--CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH
Q 014801 190 CDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 267 (418)
Q Consensus 190 ~h~~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
+|.+.+ .++...+..+....+. ..|++++|||++.+....+..+..++..+.+.... .......+.+.......+.
T Consensus 246 ah~l~~-~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 246 ADRMLD-MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred HHHHHh-cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 999987 5788888888877753 56899999999998888999998888776554432 2223345556666666777
Q ss_pred HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 268 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
..+..++......++||||++++.++.+++.|.+.++.+..+||+++.++|..+++.|++|++++||||+++++|+|+|+
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 88888888777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCc
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 403 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
+++||+++.|.|..+|+||+||+||.|+.|.+++|+. ++|..++..+++.+...+
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~-~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAG-EDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEec-HHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999998 557778899999998887
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-57 Score=371.22 Aligned_cols=370 Identities=39% Similarity=0.666 Sum_probs=347.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
...|++.|+.+++++++-..||.+|..+|+.|++.+++|++++..+..|+|||.++.+.++..+.-+.+..+++++.||+
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 45699999999999999999999999999999999999999999999999999999999999888777777999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.+..++... ++.+..+.||.+..++.+.+.-+ .+++.+||.+...+.++..+....+.++|+||++.+.+
T Consensus 106 ELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~ 183 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN 183 (400)
T ss_pred HHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH
Confidence 99999999999998887 99999999999988888777755 49999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh-HHHHHHHHH
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 274 (418)
.++...+-.+++.++++.|++++|||+|.++......++.+|+.+.+.... ...+.+.+.|+.+...+ +.+.|.++.
T Consensus 184 -kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLY 261 (400)
T KOG0328|consen 184 -KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLY 261 (400)
T ss_pred -hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHh
Confidence 599999999999999999999999999999999999999999999887765 46777888888887655 888899998
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
..+.-.+++|||+++..+..+.+.+++.++.+.+.||+|.+++|..+++.|+.|+.+|||+|++.++|+|+|.+++||.|
T Consensus 262 d~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNY 341 (400)
T KOG0328|consen 262 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINY 341 (400)
T ss_pred hhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEec
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+.|.+...|++|+||.||.|++|.++-|+. +++.+.+..++++|.....++|.-+
T Consensus 342 DLP~nre~YIHRIGRSGRFGRkGvainFVk-~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 342 DLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred CCCccHHHHhhhhccccccCCcceEEEEec-HHHHHHHHHHHHHHhhhcccccchh
Confidence 999999999999999999999999999999 8899999999999999999998654
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.8e-56 Score=418.89 Aligned_cols=362 Identities=35% Similarity=0.584 Sum_probs=315.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC----CCCCeeEEEecC
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVLCH 113 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~----~~~~~~~lii~P 113 (418)
+|+++++++.+++.+.+.|+.+|+++|.++++.++.|+++++++|||+|||++|+++++..+.. .....++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 5899999999999999999999999999999999999999999999999999999999987642 122358999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
+++|+.|+.+.++.+.... ++++..++|+.....+...+..+ .+|+|+||++|..++....+.+.++++||+||||.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSEN-QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999998776 89999999999888776665544 699999999999999988888999999999999999
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCc-cHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec-hhhHHHHHH
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 271 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 271 (418)
.+ .++...+..+....+...|++++|||++. ....+...++.++..+....... ....+.+.+.... ...+...+.
T Consensus 160 l~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LD-MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hC-CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHH
Confidence 87 68899999998888888899999999985 46677777777877766544332 2333444454444 355677788
Q ss_pred HHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEE
Q 014801 272 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 351 (418)
Q Consensus 272 ~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~v 351 (418)
.++......++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 88877677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 352 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 352 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|+++.|.|...|+||+||+||.|..|.+++++. ..+...+..+++.+...++
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~-~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVE-AHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEec-HHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998 5667778888877765553
No 15
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.2e-55 Score=411.00 Aligned_cols=370 Identities=38% Similarity=0.668 Sum_probs=320.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++.+.+++.+.|+..|+++|.++++.++.++++++++|||+|||++|+++++..+.....+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 46799999999999999999999999999999999999999999999999999999999998886555556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.+..+.... +..+..+.|+.....+...+..+ .+|+|+||+.+...+.+....++++++||+||+|++.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 99999999999887665 77778888887766665555554 59999999999998888878899999999999999887
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech-hhHHHHHHHHH
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 274 (418)
.++...+..++.......|++++|||++.....+...+..++....+.... .......+.+..... ..+...+..+.
T Consensus 185 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 185 -RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLY 262 (401)
T ss_pred -cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHH
Confidence 577778888888888889999999999998888888888887766544322 233444444444443 33556666777
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
......++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~ 342 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINY 342 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEE
Confidence 76677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+.|.|...|.||+||+||.|+.|.++.++. .++...+..+++.+..++++++...
T Consensus 343 ~~p~s~~~y~qr~GRagR~g~~G~~i~l~~-~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 343 DLPASPENYIHRIGRSGRFGRKGVAINFVT-PDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred CCCCCHHHEeecccccccCCCCceEEEEEc-HHHHHHHHHHHHHHCCcccccCcch
Confidence 999999999999999999999999999998 6677788999999999888876543
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.2e-53 Score=374.79 Aligned_cols=370 Identities=33% Similarity=0.519 Sum_probs=334.8
Q ss_pred CCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC---
Q 014801 27 RSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--- 103 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~--- 103 (418)
..+...|-+-.+|++.+++.++++.+...|+..|+|+|+.+++..+++++++..+.||||||.+|+++++..+...+
T Consensus 235 ~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~ 314 (673)
T KOG0333|consen 235 IKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA 314 (673)
T ss_pred ecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc
Confidence 34555555667899999999999999999999999999999999999999999999999999999998887654332
Q ss_pred ------CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC
Q 014801 104 ------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL 177 (418)
Q Consensus 104 ------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 177 (418)
.++.+++++||++|++|+.++-.++++.+ ++++..+.||...+++.-.+..+ ++|+|+||..|...+.+..+
T Consensus 315 ~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~g-ceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 315 RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMG-CEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred hhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhcc-ceeeecCchHHHHHHHHHHH
Confidence 46789999999999999999999999988 89999999999999887777777 59999999999999999999
Q ss_pred CCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC-------------------------CccEEEEEecCCccHHHHHH
Q 014801 178 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-------------------------DKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 178 ~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~i~lSAT~~~~~~~~~~ 232 (418)
.+..+.++|+||++.+.+ ++|...+..++..++. ..|.+.+|||+++.+..+++
T Consensus 393 vl~qctyvvldeadrmiD-mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMID-MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred HhccCceEeccchhhhhc-ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH
Confidence 999999999999999998 8999888888866542 14899999999999999999
Q ss_pred HhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCC
Q 014801 233 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 312 (418)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~ 312 (418)
.++.+|..+.++.... ....+.+.....+.+++...|..++......++|||+|..+.|+.+++.|.+.|+++..+||+
T Consensus 472 ~ylr~pv~vtig~~gk-~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~ 550 (673)
T KOG0333|consen 472 SYLRRPVVVTIGSAGK-PTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGG 550 (673)
T ss_pred HHhhCCeEEEeccCCC-CccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCC
Confidence 9999999988877654 455677888888999999999999999988999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHH
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 392 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 392 (418)
-++++|...+..|+.|..+|+|||+++++|+|+|++.+||.|+.+.|...|.||+||.||.|+.|.++.|+...++..+.
T Consensus 551 k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 551 KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFY 630 (673)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred HHHHHHhc
Q 014801 393 NQVQARFE 400 (418)
Q Consensus 393 ~~~~~~~~ 400 (418)
+..+...+
T Consensus 631 dLkq~l~e 638 (673)
T KOG0333|consen 631 DLKQALRE 638 (673)
T ss_pred HHHHHHHH
Confidence 66555543
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-53 Score=370.21 Aligned_cols=369 Identities=29% Similarity=0.520 Sum_probs=327.3
Q ss_pred CCccCCC--CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC-----CCeeEE
Q 014801 37 SGFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-----GQVTAL 109 (418)
Q Consensus 37 ~~~~~~~--l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-----~~~~~l 109 (418)
..|++++ |++++++++...||...+|.|..++|.++.++++++.++||||||++|+++++..+.... ...-++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3466655 559999999999999999999999999999999999999999999999999998873221 113579
Q ss_pred EecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC--CCCCccEEEE
Q 014801 110 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFIL 187 (418)
Q Consensus 110 ii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~iVi 187 (418)
||+||++|+.|+......+...++.+++..+.||.+...+...+.+..++|+|+||+++..++.+... ++.++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 99999999999999999998887899999999999999999999888889999999999999987544 4559999999
Q ss_pred echhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcc-cccccceEEEEEechhhH
Q 014801 188 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELEK 266 (418)
Q Consensus 188 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (418)
|||+.+.+ .+|...+..++..+++..+.=++|||...++.++...-+.+|..+.+..... ..+..+...|..+....+
T Consensus 164 DEADrLld-mgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLD-MGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred cchHhHhc-ccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 99999998 8999999999999999999999999999999999999999999988765442 356678888999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCC
Q 014801 267 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 344 (418)
Q Consensus 267 ~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d 344 (418)
...+.+++.....+++|||.++=..++.+...|... ......+||.|.+..|..+++.|.+..-.+++||+++++|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999888888765 678899999999999999999999977889999999999999
Q ss_pred CCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 345 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+|+++.||++|+|.++..|.||+||++|.|+.|.+++|+-+ .+..+...++-.-...++.+-
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p-~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP-REEAYVEFLRIKGKVELERID 384 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc-cHHHHHHHHHhcCccchhhhc
Confidence 99999999999999999999999999999999999999996 666666666555444444443
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-53 Score=359.05 Aligned_cols=369 Identities=32% Similarity=0.535 Sum_probs=332.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
-.+|..+|+++|+.+.+...|+.+|+|+|..++|+++.|++++=+|-||||||+++.+++++.+.+.+.+..+++++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC----CCCCCCccEEEEechh
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK----DLSLKNVRHFILDECD 191 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~~~iViDE~h 191 (418)
+|+-|..+.|..+.+.. ++++.++.||...-.+...+.+. ++++|+||+++..++..+ -+-++++.++|+|||+
T Consensus 86 ELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~r-PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDR-PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccC-CCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 99999999999988777 99999999998876666666655 699999999999888765 3447889999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcC-CcccccccceEEEEEechhhHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD-EAKLTLHGLVQHYIKLSELEKNRKL 270 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 270 (418)
.+.+ ..|...+..+....+...|.+++|||+.+.+.....-....+..+.... ......+.+.+.|+.++...+...+
T Consensus 164 rvL~-~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 164 RVLA-GCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhc-cchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 9998 6899999999999999999999999999887766555444433333333 4456778889999999998888888
Q ss_pred HHHHhhc---CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 271 NDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 271 ~~~~~~~---~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
..+++.. .++.++||+++-.+|+.++..|+..++.+..+|+.|++.+|...+..|+.+..++||||+++++|+|+|.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 8777765 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCc
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 408 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
++.|+.++.|.++..|++|.||..|.|+.|.++.|+. ..|.+.+..++..++..+.+.+.
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt-~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT-QRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec-hhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999 88899999999999999887764
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-53 Score=364.43 Aligned_cols=372 Identities=31% Similarity=0.527 Sum_probs=339.9
Q ss_pred cCCCccC-CCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC------CCCCee
Q 014801 35 HSSGFRD-FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVT 107 (418)
Q Consensus 35 ~~~~~~~-~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~------~~~~~~ 107 (418)
+.-+|++ |...+++.+.+.+.||.+|+|+|.+|||.+++|++++-+|-||+|||++++++.+..+.. ...++.
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCc
Confidence 3445766 778899999999999999999999999999999999999999999999999988876533 334568
Q ss_pred EEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEE
Q 014801 108 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 187 (418)
Q Consensus 108 ~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 187 (418)
+|+++||++|+.|+.-+..++.-. +.+..++.|+.+..++.+.+..+ .+|+++||.+|..+...+-+++.++.++|+
T Consensus 297 ~lvl~ptreLalqie~e~~kysyn--g~ksvc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYN--GLKSVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhc--CcceEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 999999999999998888776532 88888999999999999988887 799999999999999999999999999999
Q ss_pred echhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH
Q 014801 188 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 267 (418)
Q Consensus 188 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
||++.+.+ ++|...+.+++-..+++.|.++.|||.|..++.++..++++|..+++..-.......+.+.++...+.++.
T Consensus 374 DEADrMLD-MgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 374 DEADRMLD-MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred cchhhhhc-ccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 99999998 89999999999999999999999999999999999999999999999888877888888888888888888
Q ss_pred HHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC
Q 014801 268 RKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 346 (418)
Q Consensus 268 ~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~ 346 (418)
..+..++.+. ...++||||.....+..+...|.-.|+....+||+-.+.+|+..++.|+.|+++|||+|+..++|+|+|
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVP 532 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCch
Confidence 8888888876 567999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 347 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
++.||+.|+.|.+..+|++|+||.||.|++|.++.++. .+|-.....|.+.++..-+++|+++.
T Consensus 533 DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt-~~D~~~a~eLI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 533 DITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT-RNDWSMAEELIQILERAEQEVPDELV 596 (629)
T ss_pred hcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEe-hhhHHHHHHHHHHHHHhhhhCcHHHH
Confidence 99999999999999999999999999999999999999 66777788888899988888888764
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-54 Score=376.71 Aligned_cols=357 Identities=34% Similarity=0.605 Sum_probs=324.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC---CeeEEEecC
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCH 113 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~---~~~~lii~P 113 (418)
.+|.+.+|+..+++++...||..|+|+|...+|..+-|++++-||.||||||.+|+++++.++...+. ..++|++||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 47999999999999999999999999999999999999999999999999999999999998765543 348999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEechhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDK 192 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~ 192 (418)
|++|+.|.....++++... ++.++.+.||.+...+...+... +||+|+||++|...+++. .++++++.++|+||++.
T Consensus 261 TRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred cHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999988777 89999999999999988888876 699999999999988764 57799999999999999
Q ss_pred hccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec---hhhHHHH
Q 014801 193 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS---ELEKNRK 269 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 269 (418)
+.. .+|...+..+...++++.|.+++|||+...+.+++..-+..|+.+.++.... ....+.+.|+... +..+...
T Consensus 339 MLe-egFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~-~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLE-EGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD-TAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHH-HHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc-cchhhhHHHheeccccccccHHH
Confidence 998 7999999999999999999999999999999999999999999999887765 3444555555443 3446677
Q ss_pred HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCC
Q 014801 270 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 349 (418)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~ 349 (418)
+..++...-...+|||+.+.+.|..+.-.|--+|.++.-+||++++.+|.+.++.|++++++|||||++.++|+|++++.
T Consensus 417 l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 417 LASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 77788777778999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHH
Q 014801 350 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 398 (418)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (418)
+||.|..|.+...|+||+||..|.|+.|.++.|+. +++.++++.+.+.
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg-E~dRkllK~iik~ 544 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVG-ESDRKLLKEIIKS 544 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEec-cccHHHHHHHHhh
Confidence 99999999999999999999999999999999999 5677777776665
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-52 Score=373.13 Aligned_cols=382 Identities=33% Similarity=0.521 Sum_probs=340.7
Q ss_pred CCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC---
Q 014801 27 RSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--- 103 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~--- 103 (418)
.++...|.+...|....+.+.+...+...++..|+|+|+.+++.+..|++++++|+||+|||.+|+++++..+....
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 55666666667888888999999999999999999999999999999999999999999999999999998865432
Q ss_pred -------CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC
Q 014801 104 -------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD 176 (418)
Q Consensus 104 -------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 176 (418)
..+.++|++||++|+.|++.+.+++.-.. +++....+|+.+.-.+...+..+ .+|+|+||.+|.++++...
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~g-cdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRG-CDILVATPGRLKDLIERGK 221 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccC-ccEEEecCchhhhhhhcce
Confidence 24789999999999999999999987665 88999999998887777777777 5999999999999999999
Q ss_pred CCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC----CccEEEEEecCCccHHHHHHHhcCC-CeEEEEcCCccccc
Q 014801 177 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH----DKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAKLTL 251 (418)
Q Consensus 177 ~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~----~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (418)
+.+++++++|+||++.+.+..+|.+.+..+...... ..|.+++|||.|..+...+..+..+ ...+.+.... ...
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~ 300 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STS 300 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-ccc
Confidence 999999999999999999888999999999988765 6799999999999988888887776 4444444333 355
Q ss_pred ccceEEEEEechhhHHHHHHHHHhhcC----CC-----eEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 014801 252 HGLVQHYIKLSELEKNRKLNDLLDALD----FN-----QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRY 322 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-----~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~ 322 (418)
+.+.+....+.+..+...+.+++.... .+ +++|||.+++.+..++..|...++++..+|+..++.+|.+.+
T Consensus 301 ~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 301 ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQAL 380 (482)
T ss_pred ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHH
Confidence 677888888888888888888877543 23 899999999999999999999999999999999999999999
Q ss_pred HhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccC
Q 014801 323 KGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 402 (418)
Q Consensus 323 ~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (418)
+.|++|.+.+||||+++++|+|+|+++|||.|+.|.+..+|++|+||+||.|+.|.++.|++ ..+....+.|-+.+...
T Consensus 381 ~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 381 NDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILTEA 459 (482)
T ss_pred HHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 77778889999999999
Q ss_pred ccccCccccc
Q 014801 403 IKELPEQIDT 412 (418)
Q Consensus 403 ~~~~~~~~~~ 412 (418)
-+++|.|+.+
T Consensus 460 ~q~vP~wl~~ 469 (482)
T KOG0335|consen 460 NQEVPQWLSE 469 (482)
T ss_pred cccCcHHHHh
Confidence 9999999876
No 22
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-52 Score=360.78 Aligned_cols=373 Identities=29% Similarity=0.460 Sum_probs=327.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccC------CCCCCeeEEE
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE------PNPGQVTALV 110 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~------~~~~~~~~li 110 (418)
-+|++++|++.+++++.+.|+..|+-+|..++|.++.|++++..|-||||||.+|++++++.+. .+..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 4799999999999999999999999999999999999999999999999999999999998753 2334568999
Q ss_pred ecCcHHHHHHHHHHHHHHhccCC-CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC-CCCCCccEEEEe
Q 014801 111 LCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILD 188 (418)
Q Consensus 111 i~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViD 188 (418)
++||++|+.|.+..+.++....+ .+++..+..+.+-+.....+. ..++|+|+||.++..++...- ..++.+.++|+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~-d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALM-DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHc-cCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999998876653 566666665555555444444 447999999999999888765 668889999999
Q ss_pred chhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHH
Q 014801 189 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 268 (418)
Q Consensus 189 E~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
||+.+.+ .++...+..+...+++..|.++||||+.+++..+-..++.+|+..............+.++++.+++.++..
T Consensus 178 EADLlls-fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 178 EADLLLS-FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred hhhhhhh-cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999998 899999999999999999999999999999999999999999998888877777888999999999988888
Q ss_pred HHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec----------
Q 014801 269 KLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD---------- 337 (418)
Q Consensus 269 ~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~---------- 337 (418)
.+..+++- .-.++.|||+|+.+.|..+.-.|.+.|++..+++|.++...|.-+++.|+.|-++++|||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 88777764 3568999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------ccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHH
Q 014801 338 -------------------------LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 392 (418)
Q Consensus 338 -------------------------~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 392 (418)
-.++|+|+.++++|+.||.|.+...|++|+||.+|.+++|.++.|+.+.+... .
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g-~ 415 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFG-K 415 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhh-h
Confidence 24589999999999999999999999999999999999999999999766554 3
Q ss_pred HHHHHHhccCccccCccccc
Q 014801 393 NQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~ 412 (418)
..++..+..++..+..++..
T Consensus 416 ~~le~~~~d~~~~~~~qilq 435 (569)
T KOG0346|consen 416 ESLESILKDENRQEGRQILQ 435 (569)
T ss_pred hHHHHHHhhHHhhcCccccc
Confidence 67777777766555555443
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-51 Score=361.98 Aligned_cols=358 Identities=30% Similarity=0.518 Sum_probs=322.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC----CCCeeEEEe
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVL 111 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~----~~~~~~lii 111 (418)
...|+...+++...+++..+||..+++.|...++.++.|++++..|-||+|||++|++++...+.+. +.+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 4568889999999999999999999999999999999999999999999999999999999876433 244579999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC-CCCCCccEEEEech
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDEC 190 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDE~ 190 (418)
+||++|+.|.+.+.+++....+++.+..+.||.+.......+..+ .+|+|+||.+|..++.+.. ..+...+++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 999999999999999999888899999999999998888888884 7999999999999888754 44566789999999
Q ss_pred hhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCC-CeEEEEcC-CcccccccceEEEEEechhhHHH
Q 014801 191 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDD-EAKLTLHGLVQHYIKLSELEKNR 268 (418)
Q Consensus 191 h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
+++.+ .+|...+..+...++...|.+++|||.++.+++++...+.. +..+.+.. ......+.+.+.|+.++...+.-
T Consensus 240 DrlLd-~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 240 DRLLD-IGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred hhhhh-cccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99998 89999999999999999999999999999999998876655 55555443 44456677888888888888888
Q ss_pred HHHHHHhhcCC-CeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 269 KLNDLLDALDF-NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 269 ~l~~~~~~~~~-~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
.+..+++.+.. .++||||++-.....+++.|....++|..+||++++..|..+...|.+.+.-||+||++.++|+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88888888766 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHH
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 396 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 396 (418)
++.||.+++|.++.+|+||+||.||.|..|.+++++. ..+..++..++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~-p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLA-PWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeC-hhHHHHHHHHh
Confidence 9999999999999999999999999999999999999 66777777777
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-51 Score=363.64 Aligned_cols=358 Identities=28% Similarity=0.514 Sum_probs=329.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC----CCCeeEEEec
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLC 112 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~----~~~~~~lii~ 112 (418)
..|+++++++...++|...+|..++.+|+++++..++|++++=.|-||||||++|+++++..+... ..+.-+|||.
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2345689999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHh-cCCCCCCCccEEEEechh
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECD 191 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~-~~~~~~~~~~~iViDE~h 191 (418)
||++|+.|+.+.+.+.++.. ++..+.+.||...+.....+.. .+|+||||++|+..+. +..+...++.++|+|||+
T Consensus 149 PTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred chHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 99999999999999999888 9999999999988776666655 4999999999988665 455667889999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCc-ccccccceEEEEEechhhHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELEKNRKL 270 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 270 (418)
.+.+ ++|...+..++..++...|.+++|||....+.++++.-+.+|..+.+.... ...+..+.+.|+.++...+...|
T Consensus 226 R~LD-MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 226 RMLD-MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHH-HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 9998 899999999999999999999999999999999999999999988877443 56778899999999999999999
Q ss_pred HHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 271 NDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 271 ~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
-.+++.+...+.|||+.+-+++..+++.+.++ |++...+||.|++..|..+...|.....-||+||+++++|+|+|.+
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99999999999999999999999999999876 8899999999999999999999999888899999999999999999
Q ss_pred CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHH
Q 014801 349 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 398 (418)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (418)
++||.+++|.+..+|++|+||..|.+..|.+++++.+.++..++..+++.
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999989999988887
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.6e-50 Score=393.20 Aligned_cols=352 Identities=18% Similarity=0.265 Sum_probs=275.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHH
Q 014801 43 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 122 (418)
Q Consensus 43 ~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~ 122 (418)
.+++++.+.|.+.|+.+|+++|.++++.+++|+++++.+|||||||++|+++++..+..++ +.++||++|+++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999886644 348999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHh-cC---CCCCCCccEEEEechhhhccCCC
Q 014801 123 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DK---DLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~-~~---~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
+.++++. . .++++..+.|+.....+ ..+..+ ++|+|+||+++...+. .. ...++++++||+||+|.+.+ .
T Consensus 99 ~~l~~l~-~-~~i~v~~~~Gdt~~~~r-~~i~~~-~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g--~ 172 (742)
T TIGR03817 99 RAVRELT-L-RGVRPATYDGDTPTEER-RWAREH-ARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG--V 172 (742)
T ss_pred HHHHHhc-c-CCeEEEEEeCCCCHHHH-HHHhcC-CCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC--c
Confidence 9999986 2 37888888888775443 334443 6999999999975322 11 12378899999999999865 3
Q ss_pred CHHHH-------HHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec---------
Q 014801 199 MRRDV-------QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS--------- 262 (418)
Q Consensus 199 ~~~~~-------~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 262 (418)
+...+ .++....+..+|++++|||+++.. ..+..+++.+.... ......... ....+....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~~~~~-~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGSPRGA-RTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCCCcCc-eEEEEecCCccccccccc
Confidence 44332 233334556789999999999874 46777777775543 222111111 111111111
Q ss_pred -------hhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHhhhc
Q 014801 263 -------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKE 327 (418)
Q Consensus 263 -------~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (418)
...+...+..++.. +.++||||++++.++.++..|.+. +..+..+|+++++++|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 12344455555553 579999999999999999988753 5678899999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHHHHHHhccCcccc
Q 014801 328 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFEVDIKEL 406 (418)
Q Consensus 328 g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 406 (418)
|++++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++...+ .|..++...++.++..++..
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999888743 45556666777777666543
No 26
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-52 Score=336.70 Aligned_cols=356 Identities=79% Similarity=1.246 Sum_probs=338.4
Q ss_pred CCCCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC
Q 014801 25 PPRSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG 104 (418)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~ 104 (418)
....++|..++++.|.+|-|.|++++++.++||..|...|++++|...-|.++++.|..|.|||.++.++.++++....+
T Consensus 30 ~d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g 109 (387)
T KOG0329|consen 30 KDKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG 109 (387)
T ss_pred ccccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccE
Q 014801 105 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 184 (418)
Q Consensus 105 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 184 (418)
...++++|.|++|+-|+..++.+++++.|++++.+++||...+...+.+++ +++|+|+||.++..+.++..+++++++.
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k~l~lk~vkh 188 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNRSLNLKNVKH 188 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhccCchhhcce
Confidence 888999999999999999999999999999999999999999988888888 6899999999999999999999999999
Q ss_pred EEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechh
Q 014801 185 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL 264 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
.|+|||+.+..+.+.+..++.+.+..+...|+..+|||++.+++..+.+++.+|..++++.+....+..+.++|+...+.
T Consensus 189 FvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~ 268 (387)
T KOG0329|consen 189 FVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN 268 (387)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCC
Q 014801 265 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 344 (418)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d 344 (418)
+++..+.+++..+.-++++||+.+... | + | .-+ +|+|+..++|+|
T Consensus 269 eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 269 EKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred hhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccC
Confidence 999999999999999999999988665 1 0 3 123 789999999999
Q ss_pred CCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCC
Q 014801 345 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 416 (418)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+-+++.++.|+.|.+..+|.+|.|||||.|..|.++.+++..++...+...+..++..+.++|+.++-|+|.
T Consensus 314 iervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdeid~s~y~ 385 (387)
T KOG0329|consen 314 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEIDFSTYE 385 (387)
T ss_pred cccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 27
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-49 Score=335.96 Aligned_cols=370 Identities=32% Similarity=0.559 Sum_probs=328.3
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEE
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 110 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~li 110 (418)
-.+..+|++++|.|++++++-.++|.+|..+|..|+|.++.. ++.+-.+..|+|||.+|.+.++.+.......|+++.
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 344568999999999999999999999999999999999984 679999999999999999999999998888889999
Q ss_pred ecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEec
Q 014801 111 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDE 189 (418)
Q Consensus 111 i~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE 189 (418)
++|+++|+.|..+.+.++++.. +++......+.....- ..+ ..+|+++||..+..+... .-+.+..++.+|+||
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~i---~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDE 240 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NKL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDE 240 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Ccc---hhheeeCCCccHHHHHHHHHhhChhhceEEEecc
Confidence 9999999999999999998776 7777665544311111 111 138999999999998877 677889999999999
Q ss_pred hhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech-hhHHH
Q 014801 190 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNR 268 (418)
Q Consensus 190 ~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (418)
|+.+.+..++...-.++....+.+.|++++|||....+..++.....++..+.+..+. ..+..+.+.|+.|.. ..+.+
T Consensus 241 AD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 241 ADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred hhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHH
Confidence 9999998888888889999999999999999999999999999999998877666544 577778888888765 56778
Q ss_pred HHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 269 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
.+.++.....-+..||||.++..+..++..|.+.|+.+.++||+++..+|..+++.|+.|..+|||+|+++++|+|++.+
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 88887777777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCC------ChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCc
Q 014801 349 NIVINYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 408 (418)
Q Consensus 349 ~~vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
++||.|+.|. ++..|++|+||+||+|+.|.++-+++..++.+.+..+++.++...+.+..
T Consensus 400 s~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 400 SVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred EEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 9999999985 78899999999999999999999999999999999999999877766544
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-48 Score=343.83 Aligned_cols=380 Identities=31% Similarity=0.468 Sum_probs=338.0
Q ss_pred CCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-----
Q 014801 27 RSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----- 101 (418)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~----- 101 (418)
..+...+.+...|+.++.++.+..+..+..+.+|+|.|.++++..+.+++++=.|.||||||.+|+.+++-++..
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~ 292 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK 292 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc
Confidence 344555666778999999999999999999999999999999999999999999999999999999888876543
Q ss_pred CCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCC
Q 014801 102 NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN 181 (418)
Q Consensus 102 ~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 181 (418)
...+|-.+|+|||++|+.|+..+.++|++.. ++++..++||.+..++...++.+ +.|+||||++|..++..+..++.+
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g-~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEG-AEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcC-CeEEEechHHHHHHHHhhccccee
Confidence 2356689999999999999999999999888 99999999999999999999955 799999999999999999999999
Q ss_pred ccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEE-
Q 014801 182 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK- 260 (418)
Q Consensus 182 ~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (418)
..++|+||++.+.+ .+|...+..+....++..|.+++|||++..+..+++.++.+|+.+....... .-..+.+....
T Consensus 371 vS~LV~DEadrmfd-mGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vge-an~dITQ~V~V~ 448 (731)
T KOG0339|consen 371 VSYLVLDEADRMFD-MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGE-ANEDITQTVSVC 448 (731)
T ss_pred eeEEEEechhhhhc-cccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhc-cccchhheeeec
Confidence 99999999999998 8999999999999999999999999999999999999999999987664332 33344444433
Q ss_pred echhhHHHHHHHH-HhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccc
Q 014801 261 LSELEKNRKLNDL-LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 339 (418)
Q Consensus 261 ~~~~~~~~~l~~~-~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l 339 (418)
.+...++..+... ......+++|+|+.-...+++++..|+..++++..+|+++.+.+|.+++..|+++...|+|+|++.
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDva 528 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVA 528 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHh
Confidence 3445565555444 444566899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 340 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
.+|+|+|.+..||.|+...+...+.||+||.||.|..|..+.++. ..|..+...|-++|+..-+++|..+-
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT-eKDa~fAG~LVnnLe~agQnVP~~l~ 599 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT-EKDAEFAGHLVNNLEGAGQNVPDELM 599 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec-hhhHHHhhHHHHHHhhccccCChHHH
Confidence 999999999999999999999999999999999999999999999 66666889999999999888887653
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-49 Score=337.77 Aligned_cols=369 Identities=40% Similarity=0.679 Sum_probs=345.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+|++.+|++++++.+-..||.+|..+|++|+..+..|.++...+.+|+|||.++..++++.+.......++++++|+++|
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreL 106 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTREL 106 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999998877777789999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCC
Q 014801 118 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 197 (418)
Q Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~ 197 (418)
+.|.....+.++... +.++..+.|+.++......+....++|+++||.....++....+..+.+.+.|+||++.+.+ .
T Consensus 107 a~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs-~ 184 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS-R 184 (397)
T ss_pred HHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-c
Confidence 999998888887776 88999999999888777777776679999999999999998888888899999999999998 7
Q ss_pred CCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhc
Q 014801 198 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 277 (418)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (418)
++...+..++...+...|++++|||.|.++....+.++.+|..+.+..+. ...+.+.+.++......+...+..+..
T Consensus 185 gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~-- 261 (397)
T KOG0327|consen 185 GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR-- 261 (397)
T ss_pred chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH--
Confidence 99999999999999999999999999999999999999999999888776 458888899988888889998888888
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 357 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~ 357 (418)
.-...+||||+++.+..+...|.+.+..+..+|+.+.+.+|..+++.|+.|..+|||+|+.+++|+|+..+..|+.|+.|
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccc
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccccc
Q 014801 358 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 358 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (418)
.+...|.+|+||+||.|++|.++.++. +++...++++++.|...++++|+.+.+
T Consensus 342 ~~~~~yihR~gr~gr~grkg~~in~v~-~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKGVAINFVT-EEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred cchhhhhhhcccccccCCCceeeeeeh-HhhHHHHHhHHHhcCCcceecccchhh
Confidence 999999999999999999999999999 788888999999999999999987653
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-49 Score=347.28 Aligned_cols=364 Identities=29% Similarity=0.484 Sum_probs=302.7
Q ss_pred cccCCCccCCCCCHHHHHHHHHC-CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC------CCCC
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQ 105 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~------~~~~ 105 (418)
++.+..|..+||++-+...|+.. ++..|+.+|++++|.++.|++++|.++||||||++|++++.+.+.. ...+
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 34567899999999999888754 9999999999999999999999999999999999999999987632 3345
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccE
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRH 184 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~ 184 (418)
+-+|+++||++|+.|.++.++++.+.+.-+-.+.+.||...+.....+..+ .+|+|+||+++...+.+ ..+.++++++
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeeeE
Confidence 679999999999999999999998877566677888998888777778777 59999999999987765 4567889999
Q ss_pred EEEechhhhccCCCCHHHHHHHHhhCCC-------------CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCc----
Q 014801 185 FILDECDKMLESLDMRRDVQEIFKMTPH-------------DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---- 247 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---- 247 (418)
||+||++.+.+ .+|...+..+++.... ..|.+++|||+.+.+..++..-+.+|..+..+...
T Consensus 291 lVlDEaDrlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 291 LVLDEADRLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEecchhHHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 99999999998 8999988888766521 25789999999999999988888888777622111
Q ss_pred --------------------ccccccceEEEEEechhhHHHHHHHHHhhc----CCCeEEEEeCCchhHHHHHHHHHhC-
Q 014801 248 --------------------KLTLHGLVQHYIKLSELEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAELNKLLVEC- 302 (418)
Q Consensus 248 --------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~lif~~~~~~~~~~~~~L~~~- 302 (418)
...++.+.++|..++..-+.-.|..++.+. ...++|||+.+.+.++.=...|.+.
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 122345566676666666666665555443 5568999999999888766666541
Q ss_pred ---------------------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChh
Q 014801 303 ---------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSAD 361 (418)
Q Consensus 303 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~ 361 (418)
+.++..+||+|++++|..++..|...+-.||+||++.++|+|+|++.+||.|++|.+..
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 23567799999999999999999998888999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHh
Q 014801 362 TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF 399 (418)
Q Consensus 362 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (418)
+|++|+||..|.|..|.+++|+.+.+.. +++.+++..
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eae-y~~~l~~~~ 566 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAE-YVNYLKKHH 566 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHH-HHHHHHhhc
Confidence 9999999999999999999999976655 777777653
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=6.3e-47 Score=370.88 Aligned_cols=333 Identities=20% Similarity=0.246 Sum_probs=255.2
Q ss_pred CccC--CCCCHHHHHHHHHC-CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 38 GFRD--FLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 38 ~~~~--~~l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
.|.. |..+..+...+... |+..++|.|.++++.++.|+++++++|||+|||++|+++++... ..+|||+|+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~------GiTLVISPL 509 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP------GITLVISPL 509 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC------CcEEEEeCH
Confidence 4664 45556666666543 88999999999999999999999999999999999999998652 279999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc-----CCCcEEEeccHHHHH---HHhcC-CC-CCCCccE
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN-----ECPQIVVGTPGRILA---LARDK-DL-SLKNVRH 184 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~T~~~l~~---~~~~~-~~-~~~~~~~ 184 (418)
++|+.++...+... +++...+.++.........+.. +..+|+++||+++.. +++.. .+ ....+.+
T Consensus 510 iSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 510 VSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 99998665555543 8889999998887766554432 557999999999852 22211 11 1345788
Q ss_pred EEEechhhhccC-CCCHHHHHHH---HhhCCCCccEEEEEecCCccHHHHHHHhcCCCeE-EEEcCCcccccccceEEEE
Q 014801 185 FILDECDKMLES-LDMRRDVQEI---FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPME-IYVDDEAKLTLHGLVQHYI 259 (418)
Q Consensus 185 iViDE~h~~~~~-~~~~~~~~~~---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 259 (418)
|||||||++..+ ++|+..+..+ ...+ ...+++++|||++..+...+...+..... +....... ..+ .+.
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R---pNL--~y~ 658 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR---PNL--WYS 658 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc---cce--EEE
Confidence 999999999875 4577766543 3333 45779999999998877655554433222 22211111 111 121
Q ss_pred Eec-hhhHHHHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec
Q 014801 260 KLS-ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 337 (418)
Q Consensus 260 ~~~-~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 337 (418)
... .......+..++... .+...||||.+++.++.++..|.+.|+.+..+|++|++.+|..+++.|.+|+++|||||.
T Consensus 659 Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd 738 (1195)
T PLN03137 659 VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV 738 (1195)
T ss_pred EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 122 222234455555433 456899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 338 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 338 ~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
++++|||+|++++||+++.|.|...|.|++||+||.|.+|.|++|+...+
T Consensus 739 AFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 739 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred hhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999999999999999998543
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.4e-48 Score=348.77 Aligned_cols=369 Identities=32% Similarity=0.535 Sum_probs=333.8
Q ss_pred CCCCCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 24 KPPRSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
.+.++....+-....|+++.|..+++..|..++|..|+++|..|+|.++.+.+++|.+..|+|||++|...+...+....
T Consensus 12 ~~eRs~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~ 91 (980)
T KOG4284|consen 12 RGERSIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS 91 (980)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc
Confidence 34566666666677899999999999999999999999999999999999999999999999999999999999888877
Q ss_pred CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 104 GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 104 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
..++.+|++||++++-|+.+.+.+++..+.|+++.++.||.....+...+... +|+|+||+++..+.+...++..+++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~--rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQT--RIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhc--eEEecCchHHHHHHHhcCCCcccee
Confidence 77899999999999999999999999988899999999999888777777654 8999999999999999999999999
Q ss_pred EEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech
Q 014801 184 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE 263 (418)
Q Consensus 184 ~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
++|+|||+.+.....|...+..++..++...|++++|||.|..+.+.+..++.+|..+....... .+-.+.+++.....
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s 248 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCS 248 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccC
Confidence 99999999999878899999999999999999999999999999999999999998887776654 34445555544332
Q ss_pred --------hhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEE
Q 014801 264 --------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 335 (418)
Q Consensus 264 --------~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 335 (418)
..+.+.|..++...+..++||||+....|+-++.+|..-|++|.++.|.|++.+|..+++.+++-.++|||+
T Consensus 249 ~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 249 PNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred CcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 136677888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHH
Q 014801 336 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 395 (418)
Q Consensus 336 t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 395 (418)
|+..++|+|.++++.||..+.|.+...|.+|+|||||+|..|..+.|+....+...+..+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999988775554444
No 33
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3e-49 Score=337.56 Aligned_cols=378 Identities=29% Similarity=0.517 Sum_probs=322.6
Q ss_pred CCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhcc--------C
Q 014801 29 QGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT--------E 100 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~--------~ 100 (418)
+..+|-+..+|.+.-.+..+++.|.+.|+..|+|+|.+.+|.+++|++.+=.|-||||||++|.++++-.. .
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 33444456679999999999999999999999999999999999999999999999999999888766321 1
Q ss_pred CCCCCeeEEEecCcHHHHHHHHHHHHHHhcc-----CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC
Q 014801 101 PNPGQVTALVLCHTRELAYQICHEFERFSTY-----LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK 175 (418)
Q Consensus 101 ~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 175 (418)
....+|-.|||||+++|+.|+.+.+..+... .|.++...+.||....++.+....+ .+|+|+||.+|..++.++
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKK 320 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHh
Confidence 2334567899999999999999998877644 3567888899999999999888887 699999999999999999
Q ss_pred CCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccce
Q 014801 176 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 255 (418)
Q Consensus 176 ~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
...++-++++.+||++++.+ .+|...+..++.++....|.+++|||+|..+..+++..+..|+.+.+.......+.-+.
T Consensus 321 ~~sLd~CRyL~lDEADRmiD-mGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMID-MGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred hccHHHHHHhhhhhHHHHhh-ccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 99999999999999999998 89999999999999999999999999999999999999999999888766554332211
Q ss_pred EEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEE
Q 014801 256 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 335 (418)
..-.+....+.-.+.+-+.+. ..+++|||.....+..+.++|--.|..++.+||+-++++|...++.|+.|+-+|||+
T Consensus 400 -evEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 400 -EVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred -HHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 111122222333333333322 368999999999999999999988999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 336 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 336 t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
|++.+.|+|+|++.|||.|+.|.....|++|+||.||.|++|.+..|+..+.+...+-.++..+...=+++|..+
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L 552 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVL 552 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHH
Confidence 999999999999999999999999999999999999999999999999988888888777777766666665544
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.3e-47 Score=357.95 Aligned_cols=318 Identities=21% Similarity=0.268 Sum_probs=245.4
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+..++|+|.++++.++.++++++++|||+|||++|+++++..- ..+|+++|+++|+.|+.+.++.+ +
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~------~~~lVi~P~~~L~~dq~~~l~~~-----g 75 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD------GITLVISPLISLMEDQVLQLKAS-----G 75 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC------CcEEEEecHHHHHHHHHHHHHHc-----C
Confidence 489999999999999999999999999999999999999987531 26899999999999998888764 7
Q ss_pred ceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHh-cCCC-CCCCccEEEEechhhhccC-CCCHHHHHHH--
Q 014801 135 IKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALAR-DKDL-SLKNVRHFILDECDKMLES-LDMRRDVQEI-- 206 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~-~~~~-~~~~~~~iViDE~h~~~~~-~~~~~~~~~~-- 206 (418)
+.+..+.++........ .+..+..+|+++||+.+....+ ...+ ...++++|||||||.+..+ +++...+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 88888888766553332 2345667999999998753210 0111 4578899999999998764 3455555443
Q ss_pred -HhhCCCCccEEEEEecCCccHHHHHHHhcC--CCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHh-hcCCCeE
Q 014801 207 -FKMTPHDKQVMMFSATLSKEIRPVCKKFMQ--DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-ALDFNQV 282 (418)
Q Consensus 207 -~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 282 (418)
.... +..+++++|||++......+...+. ++..... .... ..+ ...+..........+..++. ..++..+
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~r---~nl-~~~v~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFDR---PNL-YYEVRRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCCC---CCc-EEEEEeCCccHHHHHHHHHHHhcCCCce
Confidence 3333 4577999999999876655554432 3322221 1111 111 11111122133344455554 4455677
Q ss_pred EEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhh
Q 014801 283 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 362 (418)
Q Consensus 283 lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~ 362 (418)
||||++++.++.+++.|.+.++.+..+|++++..+|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.|...
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCceeEEEEecCCCcH
Q 014801 363 YLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 363 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|.||+||+||.|.+|.+++++.+.+..
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHH
Confidence 999999999999999999999865443
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-47 Score=377.97 Aligned_cols=359 Identities=21% Similarity=0.294 Sum_probs=266.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.|+++++++.+++.+.+.|+.+|+|+|.++++. +..++++++++|||+|||+++.+++++.+..+ .+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~---~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG---GKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC---CcEEEEeChHH
Confidence 578889999999999999999999999999998 67899999999999999999999999888643 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|..+.|+++.. . ++++..++|+...... .+ +..+|+|+||+++..++++....+++++++|+||+|.+.+
T Consensus 79 La~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d- 151 (737)
T PRK02362 79 LASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS- 151 (737)
T ss_pred HHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC-
Confidence 99999999998653 3 7899999997654321 12 2359999999999999987666788999999999999876
Q ss_pred CCCHHHHHHHHh---hCCCCccEEEEEecCCccHHHHHHHhcCC-------CeEEE--EcCCcccccccceEEEEEech-
Q 014801 197 LDMRRDVQEIFK---MTPHDKQVMMFSATLSKEIRPVCKKFMQD-------PMEIY--VDDEAKLTLHGLVQHYIKLSE- 263 (418)
Q Consensus 197 ~~~~~~~~~~~~---~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~- 263 (418)
.+++..+..+.. ......|++++|||+++. ..+...+... |.... +.......... .........
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~ 229 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSK 229 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccc
Confidence 466666555443 334678999999999863 3333322211 11100 00000000000 000010000
Q ss_pred hhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC------------------------------------CCCeE
Q 014801 264 LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------------------------------------NFPSI 307 (418)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~------------------------------------~~~~~ 307 (418)
......+.+.+. .++++||||++++.++.++..|... ...+.
T Consensus 230 ~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 230 DDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred hHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 112222222222 5689999999999999988877542 13578
Q ss_pred EecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec-----CCCChhhhhhhcccccCCCCc--
Q 014801 308 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-----MPDSADTYLHRVGRAGRFGTK-- 376 (418)
Q Consensus 308 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~-- 376 (418)
.+|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. |+ .|.+..+|.||+|||||.|..
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999986 54 578899999999999999865
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhccCccccCccccc
Q 014801 377 GLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (418)
|.+++++...++ ..+.+++++..+..++.+.+.+
T Consensus 388 G~~ii~~~~~~~--~~~~~~~~l~~~~~~i~S~l~~ 421 (737)
T PRK02362 388 GEAVLLAKSYDE--LDELFERYIWADPEDVRSKLAT 421 (737)
T ss_pred ceEEEEecCchh--HHHHHHHHHhCCCCceeecCCC
Confidence 888888875432 2344556666667777666654
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-45 Score=358.31 Aligned_cols=324 Identities=18% Similarity=0.262 Sum_probs=251.1
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 46 PELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 46 ~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
....+.|.. .|+..++|+|.++++.++.|+++++++|||+|||++|+++++.... .+|+++|+++|+.|+.+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g------~tlVisPl~sL~~dqv~~ 84 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDG------LTLVVSPLISLMKDQVDQ 84 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCC------CEEEEecHHHHHHHHHHH
Confidence 333444443 3899999999999999999999999999999999999998885421 689999999999999888
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCH
Q 014801 125 FERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMR 200 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~ 200 (418)
++.. ++....+.++........ .+..+..+++++||+.+........+...++++|||||||++..+ +++.
T Consensus 85 l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 85 LLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 8765 677777777766554433 234566799999999986421112233457899999999998864 4455
Q ss_pred HHHHH---HHhhCCCCccEEEEEecCCccHHHHHHHhc--CCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHh
Q 014801 201 RDVQE---IFKMTPHDKQVMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 275 (418)
Q Consensus 201 ~~~~~---~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (418)
..+.. +.... +..+++++|||++......+...+ .++... ....... .+ .+...........+..++.
T Consensus 160 ~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~---nl--~~~v~~~~~~~~~l~~~l~ 232 (607)
T PRK11057 160 PEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRP---NI--RYTLVEKFKPLDQLMRYVQ 232 (607)
T ss_pred HHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCC---cc--eeeeeeccchHHHHHHHHH
Confidence 55433 33333 457799999999987665444433 233322 2221111 11 1222222233455666666
Q ss_pred hcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec
Q 014801 276 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 355 (418)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~ 355 (418)
...+.++||||+++++++.+++.|.+.++.+..+|++++..+|..+++.|.+|+++|||||+++++|+|+|++++||+++
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 67778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 356 MPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
.|.|...|.|++||+||.|.+|.+++++++.+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 99999999999999999999999999999654
No 37
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-47 Score=339.91 Aligned_cols=363 Identities=31% Similarity=0.528 Sum_probs=289.3
Q ss_pred ccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC-CcEEEEccCCCchhhHHHHHhhhccCCCC-------
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP------- 103 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~------- 103 (418)
...+-+.|..++++.+++++|...||..|+++|.-.++....| .+++=.|.||||||++|-++++..+.+..
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 4445567999999999999999999999999999999999998 78999999999999999999998553322
Q ss_pred ----CCee--EEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC
Q 014801 104 ----GQVT--ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL 177 (418)
Q Consensus 104 ----~~~~--~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 177 (418)
..++ .||++||++|+.|+...+...+... ++++..++||.....+...+.. .++|+|+||++|+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhh
Confidence 1234 8999999999999999999988765 9999999999998877777766 579999999999999887654
Q ss_pred ---CCCCccEEEEechhhhccCCCCHHHHHHHHhhCC-----CCccEEEEEecCCcc---------------------HH
Q 014801 178 ---SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-----HDKQVMMFSATLSKE---------------------IR 228 (418)
Q Consensus 178 ---~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~---------------------~~ 228 (418)
++..++++|+||++++.. .+....+..++..+. ...|.+.+|||+.-. +.
T Consensus 334 ~l~~~k~vkcLVlDEaDRmve-kghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 334 HLGNFKKVKCLVLDEADRMVE-KGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhhceEEEEccHHHHhh-hccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 467889999999999998 577777777776654 346999999998422 11
Q ss_pred HHHHH--hcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCe
Q 014801 229 PVCKK--FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS 306 (418)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~ 306 (418)
.++.. +...|..+....+. .....+....+.|+..++.-.+.-++.. ..+++|||||+++.+..+.-.|..++++.
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred HHHHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 12222 22333332222221 1222233333334333333322222222 34899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 307 ICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
..+|+.|.+.+|...++.|.+..-.|||||+++++|+|+|++.|||||..|.+..-|++|.||..|.+..|..++++++.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CcHHHHHHHHHHhc
Q 014801 387 SDSDILNQVQARFE 400 (418)
Q Consensus 387 ~~~~~~~~~~~~~~ 400 (418)
+ ...+.++-+-++
T Consensus 571 e-~~~~~KL~ktL~ 583 (731)
T KOG0347|consen 571 E-VGPLKKLCKTLK 583 (731)
T ss_pred H-hHHHHHHHHHHh
Confidence 6 544555555444
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-46 Score=354.11 Aligned_cols=372 Identities=31% Similarity=0.536 Sum_probs=329.0
Q ss_pred cccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-----CCC
Q 014801 31 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQ 105 (418)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-----~~~ 105 (418)
.-+.+..+|.+.|++..++..+++.|+..++|+|.+|||++++|+++|-+|-||||||++|+++++++.... ..+
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 344556789999999999999999999999999999999999999999999999999999999999776432 246
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCC---CCCc
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS---LKNV 182 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~---~~~~ 182 (418)
|-++|++||++|+.|+.+++++|.+.. ++++..++|+...+.+...+..+ ..|+||||.++..++-.+.-. +.++
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCcccccccc
Confidence 789999999999999999999999886 99999999999999999999998 799999999998866544333 5555
Q ss_pred cEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec
Q 014801 183 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 262 (418)
Q Consensus 183 ~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
.++|+||++.+.. .+|.+....++..++...|.+++|||++..+..++...+..|+.+.+... ...-+.+.+.+..+.
T Consensus 517 t~lv~deaDrmfd-mgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~-svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFD-MGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR-SVVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhhe-eccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc-eeEeccceEEEEEec
Confidence 6999999999995 89998888899999999999999999999999999999999999777744 345566667776676
Q ss_pred -hhhHHHHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccc
Q 014801 263 -ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 340 (418)
Q Consensus 263 -~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~ 340 (418)
+.++...|..++... ...++||||.+.+.|..+.+.|.+.|+.+..+||+.++.+|...++.|++|.+++||+|+.++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 888888888888765 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 341 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+|+|+..+..||+|+.|.....|++|.||+||.|+.|.+++|+.+ ++..+...+.+.++..=.++|
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999997 666666666666655444444
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=325.05 Aligned_cols=361 Identities=26% Similarity=0.375 Sum_probs=290.1
Q ss_pred CccCCCCCHHHHHH----------HHHCCCCCCcHHHHHhHHhhhc---------CCcEEEEccCCCchhhHHHHHhhhc
Q 014801 38 GFRDFLLKPELLRA----------IVDSGFEHPSEVQHECIPQAIL---------GMDVICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 38 ~~~~~~l~~~~~~~----------l~~~~~~~l~~~Q~~~~~~~~~---------~~~~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
.|...+.++++... +.++++..+.|+|..+++.++. .++++|.||||||||++|.+++.+.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 36666777766655 8889999999999999999864 4689999999999999999999999
Q ss_pred cCCCC-CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCC----cEEEeccHHHHHHHh
Q 014801 99 TEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP----QIVVGTPGRILALAR 173 (418)
Q Consensus 99 ~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~v~T~~~l~~~~~ 173 (418)
+...+ ...++++|+|+++|+.|+++.|.++.... ++.|+.+.|..+.+.....+.+..+ ||+|+||++|...++
T Consensus 208 L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 87764 44689999999999999999999998887 8999999999888888888877656 999999999999888
Q ss_pred -cCCCCCCCccEEEEechhhhccCCCCHHHHHHHHh----------------------------------hCCCCccEEE
Q 014801 174 -DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK----------------------------------MTPHDKQVMM 218 (418)
Q Consensus 174 -~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~i~ 218 (418)
...+.+++++++||||++++.+ ..|..++-.+.. ........+.
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~-qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLD-QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred CCCCcchhhceEEEechHHHHHH-HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 5678899999999999999986 233322222111 1112224677
Q ss_pred EEecCCccHHHHHHHhcCCCeEEEEcC---CcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 014801 219 FSATLSKEIRPVCKKFMQDPMEIYVDD---EAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 295 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~ 295 (418)
.|||+...-..+...-...|....+.. ........+....+.+....+.-.+..++......++|+|+++.+.+..+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl 445 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL 445 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHH
Confidence 888887766666666666664433332 11122233444444455556667777888888889999999999999999
Q ss_pred HHHHH----hCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhccccc
Q 014801 296 NKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 371 (418)
Q Consensus 296 ~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (418)
+..|+ ....++..+.|.++...|...++.|..|++++|||++++++|+|+-+++.||.|++|.+...|++|+||.+
T Consensus 446 ~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 446 AHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred HHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccc
Confidence 99887 23566777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEecCCCcHHHHHHHHHHhc
Q 014801 372 RFGTKGLAITFVSSASDSDILNQVQARFE 400 (418)
Q Consensus 372 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (418)
|.|+.|.++.+.+..+...+.+.+.+...
T Consensus 526 RAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 526 RAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999997666666666665533
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.9e-45 Score=356.88 Aligned_cols=316 Identities=22% Similarity=0.311 Sum_probs=251.9
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+.+++|.|.++++.++.|+++++++|||+|||++|+++++... + .++|++|+++|+.|+.+.++.+ +
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-----g-~~lVisPl~sL~~dq~~~l~~~-----g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-----G-LTVVISPLISLMKDQVDQLRAA-----G 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-----C-cEEEEcCCHHHHHHHHHHHHHc-----C
Confidence 489999999999999999999999999999999999999887532 1 6899999999999998888775 7
Q ss_pred ceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCHHHHHHH---H
Q 014801 135 IKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEI---F 207 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~~~~~~~---~ 207 (418)
+.+..++++......... +..+..+|+++||+++........+...++++|||||||++..+ +++...+..+ .
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 888888888776654433 34566799999999986533323344568999999999998764 4566655444 3
Q ss_pred hhCCCCccEEEEEecCCccHHHHHHHhcCCCe-EEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEe
Q 014801 208 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFV 286 (418)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~ 286 (418)
...+. .+++++|||++......+..++.... ......... ..+ .+.......+...+.+++....+.++||||
T Consensus 158 ~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~ 231 (591)
T TIGR01389 158 ERFPQ-VPRIALTATADAETRQDIRELLRLADANEFITSFDR---PNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYA 231 (591)
T ss_pred HhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC---CCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEE
Confidence 34443 44999999999887766666554221 112221111 111 222222334556667777776678999999
Q ss_pred CCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhh
Q 014801 287 KSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 366 (418)
Q Consensus 287 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (418)
++++.++.+++.|...++++..+|++|+.++|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.|...|.|+
T Consensus 232 ~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~ 311 (591)
T TIGR01389 232 SSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQE 311 (591)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEecCCC
Q 014801 367 VGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 367 ~GR~~R~~~~g~~~~~~~~~~ 387 (418)
+||+||.|.+|.+++++...+
T Consensus 312 ~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 312 AGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred hccccCCCCCceEEEecCHHH
Confidence 999999999999998888543
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-45 Score=363.04 Aligned_cols=354 Identities=19% Similarity=0.256 Sum_probs=263.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.|+++++++.+.+.+.+.|+.+|+|+|.++++. +..++++++++|||+|||+++.+++++.+.... .++|+++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~--~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG--GKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC--CeEEEEeChHH
Confidence 477889999999999999999999999999986 788999999999999999999999998765432 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+.+.+..+.. . ++++..++|+...... .+ +.++|+|+||+++..++++....++++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~- 152 (720)
T PRK00254 80 LAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS- 152 (720)
T ss_pred HHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC-
Confidence 99999999987643 3 7899999998654322 12 2369999999999999887766789999999999999876
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccc-c-ceEEEEEech-------hhHH
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH-G-LVQHYIKLSE-------LEKN 267 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-------~~~~ 267 (418)
......+..+........|++++|||+++. ..++. |+...... ......... . ..+.+..... ....
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV--SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc--CCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 567778888888888889999999999863 44444 44322110 000000000 0 0001111111 1111
Q ss_pred HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHh---------------------------------CCCCeEEecCCCC
Q 014801 268 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE---------------------------------CNFPSICIHSGMS 314 (418)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~---------------------------------~~~~~~~~~~~~~ 314 (418)
..+.+.+. .++++||||++++.++.++..|.+ ....+..+|++++
T Consensus 229 ~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 229 SLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 22333333 357999999999999887766532 1235889999999
Q ss_pred HHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE-------ecCC-CChhhhhhhcccccCCC--CceeEEEEec
Q 014801 315 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------YDMP-DSADTYLHRVGRAGRFG--TKGLAITFVS 384 (418)
Q Consensus 315 ~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~-------~~~~-~s~~~~~Q~~GR~~R~~--~~g~~~~~~~ 384 (418)
+++|..+++.|++|.++|||||+++++|+|+|..++||. ++.+ .+..+|.||+|||||.| ..|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999884 2322 35678999999999975 5689998887
Q ss_pred CCCcHHHHHHHHHHhccCccccCcc
Q 014801 385 SASDSDILNQVQARFEVDIKELPEQ 409 (418)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
..+...+ +++++..+.+.+.+.
T Consensus 387 ~~~~~~~---~~~~~~~~pe~l~s~ 408 (720)
T PRK00254 387 TEEPSKL---MERYIFGKPEKLFSM 408 (720)
T ss_pred CcchHHH---HHHHHhCCchhhhcc
Confidence 5433333 344444444444333
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.3e-44 Score=361.87 Aligned_cols=355 Identities=23% Similarity=0.305 Sum_probs=253.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC------CCCeeEEEecCcHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTREL 117 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~------~~~~~~lii~P~~~l 117 (418)
+++.+.+.+.. ++..|+|+|.++++.+++|+++++++|||||||++++++++..+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67888887766 68899999999999999999999999999999999999999776421 234579999999999
Q ss_pred HHHHHHHHHH-------Hh----ccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC--CCCCccE
Q 014801 118 AYQICHEFER-------FS----TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRH 184 (418)
Q Consensus 118 ~~q~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~ 184 (418)
++|+.+.+.. +. ...+++++...+|+.....+...+.+. ++|+|+||+++..++..... .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~-p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP-PHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC-CCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 9999886653 22 122367889999998877666555544 69999999999887765443 4789999
Q ss_pred EEEechhhhccCCCCHH----HHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCC-------CeEEEEcCCcccccc-
Q 014801 185 FILDECDKMLESLDMRR----DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-------PMEIYVDDEAKLTLH- 252 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~----~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~- 252 (418)
||+||+|.+.+ ..... .+.++....+...|++++|||+++. ...+..+... +..+. .........
T Consensus 176 VVIDE~H~l~~-~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i 252 (876)
T PRK13767 176 VIVDEIHSLAE-NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDI 252 (876)
T ss_pred EEEechhhhcc-CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceE
Confidence 99999999886 23332 3444444455678999999999763 3333332221 11111 111000000
Q ss_pred ---cceEEEEEechhh----HHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC------CCCeEEecCCCCHHHHH
Q 014801 253 ---GLVQHYIKLSELE----KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERL 319 (418)
Q Consensus 253 ---~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~~~~~~r~ 319 (418)
............. ....+..++. .++++||||++++.++.++..|.+. +..+..+||++++++|.
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 0000000111111 1122333332 3578999999999999999999863 46789999999999999
Q ss_pred HHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC-CCceeEEEEecCCCc-HHHHHHHHH
Q 014801 320 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVSSASD-SDILNQVQA 397 (418)
Q Consensus 320 ~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~~~~~~-~~~~~~~~~ 397 (418)
.+++.|++|++++||||+++++|+|+|++++||+++.|.|...|+||+||+||. |..+...++....++ .+.....+.
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~ 410 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKK 410 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 444444444443333 233333344
Q ss_pred HhccCccc
Q 014801 398 RFEVDIKE 405 (418)
Q Consensus 398 ~~~~~~~~ 405 (418)
..+..++.
T Consensus 411 ~~~~~ie~ 418 (876)
T PRK13767 411 AREGKIDR 418 (876)
T ss_pred HHhCCCCC
Confidence 44444444
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.1e-44 Score=344.26 Aligned_cols=356 Identities=26% Similarity=0.323 Sum_probs=277.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-----CCCeeEEEecCcHHH
Q 014801 43 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTREL 117 (418)
Q Consensus 43 ~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-----~~~~~~lii~P~~~l 117 (418)
-+++.+++++... +.+||+.|.+|++.+.+|++++|.||||||||.+++++++..+... ..+..+|||+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3789999999988 9999999999999999999999999999999999999999987665 234689999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC--CCCCCccEEEEechhhhcc
Q 014801 118 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDE~h~~~~ 195 (418)
.+.+.++++.+.... |+++.+-+|+++..++.....+. +||+++|||.|.-++...+ ..+.+++++||||+|.+.+
T Consensus 86 n~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~P-PdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 86 NNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNP-PHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCC-CcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 999999999998877 99999999998877766655554 7999999999988777543 3488999999999999986
Q ss_pred C---CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCC--eEEEEcCCc-ccccccceEE--EE--Eechhh
Q 014801 196 S---LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP--MEIYVDDEA-KLTLHGLVQH--YI--KLSELE 265 (418)
Q Consensus 196 ~---~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~--~~--~~~~~~ 265 (418)
. .-..-.++++....+ ..|.|++|||..+. ...++.+.+.. ..+...... .....-+... .. ......
T Consensus 164 sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 164 SKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred cccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHH
Confidence 3 112334566666666 89999999999854 55555555543 333222111 1111100000 00 011122
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCC-CCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCC
Q 014801 266 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 344 (418)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d 344 (418)
....+.++++.+ ..+|||+|++..++.++..|++.+ ..+..+||+++.+.|..+++.|++|+.+++|||+.++-|||
T Consensus 242 ~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 242 LYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 345555555555 489999999999999999999886 88999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhhhhhcccccC-CCCceeEEEEecCCCcH-HHHHHHHHHhccCccc
Q 014801 345 IERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFVSSASDS-DILNQVQARFEVDIKE 405 (418)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (418)
+-+++.||+++.|.+...+.||+||+|+ .+.....+++....+|. +..-..+..++..+..
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~ 382 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLER 382 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999996 56666666666643222 4445556666666553
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-44 Score=323.22 Aligned_cols=382 Identities=31% Similarity=0.412 Sum_probs=309.9
Q ss_pred CCCCCcccccCCCccC----CCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 26 PRSQGYVGIHSSGFRD----FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 26 ~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
...+...+.+..+|.+ +..++.+++.+...+|..|+|.|.+|++.++.+.+++.|+|||+|||++|.++++.++..
T Consensus 121 ~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~ 200 (593)
T KOG0344|consen 121 NVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKD 200 (593)
T ss_pred eccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHH
Confidence 3444444555556665 667889999999999999999999999999999999999999999999999999988743
Q ss_pred -----CCCCeeEEEecCcHHHHHHHHHHHHHHh--ccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc
Q 014801 102 -----NPGQVTALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD 174 (418)
Q Consensus 102 -----~~~~~~~lii~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~ 174 (418)
+..+.+++|+.|+++|+.|.++++.++. ... +.+...+............+....+++++.||..+..++..
T Consensus 201 ~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~ 279 (593)
T KOG0344|consen 201 LSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL 279 (593)
T ss_pred hhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC
Confidence 2456789999999999999999999987 332 33433333332222222223333469999999999988887
Q ss_pred CC--CCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC-CCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCccccc
Q 014801 175 KD--LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 251 (418)
Q Consensus 175 ~~--~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
.. +++.++.++|+||++.+.....+...+..++..+. ++..+-++|||.+.+++.|+.....++..+.++..... .
T Consensus 280 ~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa-~ 358 (593)
T KOG0344|consen 280 GKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA-N 358 (593)
T ss_pred CCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH-h
Confidence 65 67899999999999999884367777777776554 45667789999999999999999999888877765443 2
Q ss_pred ccceEEE-EEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH-HhCCCCeEEecCCCCHHHHHHHHHhhhcCC
Q 014801 252 HGLVQHY-IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL-VECNFPSICIHSGMSQEERLTRYKGFKEGN 329 (418)
Q Consensus 252 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 329 (418)
..+.+.. +..+...+.-.+..++...-..+++||+.+.+.|..+...| .-.++++.++||+.+..+|...++.|+.|+
T Consensus 359 ~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 359 ETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 3333443 34455667788888888887789999999999999999999 555899999999999999999999999999
Q ss_pred ccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcc
Q 014801 330 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 409 (418)
Q Consensus 330 ~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
+.|||||+.+++|+|+.+++.||.||.|.+..+|++|+||.||.|+.|.++.|+. +.+..+++.+..-.+..=-++|++
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt-d~d~~~ir~iae~~~~sG~evpe~ 517 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT-DQDMPRIRSIAEVMEQSGCEVPEK 517 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec-cccchhhhhHHHHHHHcCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999 577777777766655554555554
Q ss_pred c
Q 014801 410 I 410 (418)
Q Consensus 410 ~ 410 (418)
+
T Consensus 518 ~ 518 (593)
T KOG0344|consen 518 I 518 (593)
T ss_pred H
Confidence 4
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-43 Score=349.82 Aligned_cols=353 Identities=19% Similarity=0.271 Sum_probs=254.6
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
.|.++++++++++.+...++. |+++|.++++.+.+++++++++|||+|||+++.+++++.+..+. ++++++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~---k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGL---KSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCC---cEEEEechHHH
Confidence 467889999999999998885 99999999999999999999999999999999999888776532 79999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCC
Q 014801 118 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 197 (418)
Q Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~ 197 (418)
+.|.++.++++.. . +.++....|+...... .+. ..+|+|+||+++..++++....+.+++++|+||+|.+.+ .
T Consensus 78 a~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~~~--~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d-~ 150 (674)
T PRK01172 78 AMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--FIK--RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD-E 150 (674)
T ss_pred HHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--hhc--cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC-C
Confidence 9999999988643 3 7888888887654322 122 359999999999999888776789999999999999875 4
Q ss_pred CCHHHHHHHH---hhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCccc-cccc----ceEEEEEechhhHHHH
Q 014801 198 DMRRDVQEIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL-TLHG----LVQHYIKLSELEKNRK 269 (418)
Q Consensus 198 ~~~~~~~~~~---~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~ 269 (418)
.+...+..+. .......|++++|||+++. ..+.. |+..... ...... .... ....+........ ..
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~---~~~~r~vpl~~~i~~~~~~~~~~~~~~~-~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLI---KSNFRPVPLKLGILYRKRLILDGYERSQ-VD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCcc---CCCCCCCCeEEEEEecCeeeeccccccc-cc
Confidence 5555554443 3445678999999999763 44443 3332111 000000 0000 0000110000001 11
Q ss_pred HHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhC-------------------------CCCeEEecCCCCHHHHHHHH
Q 014801 270 LNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVEC-------------------------NFPSICIHSGMSQEERLTRY 322 (418)
Q Consensus 270 l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~~~ 322 (418)
+..++.. ..++++||||++++.++.++..|.+. ...+..+|+++++++|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 2222222 24689999999999999999888653 12467899999999999999
Q ss_pred HhhhcCCccEEEEecccccCCCCCCCCEEEEec---------CCCChhhhhhhcccccCCCC--ceeEEEEecCCCcHHH
Q 014801 323 KGFKEGNKRILVATDLVGRGIDIERVNIVINYD---------MPDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDI 391 (418)
Q Consensus 323 ~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~---------~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~ 391 (418)
+.|++|.++|||||+++++|+|+|...+|| .+ .+.+..+|.||+|||||.|. .|.+++++...++..
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~- 382 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYD- 382 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHH-
Confidence 999999999999999999999999865554 33 24578899999999999884 577888876544333
Q ss_pred HHHHHHHhccCccccCcccc
Q 014801 392 LNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~ 411 (418)
.+++.+..+..++.+.+.
T Consensus 383 --~~~~~l~~~~~pi~S~l~ 400 (674)
T PRK01172 383 --AAKKYLSGEPEPVISYMG 400 (674)
T ss_pred --HHHHHHcCCCCceeecCC
Confidence 344445445555444443
No 46
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-44 Score=308.71 Aligned_cols=364 Identities=31% Similarity=0.497 Sum_probs=319.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC-CCeeEEEecCc
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHT 114 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-~~~~~lii~P~ 114 (418)
...|..+||+..+.+++.+.||..|+|.|++-+|.++++++++-.+-||||||.+++++++..+.... .+.+++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 57899999999999999999999999999999999999999999999999999999999998875433 45689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
++|+.|..+..+.++... +.+...+.|+...+++...+..+ +||+++||..+..+.-.-.+.++.+.+||+||++.+.
T Consensus 100 reLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 999999999999998876 88999999999988888877655 6999999999988766666889999999999999999
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHH
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 274 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (418)
. ++|...+..++...+...|.+++|||+|..+..+++.=..+|..+..+.+.. .-..+...+..+...++...|..++
T Consensus 178 e-mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetk-ise~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 178 E-MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETK-ISELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred h-hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhh-cchhhhhheeeeccHHHHHHHHHHH
Confidence 8 7999999999999999999999999999988888887777887777555433 2233444566667777777777777
Q ss_pred hhcC-CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE
Q 014801 275 DALD-FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 353 (418)
Q Consensus 275 ~~~~-~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~ 353 (418)
.... ..+++|||++..+++.+...|++.|+.+..++|.+++..|..-+..|.-+...++|.|+..++|+|+|-++.||.
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 6653 367999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCcc
Q 014801 354 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 404 (418)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (418)
|+.|.+..-|.+|+||+.|.|+.|+.|.++.+++..+ +-.+...+...+.
T Consensus 336 yd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~y-l~DL~lflgr~~~ 385 (529)
T KOG0337|consen 336 YDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPY-LLDLQLFLGRPLI 385 (529)
T ss_pred ccCCCCCceEEEEecchhhccccceEEEEEecccchh-hhhhhhhcCCcee
Confidence 9999999999999999999999999999999655554 4455555555443
No 47
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-42 Score=303.93 Aligned_cols=323 Identities=20% Similarity=0.317 Sum_probs=249.2
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
+..++|.||.......+.+ +++|+.|||-|||+++++.+...+...++ ++|+++||+.|+.|.++.+++..... .-
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~ 87 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIP-ED 87 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCC-hh
Confidence 3458899999998887776 99999999999999999988888776654 79999999999999999999987543 55
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCcc
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 215 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 215 (418)
.+..++|....+.+...+..+ +|+|+||+.+.+-+..+.+++.++.++||||||+..+++.+......+.. ..+++.
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~--kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~~~ 164 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKK--KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKNPL 164 (542)
T ss_pred heeeecCCCChHHHHHHHhhC--CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-hccCce
Confidence 788899999988888888876 99999999999999999999999999999999999986665555554444 445677
Q ss_pred EEEEEecCCccHHHHH---HHhcCCCeEEEEcCCcccc--cccceEEEEEechh--------------------------
Q 014801 216 VMMFSATLSKEIRPVC---KKFMQDPMEIYVDDEAKLT--LHGLVQHYIKLSEL-------------------------- 264 (418)
Q Consensus 216 ~i~lSAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------- 264 (418)
+++|||||.++...+. +.+.-..+.+....+.... .......++.+..+
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999987755433 3332222222211100000 00000011111000
Q ss_pred --------------------------------------------------------------------------------
Q 014801 265 -------------------------------------------------------------------------------- 264 (418)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (418)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence
Q ss_pred -----------------------hHH----HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeE-Ee-------
Q 014801 265 -----------------------EKN----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CI------- 309 (418)
Q Consensus 265 -----------------------~~~----~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~-~~------- 309 (418)
.++ +.+.+.++...+.++|||++.++.++.+...|.+.+..+. .+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 001 1122222223456899999999999999999999988774 22
Q ss_pred -cCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 310 -HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 310 -~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
..||++.++.++++.|++|+++|||||++.++|+|+|.++.||+|++..|+-.++||.||+||. ++|.+++++...
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2479999999999999999999999999999999999999999999999999999999999996 889999998866
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.2e-41 Score=338.42 Aligned_cols=322 Identities=21% Similarity=0.211 Sum_probs=245.7
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 44 LKPELLRAIVDS-GFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 44 l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.+....+.+... ++ +|++.|.++++.+..+ ++.+++||||+|||.+++.+++..+..+ .++++++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHH
Confidence 445555555554 66 6999999999999884 6899999999999999999988877654 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
|+.|+++.++++.... ++++..++|+.+..+... .+..+..+|+|+||..+ ...+.+.+++++||||+|++
T Consensus 512 LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 512 LAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc
Confidence 9999999999987766 788888888766544433 34556689999999533 24567889999999999986
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHH
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 273 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (418)
.. .....+......+++++||||+.+...........++..+...+.... .+...+...........+...
T Consensus 586 gv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~---~V~t~v~~~~~~~i~~~i~~e 656 (926)
T TIGR00580 586 GV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL---PVRTFVMEYDPELVREAIRRE 656 (926)
T ss_pred ch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc---ceEEEEEecCHHHHHHHHHHH
Confidence 32 223334445567899999999877655544444445444433222211 122222222211111111111
Q ss_pred HhhcCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEE
Q 014801 274 LDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 351 (418)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~v 351 (418)
+ ..+++++|||++.+.++.+++.|.+. +.++..+||+|++.+|..+++.|.+|+++|||||+++++|+|+|++++|
T Consensus 657 l--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 657 L--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred H--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEE
Confidence 1 24689999999999999999999885 6789999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-ChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 352 INYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 352 i~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
|+++.+. +..+|.|++||+||.|+.|.|++++...
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9998864 6789999999999999999999998754
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-40 Score=325.65 Aligned_cols=319 Identities=20% Similarity=0.279 Sum_probs=235.1
Q ss_pred HHHHHHH-HCCCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 47 ELLRAIV-DSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 47 ~~~~~l~-~~~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
.+.+.+. ..+| +|++.|+++++.+..+ .+.+++||||||||.+++++++..+..+ .+++|++||++|+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA~ 324 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILAE 324 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHHH
Confidence 3333333 3355 7999999999999885 4799999999999999999998887643 38999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 120 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 120 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+++.++++.... ++++..++|+.+...+.. .+.++..+|+|+||..+.. .+.+.+++++|+||+|.+..
T Consensus 325 Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~- 397 (681)
T PRK10917 325 QHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV- 397 (681)
T ss_pred HHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH-
Confidence 9999999998776 899999999988655444 3455668999999987742 34678999999999998743
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (418)
..... +......+++++||||+.+...... ...+.....+.. .......+...+.. .......+..+...
T Consensus 398 -~qr~~----l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~-~p~~r~~i~~~~~~--~~~~~~~~~~i~~~ 467 (681)
T PRK10917 398 -EQRLA----LREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDE-LPPGRKPITTVVIP--DSRRDEVYERIREE 467 (681)
T ss_pred -HHHHH----HHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEec-CCCCCCCcEEEEeC--cccHHHHHHHHHHH
Confidence 22222 2223446789999999876543322 222221111111 11111122222222 22222222222222
Q ss_pred -cCCCeEEEEeCCch--------hHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCC
Q 014801 277 -LDFNQVVIFVKSVS--------RAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 345 (418)
Q Consensus 277 -~~~~~~lif~~~~~--------~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~ 345 (418)
..+++++|||+..+ .++.+++.|.+. ++++..+||+|+..+|..+++.|++|+++|||||+++++|+|+
T Consensus 468 ~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 468 IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 24579999999654 345667777654 4689999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCC-ChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 346 ERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 346 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
|++++||+++.+. +...+.|++||+||.|.+|.|++++...
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999886 6788999999999999999999999533
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-40 Score=323.77 Aligned_cols=317 Identities=21% Similarity=0.268 Sum_probs=234.0
Q ss_pred HHHHHHHCCCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 48 LLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 48 ~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
+.+.+...+| +|++.|+++++.+..+ .+.+++||||||||.+++++++..+..+. ++++++||++|+.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~---qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY---QVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEECCHHHHHHHH
Confidence 3445555567 8999999999999875 25899999999999999998888876533 899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHH---HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC
Q 014801 122 CHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
++.++++.... ++++..++|+.....+. ..+.++..+|+|+||..+.. ...+.+++++|+||+|.+.. .
T Consensus 301 ~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 301 YNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred HHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--H
Confidence 99999988776 89999999998766543 33455668999999987753 35678999999999998643 2
Q ss_pred CHHHHHHHHhhCC--CCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh
Q 014801 199 MRRDVQEIFKMTP--HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 276 (418)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (418)
....+. .... ..+++++||||+.+...... ...+....... ........+..... ........+..+...
T Consensus 373 qr~~l~---~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~-~~p~~r~~i~~~~~--~~~~~~~~~~~i~~~ 444 (630)
T TIGR00643 373 QRKKLR---EKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIID-ELPPGRKPITTVLI--KHDEKDIVYEFIEEE 444 (630)
T ss_pred HHHHHH---HhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeec-cCCCCCCceEEEEe--CcchHHHHHHHHHHH
Confidence 222222 2221 25789999999876433222 22221111111 11111112222222 222222333333333
Q ss_pred c-CCCeEEEEeCCch--------hHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCC
Q 014801 277 L-DFNQVVIFVKSVS--------RAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 345 (418)
Q Consensus 277 ~-~~~~~lif~~~~~--------~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~ 345 (418)
. .+++++|||+..+ .++.+++.|.+. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 445 l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi 524 (630)
T TIGR00643 445 IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV 524 (630)
T ss_pred HHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc
Confidence 2 4678999998763 455666777653 6789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCC-ChhhhhhhcccccCCCCceeEEEEec
Q 014801 346 ERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 346 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
|++++||+++.+. +...+.|++||+||.|.+|.|++++.
T Consensus 525 P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 525 PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999885 68899999999999999999999994
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.6e-40 Score=334.85 Aligned_cols=318 Identities=19% Similarity=0.192 Sum_probs=245.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHH
Q 014801 47 ELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 120 (418)
Q Consensus 47 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q 120 (418)
+..+.....+| +|++.|.++++.++.+ .+.+++|+||+|||.+++.++...+.. +.++++++||++|+.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 33444455556 8999999999999986 789999999999999888777665543 3389999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHHh---hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCC
Q 014801 121 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 197 (418)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~ 197 (418)
+++.+++..... ++++..+.++.+...+...+ .++..+|+|+||+.+. ..+.+.+++++||||+|.+..
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--
Confidence 999999876655 68888888888777666543 3456799999997442 345678999999999998732
Q ss_pred CCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech-hhHHHHHHHHHhh
Q 014801 198 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDA 276 (418)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 276 (418)
. ....+...+.+.+++++|||+.+....++.....++..+......... +......... ..+...+..+.
T Consensus 737 ~----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~---v~~~~~~~~~~~~k~~il~el~-- 807 (1147)
T PRK10689 737 R----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA---VKTFVREYDSLVVREAILREIL-- 807 (1147)
T ss_pred h----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCC---ceEEEEecCcHHHHHHHHHHHh--
Confidence 1 223345566788999999999887777776667777665543332211 2222222221 11222222332
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
.+++++|||++.+.++.+++.|.+. +.++..+||+|++.+|..++..|.+|+++|||||+++++|+|+|++++||..
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 4579999999999999999999887 6789999999999999999999999999999999999999999999999976
Q ss_pred cCC-CChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 355 DMP-DSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 355 ~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
+.. .+..+|.|++||+||.|+.|.|++++...
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 553 46788999999999999999999988643
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-40 Score=307.53 Aligned_cols=319 Identities=22% Similarity=0.273 Sum_probs=252.8
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
|+..+++-|.+++..+++++++++..|||+||+++|.++++-.-. -+|+|.|..+|.....+.++.. |+
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G------~TLVVSPLiSLM~DQV~~l~~~-----Gi 82 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEG------LTLVVSPLISLMKDQVDQLEAA-----GI 82 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCC------CEEEECchHHHHHHHHHHHHHc-----Cc
Confidence 788999999999999999999999999999999999999887722 6899999999999888888876 88
Q ss_pred eEEEEEcCcchHHHHHHh---hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCHHHHHHHH---h
Q 014801 136 KVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIF---K 208 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~~~~~~~~---~ 208 (418)
.+..+.++.+.+++...+ ..+..++++.+||++..-...+.+.-..+.+++|||||+++.+ ++|++.+..+- .
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 999998887776665554 4466799999999986422212222456788999999999987 67888876654 3
Q ss_pred hCCCCccEEEEEecCCccHHHHHHHhcCCCe-EEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeC
Q 014801 209 MTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVK 287 (418)
Q Consensus 209 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~ 287 (418)
.++ +++++++|||.++.+...+...+.... ..+........+........ ....+...+.+ ......+..||||.
T Consensus 163 ~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~--~~~~q~~fi~~-~~~~~~~~GIIYc~ 238 (590)
T COG0514 163 GLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG--EPSDQLAFLAT-VLPQLSKSGIIYCL 238 (590)
T ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc--cHHHHHHHHHh-hccccCCCeEEEEe
Confidence 444 677999999999888776665544322 33333332222211111111 11122222222 12445567899999
Q ss_pred CchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhc
Q 014801 288 SVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 367 (418)
Q Consensus 288 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 367 (418)
+++.++.++++|...|+.+..||++|+.++|..+.+.|.+++++|+|||.+.+.|||-|+++.||||+.|.|...|.|-.
T Consensus 239 sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~ 318 (590)
T COG0514 239 TRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQET 318 (590)
T ss_pred eHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeEEEEecCCCcH
Q 014801 368 GRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 368 GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|||||.|.+..+++++++.|..
T Consensus 319 GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 319 GRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred hhccCCCCcceEEEeeccccHH
Confidence 9999999999999999965544
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.5e-41 Score=327.17 Aligned_cols=337 Identities=23% Similarity=0.304 Sum_probs=251.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 122 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~ 122 (418)
+++.+.+.+...++.++++.|+.++..... ++|++|++|||||||+++++++++.+.+++. +++|+||+++|+.|.+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCC--cEEEEeChHHHHHHHH
Confidence 677888888888888999999999988766 5999999999999999999999999987632 7999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHH
Q 014801 123 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 202 (418)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~ 202 (418)
++|+++... |+++...+|+..... +.+. .++|+|+|||++..+.++....+..+++||+||+|.+.+. ...+.
T Consensus 94 ~~~~~~~~~--GirV~~~TgD~~~~~--~~l~--~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~-~RG~~ 166 (766)
T COG1204 94 EEFSRLEEL--GIRVGISTGDYDLDD--ERLA--RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR-TRGPV 166 (766)
T ss_pred HHhhhHHhc--CCEEEEecCCcccch--hhhc--cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc-ccCce
Confidence 999954433 999999999866443 2222 2599999999999999998888889999999999999873 23344
Q ss_pred HHHHHhh---CCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechh-------hHHHHHHH
Q 014801 203 VQEIFKM---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-------EKNRKLND 272 (418)
Q Consensus 203 ~~~~~~~---~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 272 (418)
+..+... .....+++++|||+|+. ..++.....++....+..............+...... .....+..
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 4333332 22337999999999975 5566666555442222222222222223333332211 22333333
Q ss_pred HHhhc-CCCeEEEEeCCchhHHHHHHHHHhC-------------------------------------CCCeEEecCCCC
Q 014801 273 LLDAL-DFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIHSGMS 314 (418)
Q Consensus 273 ~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~-------------------------------------~~~~~~~~~~~~ 314 (418)
++... .+++++|||+++..+...++.+.+. ...+..+|++++
T Consensus 246 v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 246 VLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 33333 5579999999999999999888730 013567899999
Q ss_pred HHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEE----Eec-----CCCChhhhhhhcccccCCCCc--eeEEEEe
Q 014801 315 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----NYD-----MPDSADTYLHRVGRAGRFGTK--GLAITFV 383 (418)
Q Consensus 315 ~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~ 383 (418)
.++|..+.+.|++|.++||+||++++.|+|+|.-.++| .|+ .+-+..++.||.|||||.|-. |.++++.
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999999999999999999999999999777766 344 344788999999999998744 6777777
Q ss_pred cCCCcHH
Q 014801 384 SSASDSD 390 (418)
Q Consensus 384 ~~~~~~~ 390 (418)
...++..
T Consensus 406 ~~~~~~~ 412 (766)
T COG1204 406 TSHDELE 412 (766)
T ss_pred cCccchh
Confidence 4444444
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=296.65 Aligned_cols=346 Identities=20% Similarity=0.229 Sum_probs=272.6
Q ss_pred CCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCee
Q 014801 29 QGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT 107 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~ 107 (418)
......+..+.+++.+++++.+-+...|+.+|.|.|.-++.+ ++.|.+.+|+.+|+||||++..++-+..+...++ +
T Consensus 186 a~~~~~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--K 263 (830)
T COG1202 186 AETDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--K 263 (830)
T ss_pred ccccccccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--e
Confidence 344445556778889999999999999999999999999987 5679999999999999999999988887776443 7
Q ss_pred EEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccE
Q 014801 108 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRH 184 (418)
Q Consensus 108 ~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 184 (418)
.|+++|..+|++|-+++|+.-...+ ++++..-.|......... .-.....||+|+|++-+..+++.. ..+.+++.
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 9999999999999999998766666 777766555433332221 122344799999999999999987 57899999
Q ss_pred EEEechhhhccCCCCHHHH---HHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe
Q 014801 185 FILDECDKMLESLDMRRDV---QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 261 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~~~---~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (418)
+||||+|.+.+. ..+..+ ..-+..+-+..|+|++|||..+. ..++..+..+.+.+.. .+..+..+.+.+
T Consensus 342 VVIDEiHtL~de-ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~------RPVplErHlvf~ 413 (830)
T COG1202 342 VVIDEIHTLEDE-ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE------RPVPLERHLVFA 413 (830)
T ss_pred EEeeeeeeccch-hcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC------CCCChhHeeeee
Confidence 999999998762 222222 22233344578999999999876 5566766655544322 223445566665
Q ss_pred c-hhhHHHHHHHHHhhc--------CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccE
Q 014801 262 S-ELEKNRKLNDLLDAL--------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 332 (418)
Q Consensus 262 ~-~~~~~~~l~~~~~~~--------~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 332 (418)
. ..++...+..+.+.. -.+++|||++++..|..++..|...|+++..||++++..+|+.+...|.++++.+
T Consensus 414 ~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~ 493 (830)
T COG1202 414 RNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAA 493 (830)
T ss_pred cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcce
Confidence 5 677888777776542 3479999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEE---EecC-CCChhhhhhhcccccCCC--CceeEEEEecCC
Q 014801 333 LVATDLVGRGIDIERVNIVI---NYDM-PDSADTYLHRVGRAGRFG--TKGLAITFVSSA 386 (418)
Q Consensus 333 lv~t~~l~~G~d~~~~~~vi---~~~~-~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 386 (418)
+|+|.+++.|+|+|...+++ -++. +-|+.+|.||.|||||.+ ..|++++++.+.
T Consensus 494 VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 494 VVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred EeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999999655543 2233 349999999999999986 459999988765
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3e-39 Score=312.56 Aligned_cols=317 Identities=19% Similarity=0.233 Sum_probs=233.0
Q ss_pred CCCCCCcHHHHHhHHhhhcCC-cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 55 SGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.|+. |+|+|.++++.++.|+ ++++.+|||||||.++.++.+..........++++++|+++|+.|+++.++++.+..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 3776 9999999999999998 5777899999999866544553322222232555678999999999999999887542
Q ss_pred ----------------------CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc---------CCC---CC
Q 014801 134 ----------------------DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD---------KDL---SL 179 (418)
Q Consensus 134 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---------~~~---~~ 179 (418)
.+++..+.||.....+...+..+ ++|+|+|++++.+-.-. ..+ .+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 47889999999988777777655 69999997766431110 001 26
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhC--CC---CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMT--PH---DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 254 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~--~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
.++.++|+|||| + . .+|...+..+.... +. ..|+++||||++.+.......+..++..+.+... .......
T Consensus 170 ~~v~~LVLDEAD-L-d-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~-~l~a~ki 245 (844)
T TIGR02621 170 GQDALIVHDEAH-L-E-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK-RLAAKKI 245 (844)
T ss_pred ccceEEEEehhh-h-c-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc-cccccce
Confidence 789999999999 3 3 68889998888864 22 2689999999998888777777766655443322 1222222
Q ss_pred eEEEEEechhhHHHHHHHHH---hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHH-----HHHHhhh
Q 014801 255 VQHYIKLSELEKNRKLNDLL---DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL-----TRYKGFK 326 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~ 326 (418)
.+ ++..+...+...+...+ ....++++|||||+++.++.+++.|.+.++ ..+||+|++.+|. .+++.|.
T Consensus 246 ~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 33 33433333332221111 123457899999999999999999998776 8999999999999 7788898
Q ss_pred c----CC-------ccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCce-eEEEEe
Q 014801 327 E----GN-------KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG-LAITFV 383 (418)
Q Consensus 327 ~----g~-------~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g-~~~~~~ 383 (418)
+ |. .+|||||+++++|+|++. ++||....| ...|+||+||+||.|+.| ..+.++
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 6 43 689999999999999986 888876655 689999999999998853 334444
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-39 Score=331.48 Aligned_cols=322 Identities=22% Similarity=0.295 Sum_probs=229.2
Q ss_pred EEccCCCchhhHHHHHhhhccCCC----------CCCeeEEEecCcHHHHHHHHHHHHHHhc-----------cCCCceE
Q 014801 79 CQAKSGMGKTAVFVLSTLQQTEPN----------PGQVTALVLCHTRELAYQICHEFERFST-----------YLPDIKV 137 (418)
Q Consensus 79 v~~~tGsGKT~~~~l~~~~~~~~~----------~~~~~~lii~P~~~l~~q~~~~~~~~~~-----------~~~~~~~ 137 (418)
|++|||||||+++.++++..+... ..+.++|||+|+++|+.|+.++++.... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998876432 1346899999999999999998875221 1237899
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEechhhhccC-CC--CHHHHHHHHhhCCCC
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLES-LD--MRRDVQEIFKMTPHD 213 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~~~~~-~~--~~~~~~~~~~~~~~~ 213 (418)
...+|+.+...+...+.+ .++|+|+||++|..++.+. ...++++++|||||+|.+.+. .+ +...+.++....+..
T Consensus 81 ~vrtGDt~~~eR~rll~~-ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRN-PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcC-CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 999999988877665554 3699999999999887643 346899999999999999863 12 234566666666778
Q ss_pred ccEEEEEecCCccHHHHHHHhcCC-CeEEEEcCCcccccccceEEEEEechh--------------------hHH-HHHH
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAKLTLHGLVQHYIKLSEL--------------------EKN-RKLN 271 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~l~ 271 (418)
.|+|++|||+++. ..+++.+... +..+.. ....... .+ ..++..... ... ....
T Consensus 160 ~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~-~l-~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 160 AQRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHP-QI-RIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CeEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCccc-ce-EEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 8999999999873 5555444332 444432 2111111 11 111111100 000 1111
Q ss_pred HHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCC---------------------------------CCeEEecCCCCHHH
Q 014801 272 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---------------------------------FPSICIHSGMSQEE 317 (418)
Q Consensus 272 ~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~---------------------------------~~~~~~~~~~~~~~ 317 (418)
.++.. ..++++|||||++..|+.++..|++.. ..+..+||++++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 22222 245789999999999999999987531 12567899999999
Q ss_pred HHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHH---H
Q 014801 318 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN---Q 394 (418)
Q Consensus 318 r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~---~ 394 (418)
|..+++.|++|++++||||++++.|||++++++||+++.|.|..+|+||+||+||. ..|.+..++.+.+...+++ .
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ 394 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVI 394 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999996 2333333333333333332 3
Q ss_pred HHHHhccCcccc
Q 014801 395 VQARFEVDIKEL 406 (418)
Q Consensus 395 ~~~~~~~~~~~~ 406 (418)
++..++..++.+
T Consensus 395 ve~~l~g~iE~~ 406 (1490)
T PRK09751 395 VECMFAGRLENL 406 (1490)
T ss_pred HHHHhcCCCCcc
Confidence 556666666654
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2e-38 Score=302.38 Aligned_cols=307 Identities=17% Similarity=0.185 Sum_probs=217.3
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
..|+++|.++++.++.++++++++|||+|||.++...+ ....... ..++||++|+++|+.||.+.++++.... ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAM 189 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHHHHHHHHHhcccc-ccce
Confidence 48999999999999999999999999999998765432 2222222 2279999999999999999999876432 3344
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
..+.+|.... ...+|+|+|++.+.+... ..++++++||+||||++.+ ..+..+...+++..+++
T Consensus 190 ~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~-----~~~~~il~~~~~~~~~l 253 (501)
T PHA02558 190 HKIYSGTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG-----KSLTSIITKLDNCKFKF 253 (501)
T ss_pred eEEecCcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc-----hhHHHHHHhhhccceEE
Confidence 4455543321 225899999999875432 2467899999999998865 23455555565667899
Q ss_pred EEEecCCccHHHH--HHHhcCCCeEEEEcCCccc---ccccc--eEEEE---------------------EechhhHHHH
Q 014801 218 MFSATLSKEIRPV--CKKFMQDPMEIYVDDEAKL---TLHGL--VQHYI---------------------KLSELEKNRK 269 (418)
Q Consensus 218 ~lSAT~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~---------------------~~~~~~~~~~ 269 (418)
++|||+....... ...+++. ....+...... ..... ..... ......+...
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 9999997542211 1112222 11111100000 00000 00000 0111223333
Q ss_pred HHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEe-cccccCCCCC
Q 014801 270 LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIE 346 (418)
Q Consensus 270 l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~l~~G~d~~ 346 (418)
+..+.... .+.+++|||.+.++++.+++.|.+.+.++..+||+++.++|..+++.|++|+..+|||| +.+++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 33333322 45788999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEec
Q 014801 347 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
++++||+..++.|...|.|++||++|.+..+..+.+++
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 99999999999999999999999999876654444443
No 58
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.9e-38 Score=299.68 Aligned_cols=335 Identities=22% Similarity=0.292 Sum_probs=249.7
Q ss_pred CCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCC-------CCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 56 GFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~-------~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
++..++..|.++++.... +.+.+||||||+|||-++++.+++.+.+ ..+..|+++|+|+++|+.+..+.|.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 678899999999999886 7789999999999999999999998764 22456999999999999999998887
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC---CCCCCccEEEEechhhhccCCCCHHHHH
Q 014801 128 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD---LSLKNVRHFILDECDKMLESLDMRRDVQ 204 (418)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~~~~~~~~~~~~~ 204 (418)
-...+ |+.+..++|+....... ... .+|+|+|||++.-.-++.- ..+..++++|+||+|.+.+.. ++.++
T Consensus 187 kl~~~-gi~v~ELTGD~ql~~te--i~~--tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R--GpvlE 259 (1230)
T KOG0952|consen 187 KLAPL-GISVRELTGDTQLTKTE--IAD--TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR--GPVLE 259 (1230)
T ss_pred hcccc-cceEEEecCcchhhHHH--HHh--cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc--cchHH
Confidence 76666 99999999987755443 222 4999999999976554432 236778999999999998743 34444
Q ss_pred HHH-------hhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechh---hHH-----HH
Q 014801 205 EIF-------KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL---EKN-----RK 269 (418)
Q Consensus 205 ~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~ 269 (418)
.+. .......+++++|||+|+. .+.+..+..++....+.......+..+.+.++..+.. ... ..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 333 3344567899999999974 6677777666554444444444555566666554433 111 11
Q ss_pred HHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCC-----------------------CCeEEecCCCCHHHHHHHHHhh
Q 014801 270 LNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECN-----------------------FPSICIHSGMSQEERLTRYKGF 325 (418)
Q Consensus 270 l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~-----------------------~~~~~~~~~~~~~~r~~~~~~f 325 (418)
..++++.+ .+.+++|||.+++.....++.|.+.+ ....++|++|...+|..+.+.|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 22222222 56899999999999999888887531 1356689999999999999999
Q ss_pred hcCCccEEEEecccccCCCCCCCCEEEE----ecCC------CChhhhhhhcccccCC--CCceeEEEEecCCCcHHHHH
Q 014801 326 KEGNKRILVATDLVGRGIDIERVNIVIN----YDMP------DSADTYLHRVGRAGRF--GTKGLAITFVSSASDSDILN 393 (418)
Q Consensus 326 ~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~~~------~s~~~~~Q~~GR~~R~--~~~g~~~~~~~~~~~~~~~~ 393 (418)
..|.++||+||.++++|+|+|.-.++|. |+.. .+....+|+.|||||. +..|.++++.+.+.-..+..
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred hcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 9999999999999999999996555552 3222 2567789999999996 46699999888665555554
Q ss_pred HHHHH
Q 014801 394 QVQAR 398 (418)
Q Consensus 394 ~~~~~ 398 (418)
.+...
T Consensus 499 Ll~~~ 503 (1230)
T KOG0952|consen 499 LLTGQ 503 (1230)
T ss_pred HHcCC
Confidence 44433
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1e-36 Score=293.45 Aligned_cols=309 Identities=18% Similarity=0.220 Sum_probs=221.2
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHH---------HHHhhhcc---CCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVF---------VLSTLQQT---EPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~---------~l~~~~~~---~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
...|.++++.+..+++++++|+||+|||.+. +++.+..+ .......++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999862 22233322 21223448999999999999999988776
Q ss_pred hcc--CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHH
Q 014801 129 STY--LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 206 (418)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~ 206 (418)
.+. ..+.++...+|+.......... ...+|+++|+... ...+.++++||+||||...... ..+..+
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~--k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---DllL~l 313 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNP--KPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DIIIAV 313 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhccc--CCCCEEEEeCccc-------ccccccCCEEEccccccCccch---hHHHHH
Confidence 543 2356778888887632111111 1358999996521 1257889999999999876532 223333
Q ss_pred Hhh-CCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec----------hhhHHHHHHHHHh
Q 014801 207 FKM-TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS----------ELEKNRKLNDLLD 275 (418)
Q Consensus 207 ~~~-~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~ 275 (418)
... .....|+++||||++.+...+ ..++.++..+.+... ....+.+.+.... ...+...+..+..
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 322 223358999999999877665 577777777665432 1223334443221 1112222333322
Q ss_pred h--cCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhh-hcCCccEEEEecccccCCCCCCCCE
Q 014801 276 A--LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGF-KEGNKRILVATDLVGRGIDIERVNI 350 (418)
Q Consensus 276 ~--~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~t~~l~~G~d~~~~~~ 350 (418)
. ..++.+|||+++.++++.+++.|.+. ++.+..+||++++. .+.++.| ++|+.+|||||+++++|+|+|++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 2 23468999999999999999999877 68899999999975 4556666 6899999999999999999999999
Q ss_pred EEEec---CCC---------ChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 351 VINYD---MPD---------SADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 351 vi~~~---~~~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
||+++ .|. |..++.||.||+||. ++|.|+.++...+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 444 788999999999999 79999999986543
No 60
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=288.63 Aligned_cols=334 Identities=21% Similarity=0.302 Sum_probs=233.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 123 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~ 123 (418)
+++.....+.-.....+|.||.+.+...+ |++++|++|||+|||+++...++.++...+.+ ++++++|++.|+.|...
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~-KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKG-KVVFLAPTRPLVNQQIA 124 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcc-eEEEeeCCchHHHHHHH
Confidence 33443333333345589999999999888 99999999999999999999999888776665 89999999999999987
Q ss_pred HHHHHhccCCCceEEEEEcC-cchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCC-CCCccEEEEechhhhccCCCCHH
Q 014801 124 EFERFSTYLPDIKVAVFYGG-VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS-LKNVRHFILDECDKMLESLDMRR 201 (418)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-~~~~~~iViDE~h~~~~~~~~~~ 201 (418)
.+..++.. ..+....|+ .........+.. .+|+++||+.+.+-+...... ++.+.++||||||+....+.+..
T Consensus 125 ~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s--~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 125 CFSIYLIP---YSVTGQLGDTVPRSNRGEIVAS--KRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHhhccCc---ccceeeccCccCCCchhhhhcc--cceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 77766432 333344444 333333333333 499999999999877765443 58899999999999998888888
Q ss_pred HHHHHHhhCCCCccEEEEEecCCccHHHHHHH---hcCC----------------------CeE----------------
Q 014801 202 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK---FMQD----------------------PME---------------- 240 (418)
Q Consensus 202 ~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~---~~~~----------------------~~~---------------- 240 (418)
.+..++.......|++++||||.+........ +.-. +..
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i 279 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMII 279 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHH
Confidence 88888877777779999999986543221110 0000 000
Q ss_pred --------------------EEEc----CCcc--cccc------------------cceEEEEE--------------e-
Q 014801 241 --------------------IYVD----DEAK--LTLH------------------GLVQHYIK--------------L- 261 (418)
Q Consensus 241 --------------------~~~~----~~~~--~~~~------------------~~~~~~~~--------------~- 261 (418)
.+.. .... .... .+..+.+. .
T Consensus 280 ~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~ 359 (746)
T KOG0354|consen 280 EPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVA 359 (746)
T ss_pred HHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccc
Confidence 0000 0000 0000 00000000 0
Q ss_pred -------------------------------c-hhhHHHHHHHH----HhhcCCCeEEEEeCCchhHHHHHHHHHhC---
Q 014801 262 -------------------------------S-ELEKNRKLNDL----LDALDFNQVVIFVKSVSRAAELNKLLVEC--- 302 (418)
Q Consensus 262 -------------------------------~-~~~~~~~l~~~----~~~~~~~~~lif~~~~~~~~~~~~~L~~~--- 302 (418)
+ ...+.+.+.++ ....+..++||||..++.+..+..+|.+.
T Consensus 360 ~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~ 439 (746)
T KOG0354|consen 360 LKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL 439 (746)
T ss_pred hhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc
Confidence 0 00111111111 12234568999999999999999998742
Q ss_pred CCCeEEe--------cCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCC
Q 014801 303 NFPSICI--------HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 374 (418)
Q Consensus 303 ~~~~~~~--------~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 374 (418)
+++...+ ..+|++.++.++++.|++|+++|||||++.++|+|++.|+.||.|+...|+..++||+|| ||.
T Consensus 440 ~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa- 517 (746)
T KOG0354|consen 440 GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA- 517 (746)
T ss_pred ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-
Confidence 3333333 247999999999999999999999999999999999999999999999999999999999 997
Q ss_pred CceeEEEEecCC
Q 014801 375 TKGLAITFVSSA 386 (418)
Q Consensus 375 ~~g~~~~~~~~~ 386 (418)
+.|.+++++...
T Consensus 518 ~ns~~vll~t~~ 529 (746)
T KOG0354|consen 518 RNSKCVLLTTGS 529 (746)
T ss_pred cCCeEEEEEcch
Confidence 577777777733
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=298.93 Aligned_cols=352 Identities=25% Similarity=0.338 Sum_probs=269.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 123 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~ 123 (418)
.+..+...+.+.|+..|+.||.+|+..+..|++++|..|||||||.+|++++++.+.+.+.. ++|+|.|+++|++.+.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 44556888888899999999999999999999999999999999999999999999888876 89999999999999999
Q ss_pred HHHHHhccCC-CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHH-HhcC---CCCCCCccEEEEechhhhccCCC
Q 014801 124 EFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILAL-ARDK---DLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~-~~~~---~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
.++++....+ ++++..++|+....... .+..+.++|++|||+|+..+ ++.. .+.+.++++||+||+|.+-+..+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch
Confidence 9999998885 57888888887766554 44445589999999999884 4432 24477899999999998876322
Q ss_pred --CH---HHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec------h---h
Q 014801 199 --MR---RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS------E---L 264 (418)
Q Consensus 199 --~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~ 264 (418)
.. ..+.+..+..+..+|+|++|||+.+. ...+..+.+......+..+.. ...........+ . .
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~--~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGS--PRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCC--CCCceEEEEeCCcchhhhhhccc
Confidence 12 23344445555688999999999876 556667666665553332222 111122222222 1 1
Q ss_pred hHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHH----HHHHhCC----CCeEEecCCCCHHHHHHHHHhhhcCCccEEE
Q 014801 265 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELN----KLLVECN----FPSICIHSGMSQEERLTRYKGFKEGNKRILV 334 (418)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 334 (418)
+....+..+.... .+-++|+|+.++..++.+. +.+.+.+ ..+..+++++..++|..+...|+.|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 3333333333333 5579999999999999996 4444445 5677889999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEecCCC-ChhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHHHHHHhc
Q 014801 335 ATDLVGRGIDIERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 400 (418)
Q Consensus 335 ~t~~l~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 400 (418)
+|.+++-|+|+-.++.||..+.|. +..++.|+.||+||.++.+.++.....+ -+..++......++
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 9999999999999999777777666632 23344444444444
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.6e-37 Score=283.48 Aligned_cols=300 Identities=20% Similarity=0.265 Sum_probs=201.7
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHH-------
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI------- 148 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 148 (418)
++++.+|||+|||.+++++++..+.... ..++++++|+++|+.|+.+.+..+.. -++..++++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-~~~ii~v~P~~~L~~q~~~~l~~~f~----~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-ADRVIIALPTRATINAMYRRAKELFG----SNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-CCeEEEEeehHHHHHHHHHHHHHHhC----cccEEeeccHHHHHHhccCCc
Confidence 4789999999999999999998765433 34899999999999999999998753 23444444322110
Q ss_pred -----HHHHhhc-----CCCcEEEeccHHHHHHHhcCC----CCC--CCccEEEEechhhhccCCCCHHHHHHHHhhC-C
Q 014801 149 -----HKDLLKN-----ECPQIVVGTPGRILALARDKD----LSL--KNVRHFILDECDKMLESLDMRRDVQEIFKMT-P 211 (418)
Q Consensus 149 -----~~~~~~~-----~~~~i~v~T~~~l~~~~~~~~----~~~--~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~ 211 (418)
....... ...+|+++||+++...+.... ..+ -..+++|+||+|.+... .+. .+..++..+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~-~l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLA-LILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHH-HHHHHHHHHHH
Confidence 0000001 124799999999987655421 111 12378999999988752 222 243333333 3
Q ss_pred CCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEE--EechhhHHHHHHHHHhhc-CCCeEEEEeCC
Q 014801 212 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--KLSELEKNRKLNDLLDAL-DFNQVVIFVKS 288 (418)
Q Consensus 212 ~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~lif~~~ 288 (418)
.+.|++++|||++.....++.................... ....+. ......+...+..++... .++++||||++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRF--ERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccccc--ccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 4678999999999766665555433221111110000000 011111 111122344455555443 46899999999
Q ss_pred chhHHHHHHHHHhCCC--CeEEecCCCCHHHHHHH----HHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhh
Q 014801 289 VSRAAELNKLLVECNF--PSICIHSGMSQEERLTR----YKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 362 (418)
Q Consensus 289 ~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~ 362 (418)
.+.++.+++.|.+.+. .+..+||++++.+|... ++.|++|+.++||||+++++|+|++ ++++|.+..| ..+
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999988765 48899999999998764 8899999999999999999999996 7888877655 789
Q ss_pred hhhhcccccCCCCc----eeEEEEecCCC
Q 014801 363 YLHRVGRAGRFGTK----GLAITFVSSAS 387 (418)
Q Consensus 363 ~~Q~~GR~~R~~~~----g~~~~~~~~~~ 387 (418)
|+||+||+||.|+. |.++++....+
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999998754 35666655433
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.8e-35 Score=297.45 Aligned_cols=323 Identities=21% Similarity=0.320 Sum_probs=235.1
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
..++++||++++...+.+ +++|++|||+|||.++++.+...+. .. +.++||++|+++|+.||.+.++++.... ..+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~~-~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-KK-GGKVLILAPTKPLVEQHAEFFRKFLNIP-EEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-hC-CCeEEEEeCcHHHHHHHHHHHHHHhCCC-Cce
Confidence 458899999999888776 9999999999999998887777663 22 2389999999999999999999876432 457
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccE
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 216 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (418)
+..++|+.....+...+.. .+|+|+||+.+.+.+....+.+.++++|||||||++.+...+...... +......+.+
T Consensus 89 v~~~~g~~~~~~r~~~~~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~-~~~~~~~~~i 165 (773)
T PRK13766 89 IVVFTGEVSPEKRAELWEK--AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAER-YHEDAKNPLV 165 (773)
T ss_pred EEEEeCCCCHHHHHHHHhC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHH-HHhcCCCCEE
Confidence 8888888776654444433 499999999998887777888899999999999998874444433333 3334456779
Q ss_pred EEEEecCCccHHH---HHHHhcCCCeEE--------------------EEcCCc--------------------------
Q 014801 217 MMFSATLSKEIRP---VCKKFMQDPMEI--------------------YVDDEA-------------------------- 247 (418)
Q Consensus 217 i~lSAT~~~~~~~---~~~~~~~~~~~~--------------------~~~~~~-------------------------- 247 (418)
+++|||+...... .+..+......+ .+....
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998543221 111111100000 000000
Q ss_pred ---c--cc----------cc-cceE------------------------------------------EE-----------
Q 014801 248 ---K--LT----------LH-GLVQ------------------------------------------HY----------- 258 (418)
Q Consensus 248 ---~--~~----------~~-~~~~------------------------------------------~~----------- 258 (418)
. .. .. .+.. ..
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 0 00 00 0000 00
Q ss_pred ---------------EEechhhHHHHHHHHHhh----cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCC-------
Q 014801 259 ---------------IKLSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG------- 312 (418)
Q Consensus 259 ---------------~~~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~------- 312 (418)
.......+...+.+++.. .+++++||||++...++.+.+.|...++.+..++|.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 000011223334444433 466899999999999999999999989999888875
Q ss_pred -CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 313 -MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 313 -~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
+++.+|..+++.|++|+.++||+|+++++|+|+|.+++||+|++++|+..++||+||+||.|. |.+++++....
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999864 77777776443
No 64
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-35 Score=291.37 Aligned_cols=301 Identities=19% Similarity=0.249 Sum_probs=224.9
Q ss_pred HHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 014801 64 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 143 (418)
Q Consensus 64 Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 143 (418)
-.+.+..+..+++++++|+||||||.++.++++..... ..+++++.|+++++.|+++.+.+......+..++....+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~ 83 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG 83 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc
Confidence 34566667778899999999999999999999877632 238999999999999999988654433225556554443
Q ss_pred cchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh-hccCCCCHHH-HHHHHhhCCCCccEEEEEe
Q 014801 144 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~~~-~~~~~~~~~~~~~~i~lSA 221 (418)
... .....+|.|+|++.|.+.+.. ...+.++++|||||+|. ..+ .++... +..+...++...++++|||
T Consensus 84 ~~~-------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~-~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 84 ENK-------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLD-ADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ccc-------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhc-cchHHHHHHHHHHhcCCCceEEEEeC
Confidence 221 122358999999999998876 45789999999999995 333 344333 3445555677889999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH-----HHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-----RKLNDLLDALDFNQVVIFVKSVSRAAELN 296 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~lif~~~~~~~~~~~ 296 (418)
|++... +..++.++..+...... ..+...|.......+. ..+..++.. ..+.+|||+++.++++.++
T Consensus 155 Tl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 155 TLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred CCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHH
Confidence 998652 35566554433332211 1223334433322221 223333333 3578999999999999999
Q ss_pred HHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCC---------------
Q 014801 297 KLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD--------------- 358 (418)
Q Consensus 297 ~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~--------------- 358 (418)
+.|.+ .++.+..+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||+++.+.
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 367889999999999999999999999999999999999999999999999998764
Q ss_pred ---ChhhhhhhcccccCCCCceeEEEEecC
Q 014801 359 ---SADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 359 ---s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|..++.||.||+||. ++|.|+.+++.
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~ 335 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSE 335 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCH
Confidence 345689999999998 79999999984
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-35 Score=292.62 Aligned_cols=303 Identities=19% Similarity=0.264 Sum_probs=226.7
Q ss_pred HHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 014801 64 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 143 (418)
Q Consensus 64 Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 143 (418)
-.+.+..+.+++++++.|+||||||+++.++++...... .+++++.|+++++.|+++.+........+..++...++
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~---~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN---GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC---CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 345666777789999999999999999998888765432 28999999999999999988654433336677666654
Q ss_pred cchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH-HHHHHHHhhCCCCccEEEEEec
Q 014801 144 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-~~~~~~~~~~~~~~~~i~lSAT 222 (418)
.... .....|+|+|++.+.+++.. ...++++++||+||+|...-..++. ..+..+....+++.++++||||
T Consensus 87 ~~~~-------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 87 ESKV-------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred cccc-------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 3321 12248999999999998876 4578999999999999743222332 2234455566778899999999
Q ss_pred CCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHH-----HHHHHHhhcCCCeEEEEeCCchhHHHHHH
Q 014801 223 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-----KLNDLLDALDFNQVVIFVKSVSRAAELNK 297 (418)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~lif~~~~~~~~~~~~ 297 (418)
++.. .+..++.++..+...... ..+...|...+...+.. .+..++.. ..+.+|||+++.++++.+++
T Consensus 159 l~~~---~l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 159 LDND---RLQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCHH---HHHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 9864 234566554444332211 12334444443332221 23333332 35899999999999999999
Q ss_pred HHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCC----------------
Q 014801 298 LLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD---------------- 358 (418)
Q Consensus 298 ~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~---------------- 358 (418)
.|.+ .++.+..+||+++..+|..++..|.+|..+|||||+++++|+|+|++++||+++.+.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9986 467888899999999999999999999999999999999999999999999977654
Q ss_pred --ChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 359 --SADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 359 --s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
|..++.||.||+||. .+|.|+.++...
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 446899999999998 699999999843
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.7e-35 Score=299.03 Aligned_cols=303 Identities=22% Similarity=0.291 Sum_probs=226.6
Q ss_pred HHHHC-CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 51 AIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 51 ~l~~~-~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
.+.+. |+ .|+++|+.+++.++.|++++++||||+|||..++ ++...+.. .+.+++|++||++|+.|+.+.++.++
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l-~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGL-VMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHH-HHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 44333 55 8999999999999999999999999999996443 33333322 23489999999999999999999998
Q ss_pred ccCCCceEEEEEcCcch-----HHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC--------
Q 014801 130 TYLPDIKVAVFYGGVNI-----KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-------- 196 (418)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-------- 196 (418)
... ++.+..+.|+.+. ......+..+.++|+|+||+.+.+.+. .+...+++++|+||||.+..+
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 776 7777777766442 222334455567999999999998776 345567999999999998742
Q ss_pred --CCCH-HHHHHHHhhCCC------------------------CccEEEEEecCCcc-HHHHHHHhcCCCeEEEEcCCcc
Q 014801 197 --LDMR-RDVQEIFKMTPH------------------------DKQVMMFSATLSKE-IRPVCKKFMQDPMEIYVDDEAK 248 (418)
Q Consensus 197 --~~~~-~~~~~~~~~~~~------------------------~~~~i~lSAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
.+|. ..+..++..++. ..|++++|||+++. ... .++.+...+.+... .
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~-~ 300 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP-V 300 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc-c
Confidence 3453 345444444332 67899999999864 332 12223333333332 2
Q ss_pred cccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhh
Q 014801 249 LTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRYKGF 325 (418)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 325 (418)
.....+.+.++... .+...+..++.... .++||||++.+. ++.+++.|...|+++..+||++ ...++.|
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 23455666666554 45566777776654 589999999777 9999999999999999999998 2235999
Q ss_pred hcCCccEEEE----ecccccCCCCCC-CCEEEEecCCC------ChhhhhhhcccccC
Q 014801 326 KEGNKRILVA----TDLVGRGIDIER-VNIVINYDMPD------SADTYLHRVGRAGR 372 (418)
Q Consensus 326 ~~g~~~vlv~----t~~l~~G~d~~~-~~~vi~~~~~~------s~~~~~Q~~GR~~R 372 (418)
++|+++|||| |+++++|+|+|+ ++.||+|+.|. ....+.+++||+..
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 589999999999 89999999998 66778999999864
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-35 Score=281.83 Aligned_cols=306 Identities=18% Similarity=0.159 Sum_probs=210.7
Q ss_pred CCcHHHHHhHHhhhc-C--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 59 HPSEVQHECIPQAIL-G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
.|||||++++..+.. + ++.++++|||+|||++++..+... . .++||+||+..|+.||.++|.++.... ..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-----k~tLILvps~~Lv~QW~~ef~~~~~l~-~~ 327 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-----KSCLVLCTSAVSVEQWKQQFKMWSTID-DS 327 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-----CCEEEEeCcHHHHHHHHHHHHHhcCCC-Cc
Confidence 689999999999885 3 378999999999999877655443 2 269999999999999999999986432 45
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC--------CCCCCCccEEEEechhhhccCCCCHHHHHHHH
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--------DLSLKNVRHFILDECDKMLESLDMRRDVQEIF 207 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~ 207 (418)
.+..+.|+.... . ....+|+|+|++++.+...+. .+.-..+++||+||||++.. ..+..+.
T Consensus 328 ~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~il 396 (732)
T TIGR00603 328 QICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRVL 396 (732)
T ss_pred eEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHHH
Confidence 566666653221 1 122589999999886432211 12234688999999998754 3444455
Q ss_pred hhCCCCccEEEEEecCCccHHH--HHHHhcCCCeEEEEcCCcc---cccccceEEEEEe---------------------
Q 014801 208 KMTPHDKQVMMFSATLSKEIRP--VCKKFMQDPMEIYVDDEAK---LTLHGLVQHYIKL--------------------- 261 (418)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------------- 261 (418)
..+. ....+++||||..+... .+..+++. ..+....... -.+.......+.+
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP-~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLNFLIGP-KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhhhhcCC-eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4443 34579999999643221 12222221 1111110000 0000000000111
Q ss_pred --chhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC-CccEEEEe
Q 014801 262 --SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVAT 336 (418)
Q Consensus 262 --~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t 336 (418)
....+...+..++..+ .+.++||||.+...++.+++.|. +..++|+++..+|..+++.|++| .+++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 1223344444555544 67899999999999999988873 45689999999999999999865 78999999
Q ss_pred cccccCCCCCCCCEEEEecCC-CChhhhhhhcccccCCCCceeE-------EEEecCCCcH
Q 014801 337 DLVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLA-------ITFVSSASDS 389 (418)
Q Consensus 337 ~~l~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~~-------~~~~~~~~~~ 389 (418)
.++.+|+|+|.+++||+++.+ .|..+|+||+||++|.+..|.+ +.+++.+...
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999999999999987 5999999999999998766553 7788865544
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5e-35 Score=277.35 Aligned_cols=316 Identities=21% Similarity=0.201 Sum_probs=237.6
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|++.|..+++.++.|+ +..+.||+|||+++.++++.....+. .+++++|++.|+.|.++++..+...+ ++++.
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~---~v~VvTptreLA~qdae~~~~l~~~l-Glsv~ 176 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGL---PVHVITVNDYLAERDAELMRPLYEAL-GLTVG 176 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCC---eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEE
Confidence 78999999999999998 99999999999999999998766543 89999999999999999999998887 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC-------------------------CCCCCCccEEEEechhh
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-------------------------DLSLKNVRHFILDECDK 192 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~-------------------------~~~~~~~~~iViDE~h~ 192 (418)
.+.|+.+........ ..+|+++|...| ...++.+ ......+.+.||||+|.
T Consensus 177 ~i~gg~~~~~r~~~y---~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 177 CVVEDQSPDERRAAY---GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEeCCCCHHHHHHHc---CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 999997654333322 259999999877 2333322 11235678999999997
Q ss_pred hccC--------------CCCHHH-----------------------------------HHHHHhh--------------
Q 014801 193 MLES--------------LDMRRD-----------------------------------VQEIFKM-------------- 209 (418)
Q Consensus 193 ~~~~--------------~~~~~~-----------------------------------~~~~~~~-------------- 209 (418)
+.=+ ...... +..+...
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 7510 000000 0000000
Q ss_pred ----------CC-------------------------------------------------------------CCccEEE
Q 014801 210 ----------TP-------------------------------------------------------------HDKQVMM 218 (418)
Q Consensus 210 ----------~~-------------------------------------------------------------~~~~~i~ 218 (418)
+. ...++.+
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 00 0006888
Q ss_pred EEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHH
Q 014801 219 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELN 296 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~ 296 (418)
||||.......+...+..++..+-... .......+.++.++...+...+...+... .+.++||||++.+.++.++
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~k---p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNR---PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCC---CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 999998776666666666654432222 22222334456667777888888887664 3578999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC---CCC-----EEEEecCCCChhhhhhhcc
Q 014801 297 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVG 368 (418)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~G 368 (418)
..|.+.|+++..+|+.++..++.. ..+..+...|+|||+++++|+|++ ++. +||.++.|.|...|.|++|
T Consensus 491 ~~L~~~gi~~~~Lhg~~~~rE~~i--i~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~G 568 (656)
T PRK12898 491 ALLREAGLPHQVLNAKQDAEEAAI--VARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAG 568 (656)
T ss_pred HHHHHCCCCEEEeeCCcHHHHHHH--HHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcc
Confidence 999999999999999876555444 445555557999999999999999 555 9999999999999999999
Q ss_pred cccCCCCceeEEEEecCCCc
Q 014801 369 RAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 369 R~~R~~~~g~~~~~~~~~~~ 388 (418)
|+||.|.+|.++.|++.+++
T Consensus 569 RTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 569 RCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cccCCCCCeEEEEEechhHH
Confidence 99999999999999996443
No 69
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=289.83 Aligned_cols=385 Identities=21% Similarity=0.256 Sum_probs=273.8
Q ss_pred chHHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC-CcEEEEc
Q 014801 3 FSTTRKKMLKLPIPSLPKQTAKPPRSQGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQA 81 (418)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~~v~~ 81 (418)
|...++.....++|..++.++......... ..++.+-+.++. |..++++.|.......+.+ .++++||
T Consensus 264 ~rl~kk~yeevhVPa~~~~pf~~~Ekl~~i---------selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCA 332 (1674)
T KOG0951|consen 264 FRLKKKGYEEVHVPAPSYFPFHKEEKLVKI---------SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCA 332 (1674)
T ss_pred EEEecCCceEEeCCCCCCCCCCccceeEee---------cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEec
Confidence 334444445555555554444333222111 236667777776 5567999999999998875 5799999
Q ss_pred cCCCchhhHHHHHhhhccCCCC--------CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 82 KSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 82 ~tGsGKT~~~~l~~~~~~~~~~--------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
|||+|||-++++.+++.+..+. ...++++++|.++|+++|...|.+....+ +++|..++|+........
T Consensus 333 PTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qi-- 409 (1674)
T KOG0951|consen 333 PTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQI-- 409 (1674)
T ss_pred cCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhhh--
Confidence 9999999999999999876544 23489999999999999999998877777 999999999865332221
Q ss_pred hcCCCcEEEeccHHHHHHHhcCC--CCCCCccEEEEechhhhccCCCCHHHHHHHH-------hhCCCCccEEEEEecCC
Q 014801 154 KNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRDVQEIF-------KMTPHDKQVMMFSATLS 224 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~-------~~~~~~~~~i~lSAT~~ 224 (418)
. ..+|+|+|||++.-.-++.+ -..+-++++|+||.|.+.++.+ +.+..+. ......++++++|||+|
T Consensus 410 e--eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRG--pvLESIVaRt~r~ses~~e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 410 E--ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRG--PVLESIVARTFRRSESTEEGSRLVGLSATLP 485 (1674)
T ss_pred h--cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccc--hHHHHHHHHHHHHhhhcccCceeeeecccCC
Confidence 1 24899999999976666532 1234578899999999876433 3332222 23345789999999999
Q ss_pred ccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH--------HHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 014801 225 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN--------RKLNDLLDALDFNQVVIFVKSVSRAAELN 296 (418)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~lif~~~~~~~~~~~ 296 (418)
+. .+.+..+..++ ...+..........+.+.++...+.... ....++++....+++|||+.++++..+.+
T Consensus 486 Ny-~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA 563 (1674)
T KOG0951|consen 486 NY-EDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTA 563 (1674)
T ss_pred ch-hhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHH
Confidence 75 44444444343 2222222334555677777776543221 23445666667799999999999988888
Q ss_pred HHHHh-------------------------------------CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccc
Q 014801 297 KLLVE-------------------------------------CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 339 (418)
Q Consensus 297 ~~L~~-------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l 339 (418)
+.++. ..+.+.++|++|++.+|..+++.|.+|.++|+++|.++
T Consensus 564 ~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatl 643 (1674)
T KOG0951|consen 564 RAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATL 643 (1674)
T ss_pred HHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhh
Confidence 77763 13467889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEE----EecC------CCChhhhhhhcccccCCCCc--eeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 340 GRGIDIERVNIVI----NYDM------PDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 340 ~~G~d~~~~~~vi----~~~~------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
++|+|+|.-.++| .|++ +.++.+..||.|||||.+.. |..+++.+.++-..++..+.+.+..+..-++
T Consensus 644 awgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~ 723 (1674)
T KOG0951|consen 644 AWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVS 723 (1674)
T ss_pred hhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHH
Confidence 9999999777666 3333 23889999999999997644 7777777766555666666666655544443
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.7e-34 Score=263.72 Aligned_cols=293 Identities=17% Similarity=0.167 Sum_probs=200.9
Q ss_pred HHHHhHHhhhcCCc--EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC---CCceE
Q 014801 63 VQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL---PDIKV 137 (418)
Q Consensus 63 ~Q~~~~~~~~~~~~--~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~---~~~~~ 137 (418)
+|.++++.+..+++ +++++|||+|||.+++++++... .++++++|+++|++|+.+.++.+.... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998764 78899999999999998888531 268999999999999999998886432 15566
Q ss_pred EEEEcCcchHH--H-----------------HHHhhcCCCcEEEeccHHHHHHHhcCC--------CCCCCccEEEEech
Q 014801 138 AVFYGGVNIKI--H-----------------KDLLKNECPQIVVGTPGRILALARDKD--------LSLKNVRHFILDEC 190 (418)
Q Consensus 138 ~~~~~~~~~~~--~-----------------~~~~~~~~~~i~v~T~~~l~~~~~~~~--------~~~~~~~~iViDE~ 190 (418)
..+.|....+. . ........+.|+++||+.|..+++... ..+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 66666522220 0 111222357899999999987765421 12578999999999
Q ss_pred hhhccCCC----CHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh--cCCCeEEEEcCCcc----------------
Q 014801 191 DKMLESLD----MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF--MQDPMEIYVDDEAK---------------- 248 (418)
Q Consensus 191 h~~~~~~~----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------- 248 (418)
|.+..... +......+........+++++|||+++.....+... .+.+..........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99875211 111223333333335789999999998777766654 34443222222000
Q ss_pred -cccccceEEEEEechhhHHHHHHH-------HHhhcCCCeEEEEeCCchhHHHHHHHHHhCC--CCeEEecCCCCHHHH
Q 014801 249 -LTLHGLVQHYIKLSELEKNRKLND-------LLDALDFNQVVIFVKSVSRAAELNKLLVECN--FPSICIHSGMSQEER 318 (418)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~r 318 (418)
.....+...+.. ....+...+.. .++..+++++||||++.+.++.++..|++.+ ..+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 011122222322 22222222222 2222356799999999999999999999764 567889999999988
Q ss_pred HHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhccccc
Q 014801 319 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 371 (418)
Q Consensus 319 ~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (418)
... ++.++||||+++++|+|+|.. +|| ++ |.+...|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 755 478899999999999999976 555 44 889999999999997
No 71
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=8.2e-35 Score=302.51 Aligned_cols=322 Identities=19% Similarity=0.235 Sum_probs=240.8
Q ss_pred HHHHHHHH-CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 47 ELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 47 ~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
++.+.+.+ .|+ +|++.|+++++.+++|+++++.||||+|||+++++.++..... +.++++++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~---g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK---GKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc---CCeEEEEECHHHHHHHHHHHH
Confidence 44555555 588 7999999999999999999999999999998655544443322 338999999999999999999
Q ss_pred HHHhccC-CCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-----
Q 014801 126 ERFSTYL-PDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----- 196 (418)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~----- 196 (418)
+.++... .++++..++|+.+...+.. .+.++.++|+|+||+.+...+... ...+++++|+||||++..+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccc
Confidence 9987654 1467778889888766543 345566899999999888765532 2267899999999999742
Q ss_pred -----CCCHHHHHH----HHh----------------------hCCCCcc-EEEEEecCCccHHHHHHHhcCCCeEEEEc
Q 014801 197 -----LDMRRDVQE----IFK----------------------MTPHDKQ-VMMFSATLSKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 197 -----~~~~~~~~~----~~~----------------------~~~~~~~-~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
.+|...+.. ++. ..++..+ .+..|||++... . ...++.++..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~-~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-D-RVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-H-HHHHhhcCeEEEec
Confidence 356655543 211 2233445 567999998631 1 22334555555444
Q ss_pred CCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchh---HHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 014801 245 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTR 321 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~ 321 (418)
.. ......+.+.++......+ ..+..++... +..+||||++.+. ++.+++.|.+.|+++..+|++ |...
T Consensus 299 ~~-~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SG-RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CC-CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 33 3455667777776654444 4566777665 4689999999775 589999999999999999984 8889
Q ss_pred HHhhhcCCccEEEEe----cccccCCCCCC-CCEEEEecCCC---Chhhhhhhc-------------ccccCCCCceeEE
Q 014801 322 YKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMPD---SADTYLHRV-------------GRAGRFGTKGLAI 380 (418)
Q Consensus 322 ~~~f~~g~~~vlv~t----~~l~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~~~~g~~~ 380 (418)
++.|.+|+++||||| +.+++|+|+|+ ++.||+++.|. |...|.|-. ||++|.|.++.++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 999999999999999 58999999999 99999999998 777665554 9999999887776
Q ss_pred EEec
Q 014801 381 TFVS 384 (418)
Q Consensus 381 ~~~~ 384 (418)
..+.
T Consensus 451 ~~~~ 454 (1638)
T PRK14701 451 LDVF 454 (1638)
T ss_pred HHhH
Confidence 4333
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.7e-34 Score=273.88 Aligned_cols=320 Identities=18% Similarity=0.150 Sum_probs=230.4
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.++|+|.+++..+..++..++.++||+|||+++.++++..+..+. .++|++|++.|+.|+++++..+...+ ++++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~ 143 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVS 143 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEE
Confidence 457777777776666666899999999999999999876665443 69999999999999999999998887 89988
Q ss_pred EEEcCcc---hHHHHHHhhcCCCcEEEeccHHH-HHHHhc------CCCCCCCccEEEEechhhhccCCC----------
Q 014801 139 VFYGGVN---IKIHKDLLKNECPQIVVGTPGRI-LALARD------KDLSLKNVRHFILDECDKMLESLD---------- 198 (418)
Q Consensus 139 ~~~~~~~---~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~iViDE~h~~~~~~~---------- 198 (418)
.+.++.. ......... ..++|+++||+.| ...++. ....+..+.++|+||||.+.-+..
T Consensus 144 ~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 8776521 111111221 2369999999999 444432 234467899999999998851100
Q ss_pred -----CHHHHHHHHhhC---------------------------------------------------------------
Q 014801 199 -----MRRDVQEIFKMT--------------------------------------------------------------- 210 (418)
Q Consensus 199 -----~~~~~~~~~~~~--------------------------------------------------------------- 210 (418)
.......+...+
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYi 302 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYV 302 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 000000000000
Q ss_pred ------------------------------------------------------CCCccEEEEEecCCccHHHHHHHhcC
Q 014801 211 ------------------------------------------------------PHDKQVMMFSATLSKEIRPVCKKFMQ 236 (418)
Q Consensus 211 ------------------------------------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~ 236 (418)
....++.+||+|...+...+.. ..+
T Consensus 303 V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~-iY~ 381 (762)
T TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE-TYS 381 (762)
T ss_pred EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH-HhC
Confidence 0011678888887655444433 222
Q ss_pred CCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014801 237 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 314 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 314 (418)
-. .+.+ +........-.+..+..+...+...+...+.. ..+.++||||++.+.++.++..|.+.|+++..+|+.+.
T Consensus 382 l~-v~~I-Pt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 382 LS-VVKI-PTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CC-EEEc-CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 22 2223 33333333233334555666777777766654 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccEEEEecccccCCCCC---------CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 315 QEERLTRYKGFKEGNKRILVATDLVGRGIDIE---------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 315 ~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
..++..+...++.| .|+|||+++++|+|++ ++.+|+.++.|..... .|+.||+||.|.+|.++.|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 98888887777777 6999999999999999 8999999999887655 9999999999999999999996
Q ss_pred CCcH
Q 014801 386 ASDS 389 (418)
Q Consensus 386 ~~~~ 389 (418)
.++.
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 5544
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.9e-34 Score=276.39 Aligned_cols=320 Identities=20% Similarity=0.232 Sum_probs=236.5
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
|+ .|++.|..+...+.+|+ +..+.||+|||+++.++++..+..+. .+++++|++.|+.|.++++..+...+ ++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 44 78888888888777665 99999999999999999986655443 79999999999999999999999888 99
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccCC-----------
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL----------- 197 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~~----------- 197 (418)
++..+.|+.+.......... ++|+++|+..+ ...++.. ...+..+.++|+||+|.+.=+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~--~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYE--ADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcC--CCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 99999999883333333332 59999999888 3333332 2346788999999999875110
Q ss_pred ----CCHHHHHHHHhhCC--------------------------------------------------------------
Q 014801 198 ----DMRRDVQEIFKMTP-------------------------------------------------------------- 211 (418)
Q Consensus 198 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 211 (418)
.+......+...+.
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 00000000000000
Q ss_pred -------------------------------------------------------CCccEEEEEecCCccHHHHHHHhcC
Q 014801 212 -------------------------------------------------------HDKQVMMFSATLSKEIRPVCKKFMQ 236 (418)
Q Consensus 212 -------------------------------------------------------~~~~~i~lSAT~~~~~~~~~~~~~~ 236 (418)
...++.+||+|.......+ ....+
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~~Y~ 385 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FEVYN 385 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HHHhC
Confidence 0006778888876544333 33332
Q ss_pred CCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014801 237 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 314 (418)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 314 (418)
-. .+.+ +........-....+......+...+...+.. ..+.++||||++.+.++.++..|.+.++++..+|+.+.
T Consensus 386 l~-v~~I-Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 ME-VVQI-PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred Cc-EEEC-CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 22 2223 33333333223334445666777777777755 36789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccEEEEecccccCCCC---CCCC-----EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 315 QEERLTRYKGFKEGNKRILVATDLVGRGIDI---ERVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 315 ~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
..++..+...+..| +|+|||+++++|+|+ |.+. +||.++.|.|...|.|++||+||.|.+|.++.|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88888887777766 699999999999999 6888 9999999999999999999999999999999999965
Q ss_pred CcH
Q 014801 387 SDS 389 (418)
Q Consensus 387 ~~~ 389 (418)
++.
T Consensus 542 D~l 544 (790)
T PRK09200 542 DDL 544 (790)
T ss_pred HHH
Confidence 444
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.4e-34 Score=270.39 Aligned_cols=317 Identities=20% Similarity=0.231 Sum_probs=235.5
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|++.|..+...+.+|+ +..++||+|||+++.++++-....+. .+.+++|+..|+.|.++++..+...+ ++++.
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~ 129 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVG 129 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEE
Confidence 67777777777666555 99999999999999999854433333 69999999999999999999999888 89999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccCC--------C----C
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL--------D----M 199 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~~--------~----~ 199 (418)
.+.|+.+...+...+. ++|+++||..| ..+++.+ ...+..+.++|+||+|.+.-+. + .
T Consensus 130 ~i~g~~~~~~r~~~y~---~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 130 LILSGMSPEERREAYA---CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred EEeCCCCHHHHHHhcC---CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999988765555443 59999999999 7777765 3467889999999999876210 0 0
Q ss_pred HH-----------------------------------HHHHHHh------------------------------------
Q 014801 200 RR-----------------------------------DVQEIFK------------------------------------ 208 (418)
Q Consensus 200 ~~-----------------------------------~~~~~~~------------------------------------ 208 (418)
.. .++.++.
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 00 0000000
Q ss_pred -------------------------------------------------hCCCCccEEEEEecCCccHHHHHHHhcCCCe
Q 014801 209 -------------------------------------------------MTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 239 (418)
Q Consensus 209 -------------------------------------------------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (418)
++....++.+||+|...+...+..-+ +-.
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l~- 364 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY-NLE- 364 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh-CCC-
Confidence 00000167788888865544333333 222
Q ss_pred EEEEcCCcccccccceEEEEEechhhHHHHHHHHH-h-hcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHH
Q 014801 240 EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-D-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 317 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 317 (418)
.+.+....+...... +..+..+...+...+...+ . ...+.++||||++.+.++.++..|.+.|+++..+|+. +.+
T Consensus 365 vv~IPtnkp~~R~d~-~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~ 441 (745)
T TIGR00963 365 VVVVPTNRPVIRKDL-SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHE 441 (745)
T ss_pred EEEeCCCCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHH
Confidence 222333332222332 2333444455555554444 2 2367899999999999999999999999999999998 778
Q ss_pred HHHHHHhhhcCCccEEEEecccccCCCCCC-------CCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 318 RLTRYKGFKEGNKRILVATDLVGRGIDIER-------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 318 r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|...+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..|++..++.
T Consensus 442 rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 442 REAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 888899999999999999999999999998 459999999999999999999999999999999999966554
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.5e-33 Score=258.96 Aligned_cols=325 Identities=21% Similarity=0.259 Sum_probs=245.1
Q ss_pred CCHHHHHHH-HHCCCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 44 LKPELLRAI-VDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 44 l~~~~~~~l-~~~~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.+.++++.+ ....| +||..|++++..+... .+-++.|+.|||||.+++++++..+..+. ++.+.+||.-
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEI 322 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEI 322 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHH
Confidence 334444443 44455 8999999999998873 34799999999999999999999988766 8999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
|+.|.++.+.++.... ++++..++|...-..+.. .+.++..+|+|+|+.-+. +.+.+.++.++|+||-|++
T Consensus 323 LA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 323 LAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccccc
Confidence 9999999999999888 899999999877655444 456788999999977664 4577889999999999977
Q ss_pred ccCCCCHHHHHHHHhhCCC-CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHH
Q 014801 194 LESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 272 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (418)
.- ..+ ..+...+. .+.++.|||||-+.. ++-..+++.. +....+.+.-...+....+. .....+.+..
T Consensus 397 GV----~QR--~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDld-vS~IdElP~GRkpI~T~~i~--~~~~~~v~e~ 465 (677)
T COG1200 397 GV----HQR--LALREKGEQNPHVLVMTATPIPRT--LALTAFGDLD-VSIIDELPPGRKPITTVVIP--HERRPEVYER 465 (677)
T ss_pred cH----HHH--HHHHHhCCCCCcEEEEeCCCchHH--HHHHHhcccc-chhhccCCCCCCceEEEEec--cccHHHHHHH
Confidence 54 111 12222333 678999999997753 3334444322 22223333333334333333 3333333433
Q ss_pred HHhhc-CCCeEEEEeCCchhHH--------HHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccccc
Q 014801 273 LLDAL-DFNQVVIFVKSVSRAA--------ELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 341 (418)
Q Consensus 273 ~~~~~-~~~~~lif~~~~~~~~--------~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~ 341 (418)
+..+. .++++.+.|+-+++.+ .+++.|+.. ++++..+||.|+.+++.+++..|++|+++|||||.+++.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 43333 6689999998776554 455556543 567899999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCC-CChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 342 GIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 342 G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|+|+|+++++|+.+.- ...+++.|..||+||.+.++.|++++.+....
T Consensus 546 GVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~ 594 (677)
T COG1200 546 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSE 594 (677)
T ss_pred cccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCCh
Confidence 9999999999887754 47899999999999999999999999977643
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-33 Score=277.22 Aligned_cols=329 Identities=19% Similarity=0.220 Sum_probs=251.2
Q ss_pred HCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 54 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 54 ~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
..|...+++-|.+++...+.|++++|.+|||.||+++|.++++-.-. -+++|.|..+|.+.+...+...
T Consensus 259 ~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L~~~----- 327 (941)
T KOG0351|consen 259 VFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHLSKK----- 327 (941)
T ss_pred HhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhhhhc-----
Confidence 44888999999999999999999999999999999999877765543 6899999999988765555332
Q ss_pred CceEEEEEcCcchHHHHHH---hhcC--CCcEEEeccHHHHHH--HhcCCCCCCC---ccEEEEechhhhccC-CCCHHH
Q 014801 134 DIKVAVFYGGVNIKIHKDL---LKNE--CPQIVVGTPGRILAL--ARDKDLSLKN---VRHFILDECDKMLES-LDMRRD 202 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---~~~~--~~~i~v~T~~~l~~~--~~~~~~~~~~---~~~iViDE~h~~~~~-~~~~~~ 202 (418)
++....+.++.....+... +.++ ..+|++.|||++... +......+.. +.++||||||+...+ ++|++.
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 8899999988777644433 3344 678999999998642 1212223333 788999999999877 778877
Q ss_pred HHHHH---hhCCCCccEEEEEecCCccHHHHHHHhcCCCeE-EEEcCCcccccccceEEEEEech--hhHHHHHHHHHhh
Q 014801 203 VQEIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPME-IYVDDEAKLTLHGLVQHYIKLSE--LEKNRKLNDLLDA 276 (418)
Q Consensus 203 ~~~~~---~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 276 (418)
+.++. ...+ ...++++|||....+...+-..++-... +......+ ..+. ..+.... ......+......
T Consensus 408 Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR---~NL~-yeV~~k~~~~~~~~~~~~~~~~ 482 (941)
T KOG0351|consen 408 YKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNR---PNLK-YEVSPKTDKDALLDILEESKLR 482 (941)
T ss_pred HHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCC---CCce-EEEEeccCccchHHHHHHhhhc
Confidence 66553 3333 3679999999988776655554433222 11111111 1111 1122222 2223334444445
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
.+....||+|.++..|+.++..|.+.+..+..||++|+..+|..+...|..++++|++||=+.+.|+|-|+++.||||..
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHH
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 398 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (418)
|.|...|.|-.|||||.|....|++|++..+-.+....+...
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999999999999999976544544444443
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-34 Score=247.81 Aligned_cols=323 Identities=16% Similarity=0.248 Sum_probs=240.3
Q ss_pred HHHHHHHC-CCCC-CcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 48 LLRAIVDS-GFEH-PSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 48 ~~~~l~~~-~~~~-l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
+.++|.+. |+.+ -++.|..|+..+.. ++++.|++|||+||+++|.++.+-.-. -+|++.|..+|+....+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g------ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG------ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC------eEEEehHHHHHHHHHHHH
Confidence 44555544 4443 36999999988776 678999999999999999998876543 589999999999998888
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHhhc-----CCCcEEEeccHHHHH-----HHhcCCCCCCCccEEEEechhhhc
Q 014801 125 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKN-----ECPQIVVGTPGRILA-----LARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
+.++ .+++..+.+-.+..++.+.+.+ ....+++.|||+... +++ ...+-..+.++|+||+|+++
T Consensus 81 L~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 81 LKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHh
Confidence 8776 6666666666555555544322 335799999986532 222 11223457889999999998
Q ss_pred cC-CCCHHHHHHH---HhhCCCCccEEEEEecCCccHHHHHH--HhcCCCeEEEEcCCcccccccceEEEEEe----chh
Q 014801 195 ES-LDMRRDVQEI---FKMTPHDKQVMMFSATLSKEIRPVCK--KFMQDPMEIYVDDEAKLTLHGLVQHYIKL----SEL 264 (418)
Q Consensus 195 ~~-~~~~~~~~~~---~~~~~~~~~~i~lSAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 264 (418)
.+ ++|++.+..+ .... .+...+++|||....+...+- ..+.+|+.++-.+.....+ ++.. .-.
T Consensus 155 QWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NL------FYD~~~K~~I~ 227 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNL------FYDNHMKSFIT 227 (641)
T ss_pred hhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhh------hHHHHHHHHhh
Confidence 76 7777776554 3333 356699999999887665433 3455665544333222111 1110 011
Q ss_pred hHHHHHHHHHhhc-------------CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCcc
Q 014801 265 EKNRKLNDLLDAL-------------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 331 (418)
Q Consensus 265 ~~~~~l~~~~~~~-------------~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 331 (418)
+....|.++.... ..+-.||||.++++++.++-.|...|+++..+|+++...+|.++.+.|.++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 1222333332221 124579999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 332 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 332 vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|+++|-..+.|+|-|+++.|||++++.|...|.|-.|||||.|.+..|-++++.+|..
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchH
Confidence 9999999999999999999999999999999999999999999999999999955443
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.1e-32 Score=268.75 Aligned_cols=336 Identities=16% Similarity=0.183 Sum_probs=222.2
Q ss_pred CCcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 59 HPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
.|.|||..++..+.. ..++++..++|.|||..+.+.+...+..+... ++|||||. +|..||..++.+.. ++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~-rvLIVvP~-sL~~QW~~El~~kF----~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAE-RVLILVPE-TLQHQWLVEMLRRF----NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCC-cEEEEcCH-HHHHHHHHHHHHHh----CCC
Confidence 589999999888765 35799999999999988766665555444333 79999996 89999999997554 555
Q ss_pred EEEEEcCcchHHHHH--HhhcCCCcEEEeccHHHHHHH-hcCCCCCCCccEEEEechhhhccCCC-CHHHHHHHHhhCCC
Q 014801 137 VAVFYGGVNIKIHKD--LLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLD-MRRDVQEIFKMTPH 212 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~--~~~~~~~~i~v~T~~~l~~~~-~~~~~~~~~~~~iViDE~h~~~~~~~-~~~~~~~~~~~~~~ 212 (418)
+..+.++........ ... ...+++|++++.+..-- ....+.-..+++||+||||++....+ ....+..+......
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred eEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 555444321111000 000 12489999999876411 11112234688999999999974211 12223333333334
Q ss_pred CccEEEEEecCCcc-------------------HHHHHH------------------------------HhcCCC-----
Q 014801 213 DKQVMMFSATLSKE-------------------IRPVCK------------------------------KFMQDP----- 238 (418)
Q Consensus 213 ~~~~i~lSAT~~~~-------------------~~~~~~------------------------------~~~~~~----- 238 (418)
...++++||||-.. ...+.. .++.+.
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 45789999998310 000000 000000
Q ss_pred ----------------------------eEEEEcCCccccc----ccceEEE-EEe------------------------
Q 014801 239 ----------------------------MEIYVDDEAKLTL----HGLVQHY-IKL------------------------ 261 (418)
Q Consensus 239 ----------------------------~~~~~~~~~~~~~----~~~~~~~-~~~------------------------ 261 (418)
..+.+. ..+... ......+ ...
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~R-ntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFR-NTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEe-ccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 000000 000000 0000000 000
Q ss_pred ------------chhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH-HhCCCCeEEecCCCCHHHHHHHHHhhhcC
Q 014801 262 ------------SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL-VECNFPSICIHSGMSQEERLTRYKGFKEG 328 (418)
Q Consensus 262 ------------~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 328 (418)
....+...+.++++...+.|+||||++.+.+..+.+.| .+.|+++..+||+++..+|..+++.|+++
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE 543 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC
Confidence 11123445667777777889999999999999999999 46799999999999999999999999974
Q ss_pred --CccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCc
Q 014801 329 --NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 403 (418)
Q Consensus 329 --~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
..+|||||++.++|+|++.+++||+|+.|+|+..|.||+||++|.|+++.+.+++-.. +......+...+...+
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQERLFRWYHEGL 619 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHHHHHHHHhhhc
Confidence 5999999999999999999999999999999999999999999999999887776533 3333444555444433
No 79
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-32 Score=256.62 Aligned_cols=294 Identities=20% Similarity=0.234 Sum_probs=202.5
Q ss_pred CCCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 57 FEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
..+|+++|++++.++.. ++..++++|||+|||.+++..+..... ++|||||+++|+.||.+.+.+....
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~- 106 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL- 106 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC-
Confidence 34799999999999998 889999999999999886654444433 4999999999999998777766422
Q ss_pred CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC
Q 014801 133 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 212 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~ 212 (418)
...++.+.|+..... . ..|.|+|.+.+.....-.......+++||+||||++.. .....+......
T Consensus 107 -~~~~g~~~~~~~~~~------~--~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a-----~~~~~~~~~~~~ 172 (442)
T COG1061 107 -NDEIGIYGGGEKELE------P--AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA-----PSYRRILELLSA 172 (442)
T ss_pred -ccccceecCceeccC------C--CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc-----HHHHHHHHhhhc
Confidence 123444444322110 0 26999999999874211223334799999999998765 223333333332
Q ss_pred CccEEEEEecCCccHHH---HHHHhcCCCeEEEEcCCcccc---cccceEEEEEe-------------------------
Q 014801 213 DKQVMMFSATLSKEIRP---VCKKFMQDPMEIYVDDEAKLT---LHGLVQHYIKL------------------------- 261 (418)
Q Consensus 213 ~~~~i~lSAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------------------- 261 (418)
...++++|||++..... .+....+ +..+......... +.......+..
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 22289999998643211 1111111 1122111110000 00000000000
Q ss_pred -------------chhhHHHHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc
Q 014801 262 -------------SELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE 327 (418)
Q Consensus 262 -------------~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (418)
....+...+..++..+ .+.+++||+.+..++..++..+...+. +..+.+..+..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0111222333333333 467999999999999999999988777 8889999999999999999999
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC
Q 014801 328 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 373 (418)
Q Consensus 328 g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (418)
|++++|+++.++.+|+|+|+++++|......|...|.||+||+.|.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999993
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=8.1e-32 Score=263.95 Aligned_cols=342 Identities=20% Similarity=0.203 Sum_probs=226.2
Q ss_pred CCCcHHHHHhHHhhhcC---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 58 EHPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
..|++.|+++++.+..+ +++++.|+||+|||.+++.++...+..+ .++|+++|+++|+.|+.+.+++.. +
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f----g 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF----G 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh----C
Confidence 36899999999999874 7799999999999999987776666543 389999999999999999998754 6
Q ss_pred ceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH-----HHHHHH
Q 014801 135 IKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-----RDVQEI 206 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-----~~~~~~ 206 (418)
..+..++|+.+...+... ...+..+|+|+|+..+. ..+.++++||+||+|......... ..+. .
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-V 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-H
Confidence 788899998776555443 34456799999998764 457889999999999765321111 1222 2
Q ss_pred HhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechh--------hHHHHHHHHHhhc-
Q 014801 207 FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL--------EKNRKLNDLLDAL- 277 (418)
Q Consensus 207 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~- 277 (418)
......+.+++++|||++.+....+. .+............ .........+..... -....+..+.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~-~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAG-GARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccc-cCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 22334567899999998755443332 11111111111100 000011111111110 0012222233333
Q ss_pred CCCeEEEEeCCch------------------------------------------------------------hHHHHHH
Q 014801 278 DFNQVVIFVKSVS------------------------------------------------------------RAAELNK 297 (418)
Q Consensus 278 ~~~~~lif~~~~~------------------------------------------------------------~~~~~~~ 297 (418)
.++++|+|+|.+. -++.+++
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 3458888877532 3456666
Q ss_pred HHHhC--CCCeEEecCCCC--HHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCC------------Chh
Q 014801 298 LLVEC--NFPSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SAD 361 (418)
Q Consensus 298 ~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~------------s~~ 361 (418)
.|.+. +.++..+|+++. ..++..+++.|.+|+.+|||+|++++.|+|+|+++.|+.++... ...
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 66665 667888888875 46788999999999999999999999999999999998776542 235
Q ss_pred hhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCCC
Q 014801 362 TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 417 (418)
Q Consensus 362 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (418)
.+.|++||+||.+..|.+++.....+...+.......+..-...--+.....+|||
T Consensus 525 ~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PP 580 (679)
T PRK05580 525 LLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPP 580 (679)
T ss_pred HHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999999998887655544333323222222222223335555666
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=9.6e-32 Score=274.60 Aligned_cols=294 Identities=17% Similarity=0.275 Sum_probs=213.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 47 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 47 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
++.+.+.......|+++|+.+++.++.|++++++||||+|||.. .+++...+... +++++|++||++|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f-~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTF-GLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHH
Confidence 35555555445589999999999999999999999999999974 44444333222 3489999999999999999999
Q ss_pred HHhccCCCceE---EEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC----
Q 014801 127 RFSTYLPDIKV---AVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES---- 196 (418)
Q Consensus 127 ~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~---- 196 (418)
.++... ++.. ..++|+.+...+.. .+.++.++|+|+||+.+...+.... . +++++|+||||.+...
T Consensus 143 ~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 143 SLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccH
Confidence 998765 4443 35678877665433 3445567999999999987766422 2 8999999999999863
Q ss_pred ------CCCHHH-HHHHH----------------------hhCCCCcc--EEEEEecC-CccHHHHHHHhcCCCeEEEEc
Q 014801 197 ------LDMRRD-VQEIF----------------------KMTPHDKQ--VMMFSATL-SKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 197 ------~~~~~~-~~~~~----------------------~~~~~~~~--~i~lSAT~-~~~~~~~~~~~~~~~~~~~~~ 244 (418)
.+|... +..++ ...+...| ++++|||. +..... .++.+...+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 245432 22221 12233333 56789994 544332 233343333333
Q ss_pred CCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCc---hhHHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 014801 245 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV---SRAAELNKLLVECNFPSICIHSGMSQEERLTR 321 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~ 321 (418)
.. ......+.+.+..... +...+..++... +.++||||++. +.++.+++.|.+.|+++..+||+++. ..
T Consensus 296 ~~-~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~ 367 (1171)
T TIGR01054 296 GG-SDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----ED 367 (1171)
T ss_pred Cc-cccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HH
Confidence 32 2344556666654433 234566666655 36899999999 99999999999999999999999873 57
Q ss_pred HHhhhcCCccEEEEe----cccccCCCCCC-CCEEEEecCCC
Q 014801 322 YKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMPD 358 (418)
Q Consensus 322 ~~~f~~g~~~vlv~t----~~l~~G~d~~~-~~~vi~~~~~~ 358 (418)
++.|++|+++||||| +++++|+|+|+ +++||+++.|.
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 899999999999995 89999999999 89999999886
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=4.3e-32 Score=232.36 Aligned_cols=331 Identities=20% Similarity=0.252 Sum_probs=246.3
Q ss_pred CCCCCHHHHHHHHHC-CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 41 DFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 41 ~~~l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
+|+++.+..+.|... ...+++|.|..+++..+.++++++..|||.||+++|.++++-.-. .+|+++|..+|.+
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg------~alvi~plislme 148 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADG------FALVICPLISLME 148 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCC------ceEeechhHHHHH
Confidence 456777777777654 556889999999999999999999999999999999998876543 6899999999998
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHhh--cCCCcEEEeccHHHHH------HHhcCCCCCCCccEEEEe
Q 014801 120 QICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLK--NECPQIVVGTPGRILA------LARDKDLSLKNVRHFILD 188 (418)
Q Consensus 120 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~iViD 188 (418)
...-.++.+ |+....+..+.+.++.. ..+. +....+++.||+++.. -+++ .+....+.+|-+|
T Consensus 149 dqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaid 222 (695)
T KOG0353|consen 149 DQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeec
Confidence 887777776 66555555544433222 2222 2445799999998753 2222 2345678899999
Q ss_pred chhhhccC-CCCHHHHHH--HHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh
Q 014801 189 ECDKMLES-LDMRRDVQE--IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE 265 (418)
Q Consensus 189 E~h~~~~~-~~~~~~~~~--~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
|+|+...+ ++|+..+.. ++.+--++.+++++|||..+++...++..+.......+.... ....+. +.+......
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f--nr~nl~-yev~qkp~n 299 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF--NRPNLK-YEVRQKPGN 299 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc--CCCCce-eEeeeCCCC
Confidence 99999876 566655432 233333456699999999988776666554432222211111 111111 111222222
Q ss_pred HHHHHHHHHhh----cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccccc
Q 014801 266 KNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 341 (418)
Q Consensus 266 ~~~~l~~~~~~----~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~ 341 (418)
..+.+.++.+. ..+...||||-+++.++.++..|+.+|+.+..+|+.+.++++.-.-+.|..|+++|+|+|-..+.
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 33333333332 24567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhhh-------------------------------------------hcccccCCCCcee
Q 014801 342 GIDIERVNIVINYDMPDSADTYLH-------------------------------------------RVGRAGRFGTKGL 378 (418)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~~~~g~ 378 (418)
|+|-|+++.||+...|.|...|.| -.||+||.+++..
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 6799999999999
Q ss_pred EEEEecCC
Q 014801 379 AITFVSSA 386 (418)
Q Consensus 379 ~~~~~~~~ 386 (418)
|++++.-.
T Consensus 460 cilyy~~~ 467 (695)
T KOG0353|consen 460 CILYYGFA 467 (695)
T ss_pred EEEEechH
Confidence 99999844
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.4e-30 Score=254.76 Aligned_cols=325 Identities=21% Similarity=0.194 Sum_probs=248.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc----C--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 41 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL----G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 41 ~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~----~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
.|..+.+.++.+...=..+-|+-|..|+..+.+ + .|-+|||+.|-|||-+++=++......++ +|.++|||
T Consensus 576 af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPT 652 (1139)
T COG1197 576 AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPT 652 (1139)
T ss_pred CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEccc
Confidence 345666677777765333679999999999887 2 46899999999999998888888877664 99999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechh
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 191 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h 191 (418)
.-|++|.+++|+.-...+ .+++..+.--.+.++.. +.+.++..||+|+|+.-| ...+.+.+++++||||=|
T Consensus 653 TlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 653 TLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 999999999999877777 68888776655555444 446678899999995544 346788999999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 271 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (418)
++.- .-...++.+. .+.-++-|||||-+..-.+.-.=.++.-.+...+..+ ..++.|+...... -.-.
T Consensus 727 RFGV--k~KEkLK~Lr----~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R----~pV~T~V~~~d~~--~ire 794 (1139)
T COG1197 727 RFGV--KHKEKLKELR----ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR----LPVKTFVSEYDDL--LIRE 794 (1139)
T ss_pred hcCc--cHHHHHHHHh----ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC----cceEEEEecCChH--HHHH
Confidence 8764 3334444444 5566999999998876666554444433333223222 1233333322211 1112
Q ss_pred HHHhh-cCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 272 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 272 ~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
.++++ .+++++....|.++..+.+++.|++. ...+.+.||.|+..+-+.++..|.+|+++|||||.+++.|+|+|++
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnA 874 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNA 874 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCC
Confidence 22222 36689999999999999999999886 4567889999999999999999999999999999999999999999
Q ss_pred CEEEEecCC-CChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 349 NIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 349 ~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
|.+|+.+.. ...+++.|..||+||.++.+.++.++-+.
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999887765 47899999999999999999999999853
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-31 Score=250.49 Aligned_cols=322 Identities=20% Similarity=0.215 Sum_probs=206.6
Q ss_pred EEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hh
Q 014801 78 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LK 154 (418)
Q Consensus 78 ~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 154 (418)
++.|+||+|||.+++..+...+..+. ++|+++|+++|+.|+.+.+++.. +.++..++++.+..++... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 47899999999998766655554433 79999999999999999998764 5678888888766554333 34
Q ss_pred cCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC----CH-HHHHHHHhhCCCCccEEEEEecCCccHHH
Q 014801 155 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD----MR-RDVQEIFKMTPHDKQVMMFSATLSKEIRP 229 (418)
Q Consensus 155 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~----~~-~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (418)
++..+|+|+|+..+. ..+.++++|||||.|....... +. ..+...... ..+.+++++|||++.+...
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHH
Confidence 466799999998764 3578899999999998764211 11 122222332 3467799999998755333
Q ss_pred HHHHhcCCCeEEEEcCCcccccccceEEEEEechhh-----HHHHHHHHHhhc-CCCeEEEEeCCchh------------
Q 014801 230 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-----KNRKLNDLLDAL-DFNQVVIFVKSVSR------------ 291 (418)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~-~~~~~lif~~~~~~------------ 291 (418)
.+. .+. ...................++...... ....+..+.+.. .++++|||+|.+..
T Consensus 146 ~~~--~g~-~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 146 NAK--QKA-YRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHh--cCC-eEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 321 111 111111100000001111111111111 012222332333 34689999876543
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCCeEEecCCCCHHHH--H
Q 014801 292 ------------------------------------------------AAELNKLLVEC--NFPSICIHSGMSQEER--L 319 (418)
Q Consensus 292 ------------------------------------------------~~~~~~~L~~~--~~~~~~~~~~~~~~~r--~ 319 (418)
.+.+.+.|.+. +.++..+|++++...+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46677777765 5678888998776554 8
Q ss_pred HHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCC------------ChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 320 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 320 ~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
.+++.|.+|+.+|||+|++++.|+|+|+++.|+.++... ....+.|++||+||.+..|.+++.....+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999987665442 24678999999999999999998776555
Q ss_pred cHHHHHHHHHHhccCccccCcccccCCCCC
Q 014801 388 DSDILNQVQARFEVDIKELPEQIDTSTYMP 417 (418)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (418)
...+.......++......-+......|||
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PP 412 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPP 412 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCc
Confidence 543333323222222222223334455665
No 85
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=233.16 Aligned_cols=278 Identities=28% Similarity=0.486 Sum_probs=212.8
Q ss_pred CeeEEEecCcHHHHHHHHHHHHHHhccC--CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 105 QVTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 105 ~~~~lii~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
.++.+|+-|+++|++|....+++|-... |.++...+.|+.-...+...+.++ .+|+|+||.++...+....+.+..+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhccceeeeee
Confidence 4678999999999999999887765444 344555778888888888888887 5999999999999999999999999
Q ss_pred cEEEEechhhhccCCCCHHHHHHHHhhCCC------CccEEEEEecCCc-cHHHHHHHhcCCCeEEEEcCCcccccccce
Q 014801 183 RHFILDECDKMLESLDMRRDVQEIFKMTPH------DKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 255 (418)
Q Consensus 183 ~~iViDE~h~~~~~~~~~~~~~~~~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
+++|+||++.+.. .++...+.++...++. ..|.+.+|||+.. ++....++.+.-|..+....... +....
T Consensus 365 rFlvlDead~lL~-qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~--vpetv 441 (725)
T KOG0349|consen 365 RFLVLDEADLLLG-QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL--VPETV 441 (725)
T ss_pred EEEEecchhhhhh-cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc--cchhh
Confidence 9999999999987 6777777777665542 4688999999854 23334444444333332221111 11111
Q ss_pred EEEEEe--------------------------------ch---hhHH-----HHHHHHHhhcCCCeEEEEeCCchhHHHH
Q 014801 256 QHYIKL--------------------------------SE---LEKN-----RKLNDLLDALDFNQVVIFVKSVSRAAEL 295 (418)
Q Consensus 256 ~~~~~~--------------------------------~~---~~~~-----~~l~~~~~~~~~~~~lif~~~~~~~~~~ 295 (418)
.++... +. ++.. +.-...++.+...++||||.+...|..+
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHH
Confidence 111100 00 0000 1112223344567999999999999999
Q ss_pred HHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccC
Q 014801 296 NKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 372 (418)
Q Consensus 296 ~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 372 (418)
.+++.+. .+.|+++|++..+.+|++.++.|++++++.||||++.++|+|+..+-.+|....|.+...|++|+||+||
T Consensus 522 er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccch
Confidence 9999886 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEecCC
Q 014801 373 FGTKGLAITFVSSA 386 (418)
Q Consensus 373 ~~~~g~~~~~~~~~ 386 (418)
..+-|.++.++...
T Consensus 602 aermglaislvat~ 615 (725)
T KOG0349|consen 602 AERMGLAISLVATV 615 (725)
T ss_pred hhhcceeEEEeecc
Confidence 99999999888743
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=7.5e-31 Score=247.72 Aligned_cols=329 Identities=19% Similarity=0.228 Sum_probs=234.2
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
.+|..+|++|+..+.+|.+++|.|+|++|||.++..++.-.-.+.. +++|-.|-++|-+|-.+.|+.-+. +.
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T---R~iYTSPIKALSNQKfRDFk~tF~---Dv-- 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT---RTIYTSPIKALSNQKFRDFKETFG---DV-- 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc---ceEecchhhhhccchHHHHHHhcc---cc--
Confidence 3899999999999999999999999999999998876665444333 899999999999999999887543 22
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
+.++|+..... ...++|+|.|.|.+++.++.--++++.+||+||+|.+.+ ...+-.++.++-+++.+.++|
T Consensus 368 gLlTGDvqinP--------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND-~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 368 GLLTGDVQINP--------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND-VERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ceeecceeeCC--------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc-ccccccceeeeeeccccceEE
Confidence 27788765442 258999999999999998877788999999999998776 577778889999999999999
Q ss_pred EEEecCCccHH--HHHHHhcCCCeEEEEcCCcccccccceEEEEEec---------------------------------
Q 014801 218 MFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS--------------------------------- 262 (418)
Q Consensus 218 ~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 262 (418)
++|||.|+..+ +|+-+.....+.+. ....+ ... ..+++.+.
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyVi-ST~kR--PVP-LEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVI-STSKR--PVP-LEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEE-ecCCC--ccc-eEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999997633 22222222211111 10000 000 00000000
Q ss_pred --------------------------------hhhH----HHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCC--
Q 014801 263 --------------------------------ELEK----NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF-- 304 (418)
Q Consensus 263 --------------------------------~~~~----~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~-- 304 (418)
...+ .-.+...+....--++||||-+++.|++.+++|.....
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 0000 11122222222334799999999999999999875321
Q ss_pred -------------------------------------CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 305 -------------------------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 305 -------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
...++||++-+--+.-++..|+.|-++||+||.+++.|+|.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 3667899999999999999999999999999999999999996
Q ss_pred CCEEEEecCC---------CChhhhhhhcccccCCCC--ceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 348 VNIVINYDMP---------DSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 348 ~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
-.+|+ -+.. -.+-+|.||.|||||.|- .|.++++.... ..-...+.+........+.+|+
T Consensus 675 RtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~--vp~~a~l~~li~G~~~~L~SQF 745 (1248)
T KOG0947|consen 675 RTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS--VPSAATLKRLIMGGPTRLESQF 745 (1248)
T ss_pred eeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC--CCCHHHHhhHhcCCCchhhhhh
Confidence 55555 2222 268899999999999884 47777666533 2223445555555555555544
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.98 E-value=5.6e-30 Score=252.75 Aligned_cols=313 Identities=20% Similarity=0.224 Sum_probs=201.8
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhcc-CCCc
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDI 135 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~ 135 (418)
..+|+|+|+.+.........++|.+|||+|||.++++++...+..+. ..+++|..||+++++|+++++.++... ++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34899999988554334566899999999999998877665554333 338999999999999999998865432 2234
Q ss_pred eEEEEEcCcchHHHH---------------------HHhhc-----CCCcEEEeccHHHHHHHhc-CCCCCCC----ccE
Q 014801 136 KVAVFYGGVNIKIHK---------------------DLLKN-----ECPQIVVGTPGRILALARD-KDLSLKN----VRH 184 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~---------------------~~~~~-----~~~~i~v~T~~~l~~~~~~-~~~~~~~----~~~ 184 (418)
++...+|........ ..+.. -..+|+|+|.++++...-. ....+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 666777654321100 11110 1158999999998753322 2112222 357
Q ss_pred EEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccHHHHHHHhcCCC--------eEEE--EcCC--ccccc
Q 014801 185 FILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDP--------MEIY--VDDE--AKLTL 251 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~--------~~~~--~~~~--~~~~~ 251 (418)
|||||+|.+.. .....+..++... ....++|+||||+|...+..+...+... +... .... .....
T Consensus 443 vIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 99999998754 2233344444332 2346799999999987665443322110 0000 0000 00000
Q ss_pred cc-----ceEEEEEe-----ch-hhHHHHHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCC---CCeEEecCCCCHH
Q 014801 252 HG-----LVQHYIKL-----SE-LEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---FPSICIHSGMSQE 316 (418)
Q Consensus 252 ~~-----~~~~~~~~-----~~-~~~~~~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~---~~~~~~~~~~~~~ 316 (418)
.. .....+.. .. ......+..++.. ..+++++||||+++.++.+++.|++.+ .++..+|+.++..
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 00 00111111 11 1122334444443 356789999999999999999998764 5789999999999
Q ss_pred HHH----HHHHhh-hcCC---ccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCC
Q 014801 317 ERL----TRYKGF-KEGN---KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 375 (418)
Q Consensus 317 ~r~----~~~~~f-~~g~---~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 375 (418)
+|. ++++.| ++|+ .+|||+|++++.|+|+ +++++|....| .+.++||+||++|.++
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 984 566677 5565 4799999999999999 58999887766 6789999999999875
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.8e-30 Score=251.69 Aligned_cols=339 Identities=18% Similarity=0.210 Sum_probs=243.7
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
+| +|.++|++++..+.++.+++|+||||+|||.++..++...+..+. +++|.+|.++|.+|.++++....... .-
T Consensus 117 ~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 117 PF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred CC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 44 899999999999999999999999999999999988888887766 69999999999999999987654322 22
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCcc
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 215 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 215 (418)
-++.++|+.... +...++|+|.|.|.+++.+....+..+..||+||+|.+.+ ...+-.++..+-.++.+.+
T Consensus 192 ~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D-~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 192 MVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGD-RERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hccceecceeeC--------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccc-cccchhHHHHHHhcCCCCc
Confidence 357778876654 3368999999999999999888899999999999998877 6777888999999999999
Q ss_pred EEEEEecCCccHH--HHHHHhcCCCeEEEEcCCcccccccceEEEEE-------echh----------------------
Q 014801 216 VMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK-------LSEL---------------------- 264 (418)
Q Consensus 216 ~i~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---------------------- 264 (418)
++++|||+++..+ .|+...-..+..+.....-+. .+..++.. ..+.
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rpv---PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPV---PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCC---CeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 9999999997533 233322233333322111110 00111000 0000
Q ss_pred -------------------------hHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC-----------------
Q 014801 265 -------------------------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----------------- 302 (418)
Q Consensus 265 -------------------------~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~----------------- 302 (418)
.+...+...+...+.-++|+|+-++..|+..+..+...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 00011222333334468999999999999888776521
Q ss_pred -----------CC-------------CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----e
Q 014801 303 -----------NF-------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----Y 354 (418)
Q Consensus 303 -----------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~ 354 (418)
+. ...++|+++=+..+..+.+.|+.|-++|+++|.+++.|+|.|.-++|+. +
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~ 499 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKF 499 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEe
Confidence 11 1346799999999999999999999999999999999999996666551 1
Q ss_pred c----CCCChhhhhhhcccccCCCCc--eeEEEEecCCCcHHHHHHHHHHhccCccccCcccccC
Q 014801 355 D----MPDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 413 (418)
Q Consensus 355 ~----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (418)
+ ..-++.+|.|+.|||||.|.. |.++++..+.... .+............+.+++--+
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~--~~e~~~l~~~~~~~L~s~f~~s 562 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESE--PSEAAGLASGKLDPLRSQFRLS 562 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCC--hHHHHHhhcCCCccchhheecc
Confidence 1 123789999999999999866 7777774433332 3444444455555555555443
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1e-29 Score=216.07 Aligned_cols=200 Identities=42% Similarity=0.735 Sum_probs=177.0
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC--CCCeeEEEecCcHH
Q 014801 39 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRE 116 (418)
Q Consensus 39 ~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~--~~~~~~lii~P~~~ 116 (418)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999888776 45568999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+...++.+.... ++++..+.|+.........+. +..+|+|+|++.+...+.+....+.+++++|+||+|.+.+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~- 157 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD- 157 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-
Confidence 9999999999987665 788899999887766665555 3469999999999998888878889999999999999885
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEE
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 241 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (418)
..+...+..+...+...++++++|||+++.....+..+..++..+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 677888888888888889999999999999888888888877653
No 90
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1.4e-29 Score=254.93 Aligned_cols=298 Identities=19% Similarity=0.257 Sum_probs=198.4
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhhHHHHH-hhhccCCCCCCeeEEEecCcH----HHHHHHHHHHHHHhccCCCce
Q 014801 62 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLS-TLQQTEPNPGQVTALVLCHTR----ELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 62 ~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~-~~~~~~~~~~~~~~lii~P~~----~l~~q~~~~~~~~~~~~~~~~ 136 (418)
.+-.+.+..+..++.++|+|+||||||+. ++ ++.....+..+ .+++.-|++ +++.++++++..-. +-.
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g-~I~~TQPRRlAArsLA~RVA~El~~~l----G~~ 149 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKG-LIGHTQPRRLAARTVANRIAEELETEL----GGC 149 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCC-ceeeCCCcHHHHHHHHHHHHHHHhhhh----cce
Confidence 34456666666777889999999999984 34 33323222222 444455754 66666666665422 222
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh-hccCCCCHHH-HHHHHhhCCCCc
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDK 214 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~~~-~~~~~~~~~~~~ 214 (418)
++.-.. ... .......|+++|++.|+..+.... .+.++++|||||+|. ..+ .++... +..+.. ..++.
T Consensus 150 VGY~vr---f~~----~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn-~DfLLg~Lk~lL~-~rpdl 219 (1294)
T PRK11131 150 VGYKVR---FND----QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN-IDFILGYLKELLP-RRPDL 219 (1294)
T ss_pred eceeec---Ccc----ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccc-cchHHHHHHHhhh-cCCCc
Confidence 222111 111 112236999999999999887654 589999999999995 444 455443 333322 22467
Q ss_pred cEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh---HHHHHHHHH------hhcCCCeEEEE
Q 014801 215 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE---KNRKLNDLL------DALDFNQVVIF 285 (418)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~------~~~~~~~~lif 285 (418)
|+|++|||++. ..+.+.+...+. +.+.... ..+...|....... +.+.+..++ .....+.+|||
T Consensus 220 KvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 99999999974 345555544443 3333221 11223333322111 122222221 12355789999
Q ss_pred eCCchhHHHHHHHHHhCCCC---eEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC------
Q 014801 286 VKSVSRAAELNKLLVECNFP---SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------ 356 (418)
Q Consensus 286 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~------ 356 (418)
+++.++++.+++.|.+.+.+ +..+||+++..+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999987665 5678999999999999875 578899999999999999999999999862
Q ss_pred ------------CCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 357 ------------PDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 357 ------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
+.|..++.||.||+||. ++|.|+.+++..
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 23668999999999998 799999999843
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=243.08 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=248.2
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
.+|.|+|..++.-+-++.+++|.|.|++|||.++..++...+...+ ++|+-.|-++|-+|-++++..-++ .|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~-----DV 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK-----DV 199 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc-----cc
Confidence 3789999999999999999999999999999999999988887766 899999999999999998876542 45
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
+..+|+.+... .+..+|+|.+.|.+++.++..-...+.+||+||+|.+-+ ...+-.++.-+-.++++.+.+
T Consensus 200 GLMTGDVTInP--------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD-kERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 200 GLMTGDVTINP--------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD-KERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred ceeecceeeCC--------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc-cccceeeeeeEEeccccceEE
Confidence 66778766553 358999999999999998888889999999999998876 444555666666788899999
Q ss_pred EEEecCCccHH--HHHHHhcCCCeEEEEcCCcccccccceEEEEEe----------chh---------------------
Q 014801 218 MFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL----------SEL--------------------- 264 (418)
Q Consensus 218 ~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------------------- 264 (418)
++|||+|+... .|+...-..|..+......... .++|+.. .+.
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTP----LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTP----LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCc----ceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 99999998633 3455555566655433221111 1222111 100
Q ss_pred ----------------------hHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCC------------------
Q 014801 265 ----------------------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF------------------ 304 (418)
Q Consensus 265 ----------------------~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~------------------ 304 (418)
.....+..++-.....++|||+-++++|+.++-.+.+...
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 0011222222233446899999999999999988776322
Q ss_pred ---------------------CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC-------
Q 014801 305 ---------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------- 356 (418)
Q Consensus 305 ---------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~------- 356 (418)
.+.++|+++-+--+..+.-.|+.|-+++|+||.+.+.|+|.|.-++|+.--.
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKF 506 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcce
Confidence 3667899999999999999999999999999999999999997666663211
Q ss_pred -CCChhhhhhhcccccCCCCc--eeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCC
Q 014801 357 -PDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 415 (418)
Q Consensus 357 -~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (418)
.-|--+|+||.|||||.|.. |.|+++++..-+....+.+ ++..--.+.+.+.-+|+
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m---~kG~aD~LnSaFhLtYn 565 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDM---LKGSADPLNSAFHLTYN 565 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHH---hcCCCcchhhhhhhHHH
Confidence 12667899999999998855 8888998877666554443 34444555555554443
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=6.6e-29 Score=252.12 Aligned_cols=318 Identities=18% Similarity=0.191 Sum_probs=198.7
Q ss_pred CCCcHHHHHhHHhhhc-----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 58 EHPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~-----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
..+|++|.+|+..+.. .++++++++||||||++++..+...+... ...++||++|+.+|+.|+.+.|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~-~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK-RFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC-ccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 3689999999988763 35799999999999988655444433333 23489999999999999999998763211
Q ss_pred CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-----CCCCCCccEEEEechhhhccC--------C--
Q 014801 133 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLES--------L-- 197 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-----~~~~~~~~~iViDE~h~~~~~--------~-- 197 (418)
...+..+.+. .............|+|+|+++|.+.+... ...+..+++||+||||+.... .
T Consensus 491 -~~~~~~i~~i---~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 491 -DQTFASIYDI---KGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred -ccchhhhhch---hhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 1111111111 11111112334699999999998764321 135678999999999985310 0
Q ss_pred ----CCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHH--------------HhcCC---CeEEEEcCC-cccc-----
Q 014801 198 ----DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK--------------KFMQD---PMEIYVDDE-AKLT----- 250 (418)
Q Consensus 198 ----~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~--------------~~~~~---~~~~~~~~~-~~~~----- 250 (418)
.+...+..++.++. ...|++||||......++. .++.+ |..+..... ....
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e 644 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGE 644 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccc
Confidence 11245566666553 4589999999754332221 11110 111111000 0000
Q ss_pred ----cccceEEE--EEech--------hh-------HH----HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC---
Q 014801 251 ----LHGLVQHY--IKLSE--------LE-------KN----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--- 302 (418)
Q Consensus 251 ----~~~~~~~~--~~~~~--------~~-------~~----~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~--- 302 (418)
.......+ ...+. .. .. ..+...+....++++||||.+.++|+.+.+.|.+.
T Consensus 645 ~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~ 724 (1123)
T PRK11448 645 EVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKK 724 (1123)
T ss_pred hhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 00000000 00000 00 00 01112222223479999999999999998887653
Q ss_pred ---CC---CeEEecCCCCHHHHHHHHHhhhcCCc-cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCC
Q 014801 303 ---NF---PSICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 375 (418)
Q Consensus 303 ---~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 375 (418)
++ .+..++|+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+.+||++.++.|...|.||+||+.|...
T Consensus 725 ~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 725 KYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred hcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 12 3456777765 46778999999887 689999999999999999999999999999999999999999643
Q ss_pred --ceeEEEEec
Q 014801 376 --KGLAITFVS 384 (418)
Q Consensus 376 --~g~~~~~~~ 384 (418)
....+.+++
T Consensus 803 ~~~K~~f~I~D 813 (1123)
T PRK11448 803 EIGKTHFRIFD 813 (1123)
T ss_pred cCCCceEEEEe
Confidence 234444555
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.1e-28 Score=236.93 Aligned_cols=317 Identities=20% Similarity=0.244 Sum_probs=224.7
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-. .+.-.+.-+..++||+|||+++.++++..+..+. .+++++|++.|+.|.++++..+...+ ++++.
T Consensus 82 ~~ydvQliG--g~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~ 155 (896)
T PRK13104 82 RHFDVQLIG--GMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVG 155 (896)
T ss_pred CcchHHHhh--hhhhccCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhccc-CceEE
Confidence 455555544 4344455689999999999999999997765443 68999999999999999999999887 89999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC-CCCC-----CCccEEEEechhhhccC------------CC-
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLES------------LD- 198 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~-~~~~-----~~~~~iViDE~h~~~~~------------~~- 198 (418)
.+.|+.+...+...+. ++|+++||..| ..+++.. ...+ ..+.++|+||+|.+.=+ ..
T Consensus 156 ~i~gg~~~~~r~~~y~---~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~ 232 (896)
T PRK13104 156 VIYPDMSHKEKQEAYK---ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDS 232 (896)
T ss_pred EEeCCCCHHHHHHHhC---CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccc
Confidence 9999988776655542 59999999999 7777765 2333 57899999999987511 00
Q ss_pred --CHHHHHHHHhhCC--------------CCc------------------------------------------------
Q 014801 199 --MRRDVQEIFKMTP--------------HDK------------------------------------------------ 214 (418)
Q Consensus 199 --~~~~~~~~~~~~~--------------~~~------------------------------------------------ 214 (418)
.......+...+. ...
T Consensus 233 ~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~ 312 (896)
T PRK13104 233 SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAH 312 (896)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHH
Confidence 0000000001000 001
Q ss_pred --------------------------------------------------------------------cEEEEEecCCcc
Q 014801 215 --------------------------------------------------------------------QVMMFSATLSKE 226 (418)
Q Consensus 215 --------------------------------------------------------------------~~i~lSAT~~~~ 226 (418)
++.+||+|...+
T Consensus 313 ~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te 392 (896)
T PRK13104 313 AMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTE 392 (896)
T ss_pred HHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhH
Confidence 333344443332
Q ss_pred HHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCC
Q 014801 227 IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNF 304 (418)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~ 304 (418)
...+..-+..+ +...+........-.+..+..+...+...+.+-+.. ..+.++||||++++.++.+++.|.+.|+
T Consensus 393 ~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 393 AYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred HHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 22211111111 112222222222223334444555565555444432 3678999999999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC------------------------------------
Q 014801 305 PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------------ 348 (418)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~------------------------------------ 348 (418)
++..+|+.+...++..+.++|++|. |+|||+++++|+|+.--
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999995 99999999999998621
Q ss_pred --CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 349 --NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 349 --~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
=+||-...+.|..--.|..||+||.|.+|.+..|++-+|+.
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 16777778889999999999999999999999999966655
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.4e-28 Score=236.25 Aligned_cols=317 Identities=20% Similarity=0.209 Sum_probs=233.8
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|++.|.-..-.+.+| -+..+.||+|||+++.++++-....+. .+-+++|+..|+.|.++++..+...+ ++++.
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~ 154 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFL-GLSVG 154 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhc-CCeEE
Confidence 6777777665555444 589999999999999999964333333 47799999999999999999999888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcCC------CCCCCccEEEEechhhhccC---------------
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES--------------- 196 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~------~~~~~~~~iViDE~h~~~~~--------------- 196 (418)
.+.|+.+...+...+. ++|+++|+..| ..+++... .....+.+.|+||+|.+.=+
T Consensus 155 ~i~~~~~~~er~~~y~---~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~ 231 (830)
T PRK12904 155 VILSGMSPEERREAYA---ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDS 231 (830)
T ss_pred EEcCCCCHHHHHHhcC---CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcc
Confidence 9999988887777654 59999999999 77777553 23677899999999987511
Q ss_pred CCCHHHHHHHHhhCC-----------------------------------------------------------------
Q 014801 197 LDMRRDVQEIFKMTP----------------------------------------------------------------- 211 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 211 (418)
......+..+...+.
T Consensus 232 ~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 311 (830)
T PRK12904 232 SELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKD 311 (830)
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 000001111111110
Q ss_pred ----------------------------------------------------CCccEEEEEecCCccHHHHHHHhcCCCe
Q 014801 212 ----------------------------------------------------HDKQVMMFSATLSKEIRPVCKKFMQDPM 239 (418)
Q Consensus 212 ----------------------------------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (418)
...++.+||+|...+...+..-+..+
T Consensus 312 g~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~-- 389 (830)
T PRK12904 312 GEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD-- 389 (830)
T ss_pred CEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC--
Confidence 00156677777765433332222222
Q ss_pred EEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHH
Q 014801 240 EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 317 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 317 (418)
.+.+ +........-.+..+......+...+...+.. ..+.++||||++++.++.+++.|.+.++++..+|+. +.+
T Consensus 390 vv~I-Ptnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~e 466 (830)
T PRK12904 390 VVVI-PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHE 466 (830)
T ss_pred EEEc-CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHH
Confidence 1122 22222322222334455666677777777755 567899999999999999999999999999999995 678
Q ss_pred HHHHHHhhhcCCccEEEEecccccCCCCCCC--------------------------------------CEEEEecCCCC
Q 014801 318 RLTRYKGFKEGNKRILVATDLVGRGIDIERV--------------------------------------NIVINYDMPDS 359 (418)
Q Consensus 318 r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~--------------------------------------~~vi~~~~~~s 359 (418)
|...+..|..+..+|+|||+++++|+|++-- =+||....+.|
T Consensus 467 REa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhes 546 (830)
T PRK12904 467 REAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHES 546 (830)
T ss_pred HHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCch
Confidence 8888999999999999999999999998743 16788888899
Q ss_pred hhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 360 ADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 360 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
..--.|..||+||+|.+|.+..|++-+|+.
T Consensus 547 rRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 547 RRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred HHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 999999999999999999999999966655
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.6e-27 Score=200.60 Aligned_cols=298 Identities=17% Similarity=0.229 Sum_probs=206.7
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
+|++.|+.+-+.+.+ .++.+|+|-||+|||-...-.+...+..+. ++.+..|+...+.+++.+++... .+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF---~~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAF---SN 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhh---cc
Confidence 789999988777664 688999999999999765555555555444 89999999999999998888754 36
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHH-HhhCCCC
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI-FKMTPHD 213 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~-~~~~~~~ 213 (418)
..+..++|+.....+ ..++|+|..++++.- +.++++||||+|.+.- .....+... .......
T Consensus 171 ~~I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~--~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 171 CDIDLLYGDSDSYFR--------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPF--SDDQSLQYAVKKARKKE 233 (441)
T ss_pred CCeeeEecCCchhcc--------ccEEEEehHHHHHHH-------hhccEEEEeccccccc--cCCHHHHHHHHHhhccc
Confidence 778888886443221 389999988888643 3577899999998754 222333333 3333445
Q ss_pred ccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH-------HHHHHHHhhc--CCCeEEE
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-------RKLNDLLDAL--DFNQVVI 284 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~--~~~~~li 284 (418)
...|++|||++......+..- +...+.+.... .......+.++......+. ..+...++.. .+.+++|
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~Rf-H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARF-HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhh-cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 568999999997655443321 11111111111 0111223344444433222 2455555554 4579999
Q ss_pred EeCCchhHHHHHHHHHhC-C-CCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCC--CCh
Q 014801 285 FVKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--DSA 360 (418)
Q Consensus 285 f~~~~~~~~~~~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~--~s~ 360 (418)
|+++.+..++++..|++. + .....+|+. ...|.+..+.|++|++++||+|.+|++|+.+|++++.+.-.-. .+.
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 999999999999999543 3 344667764 4578888999999999999999999999999999998865433 688
Q ss_pred hhhhhhcccccCCC-Cc-eeEEEEec
Q 014801 361 DTYLHRVGRAGRFG-TK-GLAITFVS 384 (418)
Q Consensus 361 ~~~~Q~~GR~~R~~-~~-g~~~~~~~ 384 (418)
..++|+.||+||.- .+ |.+..|=.
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEec
Confidence 99999999999952 33 55544433
No 96
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.2e-28 Score=247.33 Aligned_cols=299 Identities=19% Similarity=0.254 Sum_probs=201.7
Q ss_pred HHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcC-
Q 014801 65 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG- 143 (418)
Q Consensus 65 ~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~- 143 (418)
.+.+..+..++.++|+|+||||||...-..++. ...+..+ ++++.-|++--+..++..+.... +.+++...|.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~~~~-~I~~tQPRRlAA~svA~RvA~el----g~~lG~~VGY~ 146 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRGSHG-LIGHTQPRRLAARTVAQRIAEEL----GTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCCCCc-eEecCCccHHHHHHHHHHHHHHh----CCCcceEEeeE
Confidence 456666666788999999999999854333332 2222222 56777799988888877776554 3333333331
Q ss_pred cchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh-hccCCCCHHH-HHHHHhhCCCCccEEEEEe
Q 014801 144 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~~~-~~~~~~~~~~~~~~i~lSA 221 (418)
...+.. .+....|.++|++.|...+.... .+.++++|||||+|. ..+ .++... +..+... .++.++|+|||
T Consensus 147 vR~~~~----~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~-~D~LL~lLk~il~~-rpdLKlIlmSA 219 (1283)
T TIGR01967 147 VRFHDQ----VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLN-IDFLLGYLKQLLPR-RPDLKIIITSA 219 (1283)
T ss_pred EcCCcc----cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhcc-chhHHHHHHHHHhh-CCCCeEEEEeC
Confidence 111111 12235899999999998876644 588999999999995 444 455544 4444333 35688999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech------hhHHHHHHHHHh---hcCCCeEEEEeCCchhH
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE------LEKNRKLNDLLD---ALDFNQVVIFVKSVSRA 292 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~---~~~~~~~lif~~~~~~~ 292 (418)
|+.. ..+.+.+...+. +.+..... .+...|..... ......+...+. ....+.+|||+++.+++
T Consensus 220 Tld~--~~fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 220 TIDP--ERFSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CcCH--HHHHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 9974 445555544443 33322111 11222222211 112222222222 12458999999999999
Q ss_pred HHHHHHHHhCCC---CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCC------------
Q 014801 293 AELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------------ 357 (418)
Q Consensus 293 ~~~~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~------------ 357 (418)
+.+++.|.+.+. .+..+||+++.++|..++..+ +..+|+|||+++++|+|+|++++||+++.+
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 999999987644 477899999999999986543 346899999999999999999999998743
Q ss_pred ------CChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 358 ------DSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 358 ------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
-|..++.||.||+||.+ +|.|+.+++..
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 36789999999999997 99999999843
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.3e-28 Score=232.40 Aligned_cols=317 Identities=18% Similarity=0.189 Sum_probs=232.1
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|++.|.-..-.+.+|+ +..+.||+|||+++.++++..+..+. .+-+++|+.-|+.|-++++..+...+ |+++.
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg 153 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWL-GLTVG 153 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEE
Confidence 67888877665554444 99999999999999988888877665 78999999999999999999999888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHhcC------CCCCCCccEEEEechhhhccC------------CCC
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLES------------LDM 199 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~~~------~~~~~~~~~iViDE~h~~~~~------------~~~ 199 (418)
.+.++.+...+...+. +||+++|...|. ..++.+ ......+.+.||||++.+.=+ ...
T Consensus 154 ~i~~~~~~~~r~~~y~---~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 154 LNLNSMSPDEKRAAYN---CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred EeCCCCCHHHHHHHhc---CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 9998877776655554 499999998774 233321 112356788999999977511 000
Q ss_pred ---HHHHHHHHhh----------------------------------------C--------------------------
Q 014801 200 ---RRDVQEIFKM----------------------------------------T-------------------------- 210 (418)
Q Consensus 200 ---~~~~~~~~~~----------------------------------------~-------------------------- 210 (418)
...+..+... +
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 0000000000 0
Q ss_pred -C-------------------------------------------------------------CCccEEEEEecCCccHH
Q 014801 211 -P-------------------------------------------------------------HDKQVMMFSATLSKEIR 228 (418)
Q Consensus 211 -~-------------------------------------------------------------~~~~~i~lSAT~~~~~~ 228 (418)
. ...++.+||+|...+..
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0 00056777777765433
Q ss_pred HHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCe
Q 014801 229 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPS 306 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~ 306 (418)
.+ ....+-. .+.+ +........-.+..+..+...+...+...+... .+.++||||++++.++.++..|.+.++++
T Consensus 391 Ef-~~iY~l~-vv~I-Ptnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~ 467 (796)
T PRK12906 391 EF-REIYNME-VITI-PTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPH 467 (796)
T ss_pred HH-HHHhCCC-EEEc-CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCe
Confidence 33 2222222 2222 333333333333344455566776776666443 77899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC---CCC-----EEEEecCCCChhhhhhhcccccCCCCcee
Q 014801 307 ICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGL 378 (418)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~ 378 (418)
..+|+.+...++..+..+++.|. |+|||+++++|.|++ ++. +||.+..|.|...+.|+.||+||.|.+|.
T Consensus 468 ~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~ 545 (796)
T PRK12906 468 AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGS 545 (796)
T ss_pred eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcc
Confidence 99999999888888888888777 999999999999995 778 99999999999999999999999999999
Q ss_pred EEEEecCCCcH
Q 014801 379 AITFVSSASDS 389 (418)
Q Consensus 379 ~~~~~~~~~~~ 389 (418)
+..|++.+|+.
T Consensus 546 s~~~~sleD~l 556 (796)
T PRK12906 546 SRFYLSLEDDL 556 (796)
T ss_pred eEEEEeccchH
Confidence 99999966554
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.5e-27 Score=237.87 Aligned_cols=332 Identities=18% Similarity=0.209 Sum_probs=215.9
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
+|++||.++++.+.. +.++|++..+|.|||+.++..+............+|||||. ++..||.+++.+++ |.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---PV 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---CC
Confidence 689999999998763 67899999999999987544333222212222268999994 77899999999886 46
Q ss_pred ceEEEEEcCcchHHH--HHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC
Q 014801 135 IKVAVFYGGVNIKIH--KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 212 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~ 212 (418)
+++..++|+...... ...+..+..+|+|+|++.+...... +.-..+++||+||+|.+.+..+ ........+.
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~S---klskalr~L~- 318 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNENS---LLSKTMRLFS- 318 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHHH---HHHHHHHHhh-
Confidence 778788876432211 1122334579999999998763221 2223578899999999876322 2233333332
Q ss_pred CccEEEEEecCCcc-HHH---HH--------------HHhcCCC------------------eEEEEc-CCcccccccce
Q 014801 213 DKQVMMFSATLSKE-IRP---VC--------------KKFMQDP------------------MEIYVD-DEAKLTLHGLV 255 (418)
Q Consensus 213 ~~~~i~lSAT~~~~-~~~---~~--------------~~~~~~~------------------~~~~~~-~~~~~~~~~~~ 255 (418)
....+++||||-.+ ... ++ ..++... ..+... ......+....
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 33468999998321 110 00 0000000 000000 00000000000
Q ss_pred EEEEEe---------------------------------------------------------------chhhHHHHHHH
Q 014801 256 QHYIKL---------------------------------------------------------------SELEKNRKLND 272 (418)
Q Consensus 256 ~~~~~~---------------------------------------------------------------~~~~~~~~l~~ 272 (418)
...+.+ ..+.++..+..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 011111 11223344444
Q ss_pred HHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC---CccEEEEecccccCCCCCC
Q 014801 273 LLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG---NKRILVATDLVGRGIDIER 347 (418)
Q Consensus 273 ~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~t~~l~~G~d~~~ 347 (418)
++... .+.++|||+.....+..+..+|...++.+..++|+++..+|..+++.|++. ...+|++|.+.+.|+|+..
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 44433 457999999999999999999999999999999999999999999999753 2356789999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCCCceeEEE--Eec-CCCcHHHHHHHHHHhc
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT--FVS-SASDSDILNQVQARFE 400 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~--~~~-~~~~~~~~~~~~~~~~ 400 (418)
+++||+|+++||+....|++||+.|.||...|.+ ++. ..-+..++....+.+.
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998866543 333 2234444544444333
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=229.53 Aligned_cols=355 Identities=19% Similarity=0.247 Sum_probs=243.0
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHhH--HhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 39 FRDFLLKPELLRAIVDSGFEHPSEVQHECI--PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 39 ~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~--~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
|...+++..........|...++.||.+++ +.++.+++.+..+||+.|||+++.+.+++......+ .++++.|..+
T Consensus 203 ~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vs 280 (1008)
T KOG0950|consen 203 FAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVS 280 (1008)
T ss_pred hhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceee
Confidence 333445555556666778889999999998 557789999999999999999999988887765443 6899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc--CCCCCCCccEEEEechhhhc
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~~~ 194 (418)
.+.+-...+..+.... |+++....|........+ .-.+.|+|.|+-..+.+. +.-.++.+++|||||.|.+.
T Consensus 281 iv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~k-----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRRK-----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred hhHHHHhhhhhhcccc-CCcchhhcccCCCCCccc-----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 9988888888887777 888888776655433222 248999999988765443 11235678999999999988
Q ss_pred cCCCCHHHHHHHHh-----hCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccc---eEEEEEechhhH
Q 014801 195 ESLDMRRDVQEIFK-----MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL---VQHYIKLSELEK 266 (418)
Q Consensus 195 ~~~~~~~~~~~~~~-----~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 266 (418)
+ .+....++.++. ......|+|+||||+++. ..+..|+.... +.....+..+... ....+.. .+
T Consensus 355 d-~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~--y~t~fRPv~L~E~ik~G~~i~~~---~r 426 (1008)
T KOG0950|consen 355 D-KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFV--YTTRFRPVPLKEYIKPGSLIYES---SR 426 (1008)
T ss_pred c-cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhh--eecccCcccchhccCCCcccccc---hh
Confidence 7 455555554442 223336799999999864 23333332211 1111111011000 0001111 12
Q ss_pred HHHHHHHHh-------------------h--cCCCeEEEEeCCchhHHHHHHHHHh------------------------
Q 014801 267 NRKLNDLLD-------------------A--LDFNQVVIFVKSVSRAAELNKLLVE------------------------ 301 (418)
Q Consensus 267 ~~~l~~~~~-------------------~--~~~~~~lif~~~~~~~~~~~~~L~~------------------------ 301 (418)
...+..+.. + .++.++||||+++..|+.++..+..
T Consensus 427 ~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 427 NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 222222221 0 1335699999999999988755432
Q ss_pred --------------CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec----CCCChhhh
Q 014801 302 --------------CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD----MPDSADTY 363 (418)
Q Consensus 302 --------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~----~~~s~~~~ 363 (418)
..+.+..+|++++.++|+.+...|++|.+.|++||+++..|+|+|..++++... ...+..+|
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Y 586 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEY 586 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhH
Confidence 123467789999999999999999999999999999999999999888887543 23478899
Q ss_pred hhhcccccCCCCc--eeEEEEecCCCcHHHHHHHHHHhccCccccCcccccC
Q 014801 364 LHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 413 (418)
Q Consensus 364 ~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (418)
.||+|||||.|-. |.+++++...+..... +.+...++.+..-+.++
T Consensus 587 kQM~GRAGR~gidT~GdsiLI~k~~e~~~~~----~lv~~~~~~~~S~l~~e 634 (1008)
T KOG0950|consen 587 KQMVGRAGRTGIDTLGDSILIIKSSEKKRVR----ELVNSPLKPLNSCLSNE 634 (1008)
T ss_pred HhhhhhhhhcccccCcceEEEeeccchhHHH----HHHhccccccccccccc
Confidence 9999999998754 8899998865554433 44455555555544433
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.1e-26 Score=224.52 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=128.9
Q ss_pred ccCCCCCHHHHHHHH-----HCCCCCC---cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEE
Q 014801 39 FRDFLLKPELLRAIV-----DSGFEHP---SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 110 (418)
Q Consensus 39 ~~~~~l~~~~~~~l~-----~~~~~~l---~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~li 110 (418)
-+.|++..++.+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|+++++..+..+. .+++
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~I 140 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHL 140 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEE
Confidence 356788898888887 4678877 9999999999999999999999999999999999997775433 4889
Q ss_pred ecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcCCCCCC-------Cc
Q 014801 111 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDLSLK-------NV 182 (418)
Q Consensus 111 i~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~-------~~ 182 (418)
++|+++|+.|.++++..+.... ++++..+.||.+...+...+. ++|+|+||..| ..+++.+...++ .+
T Consensus 141 VTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y~---~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIYQ---CDVVYGTASEFGFDYLRDNSIATRKEEQVGRGF 216 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHcC---CCEEEECCChhHHHHhhCCCCCcCHHHhhcccc
Confidence 9999999999999999998877 899999999999887766552 69999999999 888887755554 56
Q ss_pred cEEEEechhhhc
Q 014801 183 RHFILDECDKML 194 (418)
Q Consensus 183 ~~iViDE~h~~~ 194 (418)
.++|+|||+.+.
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999886
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=217.32 Aligned_cols=317 Identities=18% Similarity=0.231 Sum_probs=226.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-. .+.-.+.-+..++||.|||+++.++++..+..+. .+.|++|+..|+.+-++++..+...+ |+++.
T Consensus 82 ~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~ 155 (908)
T PRK13107 82 RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFL-GLTVG 155 (908)
T ss_pred CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEE
Confidence 456666543 3333456689999999999999999987776554 59999999999999999999999888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC-CCC-----CCCccEEEEechhhhccCCC-------------
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLS-----LKNVRHFILDECDKMLESLD------------- 198 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~-~~~-----~~~~~~iViDE~h~~~~~~~------------- 198 (418)
.+.++.+.......+ .++|+++|+..| ..+++.+ ... ...+.+.||||++.+.-+..
T Consensus 156 ~i~~~~~~~~r~~~Y---~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~ 232 (908)
T PRK13107 156 INVAGLGQQEKKAAY---NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDS 232 (908)
T ss_pred EecCCCCHHHHHhcC---CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccc
Confidence 999987765443333 259999999999 7777765 222 26788999999998762100
Q ss_pred --CHH----HHHHHH------------------------------------hhC---C----------------------
Q 014801 199 --MRR----DVQEIF------------------------------------KMT---P---------------------- 211 (418)
Q Consensus 199 --~~~----~~~~~~------------------------------------~~~---~---------------------- 211 (418)
... .+..+. ..+ .
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~ 312 (908)
T PRK13107 233 SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNA 312 (908)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHH
Confidence 000 000000 000 0
Q ss_pred ---------CC-------------------------------------------------------------ccEEEEEe
Q 014801 212 ---------HD-------------------------------------------------------------KQVMMFSA 221 (418)
Q Consensus 212 ---------~~-------------------------------------------------------------~~~i~lSA 221 (418)
++ .++.+||+
T Consensus 313 aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTG 392 (908)
T PRK13107 313 ALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTG 392 (908)
T ss_pred HHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccC
Confidence 00 05666777
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHH
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLL 299 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L 299 (418)
|...+...+..-+..+ .+.+....+........ .+.....++...+.+-+.. ..+.++||||.+.+.++.++..|
T Consensus 393 Ta~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 393 TADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred CChHHHHHHHHHhCCC--EEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 7665433333322222 22222222222223332 3334445555444443332 26789999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC-------------------------------
Q 014801 300 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------- 348 (418)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~------------------------------- 348 (418)
.+.++++..+|+.+...++..+.++|++|. |+|||+++++|.|+.=-
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999998 99999999999998621
Q ss_pred ------CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 349 ------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 349 ------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
=+||-...+.|..--.|..||+||.|.+|.+..|++-+|+.
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 26788888889999999999999999999999999966664
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.1e-26 Score=188.26 Aligned_cols=165 Identities=24% Similarity=0.445 Sum_probs=137.5
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 140 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 140 (418)
+|+|.++++.+.+++++++.+|||+|||++++++++..+.+. ...++++++|+++|++|..+.+.++.... ++++..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccc-ccccccc
Confidence 689999999999999999999999999999999999888776 43489999999999999999999988763 7889999
Q ss_pred EcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC--CCccEEE
Q 014801 141 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP--HDKQVMM 218 (418)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 218 (418)
+++............+..+|+|+||++|...+.....++.++++||+||+|.+... .+...+..+..... ...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCCCcEEE
Confidence 99887663443333445799999999999999886667778999999999999883 66777777776653 2588999
Q ss_pred EEecCCccHH
Q 014801 219 FSATLSKEIR 228 (418)
Q Consensus 219 lSAT~~~~~~ 228 (418)
+|||++..++
T Consensus 158 ~SAT~~~~~~ 167 (169)
T PF00270_consen 158 LSATLPSNVE 167 (169)
T ss_dssp EESSSTHHHH
T ss_pred EeeCCChhHh
Confidence 9999995544
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=5.5e-25 Score=218.09 Aligned_cols=323 Identities=18% Similarity=0.227 Sum_probs=209.3
Q ss_pred CCcHHHHHhHHhhhcC---C-cEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAILG---M-DVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~---~-~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
..++.|..++...... . .+++.||||.|||.+.+.++...+.. .....+++++.|+++++++.++.++......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 3489999999888763 3 68899999999999998888877766 3445589999999999999999999876543
Q ss_pred CceEEEEEcCcchHHHHHH-------------hhcCCCcEEEeccHHHHHH-HhcCCCC-C--CCccEEEEechhhhccC
Q 014801 134 DIKVAVFYGGVNIKIHKDL-------------LKNECPQIVVGTPGRILAL-ARDKDLS-L--KNVRHFILDECDKMLES 196 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~v~T~~~l~~~-~~~~~~~-~--~~~~~iViDE~h~~~~~ 196 (418)
+......++.......... .......+.++|+...... ....... + -..+++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 2222212332221111100 0001112334444333331 1111111 0 12467999999998763
Q ss_pred CCCHHHHHHHHh-hCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH---HHHHH
Q 014801 197 LDMRRDVQEIFK-MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN---RKLND 272 (418)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 272 (418)
. ....+..... ....+..+++||||+|+.....+.................................... .....
T Consensus 354 ~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 354 T-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred c-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 2 3333333332 23345779999999999988888887766555444322111111111111000010111 11222
Q ss_pred HHh-hcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh----cCCccEEEEecccccCCCCCC
Q 014801 273 LLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 273 ~~~-~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~t~~l~~G~d~~~ 347 (418)
... ...+++++|.||++..|.++.+.|+..+..+..+||.+...+|.+.++.+. .++..|+|+|++++.|+|+.
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 222 225689999999999999999999988778999999999999999887544 56778999999999999985
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCC--CceeEEEEecCC
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFG--TKGLAITFVSSA 386 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 386 (418)
.+.+|.=- ...++++||+||+.|.| ..|.++++....
T Consensus 512 fd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 77777644 44788999999999998 567776666643
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.93 E-value=6e-24 Score=208.58 Aligned_cols=298 Identities=16% Similarity=0.177 Sum_probs=179.9
Q ss_pred CcHHHHHhHHhhhc----------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 60 PSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 60 l~~~Q~~~~~~~~~----------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
++++|.+|+..+.. .+..+++++||||||++++..+...+ .....+++|+++|+.+|..|+.+.|..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 78999999988643 24699999999999988766554444 33344589999999999999999998874
Q ss_pred ccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC--CCCCCCc-cEEEEechhhhccCCCCHHHHHHH
Q 014801 130 TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNV-RHFILDECDKMLESLDMRRDVQEI 206 (418)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~-~~iViDE~h~~~~~~~~~~~~~~~ 206 (418)
... . .+..+.......+......|+|+|.++|...+... ....... .+||+||||+... ..+...
T Consensus 318 ~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-----~~~~~~ 385 (667)
T TIGR00348 318 KDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-----GELAKN 385 (667)
T ss_pred CCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-----hHHHHH
Confidence 211 1 11112233334444444689999999998643321 1111122 2799999997543 223333
Q ss_pred H-hhCCCCccEEEEEecCCccHH-HHHHHh---cCCCeEEEEcCCcccccccceEE-EEE------e-------------
Q 014801 207 F-KMTPHDKQVMMFSATLSKEIR-PVCKKF---MQDPMEIYVDDEAKLTLHGLVQH-YIK------L------------- 261 (418)
Q Consensus 207 ~-~~~~~~~~~i~lSAT~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~------~------------- 261 (418)
+ ..++ +...+++||||..... .-...+ .+.+...+...+. ..-..+.+. |.. .
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~A-I~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDA-IRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHH-hhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 3 3343 4569999999953211 101111 1122111100000 000000000 000 0
Q ss_pred -------chh-------------------hHH-HHHHHHHhh----c--CCCeEEEEeCCchhHHHHHHHHHhC-----C
Q 014801 262 -------SEL-------------------EKN-RKLNDLLDA----L--DFNQVVIFVKSVSRAAELNKLLVEC-----N 303 (418)
Q Consensus 262 -------~~~-------------------~~~-~~l~~~~~~----~--~~~~~lif~~~~~~~~~~~~~L~~~-----~ 303 (418)
... ... .....++.. . .+.+++|||.++.+|..+.+.|.+. +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 000 000 001111111 1 2489999999999999999888664 2
Q ss_pred CCeEEecCCCCHH---------------------HHHHHHHhhhc-CCccEEEEecccccCCCCCCCCEEEEecCCCChh
Q 014801 304 FPSICIHSGMSQE---------------------ERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSAD 361 (418)
Q Consensus 304 ~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~ 361 (418)
..+..+++..+.. ....+++.|.+ +.+++||+++++.+|+|.|.+++++...+..+.
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h- 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH- 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-
Confidence 3344554433221 22367788865 688999999999999999999999998876654
Q ss_pred hhhhhcccccCC
Q 014801 362 TYLHRVGRAGRF 373 (418)
Q Consensus 362 ~~~Q~~GR~~R~ 373 (418)
.++|++||+.|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 589999999994
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=9e-25 Score=205.98 Aligned_cols=306 Identities=17% Similarity=0.193 Sum_probs=193.8
Q ss_pred CCCcHHHHHhHHhhhc----C-CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 58 EHPSEVQHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~----~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
..+|++|+.|+..+.. | +.+++++.||+|||.+++. ++..+.+.+...++|+++.+++|++|.+..+..+....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 4689999999988765 3 4599999999999998654 55555444445589999999999999998888775432
Q ss_pred CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-----CCCCCCccEEEEechhhhccCCCCHHHHHHHH
Q 014801 133 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLESLDMRRDVQEIF 207 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-----~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~ 207 (418)
-.+..+.+. .. .+.+.|.++|++.+....... .+....+++|||||||+-. ......++
T Consensus 243 --~~~n~i~~~-~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi-----~~~~~~I~ 306 (875)
T COG4096 243 --TKMNKIEDK-KG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI-----YSEWSSIL 306 (875)
T ss_pred --cceeeeecc-cC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-----HhhhHHHH
Confidence 222222221 11 113599999999998876654 2345569999999999643 34444555
Q ss_pred hhCCCCccEEEEEecCCccHHHHHHHhc-CCCeEEE--------------------EcC-Ccccccc-----------cc
Q 014801 208 KMTPHDKQVMMFSATLSKEIRPVCKKFM-QDPMEIY--------------------VDD-EAKLTLH-----------GL 254 (418)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~--------------------~~~-~~~~~~~-----------~~ 254 (418)
.++... .+++||||.......--.++ +.|...+ ... .....+. .+
T Consensus 307 dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 555432 35669998653222111222 3332222 000 0000000 00
Q ss_pred --eEEEEEec-----------hhhHHHHHHHHHhhc--C--CCeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCC
Q 014801 255 --VQHYIKLS-----------ELEKNRKLNDLLDAL--D--FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSG 312 (418)
Q Consensus 255 --~~~~~~~~-----------~~~~~~~l~~~~~~~--~--~~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~ 312 (418)
........ .......+.+.+... . .+|+||||.+..+|+.+...|... +--+..+.++
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 00000000 011122334444441 1 369999999999999999999764 2334555554
Q ss_pred CCHHHHHHHHHhhhc--CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC-------CCceeEEEEe
Q 014801 313 MSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-------GTKGLAITFV 383 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~--g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-------~~~g~~~~~~ 383 (418)
.. .-...+..|.. .-.+|.|+.+++.+|+|+|.|-.++++....|...|.||+||+-|. ++....+.++
T Consensus 465 ~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~if 542 (875)
T COG4096 465 AE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIF 542 (875)
T ss_pred ch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEE
Confidence 32 33333555544 3347889999999999999999999999999999999999999994 2234455555
Q ss_pred c
Q 014801 384 S 384 (418)
Q Consensus 384 ~ 384 (418)
+
T Consensus 543 D 543 (875)
T COG4096 543 D 543 (875)
T ss_pred E
Confidence 5
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.5e-24 Score=209.79 Aligned_cols=306 Identities=17% Similarity=0.191 Sum_probs=213.3
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 140 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 140 (418)
+....+.+..+.+++-++|+|+||+|||+..-..++..... . +.++.+.-|++--+...+..+..-.....|-.|+.-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~-~-~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG-I-AGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc-c-CCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 44556777777788899999999999998766666665542 2 227888889998788887777655433223334332
Q ss_pred EcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHH-HHHHHhhCCCCccEEEE
Q 014801 141 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMMF 219 (418)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~-~~~~~~~~~~~~~~i~l 219 (418)
.+.+........|-++|...|.+.+.... .++.+++||+||+|.-.-+.++.-. +..+....+.+.++|.|
T Consensus 130 -------iRfe~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 130 -------IRFESKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred -------EEeeccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 12222223335899999999999888765 4899999999999965443343333 34446666667999999
Q ss_pred EecCCccHHHHHHHhcCCCeEEEEcC-CcccccccceEEEEEec-hhh-HHHHHH---HHHhhcCCCeEEEEeCCchhHH
Q 014801 220 SATLSKEIRPVCKKFMQDPMEIYVDD-EAKLTLHGLVQHYIKLS-ELE-KNRKLN---DLLDALDFNQVVIFVKSVSRAA 293 (418)
Q Consensus 220 SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~l~---~~~~~~~~~~~lif~~~~~~~~ 293 (418)
|||+..+ .+..++.+.-.+.+.. ..+ +...|.... ... -...+. ........+.+|||.+..++++
T Consensus 202 SATld~~---rfs~~f~~apvi~i~GR~fP-----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 202 SATLDAE---RFSAYFGNAPVIEIEGRTYP-----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred ecccCHH---HHHHHcCCCCEEEecCCccc-----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHH
Confidence 9999753 3444444433333222 211 111221111 111 122222 2222335689999999999999
Q ss_pred HHHHHHHh--C--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC-------------
Q 014801 294 ELNKLLVE--C--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------------- 356 (418)
Q Consensus 294 ~~~~~L~~--~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~------------- 356 (418)
..++.|.+ . ...+..+||.++.+++..+++--..|..+|+++|++.++++.+|++..||.-+.
T Consensus 274 ~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~ 353 (845)
T COG1643 274 RTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLT 353 (845)
T ss_pred HHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCce
Confidence 99999987 2 356777999999999999877666676779999999999999999999996543
Q ss_pred -----CCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 357 -----PDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 357 -----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
+-|.++..||.|||||. .+|.|+-+++.
T Consensus 354 ~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse 386 (845)
T COG1643 354 RLETEPISKASADQRAGRAGRT-GPGICYRLYSE 386 (845)
T ss_pred eeeEEEechhhhhhhccccccC-CCceEEEecCH
Confidence 23788899999999997 49999999994
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=8e-25 Score=210.12 Aligned_cols=341 Identities=20% Similarity=0.234 Sum_probs=223.3
Q ss_pred CCCcHHHHHhHHhhhcC----CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 58 EHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~----~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
..+++-|..++..+... +..++.|.||||||-+|+-.+...+.+++ ++|+++|-.+|..|+...|+..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---- 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---- 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh----
Confidence 46789999999998875 56999999999999999888888887765 89999999999999999998876
Q ss_pred CceEEEEEcCcchHHHHHHh---hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC----CCCHHHHHHH
Q 014801 134 DIKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----LDMRRDVQEI 206 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~----~~~~~~~~~~ 206 (418)
+.++..++++.+..++...+ .++...|+|+|...+. ..+.++++|||||=|.-... ..+..+=..+
T Consensus 270 g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 67888888887766555544 4477899999988776 46889999999999965432 1122222222
Q ss_pred HhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech--hhH-----HHHHHHHHhhc-C
Q 014801 207 FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE--LEK-----NRKLNDLLDAL-D 278 (418)
Q Consensus 207 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~-~ 278 (418)
+.....++++|+-|||++-+....+ ..+............ .........+.... ... ...+..+-... .
T Consensus 343 ~Ra~~~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 343 LRAKKENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLER 419 (730)
T ss_pred HHHHHhCCCEEEecCCCCHHHHHhh--hcCceEEEEcccccc-ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhc
Confidence 3333356779999999986544333 222111111111111 11111111222111 011 12233332222 4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCC------------------------------------------------------
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNF------------------------------------------------------ 304 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~------------------------------------------------------ 304 (418)
+.++|+|.|.+..+-.+ .++++|+
T Consensus 420 geQ~llflnRRGys~~l--~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 420 GEQVLLFLNRRGYAPLL--LCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred CCeEEEEEccCCcccee--ecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 57888888887765444 1222222
Q ss_pred ----------CeEEecCCCC--HHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCC------------Ch
Q 014801 305 ----------PSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SA 360 (418)
Q Consensus 305 ----------~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~------------s~ 360 (418)
++..+.++.+ ...-...++.|.+|+.+|||+|+++..|.|+|+++.|...+... ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 1222222222 33456678899999999999999999999999999888766543 34
Q ss_pred hhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCCC
Q 014801 361 DTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 417 (418)
Q Consensus 361 ~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (418)
..+.|..|||||.+.+|.+++-....+...+.......+....+.--+....-.|||
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PP 634 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPP 634 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCC
Confidence 557899999999999999999988776655554444444333333333344445555
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=203.91 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=117.4
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|..||.+.+..+-++++++|+|||.+|||++...++-..+..+..+ .+|+++|+++|++|....+........-.+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 57899999999988999999999999999998877776666666655 79999999999999988887655322112223
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc---CCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCcc
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD---KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 215 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 215 (418)
.+.|..+.+.+.. .-.++|+|+-|+.+..++.. ......+++++|+||+|.+.+ ..-...++.+.... .++
T Consensus 590 sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~-~ed~l~~Eqll~li--~CP 663 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN-EEDGLLWEQLLLLI--PCP 663 (1330)
T ss_pred hhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc-cccchHHHHHHHhc--CCC
Confidence 3444433332221 11358999999999998776 455678999999999999876 34344444444433 367
Q ss_pred EEEEEecCCc
Q 014801 216 VMMFSATLSK 225 (418)
Q Consensus 216 ~i~lSAT~~~ 225 (418)
++++|||..+
T Consensus 664 ~L~LSATigN 673 (1330)
T KOG0949|consen 664 FLVLSATIGN 673 (1330)
T ss_pred eeEEecccCC
Confidence 9999999854
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=5.7e-24 Score=197.58 Aligned_cols=329 Identities=19% Similarity=0.265 Sum_probs=220.8
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHH--HhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVL--STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l--~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
.+++||.+.++.+.+ |-++|+...+|-|||+-.+. ..+.... +..+ ..||+||...| ..|..+|++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~-~~~G-PfLVi~P~StL-~NW~~Ef~rf~--- 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK-GIPG-PFLVIAPKSTL-DNWMNEFKRFT--- 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc-CCCC-CeEEEeeHhhH-HHHHHHHHHhC---
Confidence 789999999998776 66899999999999965432 2222222 2223 47999997665 55988888886
Q ss_pred CCceEEEEEcCcchH--HHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC
Q 014801 133 PDIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 210 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~ 210 (418)
|++++..++|+.... .....+..+..+|+|||+++..+--. .+.--.++++||||+|++.+.. ..+...+..+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~~---s~L~~~lr~f 315 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNEK---SKLSKILREF 315 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcchh---hHHHHHHHHh
Confidence 689999999985321 22233444678999999999976311 1222356789999999998632 3344444444
Q ss_pred CCCccEEEEEecCCcc-HH-----------------HHHHHhcCC-----------------------------------
Q 014801 211 PHDKQVMMFSATLSKE-IR-----------------PVCKKFMQD----------------------------------- 237 (418)
Q Consensus 211 ~~~~~~i~lSAT~~~~-~~-----------------~~~~~~~~~----------------------------------- 237 (418)
... ..+++|+||-.+ +. ..+..|+..
T Consensus 316 ~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred ccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 333 358889996211 00 000000000
Q ss_pred --CeEEE-------------------------------------------------EcCCcccccccceEEEEEechhhH
Q 014801 238 --PMEIY-------------------------------------------------VDDEAKLTLHGLVQHYIKLSELEK 266 (418)
Q Consensus 238 --~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 266 (418)
...++ ++...+..+..... -.+..+.+
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde--hLv~nSGK 472 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE--HLVTNSGK 472 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch--HHHhcCcc
Confidence 00000 00000000000000 01123345
Q ss_pred HHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC---ccEEEEeccccc
Q 014801 267 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDLVGR 341 (418)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~t~~l~~ 341 (418)
+..|..++..+ .++++|||.+-......+..++.-.++....+.|..+.++|...++.|.... .-.+++|.+.+.
T Consensus 473 m~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 473 MLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred eehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 66677777665 6789999999999999999999888999999999999999999999998643 446779999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEE--EEecCC-CcHHHHHHHHHHhcc
Q 014801 342 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSA-SDSDILNQVQARFEV 401 (418)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~--~~~~~~-~~~~~~~~~~~~~~~ 401 (418)
|+|+..+++||+|+..|++..-.|.+.||.|.||...|. -++..+ -+..++......+..
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~L 615 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRL 615 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhch
Confidence 999999999999999999999999999999999876554 445433 233444444444443
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.2e-22 Score=194.87 Aligned_cols=289 Identities=19% Similarity=0.250 Sum_probs=198.7
Q ss_pred HHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 50 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 50 ~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
+.+.+....+|+..|+--...+..|+++-+.||||.|||.-.++..+-.+.++ .++++|+||..|+.|.++.+++++
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHH
Confidence 33444433389999999999999999999999999999975444444334333 289999999999999999999998
Q ss_pred ccCCCceEEE-EEcCcchHH---HHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC---------
Q 014801 130 TYLPDIKVAV-FYGGVNIKI---HKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES--------- 196 (418)
Q Consensus 130 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~--------- 196 (418)
....+..+.. +++..+... ..+.+.++..||+|+|.+-+..-+..- .--+|++|++|++|.+.-.
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHH
Confidence 6653243333 566655443 345566788999999988776644431 1137899999999987632
Q ss_pred -CCCHHH-------HHHHHh------------------------hCCCCccEEEEEecCCccH--HHHHHHhcCCCeEEE
Q 014801 197 -LDMRRD-------VQEIFK------------------------MTPHDKQVMMFSATLSKEI--RPVCKKFMQDPMEIY 242 (418)
Q Consensus 197 -~~~~~~-------~~~~~~------------------------~~~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~ 242 (418)
.++... +..+.. ...+..+++..|||..+.- ..+.+.+++= .
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----e 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----E 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----c
Confidence 111110 111110 1123457999999986532 2233333321 1
Q ss_pred EcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCC---chhHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 014801 243 VDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS---VSRAAELNKLLVECNFPSICIHSGMSQEERL 319 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~ 319 (418)
+ ......+..+...+... ...+.+.++++.... ..|||++. ++.+++++++|+..|+++..+|+. ..
T Consensus 304 v-G~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 304 V-GSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred c-CccchhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 1 12223344555555544 334555566666653 67999999 999999999999999999999983 25
Q ss_pred HHHHhhhcCCccEEEEe----cccccCCCCCC-CCEEEEecCC
Q 014801 320 TRYKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMP 357 (418)
Q Consensus 320 ~~~~~f~~g~~~vlv~t----~~l~~G~d~~~-~~~vi~~~~~ 357 (418)
..++.|..|++++||+. +++.+|+|+|. ++.+|+++.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 66899999999999975 67899999997 6788887766
No 111
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=192.03 Aligned_cols=308 Identities=15% Similarity=0.152 Sum_probs=205.6
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 140 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 140 (418)
+.+-.+.+..+.+++-++|.|+||+|||.-.--.+.+. .-...+ ++.+.-|++--+..++++...-.....|-.|+..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~ea-G~~~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEA-GFASSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhc-ccccCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 34446777778888999999999999997533333333 323333 4778889998887777766543322113333332
Q ss_pred EcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 141 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
. +.+........|.+.|-+.|++..-... .++++++||+||||.-.-..+..-.+.+-.-..+...++|.||
T Consensus 131 I-------RFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 131 I-------RFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred E-------EecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 1222223345899999999998666544 5789999999999964322222222222233344567899999
Q ss_pred ecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh----HHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 014801 221 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE----KNRKLNDLLDALDFNQVVIFVKSVSRAAELN 296 (418)
Q Consensus 221 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~ 296 (418)
||+..+ .+..++.+...+.+....- .+...|...+..+ ....+..+-...+.+.+|||....++++.++
T Consensus 203 ATlda~---kfS~yF~~a~i~~i~GR~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 203 ATLDAE---KFSEYFNNAPILTIPGRTF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred eeecHH---HHHHHhcCCceEeecCCCC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 999743 4455555533333332211 1112222222211 1222233333456789999999999999999
Q ss_pred HHHHhC----CC----CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC------------
Q 014801 297 KLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------------ 356 (418)
Q Consensus 297 ~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~------------ 356 (418)
+.|.+. +. -+..+||.++.+++..+++.-..|..+|+++|++.++.+.+|++..||.-+.
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 998765 11 1356899999999999988777899999999999999999999999995442
Q ss_pred ------CCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 357 ------PDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 357 ------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
|-|..+..||.|||||.| +|.|+-++..+
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~ 390 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTES 390 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCC-CceEEEeeeHH
Confidence 348889999999999975 99999999843
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=2.1e-21 Score=196.74 Aligned_cols=350 Identities=16% Similarity=0.178 Sum_probs=214.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhHH----hhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHH
Q 014801 45 KPELLRAIVDSGFEHPSEVQHECIP----QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 120 (418)
Q Consensus 45 ~~~~~~~l~~~~~~~l~~~Q~~~~~----~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q 120 (418)
++.+.+.+...|+ ++|+.|.+.+. .+..++++++.||||+|||++|+++++..+.. +.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CCeEEEEeCcHHHHHH
Confidence 3467777777777 58999998666 44457889999999999999999999887662 2289999999999999
Q ss_pred HHH-HHHHHhccCC-CceEEEEEcCcchH-----------------H-----------------HHH-------------
Q 014801 121 ICH-EFERFSTYLP-DIKVAVFYGGVNIK-----------------I-----------------HKD------------- 151 (418)
Q Consensus 121 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~-----------------~~~------------- 151 (418)
+.. ++..+.+..+ .+++..+.|..++- . +.+
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 855 5655544331 36666666543220 0 000
Q ss_pred Hh-----------------------hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC------CCC---
Q 014801 152 LL-----------------------KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM--- 199 (418)
Q Consensus 152 ~~-----------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~------~~~--- 199 (418)
.+ ....++|+|+++..|..-+......+...+++||||||++.+. ..+
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 00 0022589999999988765444334566789999999988631 000
Q ss_pred --HH----------------------------------------------------------------HHHHHHhh----
Q 014801 200 --RR----------------------------------------------------------------DVQEIFKM---- 209 (418)
Q Consensus 200 --~~----------------------------------------------------------------~~~~~~~~---- 209 (418)
.. .+......
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00 00000000
Q ss_pred -----------------C---------------------------CCCccEEEEEecCCcc-HHHHHHHhcCCC-eE-EE
Q 014801 210 -----------------T---------------------------PHDKQVMMFSATLSKE-IRPVCKKFMQDP-ME-IY 242 (418)
Q Consensus 210 -----------------~---------------------------~~~~~~i~lSAT~~~~-~~~~~~~~~~~~-~~-~~ 242 (418)
. .....+|++|||+... ........++-. .. ..
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 0 0112688999999742 123333333321 11 11
Q ss_pred EcCCcccccccceEEEEE--e------chhhHHHH----HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCC--CCeEE
Q 014801 243 VDDEAKLTLHGLVQHYIK--L------SELEKNRK----LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN--FPSIC 308 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~--~------~~~~~~~~----l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~--~~~~~ 308 (418)
.. ............++. . +...-.+. +..++.. .+++++||+++.+..+.++..|.... ....+
T Consensus 628 ~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~ 705 (850)
T TIGR01407 628 IE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV 705 (850)
T ss_pred ec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE
Confidence 11 111111111112211 1 11111222 2223222 44799999999999999999987521 12223
Q ss_pred ecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCC--EEEEecCCCC---------------------------
Q 014801 309 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN--IVINYDMPDS--------------------------- 359 (418)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~--~vi~~~~~~s--------------------------- 359 (418)
+..+.. ..|..+++.|++++..||++|+..++|+|+|+.. .||+...|..
T Consensus 706 l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~l 784 (850)
T TIGR01407 706 LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVL 784 (850)
T ss_pred EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhH
Confidence 333333 5788899999999999999999999999999855 5677666541
Q ss_pred ---hhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHHHHHHhcc
Q 014801 360 ---ADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFEV 401 (418)
Q Consensus 360 ---~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 401 (418)
...+.|.+||+.|..++..++++++.. ....+-+.+-+.+..
T Consensus 785 P~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 785 PMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred HHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 133579999999988777777777754 344455556555543
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=6.2e-22 Score=187.28 Aligned_cols=317 Identities=20% Similarity=0.175 Sum_probs=220.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-..-.+.+| -+..+.||.|||+++.+++...+..+. .+.+++|+.-|+.+-++++..+...+ |+++.
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg 151 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEAL-GLTVG 151 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhc-CCEEE
Confidence 6788888888777765 477999999999999988887776555 78999999999999999999998888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHhcC------CCCCCCccEEEEechhhhccC--------------C
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLES--------------L 197 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~~~------~~~~~~~~~iViDE~h~~~~~--------------~ 197 (418)
.+.++.+.+.+...+. +||.++|..-|. ..++.+ ......+.+.||||++.+.=+ .
T Consensus 152 ~i~~~~~~~err~aY~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~ 228 (764)
T PRK12326 152 WITEESTPEERRAAYA---CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGE 228 (764)
T ss_pred EECCCCCHHHHHHHHc---CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcch
Confidence 9998877666555554 489999987663 222221 122456889999999977510 0
Q ss_pred CCHHHHHHHHhh---------------------------------------------------------C----------
Q 014801 198 DMRRDVQEIFKM---------------------------------------------------------T---------- 210 (418)
Q Consensus 198 ~~~~~~~~~~~~---------------------------------------------------------~---------- 210 (418)
........+... +
T Consensus 229 ~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~d 308 (764)
T PRK12326 229 APRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRD 308 (764)
T ss_pred hHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 000000000000 0
Q ss_pred ---------------------------------------------------CCCccEEEEEecCCccHHHHHHHhcCCCe
Q 014801 211 ---------------------------------------------------PHDKQVMMFSATLSKEIRPVCKKFMQDPM 239 (418)
Q Consensus 211 ---------------------------------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (418)
....++.+||+|.......+.+-+..+
T Consensus 309 geV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~-- 386 (764)
T PRK12326 309 GKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG-- 386 (764)
T ss_pred CEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc--
Confidence 001167888998876544433333322
Q ss_pred EEEEcCCcccccccceEEEEEechhhHHHHHH-HHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHH
Q 014801 240 EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN-DLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 317 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 317 (418)
.+.+....+...... +..+......+...+. ++... ..+.++||.+.+++..+.++..|.+.+++..++++.....+
T Consensus 387 Vv~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E 465 (764)
T PRK12326 387 VSVIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE 465 (764)
T ss_pred EEECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH
Confidence 223333322222333 3333444444544444 33333 26789999999999999999999999999999998755444
Q ss_pred HHHHHHhhhcCCccEEEEecccccCCCCCCC---------------CEEEEecCCCChhhhhhhcccccCCCCceeEEEE
Q 014801 318 RLTRYKGFKEGNKRILVATDLVGRGIDIERV---------------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 382 (418)
Q Consensus 318 r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~---------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 382 (418)
-..+-++=+.| .|-|||+++++|.|+.-- =+||-...+.|..--.|..||+||.|.+|.+..|
T Consensus 466 A~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 466 ARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred HHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 44343333334 488999999999998621 2788888899999999999999999999999999
Q ss_pred ecCCCcH
Q 014801 383 VSSASDS 389 (418)
Q Consensus 383 ~~~~~~~ 389 (418)
++-+|+.
T Consensus 544 lSleDdl 550 (764)
T PRK12326 544 VSLEDDV 550 (764)
T ss_pred EEcchhH
Confidence 9965554
No 114
>COG4889 Predicted helicase [General function prediction only]
Probab=99.90 E-value=7.1e-24 Score=199.22 Aligned_cols=329 Identities=16% Similarity=0.153 Sum_probs=204.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC----CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~----~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
.+|+.+.. .+++..+.-++-.+|||+|+.|+++...+ .+.-+.+.+|+|||++.+ -+...+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----hheEeec
Confidence 56777755 67778888788889999999999998873 456777889999999865 44444443 3899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchH------------------------HHHHHhhcCCCcEEEeccHHH
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK------------------------IHKDLLKNECPQIVVGTPGRI 168 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~i~v~T~~~l 168 (418)
|+.+|..|..+++..-... .++...++++.... .+...-....--|+++|++.+
T Consensus 214 PSIsLLsQTlrew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl 291 (1518)
T COG4889 214 PSISLLSQTLREWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSL 291 (1518)
T ss_pred chHHHHHHHHHHHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccch
Confidence 9999999998887654221 45555555443221 111111223346999999999
Q ss_pred HHHHhcCCCCCCCccEEEEechhhhccCCCCHHH---HHHHHhh-CCCCccEEEEEecCCccHHHHH-------------
Q 014801 169 LALARDKDLSLKNVRHFILDECDKMLESLDMRRD---VQEIFKM-TPHDKQVMMFSATLSKEIRPVC------------- 231 (418)
Q Consensus 169 ~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~---~~~~~~~-~~~~~~~i~lSAT~~~~~~~~~------------- 231 (418)
...-...+.-+..+++||+||+|+..+.+-.... +.++... .-+..+.+.|||||.-..+..-
T Consensus 292 ~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM 371 (1518)
T COG4889 292 PRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM 371 (1518)
T ss_pred HHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc
Confidence 8877777777899999999999988763211111 1111100 0122457889999843211111
Q ss_pred --------------------HHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhc--------------
Q 014801 232 --------------------KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-------------- 277 (418)
Q Consensus 232 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 277 (418)
..++.+................+..........-..+....++...
T Consensus 372 DDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~ 451 (1518)
T COG4889 372 DDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLK 451 (1518)
T ss_pred chhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 1111111111111000000001111111111111111111222111
Q ss_pred -------CCCeEEEEeCCchhHHHHHHHHHh-------------CCCCeEE--ecCCCCHHHHHHHHH---hhhcCCccE
Q 014801 278 -------DFNQVVIFVKSVSRAAELNKLLVE-------------CNFPSIC--IHSGMSQEERLTRYK---GFKEGNKRI 332 (418)
Q Consensus 278 -------~~~~~lif~~~~~~~~~~~~~L~~-------------~~~~~~~--~~~~~~~~~r~~~~~---~f~~g~~~v 332 (418)
+..++|-||.+.++...+++.+.+ .+..+.+ +.|.|+..+|...+. .|...+++|
T Consensus 452 ~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI 531 (1518)
T COG4889 452 NIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI 531 (1518)
T ss_pred CCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee
Confidence 113679999999888888766643 1333444 457888888865544 345678999
Q ss_pred EEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC
Q 014801 333 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 373 (418)
Q Consensus 333 lv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (418)
|--..+|++|+|+|.++.||++++..|....+|.+||++|.
T Consensus 532 lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 532 LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999994
No 115
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=8.4e-22 Score=184.07 Aligned_cols=312 Identities=19% Similarity=0.178 Sum_probs=208.8
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.|.+||++.+..+.. +...|+-..+|-|||.-.+ ..+..+..+ .-...+||||| ..+..||..+|.++. |
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~---p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWW---P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhC---c
Confidence 678999999988775 6679999999999995433 222222222 21236999999 588999999999886 4
Q ss_pred CceEEEEEcCcch--------HHHHHH-h---hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHH
Q 014801 134 DIKVAVFYGGVNI--------KIHKDL-L---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 201 (418)
Q Consensus 134 ~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~ 201 (418)
.+++..+++.... ...... + ......|+++|++.|.-. ...+.--.++++|+||.|.+-+.. .
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn---s 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN---S 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc---c
Confidence 6788888886552 111111 1 113358999999988542 222333457889999999997632 2
Q ss_pred HHHHHHhhCCCCccEEEEEecCCcc-HH----------------------------------------------------
Q 014801 202 DVQEIFKMTPHDKQVMMFSATLSKE-IR---------------------------------------------------- 228 (418)
Q Consensus 202 ~~~~~~~~~~~~~~~i~lSAT~~~~-~~---------------------------------------------------- 228 (418)
.+......+ ...+.|.+|+||-.+ +.
T Consensus 355 ~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 222222222 234568888886211 00
Q ss_pred HH-----HHH---------hcCCCeEE-E-----------------------EcCCc------------ccc--------
Q 014801 229 PV-----CKK---------FMQDPMEI-Y-----------------------VDDEA------------KLT-------- 250 (418)
Q Consensus 229 ~~-----~~~---------~~~~~~~~-~-----------------------~~~~~------------~~~-------- 250 (418)
.. +++ +......+ . ++... ..+
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 00 000 00000000 0 00000 000
Q ss_pred -cccceEEE-EEechhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHH-hCCCCeEEecCCCCHHHHHHHHHhh
Q 014801 251 -LHGLVQHY-IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGF 325 (418)
Q Consensus 251 -~~~~~~~~-~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f 325 (418)
.......+ -......++..+..++... .+.++++|..++.....+...|. ..++.+..+.|..+...|..+++.|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 00000111 2223345677777777665 56799999999999999999998 5799999999999999999999999
Q ss_pred hcCCc-c-EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEE
Q 014801 326 KEGNK-R-ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 381 (418)
Q Consensus 326 ~~g~~-~-vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 381 (418)
++++. . +|++|.+.+.|+|+..++-||+|++.|++..-.|..-||.|.||+..|++
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 97764 3 45688999999999999999999999999999999999999998866554
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=2.2e-20 Score=181.35 Aligned_cols=133 Identities=22% Similarity=0.373 Sum_probs=113.6
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec--
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD-- 355 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~-- 355 (418)
.+.++||||++.+.++.+++.|.+.++++..+|++++..+|..+++.|++|+++|+|||+.+++|+|+|.+++|++++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---CCCChhhhhhhcccccCCCCceeEEEEecCCCc--------HHHHHHHHHHhccCccccCcccc
Q 014801 356 ---MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD--------SDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 356 ---~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
.|.+..+|+|++||+||. ..|.++++++..+. ......++..++.+...+|..+.
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~ 586 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIR 586 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccC
Confidence 788999999999999997 68999999885432 12334455555555555555443
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=6.7e-22 Score=181.12 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=208.1
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
..+++-.+.+.++..++-++|.|.||||||.-.- -.+....-..++.++-+--|++.-+..++.+...-. +.+.+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiP-QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM----gvkLG 339 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIP-QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM----GVKLG 339 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccccc-HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh----Ccccc
Confidence 4567778888888889999999999999997532 222333333334357777799988888766654322 22221
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.-.| ++.+.+.......-|-++|-++|++-+... .++.++++|||||||.-.-..+....+..-+..+++..+++.
T Consensus 340 ~eVG---YsIRFEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 340 HEVG---YSIRFEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred cccc---eEEEeccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEe
Confidence 1111 222222223333467899999999866554 368899999999999654433443344444455667889999
Q ss_pred EEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHH-HHHHHh---hcCCCeEEEEeCCchhHHH
Q 014801 219 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK-LNDLLD---ALDFNQVVIFVKSVSRAAE 294 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---~~~~~~~lif~~~~~~~~~ 294 (418)
+|||+..+ .+...+..-|++..-.... .+.-.|-..++.+-.+. +..++. ..+.+.+|||....++.+.
T Consensus 416 sSAT~DAe--kFS~fFDdapIF~iPGRRy-----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 416 SSATMDAE--KFSAFFDDAPIFRIPGRRY-----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eccccCHH--HHHHhccCCcEEeccCccc-----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99999743 3333343344433222111 12223333333333322 222222 2366899999999999888
Q ss_pred HHHHHHh----CC-----CCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC---------
Q 014801 295 LNKLLVE----CN-----FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--------- 356 (418)
Q Consensus 295 ~~~~L~~----~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~--------- 356 (418)
..+.|.+ +| +-+..+|+.++.+.+..+++---+|..+|++||+++++.+.++++..||.-+.
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 7777654 23 23556899999999999988888899999999999999999999999995443
Q ss_pred ---------CCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 357 ---------PDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 357 ---------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|-|.++..||.|||||.| +|+|+-++..
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 347888999999999987 9999999883
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.9e-20 Score=168.20 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=124.8
Q ss_pred CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhc-CCCeEEEEeCCchh
Q 014801 213 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSR 291 (418)
Q Consensus 213 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~ 291 (418)
.+|+|++||||.+....... ++...-.+.+..-..+ ...+........+.+.++.... .+.+++|-+-+.+.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 45899999999865332211 1111111111111111 1112222333444454444432 55899999999999
Q ss_pred HHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCC-----CChhhhhhh
Q 014801 292 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP-----DSADTYLHR 366 (418)
Q Consensus 292 ~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~-----~s~~~~~Q~ 366 (418)
++.+.++|.+.|+++..+|++...-+|.+++..++.|+++|||+-+.|-+|+|+|.+..|.+++.. .|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988854 599999999
Q ss_pred cccccCCCCceeEEEEecCC
Q 014801 367 VGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 367 ~GR~~R~~~~g~~~~~~~~~ 386 (418)
+|||.|. -.|.++++.+.-
T Consensus 539 IGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 539 IGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHhhc-cCCeEEEEchhh
Confidence 9999995 689999998843
No 119
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3e-21 Score=187.05 Aligned_cols=317 Identities=18% Similarity=0.182 Sum_probs=216.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-. .+.-.+.-+..+.||+|||+++.++++..+..+. .+.+++|+.-|+.+-++++..+...+ |+++.
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~ 155 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFL-GLSVG 155 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEE
Confidence 556666544 4444566789999999999999988887766555 78999999999999999999999888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccC------------CCC
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES------------LDM 199 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~------------~~~ 199 (418)
++.++.+.+.+...+. .+|+++|..-| ...++.. ......+.+.||||+|.+.=+ ...
T Consensus 156 ~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~ 232 (913)
T PRK13103 156 IVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDS 232 (913)
T ss_pred EECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccc
Confidence 9998877776666555 59999999876 2222322 112377899999999977511 000
Q ss_pred -------HHH---H------------------------------------HHHH---h----------------------
Q 014801 200 -------RRD---V------------------------------------QEIF---K---------------------- 208 (418)
Q Consensus 200 -------~~~---~------------------------------------~~~~---~---------------------- 208 (418)
... + ..++ .
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~ 312 (913)
T PRK13103 233 SKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYA 312 (913)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHH
Confidence 000 0 0000 0
Q ss_pred ------hCC-------------------------------------------------------------CCccEEEEEe
Q 014801 209 ------MTP-------------------------------------------------------------HDKQVMMFSA 221 (418)
Q Consensus 209 ------~~~-------------------------------------------------------------~~~~~i~lSA 221 (418)
.+. ...++.+||+
T Consensus 313 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTG 392 (913)
T PRK13103 313 GLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTG 392 (913)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCC
Confidence 000 0005666777
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHh-hc-CCCeEEEEeCCchhHHHHHHHH
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-AL-DFNQVVIFVKSVSRAAELNKLL 299 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~lif~~~~~~~~~~~~~L 299 (418)
|...+...+..-+..+ .+.+ +........-.+..+.....++...+.+-+. .+ .+.++||-+.+++..+.+++.|
T Consensus 393 Ta~te~~Ef~~iY~l~--Vv~I-PTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L 469 (913)
T PRK13103 393 TADTEAFEFRQIYGLD--VVVI-PPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLL 469 (913)
T ss_pred CCHHHHHHHHHHhCCC--EEEC-CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHH
Confidence 7765443332222222 2222 2222222222233344445555555444443 33 6789999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC---------------------------------
Q 014801 300 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE--------------------------------- 346 (418)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~--------------------------------- 346 (418)
.+.+++..++++.....+...+-++=+.| .|-|||+++++|.|+.
T Consensus 470 ~~~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 547 (913)
T PRK13103 470 KKEGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQ 547 (913)
T ss_pred HHcCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Confidence 99999999999876655544443333344 4899999999999984
Q ss_pred ----CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 347 ----RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 347 ----~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
+==+||-...+.|..--.|..||+||.|.+|.+..|++-+|+.
T Consensus 548 V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 548 VIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1126888888899999999999999999999999999976555
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.6e-21 Score=189.73 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=112.3
Q ss_pred EEEechhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEE
Q 014801 258 YIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 335 (418)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 335 (418)
.+..+...+...+...+... .+.++||||++++.++.+++.|.+.++++..+|+ .+.+|...+..|..+...|+||
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 44455566777777777544 6789999999999999999999999999999997 5778888899999999999999
Q ss_pred ecccccCCCCC---CCC-----EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 336 TDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 336 t~~l~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
|+++++|+|++ .+. +||....+.|...+.|++||+||.|.+|.++.|++.+++.
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999999 343 4578888899999999999999999999999999966555
No 121
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.9e-22 Score=176.06 Aligned_cols=303 Identities=18% Similarity=0.167 Sum_probs=195.9
Q ss_pred CCcHHHHHhHHhhhcC---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 59 HPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
.++|||..++..+.-+ ++.+|+.|+|+|||++.+-++..-.. ++|++|.+..-+.||..+|..++... +-
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK------~clvLcts~VSVeQWkqQfk~wsti~-d~ 374 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKK------SCLVLCTSAVSVEQWKQQFKQWSTIQ-DD 374 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecc------cEEEEecCccCHHHHHHHHHhhcccC-cc
Confidence 6899999999998864 46899999999999875433332211 79999999999999999999887554 44
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC--------CCCCCCccEEEEechhhhccCCCCHHHHHHHH
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--------DLSLKNVRHFILDECDKMLESLDMRRDVQEIF 207 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~ 207 (418)
.++.++.+.. ......+.|+|+|+.++..--++. .+.-+.++++++||+|.+.. ..|+..+..+.
T Consensus 375 ~i~rFTsd~K------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MFRRVlsiv~ 447 (776)
T KOG1123|consen 375 QICRFTSDAK------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMFRRVLSIVQ 447 (776)
T ss_pred ceEEeecccc------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHHHHHHHHHH
Confidence 5555554322 222334689999997764321110 01123467899999997765 44554444444
Q ss_pred hhCCCCccEEEEEecCCccHHHHHH----------------HhcC-CCeEEEEcCCcc----------cccccceEEEEE
Q 014801 208 KMTPHDKQVMMFSATLSKEIRPVCK----------------KFMQ-DPMEIYVDDEAK----------LTLHGLVQHYIK 260 (418)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~ 260 (418)
.++ .+++|||+-.+...+.. ..-+ ....+....... ............
T Consensus 448 aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLy 522 (776)
T KOG1123|consen 448 AHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLY 522 (776)
T ss_pred HHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheee
Confidence 433 48999998544222111 1000 000000000000 000000011111
Q ss_pred echhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh-cCCccEEEEec
Q 014801 261 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK-EGNKRILVATD 337 (418)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~t~ 337 (418)
.-...+.....-+++-+ .+.++|||..++-....++-.|.+ -.++|..++.+|..+++.|+ +..++.++.+.
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 12223344433333322 678999999998888888776643 46789999999999999998 45678899999
Q ss_pred ccccCCCCCCCCEEEEecCC-CChhhhhhhcccccCCCC------ceeEEEEecC
Q 014801 338 LVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGT------KGLAITFVSS 385 (418)
Q Consensus 338 ~l~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~ 385 (418)
+..+.+|+|.++++|....- .|-.+-.||+||..|..+ ....+.+++.
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 99999999999999987654 488899999999998532 2445666663
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.88 E-value=1.2e-20 Score=183.52 Aligned_cols=317 Identities=18% Similarity=0.208 Sum_probs=219.5
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
..+..+.+.++.+.+++.+++.|.||+|||.-..-.+++....++...++++--|++--+..+++++..--....+-.|+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 45778889999999999999999999999987777777776555566678888899877777777765433222243443
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.-....+ .......+.+||.+.+++.+.. .-.+.++..||+||+|.-.-..++.-.+.+.+-...++.++|+
T Consensus 253 Yqvrl~~-------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 253 YQVRLES-------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred EEEeeec-------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 3222111 1111258999999999998877 4568899999999999876656776666666666668899999
Q ss_pred EEecCCccHHHHHHHhcCCCeEEEEcCCcc----------------------cc--cccc--eEEEEE-echhhHHHHHH
Q 014801 219 FSATLSKEIRPVCKKFMQDPMEIYVDDEAK----------------------LT--LHGL--VQHYIK-LSELEKNRKLN 271 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~--~~~~--~~~~~~-~~~~~~~~~l~ 271 (418)
||||+..+ .+..+++....+.+..... .. .+.- ...... .......+.+.
T Consensus 325 MSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 325 MSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred eeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 99998733 2333333222222111000 00 0000 000000 00112223333
Q ss_pred HHHh----hcCCCeEEEEeCCchhHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccc
Q 014801 272 DLLD----ALDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 340 (418)
Q Consensus 272 ~~~~----~~~~~~~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~ 340 (418)
.++. ....+.+|||.+..+++..+.+.|... ..-+..+|+.++..+++.+....-.|..+|+++|.+++
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 3332 234688999999999999999998642 23456689999999999998888899999999999999
Q ss_pred cCCCCCCCCEEEEecC--------C----------CChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 341 RGIDIERVNIVINYDM--------P----------DSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 341 ~G~d~~~~~~vi~~~~--------~----------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
.+|.++++-.||..+. . -|...-.||.|||||. ++|.|+-++....
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999995442 2 2667789999999997 7999999988543
No 123
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.88 E-value=9.4e-22 Score=191.40 Aligned_cols=341 Identities=18% Similarity=0.242 Sum_probs=219.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHH---HHhhhccCCCCCCeeEEE
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALV 110 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~---l~~~~~~~~~~~~~~~li 110 (418)
.|..+-..|+.+.. .+||.||-+.++.++. ++++|++...|-|||.-.+ -.+...... .+ ..|+
T Consensus 355 ~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--~g-pflv 425 (1373)
T KOG0384|consen 355 RFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI--HG-PFLV 425 (1373)
T ss_pred hHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc--cC-CeEE
Confidence 34444444444332 5899999999988775 7899999999999995432 222222211 22 4799
Q ss_pred ecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcC-----CCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 111 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNE-----CPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 111 i~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
++|...+ ..|.++|..+. ++++.+++|+......... .... ..+++++|++.++.--. .+.--.+
T Consensus 426 vvplst~-~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w 498 (1373)
T KOG0384|consen 426 VVPLSTI-TAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPW 498 (1373)
T ss_pred Eeehhhh-HHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCc
Confidence 9997654 55999999886 8899999998654433222 1222 36899999999975211 1112245
Q ss_pred cEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc-cHHHHHHH-hcCCCeEEEE-----------------
Q 014801 183 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCKK-FMQDPMEIYV----------------- 243 (418)
Q Consensus 183 ~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~-~~~~~~~~~~----------------- 243 (418)
.+++|||||.+.+ .....+.. +..+..+ ..+++|+||-. .+..+... .+..|.....
T Consensus 499 ~~~~vDeahrLkN--~~~~l~~~-l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~ 574 (1373)
T KOG0384|consen 499 RYLLVDEAHRLKN--DESKLYES-LNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVR 574 (1373)
T ss_pred ceeeecHHhhcCc--hHHHHHHH-HHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHH
Confidence 6799999999986 32333333 3333332 35888888732 22211110 0111111100
Q ss_pred --------------cCCcccccccceEEEEEe------------------------------------------------
Q 014801 244 --------------DDEAKLTLHGLVQHYIKL------------------------------------------------ 261 (418)
Q Consensus 244 --------------~~~~~~~~~~~~~~~~~~------------------------------------------------ 261 (418)
.......+..-...++.+
T Consensus 575 ~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyL 654 (1373)
T KOG0384|consen 575 KLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYL 654 (1373)
T ss_pred HHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccc
Confidence 000000000001111111
Q ss_pred ---chhhH---------HHH-------------HHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014801 262 ---SELEK---------NRK-------------LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 314 (418)
Q Consensus 262 ---~~~~~---------~~~-------------l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 314 (418)
.+... ... |..++..+ .++++|||.+-+.....++++|...+++...+.|++.
T Consensus 655 i~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvr 734 (1373)
T KOG0384|consen 655 IKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVR 734 (1373)
T ss_pred cCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcc
Confidence 00000 012 22222222 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc---CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCcee--EEEEecCCCc-
Q 014801 315 QEERLTRYKGFKE---GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL--AITFVSSASD- 388 (418)
Q Consensus 315 ~~~r~~~~~~f~~---g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~~~- 388 (418)
.+.|++.++.|+. .++.+|+||.+.+.|||+..++.||+|+..|++..-+|...||.|.||+.. +|-++..+.-
T Consensus 735 gelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 735 GELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 9999999999974 456788999999999999999999999999999999999999999998854 4555664432
Q ss_pred HHHHHHHHHH
Q 014801 389 SDILNQVQAR 398 (418)
Q Consensus 389 ~~~~~~~~~~ 398 (418)
.++++.....
T Consensus 815 eEilERAk~K 824 (1373)
T KOG0384|consen 815 EEILERAKLK 824 (1373)
T ss_pred HHHHHHHHHH
Confidence 2444444433
No 124
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=3.4e-20 Score=177.39 Aligned_cols=316 Identities=16% Similarity=0.117 Sum_probs=199.5
Q ss_pred CCcHHHHHhHHhhhc---C-------CcEEEEccCCCchhhHHHHHhhhccCCCCC----CeeEEEecCcHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAIL---G-------MDVICQAKSGMGKTAVFVLSTLQQTEPNPG----QVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~---~-------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~----~~~~lii~P~~~l~~q~~~~ 124 (418)
.++|||++.+.-+.. | ..++++..+|+|||+..+..+...+...+. -.+.|||+| ..|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 689999999987765 2 248889999999998766666666655554 137899999 5889999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHH------HHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC
Q 014801 125 FERFSTYLPDIKVAVFYGGVNIKIH------KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
|.++.... .+....+.+....... ......-..-|++.+++.+....+. +....++++|+||.|..-+.
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 99987643 5666666665442100 0111122246888888888755443 45578899999999988652
Q ss_pred CHHHHHHHHhhCCCCccEEEEEecCCcc-H--------------------------------------------------
Q 014801 199 MRRDVQEIFKMTPHDKQVMMFSATLSKE-I-------------------------------------------------- 227 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~-~-------------------------------------------------- 227 (418)
.. .+...+..+ +..+.|++|+||-.+ .
T Consensus 392 ~s-~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 DS-LTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred hh-HHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 22 222233333 345689999997110 0
Q ss_pred -HHHHHHhcC------------CCeEEE--EcCCc---------------------------------------------
Q 014801 228 -RPVCKKFMQ------------DPMEIY--VDDEA--------------------------------------------- 247 (418)
Q Consensus 228 -~~~~~~~~~------------~~~~~~--~~~~~--------------------------------------------- 247 (418)
..+...++. -...+. .....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000000000 000000 00000
Q ss_pred -----------ccccccceEEEEEechhhHHHHHHHHHhhc---CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCC
Q 014801 248 -----------KLTLHGLVQHYIKLSELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 313 (418)
Q Consensus 248 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 313 (418)
..................+...|..++... ...++++..|.....+.+...++-.|+.+..++|.+
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 000000000000011122233344443222 113444445555555556666666699999999999
Q ss_pred CHHHHHHHHHhhhcCCc--cEE-EEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEE
Q 014801 314 SQEERLTRYKGFKEGNK--RIL-VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 382 (418)
Q Consensus 314 ~~~~r~~~~~~f~~g~~--~vl-v~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 382 (418)
+..+|..+++.|++..- .|+ .++.+.++|+|+-+++.||.+|+.||++.-.|+++||.|.||+..|++|
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999986432 454 4678999999999999999999999999999999999999999888764
No 125
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=4.3e-21 Score=176.37 Aligned_cols=309 Identities=16% Similarity=0.152 Sum_probs=200.9
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
....++.+.+..+..++-++|.+.||||||.-..-.++..-.... + -+-+--|++.-+..++++...-....-|-.|+
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~-G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADN-G-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccC-C-eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 345677777777777888999999999999754333333333222 2 34455599988888887765433111133332
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
. ..+.+........|-++|-..|++-.-... .+.+++.||+||||.-.-..+....+.+.....+.+.++|.
T Consensus 434 Y-------sIRFEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 434 Y-------SIRFEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred e-------EEEeeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 2 222222233345788999998887444333 57899999999999765433433333333334445788999
Q ss_pred EEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHH-HHHHHHh---hcCCCeEEEEeCCchhHHH
Q 014801 219 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-KLNDLLD---ALDFNQVVIFVKSVSRAAE 294 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~---~~~~~~~lif~~~~~~~~~ 294 (418)
+|||+.. ..+...+.+-|.........+ +...+...+..+-.+ .+...+. ....+.+|||....+..+.
T Consensus 506 tSATm~a--~kf~nfFgn~p~f~IpGRTyP-----V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 506 TSATMDA--QKFSNFFGNCPQFTIPGRTYP-----VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred eeccccH--HHHHHHhCCCceeeecCCccc-----eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 9999964 344444443554443332221 111122222222111 1222221 2245789999998887766
Q ss_pred HHHHHHh----C------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC--------
Q 014801 295 LNKLLVE----C------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-------- 356 (418)
Q Consensus 295 ~~~~L~~----~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~-------- 356 (418)
.+..+.. . +..+..+++.++.+-+..++..-..|-.+++|+|+++++.+.+|++..||..+.
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 5555433 2 456788999999999999977777788899999999999999999999996553
Q ss_pred ----------CCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 357 ----------PDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 357 ----------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|-|.+..-||.|||||.| +|.|+-++..
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 347778899999999986 9999998884
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=1.1e-19 Score=161.44 Aligned_cols=327 Identities=14% Similarity=0.164 Sum_probs=215.6
Q ss_pred CCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 59 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
.|-|+|++.+...+. |.++++...+|-|||.-++. +........ ..||+||. ++...|++.++++.... ..+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEw---plliVcPA-svrftWa~al~r~lps~--~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEW---PLLIVCPA-SVRFTWAKALNRFLPSI--HPI 270 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcC---cEEEEecH-HHhHHHHHHHHHhcccc--cce
Confidence 567999999987665 88999999999999987543 333333222 58999994 67778999999987553 224
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
.++.++.... ........|.|.+++.+..+-.. +.-..++++|+||+|.+.+ +.......+........++|
T Consensus 271 ~vv~~~~D~~----~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 271 FVVDKSSDPL----PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EEEecccCCc----cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhc--cchhhhhhhhhHHHHhhheE
Confidence 4444432211 01111247999999988765332 2224578899999999986 44445555555555667899
Q ss_pred EEEecCCc----c---------------HHHHHHHhcCC-CeEEEEcCCccc-------------------------ccc
Q 014801 218 MFSATLSK----E---------------IRPVCKKFMQD-PMEIYVDDEAKL-------------------------TLH 252 (418)
Q Consensus 218 ~lSAT~~~----~---------------~~~~~~~~~~~-~~~~~~~~~~~~-------------------------~~~ 252 (418)
++|+|+.- + ...+..+++.- ......+..... -..
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPp 422 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPP 422 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999831 1 11222233221 111111100000 000
Q ss_pred cceEEEEEech--hh-----------------------------------HHHHHHHHHhh------cCCCeEEEEeCCc
Q 014801 253 GLVQHYIKLSE--LE-----------------------------------KNRKLNDLLDA------LDFNQVVIFVKSV 289 (418)
Q Consensus 253 ~~~~~~~~~~~--~~-----------------------------------~~~~l~~~~~~------~~~~~~lif~~~~ 289 (418)
...+..+.++. .. +...+.+.+.. .++.|.+||+...
T Consensus 423 Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~ 502 (689)
T KOG1000|consen 423 KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQ 502 (689)
T ss_pred cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhH
Confidence 00111111110 00 01111122211 2457999999999
Q ss_pred hhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc-CCccEEE-EecccccCCCCCCCCEEEEecCCCChhhhhhhc
Q 014801 290 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE-GNKRILV-ATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 367 (418)
Q Consensus 290 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv-~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 367 (418)
...+-+...+.+.++....+.|..+..+|....+.|+- .+++|.| +-.+.+.|+++...++|++...+|++.-++|.-
T Consensus 503 ~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAE 582 (689)
T KOG1000|consen 503 IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAE 582 (689)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEech
Confidence 99999999999999999999999999999999999985 4556554 568889999999999999999999999999999
Q ss_pred ccccCCCCceeEEEEe---cCCCcHHHHHHHHHHhc
Q 014801 368 GRAGRFGTKGLAITFV---SSASDSDILNQVQARFE 400 (418)
Q Consensus 368 GR~~R~~~~g~~~~~~---~~~~~~~~~~~~~~~~~ 400 (418)
.|+.|.||+..+.+++ ....|+..|..+++.+.
T Consensus 583 DRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 583 DRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 9999999986654433 24466677888877764
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=7.9e-20 Score=155.05 Aligned_cols=187 Identities=35% Similarity=0.514 Sum_probs=146.8
Q ss_pred CCCCCCcHHHHHhHHhhhcC-CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 55 SGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.++..++++|.+++..+... +.+++.++||+|||.++...+...+...... ++++++|+..++.|+.+.+.......
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~- 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGK-RVLVLVPTRELAEQWAEELKKLGPSL- 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCC-cEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 35678999999999999998 9999999999999998888888887765433 79999999999999999998876543
Q ss_pred CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCC
Q 014801 134 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 213 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~ 213 (418)
........++.........+.....+++++|++.+.............++++|+||+|.+.. ......+..+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD-GGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc-CCcHHHHHHHHHhCCcc
Confidence 22333333443333333344444349999999999998888777778899999999999986 36667777777777778
Q ss_pred ccEEEEEecCCccHHHHHHHhcCCCeEEEEc
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
.+++++|||++.........+..+...+...
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8999999999988888888877765555443
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=8.8e-19 Score=175.18 Aligned_cols=331 Identities=16% Similarity=0.187 Sum_probs=200.5
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH-HHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~-~~~~~~~~~~~~ 133 (418)
+.|+-|.+....+.+ ++.+++.|+||+|||++|+++++.... +.+++|.+||++|++|+ .+.+..+....
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~----~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~- 319 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD----QRQIIVSVPTKILQDQIMAEEVKAIQEVF- 319 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC----CCcEEEEeCcHHHHHHHHHHHHHHHHHhc-
Confidence 789999986555443 677999999999999999999887642 23899999999999999 56677666555
Q ss_pred CceEEEEEcCcchH------H------------------------------------------HHHH-------------
Q 014801 134 DIKVAVFYGGVNIK------I------------------------------------------HKDL------------- 152 (418)
Q Consensus 134 ~~~~~~~~~~~~~~------~------------------------------------------~~~~------------- 152 (418)
++++..+.|+.++- . +...
T Consensus 320 ~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~ 399 (820)
T PRK07246 320 HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFY 399 (820)
T ss_pred CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcc
Confidence 66666666543210 0 0000
Q ss_pred ---------hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC------CCC-----HH-----------
Q 014801 153 ---------LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM-----RR----------- 201 (418)
Q Consensus 153 ---------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~------~~~-----~~----------- 201 (418)
-....++|+|+++..|...+.... .+...+.+||||||++.+. ..+ ..
T Consensus 400 ~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 478 (820)
T PRK07246 400 DYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLP 478 (820)
T ss_pred hhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHH
Confidence 000226899999998887654433 3678999999999988632 000 00
Q ss_pred -----------------------------------H-------H--------HHHHhh----------------------
Q 014801 202 -----------------------------------D-------V--------QEIFKM---------------------- 209 (418)
Q Consensus 202 -----------------------------------~-------~--------~~~~~~---------------------- 209 (418)
. + ..++..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~ 558 (820)
T PRK07246 479 LLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNS 558 (820)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEe
Confidence 0 0 000000
Q ss_pred -----------CCCCccEEEEEecCCc-cHHHHHHHhcCCCeEEEEcCCcccccccceEEEEE--ec------hhhHHHH
Q 014801 210 -----------TPHDKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK--LS------ELEKNRK 269 (418)
Q Consensus 210 -----------~~~~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~ 269 (418)
......+|++|||++. ....+...+..+... ..... .........++. .+ ...-.+.
T Consensus 559 ~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~-~~~~~--~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 635 (820)
T PRK07246 559 ASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYL-FHKIE--KDKKQDQLVVVDQDMPLVTETSDEVYAEE 635 (820)
T ss_pred eeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccc-eecCC--CChHHccEEEeCCCCCCCCCCChHHHHHH
Confidence 0011267899999952 112233332222111 11110 011111111110 11 1111112
Q ss_pred HHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 270 LNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 270 l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
+.+.+.. ..+++++|+++|.+..+.+++.|....... ...+... .+..+++.|++++-.||++|+..++|+|+|.
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 2222211 245899999999999999999987654444 3333211 2455788899988899999999999999984
Q ss_pred --CCEEEEecCCC----C--------------------------hhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHH
Q 014801 348 --VNIVINYDMPD----S--------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQ 394 (418)
Q Consensus 348 --~~~vi~~~~~~----s--------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~ 394 (418)
...+|+...|. + ...+.|.+||..|......++++++.. ....+-+.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~ 792 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQ 792 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHH
Confidence 45566666553 1 233679999999987665566666644 44556666
Q ss_pred HHHHhcc
Q 014801 395 VQARFEV 401 (418)
Q Consensus 395 ~~~~~~~ 401 (418)
+.+.+..
T Consensus 793 ~l~sLP~ 799 (820)
T PRK07246 793 ILASLAE 799 (820)
T ss_pred HHHhCCC
Confidence 6666654
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=7.6e-19 Score=172.09 Aligned_cols=133 Identities=22% Similarity=0.360 Sum_probs=120.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC-
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 356 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~- 356 (418)
.+.++||||++.+.++.+++.|.+.|+++..+|++++..+|..+++.|++|.++|+|||+.+++|+|+|.+++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCChhhhhhhcccccCCCCceeEEEEecCC--------CcHHHHHHHHHHhccCccccCcccc
Q 014801 357 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA--------SDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 357 ----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|.+...|+||+||+||. ..|.++++++.. ++...++.++..++.....+|..+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHH
Confidence 67999999999999996 789999999843 4556677788888888888887664
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.4e-19 Score=173.92 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=211.5
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-..-.+. ..-+..+.||-|||+++.+++.-.+..+. .|-+++...-|+..-++++..+...+ |+.++
T Consensus 78 r~ydVQliGglvLh--~G~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fL-GLsvG 151 (925)
T PRK12903 78 RPYDVQIIGGIILD--LGSVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFL-GLSVG 151 (925)
T ss_pred CcCchHHHHHHHHh--cCCeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHh-CCcee
Confidence 66777766654444 44589999999999999888876555444 57888999999998888888888887 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHhcC------CCCCCCccEEEEechhhhccCC------------C-
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLESL------------D- 198 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~~~------~~~~~~~~~iViDE~h~~~~~~------------~- 198 (418)
+...+.........+. +||.++|...|. ..++.. ......+.+.||||++.+.=+. .
T Consensus 152 ~i~~~~~~~~rr~aY~---~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~ 228 (925)
T PRK12903 152 INKANMDPNLKREAYA---CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSND 228 (925)
T ss_pred eeCCCCChHHHHHhcc---CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccc
Confidence 9888777666666554 499999998763 244432 1224668889999999775110 0
Q ss_pred --CHHHHHHHHhhC------------------------------------------------------------------
Q 014801 199 --MRRDVQEIFKMT------------------------------------------------------------------ 210 (418)
Q Consensus 199 --~~~~~~~~~~~~------------------------------------------------------------------ 210 (418)
.......+...+
T Consensus 229 ~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg 308 (925)
T PRK12903 229 SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDG 308 (925)
T ss_pred hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECC
Confidence 000000000000
Q ss_pred --------------------------------------------------CCCccEEEEEecCCccHHHHHHHhcCCCeE
Q 014801 211 --------------------------------------------------PHDKQVMMFSATLSKEIRPVCKKFMQDPME 240 (418)
Q Consensus 211 --------------------------------------------------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~ 240 (418)
....++.+||+|...+...+..-+..+ .
T Consensus 309 ~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~--V 386 (925)
T PRK12903 309 KIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR--V 386 (925)
T ss_pred EEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC--E
Confidence 000156777777665444333322222 2
Q ss_pred EEEcCCcccccccceEEEEEechhhHHHHHHH-HHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 014801 241 IYVDDEAKLTLHGLVQHYIKLSELEKNRKLND-LLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 318 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r 318 (418)
+.+.. .......-.+..+..+...+...+.. +...+ .+.++||.|.+++..+.++..|.+.|++..++++.....+.
T Consensus 387 v~IPT-nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA 465 (925)
T PRK12903 387 NVVPT-NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREA 465 (925)
T ss_pred EECCC-CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHH
Confidence 22222 22222222222334445455544444 33333 67899999999999999999999999999999987544443
Q ss_pred HHHHHhhhcCC-ccEEEEecccccCCCCCCCC--------EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 319 LTRYKGFKEGN-KRILVATDLVGRGIDIERVN--------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 319 ~~~~~~f~~g~-~~vlv~t~~l~~G~d~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
..+- +.|. -.|.|||+++++|.|+.--. +||....+.|..--.|..||+||.|.+|.+..|++-.|+.
T Consensus 466 ~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 466 EIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred HHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 3332 3343 25889999999999986322 7888888899999999999999999999999999966554
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.84 E-value=1.1e-19 Score=176.67 Aligned_cols=326 Identities=16% Similarity=0.204 Sum_probs=207.5
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCC------CCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+||.||++.++++.. +-+.|+|.++|-|||+-.+..+.....+.. .....|||||+ .|+..|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 579999999998765 567999999999999876555544333321 12238999995 7899999999998
Q ss_pred hccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHh
Q 014801 129 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 208 (418)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~ 208 (418)
+.. +++....|..........-. ..++|+|++++.+.+-+.. +.-..+.++|+||-|-+.+. ...+....+
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~-~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~---ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQY-KNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS---KTKLTKAVK 1124 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhc-cccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch---HHHHHHHHH
Confidence 744 46655566533322222111 2359999999988652221 11124567999999988652 334444444
Q ss_pred hCCCCccEEEEEecCCcc-HH-----------------------------------------------------------
Q 014801 209 MTPHDKQVMMFSATLSKE-IR----------------------------------------------------------- 228 (418)
Q Consensus 209 ~~~~~~~~i~lSAT~~~~-~~----------------------------------------------------------- 228 (418)
.+..+. .+.+|+||-.+ +.
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 443333 57889996111 00
Q ss_pred -----------------------------HHHHHhcCC---CeEEEEcCCccccccc--------------ce--EEEEE
Q 014801 229 -----------------------------PVCKKFMQD---PMEIYVDDEAKLTLHG--------------LV--QHYIK 260 (418)
Q Consensus 229 -----------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~--------------~~--~~~~~ 260 (418)
.+.+.+... .....++.. ...... +. ..++.
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~-~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGG-EESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccc-hhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 000000000 000000000 000000 00 00111
Q ss_pred e-----------------------chhhHHHHHHHHHhhc----------------CCCeEEEEeCCchhHHHHHHHHHh
Q 014801 261 L-----------------------SELEKNRKLNDLLDAL----------------DFNQVVIFVKSVSRAAELNKLLVE 301 (418)
Q Consensus 261 ~-----------------------~~~~~~~~l~~~~~~~----------------~~~~~lif~~~~~~~~~~~~~L~~ 301 (418)
. ....+...+..++... ..++++|||+-...+..+.+.|-+
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 1 1112344555555443 236899999999999999888765
Q ss_pred CC---CCeEEecCCCCHHHHHHHHHhhhcC-CccEEE-EecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCc
Q 014801 302 CN---FPSICIHSGMSQEERLTRYKGFKEG-NKRILV-ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 376 (418)
Q Consensus 302 ~~---~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 376 (418)
.. +....+.|+.++.+|.++.+.|+++ .++||+ +|.+.+.|+|+.+++.||+++-.|++..-.|.+-||.|.||+
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 42 3345688999999999999999998 778876 678999999999999999999999999999999999999988
Q ss_pred eeEE--EEecCCCcHHHHHHHH
Q 014801 377 GLAI--TFVSSASDSDILNQVQ 396 (418)
Q Consensus 377 g~~~--~~~~~~~~~~~~~~~~ 396 (418)
..|- -++....-.+.+..++
T Consensus 1443 rvVNVyRlItrGTLEEKVMgLQ 1464 (1549)
T KOG0392|consen 1443 RVVNVYRLITRGTLEEKVMGLQ 1464 (1549)
T ss_pred eeeeeeeehhcccHHHHHhhHH
Confidence 6654 4555444444343333
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=2.4e-19 Score=167.72 Aligned_cols=331 Identities=19% Similarity=0.245 Sum_probs=213.4
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHH--HHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~--~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
+|.+||.-.++++.- +-++|+....|-|||.-. .++.+..... .+ .=|||||+..| +.|.++|.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~--~g-pHLVVvPsSTl-eNWlrEf~kwC--- 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN--PG-PHLVVVPSSTL-ENWLREFAKWC--- 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC--CC-CcEEEecchhH-HHHHHHHHHhC---
Confidence 589999999988653 567899999999999432 2333333332 23 45999998665 55988888886
Q ss_pred CCceEEEEEcCcchHHHH-HHhhc--CCCcEEEeccHHHHHHHh-cCCCCCCCccEEEEechhhhccCCCCHHHHHHHHh
Q 014801 133 PDIKVAVFYGGVNIKIHK-DLLKN--ECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 208 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~v~T~~~l~~~~~-~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~ 208 (418)
|.++|..++|........ ..+.. ..++|+++|+..+..--. +.-+.-.+++++|+||.|.+.+ .-..++..+..
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN--~~SeRy~~LM~ 549 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN--RTSERYKHLMS 549 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc--cchHHHHHhcc
Confidence 688999999976433222 22222 357999999987742111 1111234678899999999987 44566666655
Q ss_pred hCCCCccEEEEEecCCc-cHHH----------------------------------------------------------
Q 014801 209 MTPHDKQVMMFSATLSK-EIRP---------------------------------------------------------- 229 (418)
Q Consensus 209 ~~~~~~~~i~lSAT~~~-~~~~---------------------------------------------------------- 229 (418)
.. ....+++|+||-. ++..
T Consensus 550 I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 IN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred cc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 54 3456899999610 0000
Q ss_pred ----HHHHhcCCCeEEE-------------------------EcCC--ccc--c---cc------cceEEEE--------
Q 014801 230 ----VCKKFMQDPMEIY-------------------------VDDE--AKL--T---LH------GLVQHYI-------- 259 (418)
Q Consensus 230 ----~~~~~~~~~~~~~-------------------------~~~~--~~~--~---~~------~~~~~~~-------- 259 (418)
.+..+......+. .... ... . ++ -+...++
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0000000000000 0000 000 0 00 0000000
Q ss_pred -----------Ee-------------------------------------chhhHHHHHHHHHhhc--CCCeEEEEeCCc
Q 014801 260 -----------KL-------------------------------------SELEKNRKLNDLLDAL--DFNQVVIFVKSV 289 (418)
Q Consensus 260 -----------~~-------------------------------------~~~~~~~~l~~~~~~~--~~~~~lif~~~~ 289 (418)
.. -.+.+...|..++... .+.++|||..--
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 00 0112233455555444 458999999998
Q ss_pred hhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC-c-cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhc
Q 014801 290 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-K-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 367 (418)
Q Consensus 290 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 367 (418)
.....+...|.-.++....+.|...-.+|..+++.|..++ + -.|++|.+.+.|||+..+++||+++...++..-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 8888888899999999999999999999999999998654 3 4566899999999999999999999999999999999
Q ss_pred ccccCCCCceeEE--EEecCC-CcHHHHHHHHHHhc
Q 014801 368 GRAGRFGTKGLAI--TFVSSA-SDSDILNQVQARFE 400 (418)
Q Consensus 368 GR~~R~~~~g~~~--~~~~~~-~~~~~~~~~~~~~~ 400 (418)
-|+.|.||...|. -++..+ -+..+.+.-+..+.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 9999999876554 445533 33344444444443
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=4e-18 Score=164.85 Aligned_cols=274 Identities=20% Similarity=0.209 Sum_probs=176.4
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-.. +.-.+.-+..+.||.|||+++.+++.-....+. .|.+++++..|+.+-++++..+...+ |+.++
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~---~VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg 149 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHIVTVNDYLAKRDQEWMGQIYRFL-GLTVG 149 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhcCC---ceEEEeCCHHHHHHHHHHHHHHHHHc-CCcee
Confidence 4667776553 444567899999999999999888864444333 68999999999999999999988888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHhcC------CCCCCCccEEEEechhhhccCC--------------
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDK------DLSLKNVRHFILDECDKMLESL-------------- 197 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~~~------~~~~~~~~~iViDE~h~~~~~~-------------- 197 (418)
.+.++.+...+...+. .||.++|...|. ..++.. ......+.+.||||+|.+.=+.
T Consensus 150 ~i~~~~~~~err~aY~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~ 226 (870)
T CHL00122 150 LIQEGMSSEERKKNYL---KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTN 226 (870)
T ss_pred eeCCCCChHHHHHhcC---CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccc
Confidence 9988877776666555 389999987553 233322 1124568899999999775100
Q ss_pred ------------------CC---------------HHHHHHHH-----------------h-------------------
Q 014801 198 ------------------DM---------------RRDVQEIF-----------------K------------------- 208 (418)
Q Consensus 198 ------------------~~---------------~~~~~~~~-----------------~------------------- 208 (418)
.| ...+..++ .
T Consensus 227 ~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg 306 (870)
T CHL00122 227 IDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNN 306 (870)
T ss_pred hHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 00 00000000 0
Q ss_pred ------------------------------------------------hCCCCccEEEEEecCCccHHHHHHHhcCCCeE
Q 014801 209 ------------------------------------------------MTPHDKQVMMFSATLSKEIRPVCKKFMQDPME 240 (418)
Q Consensus 209 ------------------------------------------------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~ 240 (418)
++....++.+||+|...+...+ ....+-..
T Consensus 307 eV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~iY~l~v- 384 (870)
T CHL00122 307 EIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EKIYNLEV- 384 (870)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HHHhCCCE-
Confidence 0000116788888886643333 33333222
Q ss_pred EEEcCCcccccccceEEEEEechhhHHH-HHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCC-C-HH
Q 014801 241 IYVDDEAKLTLHGLVQHYIKLSELEKNR-KLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM-S-QE 316 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~-~-~~ 316 (418)
+.+....+...... +..+......+.. .+.++...+ .+.++||-+.+++..+.++..|.+.+++..++++.- . ..
T Consensus 385 v~IPtnkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~ 463 (870)
T CHL00122 385 VCIPTHRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRR 463 (870)
T ss_pred EECCCCCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchh
Confidence 22333333333333 3333444444444 444444433 668999999999999999999999999999999863 2 33
Q ss_pred HHHHHHHhhhcCCccEEEEecccccCCCCC
Q 014801 317 ERLTRYKGFKEGNKRILVATDLVGRGIDIE 346 (418)
Q Consensus 317 ~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~ 346 (418)
+...+-++=+.| .|-|||+++++|.|+.
T Consensus 464 EA~IIA~AG~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 464 ESEIVAQAGRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHhcCCCC--cEEEeccccCCCcCee
Confidence 333332322333 4889999999999874
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=2.4e-17 Score=167.94 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=91.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC--CCEEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNIVIN 353 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~--~~~vi~ 353 (418)
.+++++|+++|.+..+.+++.|..... ....+.-+++...|..+++.|++++-.||++|+..++|+|+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975422 1223333444456788899999888889999999999999998 578888
Q ss_pred ecCCCC------------------------------hhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHHHHHHhc
Q 014801 354 YDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 400 (418)
Q Consensus 354 ~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 400 (418)
...|.. ...+.|.+||+.|..++..++++++.. ....+-+.+-+.+.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 776641 223579999999988776677777744 44555566666655
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.5e-19 Score=167.59 Aligned_cols=308 Identities=20% Similarity=0.179 Sum_probs=188.9
Q ss_pred HHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE
Q 014801 64 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 140 (418)
Q Consensus 64 Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 140 (418)
-++++.++..+.-++|||.||||||.-.--.+...-... ..+.-+=|--|++.-+.-++.+...-...+ +-.|...
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYq 339 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQ 339 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEE
Confidence 355667777778899999999999964322222221111 112235566698877766666554322222 2233221
Q ss_pred EcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH----HHHHHHHhhCC-----
Q 014801 141 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR----RDVQEIFKMTP----- 211 (418)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~----~~~~~~~~~~~----- 211 (418)
.+.+.-......|.++|-+.|++-+.+. +.+.+++.||+||||.-.-..+.. .++..+.....
T Consensus 340 -------IRfd~ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 340 -------IRFDGTIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred -------EEeccccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 1111111223589999999999877764 468899999999999643221211 11122222222
Q ss_pred -CCccEEEEEecCCccHHHHHHHhcCCC-eEEEEcCCcccccccceEEEEEechh----hHHHHHHHHHhhcCCCeEEEE
Q 014801 212 -HDKQVMMFSATLSKEIRPVCKKFMQDP-MEIYVDDEAKLTLHGLVQHYIKLSEL----EKNRKLNDLLDALDFNQVVIF 285 (418)
Q Consensus 212 -~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~lif 285 (418)
...++|.||||+.-....--+.++..+ -.+.++... ....-+|...... +.....-.+-+.++.+.+|||
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ----fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ----FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeeccc----CceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 256899999998643221112222221 122222111 1112222222221 223334445566788999999
Q ss_pred eCCchhHHHHHHHHHhCC---C----------------------------------------------------------
Q 014801 286 VKSVSRAAELNKLLVECN---F---------------------------------------------------------- 304 (418)
Q Consensus 286 ~~~~~~~~~~~~~L~~~~---~---------------------------------------------------------- 304 (418)
+....++..+++.|++.- +
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999998620 0
Q ss_pred --------------------------------------CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC
Q 014801 305 --------------------------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 346 (418)
Q Consensus 305 --------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~ 346 (418)
-+..+++-++.+.+.++++.-..|..=++|+|+++++.+.+|
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 033345666777777777777778888899999999999999
Q ss_pred CCCEEEEecCC------------------CChhhhhhhcccccCCCCceeEEEEecC
Q 014801 347 RVNIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 347 ~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
++..||..+.. .|.++--||.|||||.| +|+||-+++.
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999966532 26667789999999987 9999998884
No 136
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.81 E-value=6.7e-17 Score=154.74 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc----CCccEEEEecccccCCCC--------
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE----GNKRILVATDLVGRGIDI-------- 345 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~t~~l~~G~d~-------- 345 (418)
.+++++|.+.+....+.+++.|...-.-...+.|..+ .+..+++.|+. |.-.||++|+.+++|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4578999999999999999999654223333444332 34556777876 467899999999999999
Q ss_pred CC--CCEEEEecCCCC-------------------------hhhhhhhcccccCCCCc--eeEEEEecCCCcHHHHHHHH
Q 014801 346 ER--VNIVINYDMPDS-------------------------ADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQ 396 (418)
Q Consensus 346 ~~--~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~ 396 (418)
|+ +.+||+...|.. ...+.|-+||..|.... -.++.++++.....+-+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 33 888998777741 23367999999998776 66777777665556555555
Q ss_pred HHh
Q 014801 397 ARF 399 (418)
Q Consensus 397 ~~~ 399 (418)
...
T Consensus 627 ~~~ 629 (636)
T TIGR03117 627 ESV 629 (636)
T ss_pred HHH
Confidence 443
No 137
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=7.7e-19 Score=158.35 Aligned_cols=265 Identities=20% Similarity=0.243 Sum_probs=178.9
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
-++-+|||.||||.- +++++.... +.++..|.+-|+.++++.+.+. ++.+..++|....-.... .
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~---~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN---G 257 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC---C
Confidence 367799999999974 455554444 5699999999999999998876 888888888643221111 1
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh-
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF- 234 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~- 234 (418)
..++.+-||.|+.. --..+++.|+||++.+.+...=+..-+.++.......++++=-| +-++.+..
T Consensus 258 ~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGeps-----vldlV~~i~ 324 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPS-----VLDLVRKIL 324 (700)
T ss_pred CcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCch-----HHHHHHHHH
Confidence 23577888887763 12467889999999998754434444555555444444433222 23333333
Q ss_pred --cCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCC-eEEecC
Q 014801 235 --MQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHS 311 (418)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~-~~~~~~ 311 (418)
.++...+. .|-..+.....+.+..-+.+...+.+|| |-+++.+..+...+.+.+.. +.+++|
T Consensus 325 k~TGd~vev~--------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 325 KMTGDDVEVR--------------EYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred hhcCCeeEEE--------------eecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 33332221 1111111111122223334445555544 45667788888888877655 999999
Q ss_pred CCCHHHHHHHHHhhhc--CCccEEEEecccccCCCCCCCCEEEEecCC---------CChhhhhhhcccccCCCCc---e
Q 014801 312 GMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMP---------DSADTYLHRVGRAGRFGTK---G 377 (418)
Q Consensus 312 ~~~~~~r~~~~~~f~~--g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~~~---g 377 (418)
+++++.|.+.-..|++ ++++|+|||++++.|+|+ +++-||+++.- .+..+..|..|||||.|.. |
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999987 899999999999999998 68888887754 3678899999999998643 6
Q ss_pred eEEEEec
Q 014801 378 LAITFVS 384 (418)
Q Consensus 378 ~~~~~~~ 384 (418)
.+..+-.
T Consensus 469 ~vTtl~~ 475 (700)
T KOG0953|consen 469 EVTTLHS 475 (700)
T ss_pred eEEEeeH
Confidence 6666655
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.5e-18 Score=136.52 Aligned_cols=118 Identities=45% Similarity=0.646 Sum_probs=108.4
Q ss_pred hHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccC
Q 014801 265 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 342 (418)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G 342 (418)
.+...+..++... .++++||||++.+.++.+++.|.+.+.++..+|++++..+|..+++.|.++..+++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666666666665 47899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEE
Q 014801 343 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 382 (418)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 382 (418)
+|+|.++++|+++.+++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887653
No 139
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=8.1e-19 Score=158.60 Aligned_cols=354 Identities=14% Similarity=0.071 Sum_probs=230.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 46 PELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 46 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
+.+...++++.......+|.++++.+-+|++.++.-.+.+||.+++.++........... ..+++.|+++++....+-+
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCce
Confidence 334455555556678899999999999999999999999999999988877766554443 6799999999877654433
Q ss_pred HHHhccCC---CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc----CCCCCCCccEEEEechhhhccCCC
Q 014801 126 ERFSTYLP---DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~----~~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
.-.....+ +.-|... ++.+ +.....+......++++.++......-. .+..+-...++++||+|.+...
T Consensus 352 ~V~~~~I~~~K~A~V~~~-D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-- 427 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMS-DKLS-ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-- 427 (1034)
T ss_pred EEEEEehhhhhcceeecc-cCCC-chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc--
Confidence 21111111 1122222 2222 2333444444469999999988763332 2222344567999999987652
Q ss_pred CHHH----HHHHH---hhC--CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe---chh--
Q 014801 199 MRRD----VQEIF---KMT--PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---SEL-- 264 (418)
Q Consensus 199 ~~~~----~~~~~---~~~--~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 264 (418)
+... ++.+. ..+ ..+.+++-.+||+.+.++...+-+..+.......+..+...+.++..-... .+.
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhh
Confidence 2222 22222 111 235688889999987766554444444444433332222222111111000 111
Q ss_pred -hHH----HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHH----hCCC----CeEEecCCCCHHHHHHHHHhhhcCCcc
Q 014801 265 -EKN----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV----ECNF----PSICIHSGMSQEERLTRYKGFKEGNKR 331 (418)
Q Consensus 265 -~~~----~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~----~~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ 331 (418)
.+. ..+.+++. .+-++|.||+.++.|+.+-...+ +.+. .+..+.|++..++|..+...+-.|+..
T Consensus 508 ~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 112 22333332 34689999999999998754433 3222 345678999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEec-CCCcHHHHHHHHHHhccCcccc
Q 014801 332 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS-SASDSDILNQVQARFEVDIKEL 406 (418)
Q Consensus 332 vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 406 (418)
-+|+|++++.|+|+-.++.|++.+.|.|...+.|..|||||.+++...+++.. ..-|..++..-+..+.....++
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 99999999999999999999999999999999999999999888766554433 3455566666666666555544
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=6.1e-17 Score=156.51 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=96.4
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|.-. .+.-.+.-+..+.||.|||+++.+++.-.+..+. .+-+|+++.-|+..-++++..+...+ |+.++
T Consensus 85 r~ydVQliG--gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~L-GLtvg 158 (939)
T PRK12902 85 RHFDVQLIG--GMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFL-GLSVG 158 (939)
T ss_pred CcchhHHHh--hhhhcCCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHh-CCeEE
Confidence 456666544 4444667799999999999999888887666555 68999999999999999999888888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHh------cCCCCCCCccEEEEechhhhc
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALAR------DKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~------~~~~~~~~~~~iViDE~h~~~ 194 (418)
++.++.+...+...+. +||+++|...|. ..++ ........+.+.||||++.+.
T Consensus 159 ~i~~~~~~~err~aY~---~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 159 LIQQDMSPEERKKNYA---CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EECCCCChHHHHHhcC---CCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9988777666655443 499999998771 1222 122335678899999999775
No 141
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=148.61 Aligned_cols=325 Identities=15% Similarity=0.173 Sum_probs=198.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|.....++...+.+.+..--..+..+.+-+..+.+++-++++|.||+|||.-.--+.+........ .+..--|++
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCchH
Confidence 456888888999999888763323344444455555567889999999999997544444443332221 567777999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
.-+.+.+.+...-. ++..+.-.| +....+.......-+-+||-++|++-.-.. -.+.++++||+||+|.-.-
T Consensus 102 vaamsva~RVadEM----Dv~lG~EVG---ysIrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtl 173 (699)
T KOG0925|consen 102 VAAMSVAQRVADEM----DVTLGEEVG---YSIRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTL 173 (699)
T ss_pred HHHHHHHHHHHHHh----ccccchhcc---ccccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhH
Confidence 88888776654322 333322111 122222111111123356666666543332 3478999999999996432
Q ss_pred CCCC-HHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe-chhhHH----HH
Q 014801 196 SLDM-RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKN----RK 269 (418)
Q Consensus 196 ~~~~-~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~ 269 (418)
..+. ...++.+.... .+.++|.||||+.. ..+..++.++-.+.+..... ++.++.. .+.+.. ..
T Consensus 174 ATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~P------vEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 174 ATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGTHP------VEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred HHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCCCc------eEEEecCCCChhHHHHHHHH
Confidence 2222 22234444444 58899999999864 34556666654444433211 2222221 112222 22
Q ss_pred HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC---------CCCeEEecCCCCHHHHHHHHHhhh---cC--CccEEEE
Q 014801 270 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------NFPSICIHSGMSQEERLTRYKGFK---EG--NKRILVA 335 (418)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~vlv~ 335 (418)
+..+-.....+.+++|....++++..++.+.+. ...+..+| +.++..+++... +| ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEE
Confidence 222323335789999999999999998888753 12344455 334444433222 12 2479999
Q ss_pred ecccccCCCCCCCCEEEEec------------------CCCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 336 TDLVGRGIDIERVNIVINYD------------------MPDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 336 t~~l~~G~d~~~~~~vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|.+.+..+.++++.+||.-+ .|-|..+..||.||+||. ++|+|+.++..
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 99999999999999999544 345888999999999996 79999999883
No 142
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.77 E-value=4.5e-17 Score=145.09 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=100.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC-CccEEE-EecccccCCCCCCCCEEEEec
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILV-ATDLVGRGIDIERVNIVINYD 355 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~t~~l~~G~d~~~~~~vi~~~ 355 (418)
..-+.|||.+--.....+.-.|.+.|+.++.+.|+|++..|...++.|.++ +++|++ +-.+.+..+|+..+.+|+.++
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 335789999999999999999999999999999999999999999999864 566655 558889999999999999999
Q ss_pred CCCChhhhhhhcccccCCCCc--eeEEEEecCCCcHHHHHHHHHH
Q 014801 356 MPDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQAR 398 (418)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~ 398 (418)
+.|+++.-.|...|+.|.||- -.++.|+..+.-...+-.+++.
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 999999999999999998864 5666777655444444444444
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.76 E-value=2.8e-18 Score=143.53 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=103.1
Q ss_pred CCcHHHHHhHHhhhc-------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhcc
Q 014801 59 HPSEVQHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 131 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~ 131 (418)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+..... ++++++|+.+|++|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 689999999999884 578999999999999988765666555 7999999999999999999766533
Q ss_pred CCCceEEE-----------EEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC-----------CCCCCccEEEEec
Q 014801 132 LPDIKVAV-----------FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-----------LSLKNVRHFILDE 189 (418)
Q Consensus 132 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-----------~~~~~~~~iViDE 189 (418)
. ..... ...................+++++|.+.+........ .....+++||+||
T Consensus 77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 77 K--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp S--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred h--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 2 11111 0111111112223334456999999999987655321 2234678999999
Q ss_pred hhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 190 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 190 ~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
||++.+... +..+.. .....+++|||||.
T Consensus 155 aH~~~~~~~----~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDSS----YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHHH----HHHHHH--SSCCEEEEEESS-S
T ss_pred hhhcCCHHH----HHHHHc--CCCCeEEEEEeCcc
Confidence 998766211 334434 45567999999985
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=1.4e-16 Score=155.80 Aligned_cols=314 Identities=17% Similarity=0.205 Sum_probs=210.1
Q ss_pred CCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 59 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
..++.|.+.++.+.. +.++++.+|+|||||.++-++++. .....+++++.|..+.+...++.|.+-.....|.++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 348999999998776 667999999999999999888887 222338999999999998887777654444458999
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH----HHHHHHHhhCCCC
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR----RDVQEIFKMTPHD 213 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~----~~~~~~~~~~~~~ 213 (418)
..+.|........ +.. .+|+|+||+++..+. ..+.+++.|.||.|.+.+..+.. ..+..+...+.++
T Consensus 1219 ~~l~ge~s~~lkl--~~~--~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLKL--LQK--GQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchHH--hhh--cceEEechhHHHHHh-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhh
Confidence 9998876654322 222 499999999998772 56788999999999987643311 1145555666677
Q ss_pred ccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe--ch-hhH-----HHHHHHHHh-hcCCCeEEE
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL--SE-LEK-----NRKLNDLLD-ALDFNQVVI 284 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-----~~~l~~~~~-~~~~~~~li 284 (418)
.+++++|..+.+. +++ .+-.-...++.........+.-+...+ .. ... ......+.+ ...+++.+|
T Consensus 1290 ir~v~ls~~lana-~d~----ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~v 1364 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA-RDL----IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIV 1364 (1674)
T ss_pred eeEEEeehhhccc-hhh----ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEE
Confidence 8899999988764 333 221111122222222222222222222 21 111 112222222 236689999
Q ss_pred EeCCchhHHHHHHHHHhC----------------------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccC
Q 014801 285 FVKSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 342 (418)
Q Consensus 285 f~~~~~~~~~~~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G 342 (418)
|+++++.+..++..|-.. ..+..+=|.+++..+...+...|..|.+.|+|...- ..|
T Consensus 1365 f~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~ 1443 (1674)
T KOG0951|consen 1365 FLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYG 1443 (1674)
T ss_pred EeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccc
Confidence 999999999887544221 112222277888889999999999999999998766 777
Q ss_pred CCCCCCCEEEEec-----------CCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHH
Q 014801 343 IDIERVNIVINYD-----------MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 395 (418)
Q Consensus 343 ~d~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 395 (418)
+-.. .+.||..+ .+.+...+.||+|+|.| .|.|+++........+.+.+
T Consensus 1444 ~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1444 TKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred cccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 7654 34444322 34578889999999988 56899888865544443333
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=4.6e-18 Score=120.18 Aligned_cols=78 Identities=45% Similarity=0.729 Sum_probs=75.1
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCC
Q 014801 297 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 374 (418)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 374 (418)
+.|.+.++.+..+|++++..+|..+++.|++++.+|||||+++++|+|+|.+++||+++.++|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999999976
No 146
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=7.8e-17 Score=149.19 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=87.5
Q ss_pred CeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhh--cCCccEEE-EecccccCCCCCCCCEEEEecC
Q 014801 280 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK--EGNKRILV-ATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 280 ~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv-~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
.+++|...=.+....+...+.+.|.....++|.....+|..+++.|+ +|..+|++ .-.+.+.|+|+-..+|+|.++.
T Consensus 747 eK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 747 EKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred ceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 45566555555566777888888999999999999999999999997 45566665 5588899999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEE
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITF 382 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~ 382 (418)
-|++.--.|...|+.|.||+..++++
T Consensus 827 HWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 827 HWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCHHHHHHHHHHHHHhcccCceEEE
Confidence 99999999999999999999887753
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1.1e-16 Score=127.76 Aligned_cols=144 Identities=37% Similarity=0.489 Sum_probs=106.8
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 154 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (418)
+++++.+|||+|||.+++..+........ ..++++++|+..++.|+.+.+...... ...+..+.+...........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL- 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-
Confidence 46899999999999998887777766533 338999999999999999988887643 46777777765544433222
Q ss_pred cCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecC
Q 014801 155 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 223 (418)
Q Consensus 155 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (418)
....+|+++|++.+.............++++|+||+|.+... .................+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ-GFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc-chHHHHHHHHhhCCccceEEEEeccC
Confidence 334699999999998877766555678899999999998873 33332222334445667899999996
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.71 E-value=3.5e-15 Score=148.79 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=89.2
Q ss_pred HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHhhhcCCc-cEEEEecccccCCCCCC
Q 014801 270 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIER 347 (418)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~t~~l~~G~d~~~ 347 (418)
+..++...+ ++++||++|.+..+.+.+.+...... .....+.. .+...++.|.++.- -++|+|+.+++|+|+|+
T Consensus 471 i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 333444444 59999999999999999999876553 23333333 33366777776544 79999999999999998
Q ss_pred --CCEEEEecCCC------------------------------ChhhhhhhcccccCCCCceeEEEEecCCCcH-HHHHH
Q 014801 348 --VNIVINYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSASDS-DILNQ 394 (418)
Q Consensus 348 --~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~-~~~~~ 394 (418)
+..||+.+.|. -...+.|.+||+.|..+...++++++..-.. .+.+.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~ 626 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKL 626 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHH
Confidence 57788777664 2344689999999987777777777743222 34444
Q ss_pred HHHHhccC
Q 014801 395 VQARFEVD 402 (418)
Q Consensus 395 ~~~~~~~~ 402 (418)
+-+.+...
T Consensus 627 l~~~l~~~ 634 (654)
T COG1199 627 LLDSLPPF 634 (654)
T ss_pred HHHhCCCC
Confidence 55544433
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.71 E-value=4.4e-16 Score=151.18 Aligned_cols=281 Identities=13% Similarity=0.096 Sum_probs=167.6
Q ss_pred EEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh---hc
Q 014801 79 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KN 155 (418)
Q Consensus 79 v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (418)
..+-+|||||.+|+-.+...+..++ ++|+++|..+|..|+.+.++..+. +..+..++++.+...+...+ .+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 3333699999998877777766554 799999999999999999987652 25688888887766555543 45
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC----CHHH-HHHHHhhCCCCccEEEEEecCCccHHHH
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD----MRRD-VQEIFKMTPHDKQVMMFSATLSKEIRPV 230 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~----~~~~-~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 230 (418)
+...|+|+|...+. ..+.++++|||||=|.-..... +... +..... ...+..+|+.|||++-+....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra-~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA-HQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH-HHcCCcEEEECCCCCHHHHHH
Confidence 76799999987775 4688999999999996543211 1222 222222 234667999999998664433
Q ss_pred HHHhcCCCeEEEEcCCcccccccceEEEEEech--------h----hHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHH
Q 014801 231 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE--------L----EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 298 (418)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~ 298 (418)
+.. +....+..... ...........+.... . -....+..+.+....+++|+|.|.+..+..+.
T Consensus 311 ~~~--g~~~~~~~~~~-~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~-- 385 (665)
T PRK14873 311 VES--GWAHDLVAPRP-VVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLA-- 385 (665)
T ss_pred Hhc--Ccceeeccccc-cccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeE--
Confidence 321 11110000000 0000000011111100 0 01123334444444459999999988766542
Q ss_pred HHhCCCCe------------------EEecCCCC--------------------------------------HHHHHHHH
Q 014801 299 LVECNFPS------------------ICIHSGMS--------------------------------------QEERLTRY 322 (418)
Q Consensus 299 L~~~~~~~------------------~~~~~~~~--------------------------------------~~~r~~~~ 322 (418)
+.++|..+ .|++++.. ..++..++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l 465 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVV 465 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHH
Confidence 22222111 11111100 11233456
Q ss_pred HhhhcCCccEEEEec----ccccCCCCCCCCEEEEecCCC------------ChhhhhhhcccccCCCCceeEEEEec
Q 014801 323 KGFKEGNKRILVATD----LVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 323 ~~f~~g~~~vlv~t~----~l~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
+.|. ++.+|||+|+ ++. | +.+.|++++... ....+.|..||+||.+.+|.+++...
T Consensus 466 ~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 466 DTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred Hhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 6675 5899999998 665 3 567776655432 34556899999999988999998754
No 150
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=147.09 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=102.4
Q ss_pred HHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC--ccEEEEecccccCCC
Q 014801 269 KLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN--KRILVATDLVGRGID 344 (418)
Q Consensus 269 ~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~t~~l~~G~d 344 (418)
.|..+++.+ .++++|||..-......+...|.-+|+..+.+.|...-++|...++.|+.+. +..|++|...+.|||
T Consensus 1264 tLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiN 1343 (1958)
T KOG0391|consen 1264 TLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGIN 1343 (1958)
T ss_pred HHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccc
Confidence 344444433 5689999999999999999999999999999999999999999999998654 356678999999999
Q ss_pred CCCCCEEEEecCCCChhhhhhhcccccCCCCceeE--EEEecCC-CcHHHHHH
Q 014801 345 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA-SDSDILNQ 394 (418)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~-~~~~~~~~ 394 (418)
+-+++.||+||..|++..-.|.--|+.|.|+...+ |-+++.. -+.+++++
T Consensus 1344 LtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1344 LTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred cccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhh
Confidence 99999999999999999999999999998877544 4455533 23344443
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.69 E-value=6.9e-14 Score=138.49 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhh----cCCccEEEEecccccCCCCCC--CCEE
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER--VNIV 351 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~t~~l~~G~d~~~--~~~v 351 (418)
++.++|++++.+..+.++..|... +..+ ...+. ..+..+++.|+ .++-.||++|+.+++|+|+|+ +++|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 455899999999999999998743 3333 33443 24566776665 467779999999999999997 7888
Q ss_pred EEecCCC----C--------------------------hhhhhhhcccccCCCCceeEEEEecCC-CcHHHHHHHHHHhc
Q 014801 352 INYDMPD----S--------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 400 (418)
Q Consensus 352 i~~~~~~----s--------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 400 (418)
|+...|. + ...+.|.+||+.|......++++++.. ....+-+.+.+.+.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 8887664 1 123579999999987776677777754 33444455555443
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.5e-15 Score=146.01 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=100.5
Q ss_pred EEechhhHHHHHHHHH-hhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEe
Q 014801 259 IKLSELEKNRKLNDLL-DAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 336 (418)
Q Consensus 259 ~~~~~~~~~~~l~~~~-~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t 336 (418)
+......+...+.+-+ ..+ .+.++||-+.+++..+.+++.|.+.|++..++++.....+...+-++=+.| .|-|||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIAT 683 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIAT 683 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEec
Confidence 3334444544444333 332 678999999999999999999999999999999876655555554444444 488999
Q ss_pred cccccCCCCC--------CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 337 DLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 337 ~~l~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
+++++|.|+. +==+||-...+.|..--.|..||+||.|.+|.+..|++-+|+.
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 9999999986 2237888888999999999999999999999999999966655
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=2.4e-16 Score=151.42 Aligned_cols=341 Identities=17% Similarity=0.211 Sum_probs=215.5
Q ss_pred CCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 58 EHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
.++.+||...+..+.+ +-+.+++..+|-|||...+..+...+.. ...+ ..+||||+..|.+ |..+|..++
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~G-P~LvivPlstL~N-W~~Ef~kWa--- 467 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQG-PFLIIVPLSTLVN-WSSEFPKWA--- 467 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCC-CeEEeccccccCC-chhhccccc---
Confidence 3799999999988776 3468999999999996544333333222 1223 4799999988877 888777765
Q ss_pred CCceEEEEEcCcchH-HHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC
Q 014801 133 PDIKVAVFYGGVNIK-IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 211 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~ 211 (418)
|.+......|..... ........+..+|+++|++.+.. .+..+.--++.++||||-|.+.+.. ..+...+....
T Consensus 468 PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~---~KLt~~L~t~y 542 (1157)
T KOG0386|consen 468 PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI---CKLTDTLNTHY 542 (1157)
T ss_pred cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh---hHHHHHhhccc
Confidence 567777777753321 11222334678999999999875 1111111234579999999997632 23333333222
Q ss_pred CCccEEEEEecCCcc---------------H---HHHHHHhcCCCeEEE-------------------------------
Q 014801 212 HDKQVMMFSATLSKE---------------I---RPVCKKFMQDPMEIY------------------------------- 242 (418)
Q Consensus 212 ~~~~~i~lSAT~~~~---------------~---~~~~~~~~~~~~~~~------------------------------- 242 (418)
.....+++|+|+--+ + ...+..|++.|+...
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 334457777775110 0 000011111110000
Q ss_pred -------------------------------------EcC-Ccccccc--------------------cceEEE---EE-
Q 014801 243 -------------------------------------VDD-EAKLTLH--------------------GLVQHY---IK- 260 (418)
Q Consensus 243 -------------------------------------~~~-~~~~~~~--------------------~~~~~~---~~- 260 (418)
.+. ......+ .+...+ ..
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 000 0000000 000000 00
Q ss_pred ---echhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCc---cE
Q 014801 261 ---LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RI 332 (418)
Q Consensus 261 ---~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~v 332 (418)
.....+.+.+..++.++ .+++++.||.--.....+..+|.-.++....+.|....++|...++.|+.-+. .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01223556677777665 56899999999999999999998888999999999999999999999986432 46
Q ss_pred EEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC---cHHHHHHHHHHhccCccccCc
Q 014801 333 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS---DSDILNQVQARFEVDIKELPE 408 (418)
Q Consensus 333 lv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 408 (418)
|++|...+.|+|+..++.||+|+..|++....|+..||.|.|+...|-++.-..- +..++..-...++.+=+.+..
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 6799999999999999999999999999999999999999998866655443222 223333333444444444443
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.68 E-value=1.5e-15 Score=140.91 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=99.7
Q ss_pred HHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCcc-EEEEecccccCC
Q 014801 267 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR-ILVATDLVGRGI 343 (418)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~t~~l~~G~ 343 (418)
...|.+++..+ .++++|+|++--+....+.++|.-.+++...+.|+....+|..+.+.|+..++- +|++|.+.+.||
T Consensus 1030 L~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred eeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 33455555544 567999999999999999999999999999999999999999999999987764 556899999999
Q ss_pred CCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEE
Q 014801 344 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 380 (418)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~ 380 (418)
|+..++.||+|+..|++..-.|.+.||.|.|+...+.
T Consensus 1110 NLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred cccccceEEEecCCCCcchhhHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999886543
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.66 E-value=8.6e-15 Score=144.01 Aligned_cols=310 Identities=18% Similarity=0.164 Sum_probs=176.9
Q ss_pred CCcHHHHHhHHhhhc--------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 59 HPSEVQHECIPQAIL--------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~--------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.-+.||-+|++.+.. |--++-.|.||+|||++ -.-+|..+.....+.+..+..-.+.|.-|+-+.+++-.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 346799999988775 11266789999999986 556666666666666778888888888887777765432
Q ss_pred cCCCceEEEEEcCcchHH-------------------------------------------HHHHhhc-------CCCcE
Q 014801 131 YLPDIKVAVFYGGVNIKI-------------------------------------------HKDLLKN-------ECPQI 160 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~-------~~~~i 160 (418)
.. +-...++.|+..... ....+.+ -...+
T Consensus 487 L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 487 LS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 22 223333333321110 0000100 11479
Q ss_pred EEeccHHHHHHHhcC---CCCCC----CccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccHHHHHH
Q 014801 161 VVGTPGRILALARDK---DLSLK----NVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 161 ~v~T~~~l~~~~~~~---~~~~~----~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~ 232 (418)
+|||+++++...... ...+. .-+.|||||+|.+.. ..+ ..+.+++... ..+.++++||||+|+.....+.
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 999999998765321 11111 135699999997754 222 2233333211 1246789999999987554332
Q ss_pred H-----------hcCCC---e--EEEEcCCcccc----------------------------cccceEEEEEechhh---
Q 014801 233 K-----------FMQDP---M--EIYVDDEAKLT----------------------------LHGLVQHYIKLSELE--- 265 (418)
Q Consensus 233 ~-----------~~~~~---~--~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~--- 265 (418)
. ..+.+ . .+....+.... ...-.-....++...
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 2 22221 1 11110000000 000011111222111
Q ss_pred --HHHHHHHHH-----hhc-------C-CC-e---EEEEeCCchhHHHHHHHHHhCC------CCeEEecCCCCHHHHHH
Q 014801 266 --KNRKLNDLL-----DAL-------D-FN-Q---VVIFVKSVSRAAELNKLLVECN------FPSICIHSGMSQEERLT 320 (418)
Q Consensus 266 --~~~~l~~~~-----~~~-------~-~~-~---~lif~~~~~~~~~~~~~L~~~~------~~~~~~~~~~~~~~r~~ 320 (418)
....+...+ ..+ + .+ + .+|-+++++.+..+++.|.... +...+||+...-..|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 111111111 111 1 22 2 4788899999888888887542 34677899887777766
Q ss_pred HHHhh----------------------hc----CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCC
Q 014801 321 RYKGF----------------------KE----GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 374 (418)
Q Consensus 321 ~~~~f----------------------~~----g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 374 (418)
+++.. .+ +...|+|+|++++.|+|+ +.+.+|. .+.+..+.+|++||+.|.+
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 65442 11 466899999999999997 3666654 3567889999999999976
Q ss_pred C
Q 014801 375 T 375 (418)
Q Consensus 375 ~ 375 (418)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 4
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1e-13 Score=138.46 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=61.6
Q ss_pred CCCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 57 FEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
+..++|.|.+.+..+.+ ++++++.+|||+|||++.+.+++......+...++++.+.|.+-..|..+++++..
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 55669999888877654 78899999999999999999999887655544589999999999999999998853
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.64 E-value=3.4e-14 Score=136.37 Aligned_cols=289 Identities=13% Similarity=0.207 Sum_probs=182.2
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
-.+|.+|+|+|||.+..-++...+.. +.. +++++..+++|+.+..+.++...-. ++.. ....... .+..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~-~~~-~VLvVShRrSL~~sL~~rf~~~~l~--gFv~--Y~d~~~~-----~i~~ 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN-PDK-SVLVVSHRRSLTKSLAERFKKAGLS--GFVN--YLDSDDY-----IIDG 119 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC-CCC-eEEEEEhHHHHHHHHHHHHhhcCCC--ccee--eeccccc-----cccc
Confidence 37899999999998765554444432 222 7999999999999999888764211 2221 1111111 1111
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHH-------HHHHhhCCCCccEEEEEecCCccHH
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV-------QEIFKMTPHDKQVMMFSATLSKEIR 228 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~-------~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (418)
...+-+++..+.+.++.. -.+.++++||+||+-..... -+...+ ..+...+.....+|++-|++.....
T Consensus 120 ~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 124677888888876532 24667999999999988763 233222 2233445566789999999999988
Q ss_pred HHHHHhcCCCeEEEEcCC-cccccccceEEEEEe----------------------------------chhhHHHHHHHH
Q 014801 229 PVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKL----------------------------------SELEKNRKLNDL 273 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~~~ 273 (418)
++++....+.....+... .......-...+... ...........+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 888887655433322211 110010000000000 001122344444
Q ss_pred Hhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC--CE
Q 014801 274 LDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV--NI 350 (418)
Q Consensus 274 ~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~--~~ 350 (418)
...+ .++++-||+.+...++.+++........+..+++.-+..+-+ .| ++++|++-|+++..|+++-.. +.
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~W--~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----SW--KKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----cc--cceeEEEEeceEEEEeccchhhceE
Confidence 4444 456788899999999999999998888888888876655322 22 578999999999999998653 44
Q ss_pred EEEecCC----CChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 351 VINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 351 vi~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
++.|-.| .+..+..|++||+... .....+++++..
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 5545333 2455689999999554 456777777744
No 158
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.64 E-value=6.9e-14 Score=142.02 Aligned_cols=297 Identities=18% Similarity=0.176 Sum_probs=168.9
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 154 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (418)
+..+||..+|||||++.+. +...+......+++++|+.++.|-.|+.++|..+........ ...+.+...+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHHHHHh
Confidence 4599999999999988554 444444346667999999999999999999998865431111 4445566666666
Q ss_pred cCCCcEEEeccHHHHHHHhcCC-C-CCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHH-H
Q 014801 155 NECPQIVVGTPGRILALARDKD-L-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV-C 231 (418)
Q Consensus 155 ~~~~~i~v~T~~~l~~~~~~~~-~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~-~ 231 (418)
.....|+|||.++|........ . .-.+--++|+||||+--. +. .-..+...++ +...+++|+||--.-... -
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~--~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GE--LAKLLKKALK-KAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cH--HHHHHHHHhc-cceEEEeeCCccccccccch
Confidence 6656999999999988765541 1 122334699999996432 22 2222233333 366999999985332211 1
Q ss_pred HHhcCCCeEEEEcCCcccccccceEEEEEe-c----h---hh-------H------------------------------
Q 014801 232 KKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-S----E---LE-------K------------------------------ 266 (418)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~---~~-------~------------------------------ 266 (418)
...+++....+.....-.....+...|... . . .. .
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 223333333332221111111111111100 0 0 00 0
Q ss_pred ---HHHHHHHHh-hcCCCeEEEEeCCchhHHHHHHHHHhCCC---------CeE-Ee-------------cCCCCHHHHH
Q 014801 267 ---NRKLNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNF---------PSI-CI-------------HSGMSQEERL 319 (418)
Q Consensus 267 ---~~~l~~~~~-~~~~~~~lif~~~~~~~~~~~~~L~~~~~---------~~~-~~-------------~~~~~~~~r~ 319 (418)
......+.. ...+.++++.+.++..+..+.+....... ... .+ |.. ....+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHh
Confidence 000111111 12346788888888844444433322100 000 00 111 112222
Q ss_pred HHHHh--hhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC--C-Cc-eeEEEEec
Q 014801 320 TRYKG--FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--G-TK-GLAITFVS 384 (418)
Q Consensus 320 ~~~~~--f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~-~~-g~~~~~~~ 384 (418)
..... ..+...++||.++++-+|+|.|.++++..-. |.-...++|.+.|+.|. + .+ |.++.|.+
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK-~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK-PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc-ccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 23333 3456789999999999999999888887754 45577899999999994 3 23 55555554
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=2.4e-15 Score=107.58 Aligned_cols=81 Identities=46% Similarity=0.762 Sum_probs=76.6
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC
Q 014801 294 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 373 (418)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (418)
.+.+.|...++.+..+|++++..+|..+++.|+++..+++|+|+++++|+|+|.+++||+++.+++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 014801 374 G 374 (418)
Q Consensus 374 ~ 374 (418)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.50 E-value=8.5e-13 Score=126.42 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----------------------CCCeEEecCCCCHHHHHHHHHhhhcCC---c-c
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGN---K-R 331 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~---~-~ 331 (418)
-+.++|||.++......|..+|... |.....+.|..+...|..+.+.|++-. . -
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 4579999999999999888888642 234455678888999999999998532 2 3
Q ss_pred EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEE
Q 014801 332 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 382 (418)
Q Consensus 332 vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 382 (418)
.||+|.+.+.|+|+-.++-||+|+..|++.--.|.+=|+.|.||...||+|
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 688999999999999999999999999999999999999999999998875
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=3.7e-12 Score=132.29 Aligned_cols=316 Identities=17% Similarity=0.209 Sum_probs=199.5
Q ss_pred CCCcHHHHHhHHhhhc-----CCcEEEEccCCCchhhHHHHHhhhccCCCCC-CeeEEEecCcHHHHHHHHHHHHHHhcc
Q 014801 58 EHPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPG-QVTALVLCHTRELAYQICHEFERFSTY 131 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~-----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~-~~~~lii~P~~~l~~q~~~~~~~~~~~ 131 (418)
..++++|.+.++.+.. +.+.+++.++|.|||...+..+......... .+..++++|+ +++.+|.+++.++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~- 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP- 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc-
Confidence 4689999999987662 6778999999999997665555442222222 2368999995 677889999988764
Q ss_pred CCCce-EEEEEcCcch----HHHHHHhhcC----CCcEEEeccHHHHHHH-hcCCCCCCCccEEEEechhhhccCCCCHH
Q 014801 132 LPDIK-VAVFYGGVNI----KIHKDLLKNE----CPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDMRR 201 (418)
Q Consensus 132 ~~~~~-~~~~~~~~~~----~~~~~~~~~~----~~~i~v~T~~~l~~~~-~~~~~~~~~~~~iViDE~h~~~~~~~~~~ 201 (418)
..+ +...+|.... ......+... ..+++++|++.+.... ....+.-..+..+|+||+|.+.+. -..
T Consensus 415 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~--~s~ 490 (866)
T COG0553 415 --DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND--QSS 490 (866)
T ss_pred --cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh--hhH
Confidence 444 6677776541 2222222221 1589999999998731 122233446778999999998763 222
Q ss_pred HHHHHHhhCCCCccEEEEEecCCc-cHH---HHHH----------------HhcCCCe----------------------
Q 014801 202 DVQEIFKMTPHDKQVMMFSATLSK-EIR---PVCK----------------KFMQDPM---------------------- 239 (418)
Q Consensus 202 ~~~~~~~~~~~~~~~i~lSAT~~~-~~~---~~~~----------------~~~~~~~---------------------- 239 (418)
....+. .+.. ...+.+|+||-. .+. .+.. .++..+.
T Consensus 491 ~~~~l~-~~~~-~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 491 EGKALQ-FLKA-LNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHH-HHhh-cceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 222222 1111 113666666510 000 0000 0000000
Q ss_pred -----------E--EE--------------------------Ec-------------CCc---------c-------ccc
Q 014801 240 -----------E--IY--------------------------VD-------------DEA---------K-------LTL 251 (418)
Q Consensus 240 -----------~--~~--------------------------~~-------------~~~---------~-------~~~ 251 (418)
. +. .. ... . ...
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0 00 00 000 0 000
Q ss_pred ccceEE---EEE-----e---------------------chh-hHHHHHHHHH-hh--cCCC--eEEEEeCCchhHHHHH
Q 014801 252 HGLVQH---YIK-----L---------------------SEL-EKNRKLNDLL-DA--LDFN--QVVIFVKSVSRAAELN 296 (418)
Q Consensus 252 ~~~~~~---~~~-----~---------------------~~~-~~~~~l~~~~-~~--~~~~--~~lif~~~~~~~~~~~ 296 (418)
+.+..+ +.. . ... .+...+.+++ .. ..+. ++++|++.......+.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 000000 000 0 000 3445555555 22 2445 8999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC-Cc-cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCC
Q 014801 297 KLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NK-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 374 (418)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~-~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 374 (418)
..|...++....++|+++...|...++.|.++ +. -+++++.+.+.|+|+..+++||++++.|++....|...|+.|.|
T Consensus 729 ~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 99999888899999999999999999999986 33 45557789999999999999999999999999999999999999
Q ss_pred CceeEEE
Q 014801 375 TKGLAIT 381 (418)
Q Consensus 375 ~~g~~~~ 381 (418)
++..+.+
T Consensus 809 Q~~~v~v 815 (866)
T COG0553 809 QKRPVKV 815 (866)
T ss_pred CcceeEE
Confidence 8866554
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.45 E-value=4.2e-12 Score=122.96 Aligned_cols=315 Identities=19% Similarity=0.250 Sum_probs=194.3
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 140 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 140 (418)
+++=-+.+..+.-+...+..+-||-|||+++.+++.-....+. .+.+++...-|+.--++++..+...+ |+.+++.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~ 155 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFL-GLSVGVI 155 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHc-CCceeec
Confidence 4444444555666677899999999999999888876666555 57888888899988888888888887 9999999
Q ss_pred EcCcchHHHHHHhhcCCCcEEEeccHHHH-HHHhc------CCCCCCCccEEEEechhhhccC---------------CC
Q 014801 141 YGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARD------KDLSLKNVRHFILDECDKMLES---------------LD 198 (418)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~-~~~~~------~~~~~~~~~~iViDE~h~~~~~---------------~~ 198 (418)
..+....++...+. .||.++|-.-|- ..++. .......+.+-|+||++.+.=+ ..
T Consensus 156 ~~~m~~~ek~~aY~---~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 156 LAGMSPEEKRAAYA---CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred cCCCChHHHHHHHh---cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 98888777777666 389999987652 11111 1222446788999999976411 01
Q ss_pred CHHHHHHHHhhCCCC--------c--------------------------------------------------------
Q 014801 199 MRRDVQEIFKMTPHD--------K-------------------------------------------------------- 214 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~--------~-------------------------------------------------------- 214 (418)
....+..+...+... .
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 111122221111100 0
Q ss_pred -----------------------------------------------------cEEEEEecCCccHHHHHHHhcCCCeEE
Q 014801 215 -----------------------------------------------------QVMMFSATLSKEIRPVCKKFMQDPMEI 241 (418)
Q Consensus 215 -----------------------------------------------------~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (418)
++.+||+|...+...+..-+..+ .+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~--vv 390 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD--VV 390 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc--ee
Confidence 11222222221111111111111 01
Q ss_pred EEcCCcccccccceEEEEEechhhHHHH-HHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 014801 242 YVDDEAKLTLHGLVQHYIKLSELEKNRK-LNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 319 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~ 319 (418)
.+ +........-....+..+...+... +.++...+ .+.++||-..+++..+.+.+.|.+.+++..++++.....+-.
T Consensus 391 ~i-PTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 391 VI-PTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred ec-cCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 11 1111111111112222233334333 33333333 678999999999999999999999999999999887655555
Q ss_pred HHHHhhhcCCccEEEEecccccCCCCCCCC-----------EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 320 TRYKGFKEGNKRILVATDLVGRGIDIERVN-----------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 320 ~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
.+-.+-+.|. |-|+|+++++|-|+.--. +||-...-.|-.--.|..||+||+|.+|.+-.|++-.+
T Consensus 470 Iia~AG~~ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQAGQPGA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhhcCCCCc--cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 5544444443 678999999999985322 34444444455555699999999999999988888443
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.40 E-value=6.2e-10 Score=102.04 Aligned_cols=231 Identities=17% Similarity=0.214 Sum_probs=162.7
Q ss_pred CcEEEeccHHHHHHHhc------CCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC--------------------
Q 014801 158 PQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-------------------- 211 (418)
Q Consensus 158 ~~i~v~T~~~l~~~~~~------~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-------------------- 211 (418)
+||+|++|=.|...+.. ..-.++++.++|+|.+|.+.- .+ |..+..++..+.
T Consensus 132 SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QN-W~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 132 SDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QN-WEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred CCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hh-HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 69999999988877664 222388999999999998863 23 334444443332
Q ss_pred ----CCccEEEEEecCCccHHHHHHHhcCCCe-EEEEcCC------cccccccceEEEEEechhh-------HHHH----
Q 014801 212 ----HDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDE------AKLTLHGLVQHYIKLSELE-------KNRK---- 269 (418)
Q Consensus 212 ----~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~-------~~~~---- 269 (418)
.-.|.+++|+...++...+....+.+.. .+..... .......+.+.+...+... +...
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 2249999999999998888887555432 2221111 1123334455555433211 1111
Q ss_pred -HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccc--ccCCCCC
Q 014801 270 -LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV--GRGIDIE 346 (418)
Q Consensus 270 -l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l--~~G~d~~ 346 (418)
+-.+.+....+.+|||+++.=....+..+|++.++....++...+..+-...-..|.+|+.++|+.|+-+ -+-..+.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 1122213455789999999999999999999999999999998899998888899999999999999754 3566778
Q ss_pred CCCEEEEecCCCChhhhhhhcccccCCCC------ceeEEEEecCCCcHH
Q 014801 347 RVNIVINYDMPDSADTYLHRVGRAGRFGT------KGLAITFVSSASDSD 390 (418)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~ 390 (418)
++.+||+|++|..+.-|...++-.+.... ...|.++++.-|...
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 89999999999999999888866655433 467888888554443
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=1.9e-12 Score=98.55 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=78.8
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 152 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (418)
+|+-.+|-..+|+|||.-.+..++......+. ++|++.||+.++.++.+.++. ..+..-..... .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~~-------~~~~~~t~~~~-~----- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALKG-------LPVRFHTNARM-R----- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTT-------SSEEEESTTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHhc-------CCcccCceeee-c-----
Confidence 35567889999999998666655554332222 899999999999988776643 23222211111 0
Q ss_pred hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH-HHHHHHHhhCCCCccEEEEEecCCccH
Q 014801 153 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSATLSKEI 227 (418)
Q Consensus 153 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-~~~~~~~~~~~~~~~~i~lSAT~~~~~ 227 (418)
...+..-|-++|+..+...+.+ .....++++||+||||-.... +.. ..+..-+... ....+|+||||+|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~-sIA~rg~l~~~~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPT-SIAARGYLRELAES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHH-HHHHHHHHHHHHHT-TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHH-HHhhheeHHHhhhc-cCeeEEEEeCCCCCCC
Confidence 1123357889999998876655 445789999999999965431 111 1111222222 2357999999998753
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.39 E-value=2.5e-12 Score=116.27 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=92.2
Q ss_pred HHHHhHHhhhc-------------CCcEEEEccCCCchhhHHHHHhhhccCCCC--CCeeEEEecCcHHHHHHHHHHHHH
Q 014801 63 VQHECIPQAIL-------------GMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 63 ~Q~~~~~~~~~-------------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
||.+++..++. .+.++++.++|+|||..++..+........ ....+||+||. ++..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 57777776633 356899999999999877655543222221 11259999998 888999999999
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHH--------HHHhcCCCCCCCccEEEEechhhhccCCCC
Q 014801 128 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL--------ALARDKDLSLKNVRHFILDECDKMLESLDM 199 (418)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~--------~~~~~~~~~~~~~~~iViDE~h~~~~~~~~ 199 (418)
+.... ..++..+.|......... ......+++++|++.+. ..+.. -++++||+||+|.+.+ ..
T Consensus 80 ~~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~--~~ 150 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDSERRRLSK-NQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKN--KD 150 (299)
T ss_dssp HSGT--TS-EEEESSSCHHHHTTS-SSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTT--TT
T ss_pred ccccc-cccccccccccccccccc-cccccceeeecccccccccccccccccccc-----ccceeEEEeccccccc--cc
Confidence 97543 567777776651111111 11234699999999998 22222 2478899999999854 22
Q ss_pred HHHHHHHHhhCCCCccEEEEEecCCcc
Q 014801 200 RRDVQEIFKMTPHDKQVMMFSATLSKE 226 (418)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~ 226 (418)
......+.. +. ....+++||||..+
T Consensus 151 s~~~~~l~~-l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 151 SKRYKALRK-LR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp SHHHHHHHC-CC-ECEEEEE-SS-SSS
T ss_pred ccccccccc-cc-cceEEeeccccccc
Confidence 333444333 43 56689999998543
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.21 E-value=4.4e-09 Score=104.70 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=62.4
Q ss_pred CccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCC--Cc-------eeEEEEecCCCcHHHHHHHHHHh
Q 014801 329 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG--TK-------GLAITFVSSASDSDILNQVQARF 399 (418)
Q Consensus 329 ~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~-------g~~~~~~~~~~~~~~~~~~~~~~ 399 (418)
..+.+++.++|.+|||.|++-+++.+....|...-.|.+||+.|.- +. .....++.......+...|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999941 11 22456666677888999999988
Q ss_pred ccCc
Q 014801 400 EVDI 403 (418)
Q Consensus 400 ~~~~ 403 (418)
+.+.
T Consensus 581 ~~~~ 584 (986)
T PRK15483 581 NSDS 584 (986)
T ss_pred Hhhc
Confidence 7664
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.14 E-value=5.9e-10 Score=98.89 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCcHHHHHhHHh----hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC---CeeEEEecCcHHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQ----AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 59 ~l~~~Q~~~~~~----~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~---~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+++|.|.+.+.. +..++++++.+|||+|||++++++++..+..... +.+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995554 4458899999999999999999999866543332 237999999999988887777654
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.14 E-value=5.9e-10 Score=98.89 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCcHHHHHhHHh----hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC---CeeEEEecCcHHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQ----AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 59 ~l~~~Q~~~~~~----~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~---~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+++|.|.+.+.. +..++++++.+|||+|||++++++++..+..... +.+++|.++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995554 4458899999999999999999999866543332 237999999999988887777654
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.12 E-value=1.2e-08 Score=96.64 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=87.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCC------------------eEEecCCCCHHHHHHHHHhhhcCC---ccEEEEec
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFP------------------SICIHSGMSQEERLTRYKGFKEGN---KRILVATD 337 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~------------------~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~t~ 337 (418)
+.++|||..+......+.+.|.+..++ ...+.|..+..+|+..++.|+..- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 357899999999999998888764221 223456778889999999998532 24667899
Q ss_pred ccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEec
Q 014801 338 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 338 ~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
....|+|+-..+-+++++.-|++..-.|.+-|+.|-|++..|+++=.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999999999999999999999999999999999988887654
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=8.7e-09 Score=93.72 Aligned_cols=331 Identities=16% Similarity=0.172 Sum_probs=195.1
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEE-EccCCCch--hhHHHHHhhhccC----------------------------CCCC
Q 014801 56 GFEHPSEVQHECIPQAILGMDVIC-QAKSGMGK--TAVFVLSTLQQTE----------------------------PNPG 104 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v-~~~tGsGK--T~~~~l~~~~~~~----------------------------~~~~ 104 (418)
.-..+++.|.+.+..+.+-++++. ....+.|+ +.+|++.+++++. ++-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 345799999999999888888654 33334455 4566666665531 1123
Q ss_pred CeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEE---------EE---------------------cCc--------ch
Q 014801 105 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV---------FY---------------------GGV--------NI 146 (418)
Q Consensus 105 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~---------~~---------------------~~~--------~~ 146 (418)
.|+|||+||+++-|-.+...+..+..+...-+..+ +. |+. .+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 57999999999999888877776632221100000 11 110 00
Q ss_pred HHHHHHhhc--CCCcEEEeccHHHHHHHhcCC------CCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCc----
Q 014801 147 KIHKDLLKN--ECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK---- 214 (418)
Q Consensus 147 ~~~~~~~~~--~~~~i~v~T~~~l~~~~~~~~------~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~---- 214 (418)
....-.+.. ..+||+||+|=-|.-++.+.+ -.++++.++|||-+|.+.- .+ |..+..++..+...+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QN-wEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QN-WEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hh-HHHHHHHHHHhhcCccccc
Confidence 011111111 236999999988877776322 2377899999999998885 34 444555554443221
Q ss_pred --------------------cEEEEEecCCccHHHHHHHhcCCCeEEEEc-----C-Ccc---cccccceEEEEEec---
Q 014801 215 --------------------QVMMFSATLSKEIRPVCKKFMQDPMEIYVD-----D-EAK---LTLHGLVQHYIKLS--- 262 (418)
Q Consensus 215 --------------------~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~-----~-~~~---~~~~~~~~~~~~~~--- 262 (418)
|.+++|+--.+....++..++.+..-.... . ... ..+....+.+...+
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 444444444444444444444332111100 0 000 01111111111111
Q ss_pred -hhhHH-HHHHHHHhhc---CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec
Q 014801 263 -ELEKN-RKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 337 (418)
Q Consensus 263 -~~~~~-~~l~~~~~~~---~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 337 (418)
...+. -.+..++... ....+||+.|+.-....+..++++..+....++...+...-.+.-+.|..|...|++-|.
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 11111 1222232222 224689999999999999999999888888787666666666667789999999999997
Q ss_pred cc--ccCCCCCCCCEEEEecCCCChhhh---hhhcccccCCC----CceeEEEEecCCCc
Q 014801 338 LV--GRGIDIERVNIVINYDMPDSADTY---LHRVGRAGRFG----TKGLAITFVSSASD 388 (418)
Q Consensus 338 ~l--~~G~d~~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~~----~~g~~~~~~~~~~~ 388 (418)
-+ -+-.++.++..||+|.+|.++.-| +.|.+|..-.| ....|.++++.-+.
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 54 467788899999999999998766 45556654333 22556666664433
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=1.1e-08 Score=88.23 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=95.8
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.|++.|.-+.-.+..|+ ++...||-|||+++.+++.-....+. .|-+++.+..|+..-++++..+...+ |+.+.
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~ 150 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFL-GLSVG 150 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHT-T--EE
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHh-hhccc
Confidence 78888888876665554 99999999999988887777666554 78999999999999999999999888 99999
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHH-HHhcCC------CCCCCccEEEEechhhhc
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKD------LSLKNVRHFILDECDKML 194 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~-~~~~~~------~~~~~~~~iViDE~h~~~ 194 (418)
...++...+.+...+. .+|+++|...|.- .++..- .....+.++||||+|.+.
T Consensus 151 ~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 151 IITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999888666555554 3899999988854 344211 114678999999999876
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.98 E-value=3.4e-09 Score=101.87 Aligned_cols=309 Identities=19% Similarity=0.221 Sum_probs=181.2
Q ss_pred HHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCC--eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEc
Q 014801 65 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 142 (418)
Q Consensus 65 ~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~--~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 142 (418)
...+..+..+.-+++.+.||.|||.-+.-.++.....+... ..+.+--|++-.+..+++++.+--. -.++...|
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~----e~~g~tvg 459 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG----EEVGETCG 459 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH----Hhhccccc
Confidence 44455555677799999999999998888888887665532 2345556777666666665543211 11111111
Q ss_pred CcchHHHH-HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 143 GVNIKIHK-DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
. ..+. +.......-|+.||.+-+++...... ..+.++++||.|...-...+...+.+-..-.....+.++|||
T Consensus 460 y---~vRf~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 460 Y---NVRFDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred c---cccccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 0 1111 11111223799999999988777543 567789999999876655555554444444445556667777
Q ss_pred cCCcc--------------------HHHHHHHhcCCCeEEEEcCCcc-----------cccccceEEEE-Ee--------
Q 014801 222 TLSKE--------------------IRPVCKKFMQDPMEIYVDDEAK-----------LTLHGLVQHYI-KL-------- 261 (418)
Q Consensus 222 T~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~-------- 261 (418)
|+..+ +..++...+..+....-..... .........+- .+
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 75432 1122222211111111000000 00000000000 00
Q ss_pred -------chhh-HHHHHHHHHhh----cCCCeEEEEeCCchhHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHH
Q 014801 262 -------SELE-KNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRY 322 (418)
Q Consensus 262 -------~~~~-~~~~l~~~~~~----~~~~~~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~ 322 (418)
++.. ....+..++.. .-.+-+++|.+.+.....+..+|... .+.....|+.+...+...+.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0000 01112222221 12367899999999998888887653 35677788888888888888
Q ss_pred HhhhcCCccEEEEecccccCCCCCCCCEEEEec------------------CCCChhhhhhhcccccCCCCceeEEEEec
Q 014801 323 KGFKEGNKRILVATDLVGRGIDIERVNIVINYD------------------MPDSADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 323 ~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
+....|..++++.|.+.+..+.+.++..|+... ...|.....|+.||+||. ++|.+..+.+
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 888889999999999988888877655554222 123778899999999996 6777776665
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.94 E-value=2.6e-10 Score=111.26 Aligned_cols=258 Identities=17% Similarity=0.187 Sum_probs=157.8
Q ss_pred CCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 59 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
...|.|.+.+..... ..++++-+|||+|||.++.+++.......+.. ++++++|-++|+....+.+.+..... |+++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~-kvvyIap~kalvker~~Dw~~r~~~~-g~k~ 1004 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGS-KVVYIAPDKALVKERSDDWSKRDELP-GIKV 1004 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCc-cEEEEcCCchhhcccccchhhhcccC-Ccee
Confidence 345566666554443 56789999999999999999998888777764 89999999999999888887665444 8999
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHh--cCCCCCCCccEEEEechhhhccCCCCHHHHHHHH-------h
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR--DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-------K 208 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~-------~ 208 (418)
..+.|+...+. .... .++++|+||+++....+ ..+..+++++++|+||.|.+.. +..+.++.+. .
T Consensus 1005 ie~tgd~~pd~--~~v~--~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~--~rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1005 IELTGDVTPDV--KAVR--EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE--DRGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred EeccCccCCCh--hhee--cCceEEcccccccCccccccchhhhccccceeecccccccC--CCcceEEEEeeccccCcc
Confidence 99998876552 2222 25999999999998877 3455688999999999998876 3333322221 1
Q ss_pred hCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEE------EEec--hhhHHHHHHHHHhhcCCC
Q 014801 209 MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY------IKLS--ELEKNRKLNDLLDALDFN 280 (418)
Q Consensus 209 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~~~~~~~~~~ 280 (418)
...+..+.+++|.-+.. ..++++++...+. +...... ....+..++ ..++ .......+..+....+..
T Consensus 1079 ~t~~~vr~~glsta~~n-a~dla~wl~~~~~-~nf~~sv--rpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLSTALAN-ANDLADWLNIKDM-YNFRPSV--RPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred ccCcchhhhhHhhhhhc-cHHHHHHhCCCCc-CCCCccc--ccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 22334456666544433 3444444433332 1111110 111111111 1111 122234455555556778
Q ss_pred eEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCc
Q 014801 281 QVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNK 330 (418)
Q Consensus 281 ~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 330 (418)
+++||+.++++...-+..|... .-+...++ ++..+-..++....+...
T Consensus 1155 p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNL 1206 (1230)
T ss_pred ceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccch
Confidence 9999999988776655544321 11222232 345555555555555443
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.81 E-value=1e-06 Score=85.11 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=60.9
Q ss_pred CCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCC--CCceeEE----------EEecCCCcHHHHHHH
Q 014801 328 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--GTKGLAI----------TFVSSASDSDILNQV 395 (418)
Q Consensus 328 g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~~~g~~~----------~~~~~~~~~~~~~~~ 395 (418)
...+.+++..+|.+|||-|++-.++-+....|..+=.|-+||..|. ++.|.-+ .++.+.++..+.+.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 2333322 344557888888888
Q ss_pred HHHhccCc
Q 014801 396 QARFEVDI 403 (418)
Q Consensus 396 ~~~~~~~~ 403 (418)
++.++.+.
T Consensus 562 qkEI~~~s 569 (985)
T COG3587 562 QKEINDES 569 (985)
T ss_pred HHHHHHhh
Confidence 88776543
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.73 E-value=1.2e-07 Score=82.12 Aligned_cols=171 Identities=17% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc----------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 43 LLKPELLRAIVDSGFEHPSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 43 ~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~----------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
.+++.++.. ..|...|-+++-...+ +..+++-..||.||-....-.++....++.. +.||+.
T Consensus 27 ~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS 98 (303)
T PF13872_consen 27 HLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVS 98 (303)
T ss_pred CCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEE
Confidence 456555442 2467888888766543 2348888899999998776667776665553 689999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCC------------CC
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS------------LK 180 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~------------~~ 180 (418)
.+..|.....+.++.+... .+.+..+..- ... ....-...|+++|+..|.......... -+
T Consensus 99 ~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~-~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~d 171 (303)
T PF13872_consen 99 VSNDLKYDAERDLRDIGAD--NIPVHPLNKF-KYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGED 171 (303)
T ss_pred CChhhhhHHHHHHHHhCCC--cccceechhh-ccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcC
Confidence 9999999999999987644 3333322210 000 001112489999999987754321100 11
Q ss_pred CccEEEEechhhhccCCC-------CHHHHHHHHhhCCCCccEEEEEecCCccHHH
Q 014801 181 NVRHFILDECDKMLESLD-------MRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 229 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~-------~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (418)
.-.+||+||||...+... ....+..+.+.+++ .+++.+|||-.++.++
T Consensus 172 fdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~N 226 (303)
T PF13872_consen 172 FDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRN 226 (303)
T ss_pred CCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCce
Confidence 234799999999877422 11345556666654 5599999998776444
No 176
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.68 E-value=6.6e-08 Score=78.66 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=76.5
Q ss_pred HHhhcCCCeEEEEeCCchhHHHHHHHHHhCCC--CeEEecCCCCHHHHHHHHHhhhcCCccEEEEec--ccccCCCCCC-
Q 014801 273 LLDALDFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATD--LVGRGIDIER- 347 (418)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~--~l~~G~d~~~- 347 (418)
++...+ +.++||+++.+..+.+.+.+..... ...++.. +..+...+++.|.+++-.||+++. .+++|+|+|+
T Consensus 4 l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 4 LISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred HHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 344444 8999999999999999999876532 1222222 345778888999999889999998 9999999997
Q ss_pred -CCEEEEecCCC----Ch--------------------------hhhhhhcccccCCCCceeEEEEecCC
Q 014801 348 -VNIVINYDMPD----SA--------------------------DTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 348 -~~~vi~~~~~~----s~--------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
++.||+.+.|. ++ ....|.+||+.|..+.-.++++++..
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 77889888774 11 22469999999988887777777754
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=1.5e-07 Score=91.87 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=88.9
Q ss_pred CeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC-ccEE-EEecccccCCCCCCCCEEEEecCC
Q 014801 280 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KRIL-VATDLVGRGIDIERVNIVINYDMP 357 (418)
Q Consensus 280 ~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vl-v~t~~l~~G~d~~~~~~vi~~~~~ 357 (418)
.+++||++-..-+..+...|...+.....+.|.|+...|...+..|..+. .+|+ ++..+...|+|+-.+.+|+..++.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999888888888888888999999999999999998543 3444 466889999999999999999999
Q ss_pred CChhhhhhhcccccCCCCceeEEE
Q 014801 358 DSADTYLHRVGRAGRFGTKGLAIT 381 (418)
Q Consensus 358 ~s~~~~~Q~~GR~~R~~~~g~~~~ 381 (418)
||+....|.+-|+.|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998766654
No 178
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.56 E-value=1.3e-06 Score=87.38 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=52.6
Q ss_pred CcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc
Q 014801 158 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 158 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (418)
..|+++||..+..-+-.+.+.+..+..|||||||++.+...... +.+++....+..-+.++|+.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcc
Confidence 38999999999988888889999999999999999987444433 34445555556669999999743
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.54 E-value=4.8e-07 Score=75.73 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCcHHHHHhHHhhhcCC--cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 59 HPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~--~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
+|++-|++++..++.+. -.+|.|+.|+|||++.. .+...+...+ .++++++||...+....+.. ++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~-~~~~~~~~~g--~~v~~~apT~~Aa~~L~~~~--------~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK-ALAEALEAAG--KRVIGLAPTNKAAKELREKT--------GIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH-HHHHHHHHTT----EEEEESSHHHHHHHHHHH--------TS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH-HHHHHHHhCC--CeEEEECCcHHHHHHHHHhh--------Ccc
Confidence 47899999999997643 47788999999997533 3433333322 38999999988777654431 222
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC----CCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK----DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 212 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~ 212 (418)
. .|...++...... ...+.+.++|||||+-.+.. ..+..+......
T Consensus 70 a-------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~-----~~~~~ll~~~~~ 119 (196)
T PF13604_consen 70 A-------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS-----RQLARLLRLAKK 119 (196)
T ss_dssp E-------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH-----HHHHHHHHHS-T
T ss_pred h-------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH-----HHHHHHHHHHHh
Confidence 2 2222222211110 01155678999999997654 455566665555
Q ss_pred -CccEEEEEec
Q 014801 213 -DKQVMMFSAT 222 (418)
Q Consensus 213 -~~~~i~lSAT 222 (418)
..+++++.-+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 5566666554
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.53 E-value=3.2e-07 Score=86.00 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=69.1
Q ss_pred HHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 51 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 51 ~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.+...+..+|+..|..|+.++++..-.+|.||+|+|||.+....+...+..... ++|+++|+.--++|+++.+.+-
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~--~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAG--PVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCC--ceEEEcccchhHHHHHHHHHhc--
Confidence 444557889999999999999999999999999999998776666665555332 7999999999999999988775
Q ss_pred cCCCceEEEEEc
Q 014801 131 YLPDIKVAVFYG 142 (418)
Q Consensus 131 ~~~~~~~~~~~~ 142 (418)
++++..+..
T Consensus 478 ---gLKVvRl~a 486 (935)
T KOG1802|consen 478 ---GLKVVRLCA 486 (935)
T ss_pred ---CceEeeeeh
Confidence 666666543
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.52 E-value=1.1e-06 Score=73.47 Aligned_cols=153 Identities=22% Similarity=0.174 Sum_probs=97.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc---CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~---~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
+|+....+++++-.+.. -..+|+.|.+....+.+ +++.+...-+|.|||.+. ++++..+..++.. -+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~-LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSR-LVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCc-EEEEEcC-
Confidence 46666677777777763 34899999999999887 578999999999999875 4555555444433 5777888
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchH--H-----HHHHh--hcCCCcEEEeccHHHHHHHhc-------CCC-
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIK--I-----HKDLL--KNECPQIVVGTPGRILALARD-------KDL- 177 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~--~~~~~~i~v~T~~~l~~~~~~-------~~~- 177 (418)
++|..|....+.......-+-++..+.-+.... . -...+ ......|+++||+.+.++.-. ...
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 689999988887654443355555543221111 0 01001 112348999999988764221 110
Q ss_pred ----------CCCCccEEEEechhhhcc
Q 014801 178 ----------SLKNVRHFILDECDKMLE 195 (418)
Q Consensus 178 ----------~~~~~~~iViDE~h~~~~ 195 (418)
.++....=|+||+|.+..
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 123344478999997654
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.51 E-value=3.2e-07 Score=76.00 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=73.9
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH-------HHHHHHH-
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-------CHEFERF- 128 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~-------~~~~~~~- 128 (418)
+...+..|+.++.++...+-+++.||.|+|||+.++..+++.+..+.-. +++++-|..+..+.. .+.+.-+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3456899999999999888899999999999999988888887764433 788888876532211 0000000
Q ss_pred ---hccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHH
Q 014801 129 ---STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQE 205 (418)
Q Consensus 129 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~ 205 (418)
......+ .+... ....+.+ ..|-+.....+. . ..++ -.+||+|||+.+. ...+..
T Consensus 81 ~p~~d~l~~~-----~~~~~---~~~~~~~--~~Ie~~~~~~iR----G--rt~~-~~~iIvDEaQN~t-----~~~~k~ 138 (205)
T PF02562_consen 81 RPIYDALEEL-----FGKEK---LEELIQN--GKIEIEPLAFIR----G--RTFD-NAFIIVDEAQNLT-----PEELKM 138 (205)
T ss_dssp HHHHHHHTTT-----S-TTC---HHHHHHT--TSEEEEEGGGGT----T----B--SEEEEE-SGGG-------HHHHHH
T ss_pred HHHHHHHHHH-----hChHh---HHHHhhc--CeEEEEehhhhc----C--cccc-ceEEEEecccCCC-----HHHHHH
Confidence 0000000 01101 1111111 245555544332 1 2232 3789999999654 467888
Q ss_pred HHhhCCCCccEEEEEecC
Q 014801 206 IFKMTPHDKQVMMFSATL 223 (418)
Q Consensus 206 ~~~~~~~~~~~i~lSAT~ 223 (418)
++.+.+.+.+++++.-.-
T Consensus 139 ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHTTB-TT-EEEEEE---
T ss_pred HHcccCCCcEEEEecCce
Confidence 888888888887776553
No 183
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=6.2e-07 Score=83.30 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=85.3
Q ss_pred EEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh---hc
Q 014801 79 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KN 155 (418)
Q Consensus 79 v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (418)
..++||||||+++...++....++-+ ..|+.|...++++.+...+..-....--+.-....++...+...... .+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 35789999999888888887776665 57999998888877766553211100001111111222211111110 22
Q ss_pred CCCcEEEeccHHHHHHHhcCCCC------CCCccE-EEEechhhhccC------------CCCHHHHHHHHhhCCCCccE
Q 014801 156 ECPQIVVGTPGRILALARDKDLS------LKNVRH-FILDECDKMLES------------LDMRRDVQEIFKMTPHDKQV 216 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~------~~~~~~-iViDE~h~~~~~------------~~~~~~~~~~~~~~~~~~~~ 216 (418)
....|+++|.+.|...+.+.+.+ +.+..+ .+-||+|++-.. .+|...+....+.. ++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n-kd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN-KDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC-CCcee
Confidence 33589999999998876654432 333343 667999998642 12222233333333 33447
Q ss_pred EEEEecCCccHHHHHHHh
Q 014801 217 MMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 217 i~lSAT~~~~~~~~~~~~ 234 (418)
+..|||.+.+ ......+
T Consensus 159 lef~at~~k~-k~v~~ky 175 (812)
T COG3421 159 LEFSATIPKE-KSVEDKY 175 (812)
T ss_pred ehhhhcCCcc-ccHHHHh
Confidence 7789998843 4444443
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.30 E-value=3.9e-06 Score=78.46 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=54.0
Q ss_pred CCcHHHHHhHHhhhcCCc-EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~-~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
.+.+.|+.|+......++ .++.||+|+|||.+....+.+.+.++. ++|+.+||..-++.+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHh
Confidence 588999999999888754 789999999999987777777766654 8999999999998887754
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.27 E-value=2.2e-05 Score=67.05 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH-----------HHHHH
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY-----------QICHE 124 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~-----------q~~~~ 124 (418)
++...+..|...+..+.++.-+++.||+|+|||+.+....++.+..+. -.++++.=|..+..+ ...-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 566778999999999988888999999999999988777776553332 225555555543211 11111
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHH
Q 014801 125 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQ 204 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~ 204 (418)
++-+...+ . .+.+. ......+......|-+.....+ +.. .+ .-++||+||++.+.. ..+.
T Consensus 135 ~~pi~D~L-~----~~~~~---~~~~~~~~~~~~~Iei~~l~ym----RGr--tl-~~~~vIvDEaqn~~~-----~~~k 194 (262)
T PRK10536 135 FRPVYDVL-V----RRLGA---SFMQYCLRPEIGKVEIAPFAYM----RGR--TF-ENAVVILDEAQNVTA-----AQMK 194 (262)
T ss_pred HHHHHHHH-H----HHhCh---HHHHHHHHhccCcEEEecHHHh----cCC--cc-cCCEEEEechhcCCH-----HHHH
Confidence 11111110 0 00011 1111111111224555543333 222 23 347899999996543 6777
Q ss_pred HHHhhCCCCccEEEEEe
Q 014801 205 EIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 205 ~~~~~~~~~~~~i~lSA 221 (418)
.++...+.+.++|++.-
T Consensus 195 ~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 195 MFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHhhcCCCCEEEEeCC
Confidence 77888888776665543
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.16 E-value=1.4e-05 Score=73.71 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=65.9
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
-++|.|.+|||||++++- ++..+.......+++++++..+|.......+......
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------------ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------------ 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc------------------------
Confidence 378999999999987554 4444322222337899999999988777666543200
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC------CCCHHHHHHHHhh
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDMRRDVQEIFKM 209 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~------~~~~~~~~~~~~~ 209 (418)
......+..+..+.............+++|||||||.+... ......+..+...
T Consensus 58 ~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00122333444444333222345678999999999999762 1223455555554
No 187
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.13 E-value=8.7e-06 Score=70.63 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCcHHHHHhHHhhhcCCc-EEEEccCCCchhhHHHHHhhhcc-----CCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQT-----EPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~-~~v~~~tGsGKT~~~~l~~~~~~-----~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
+|++.|.+|+..++.... .+|+||+|+|||.+....+.... .....+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999999888 99999999999966544333331 1123334899999999999999888776
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=98.11 E-value=1e-05 Score=55.78 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=37.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccC--CCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~--~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
+.-++|.||+|+|||....-.+...+. ... +.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 334566999999999766555555542 222 448999999999999887776
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.11 E-value=3.6e-05 Score=77.22 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
-..+++.|++|+..+..++-++|.|+.|+|||.+. -.++..+........+++++||-.-+..+.+ .. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e----~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGE----VT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHH----hc----CCc
Confidence 34799999999999988888999999999999754 3333333322212368889999776654322 11 221
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-----CCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-----KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 211 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~ 211 (418)
.. |..+++..... ........++|||||++++.. ..+..++...+
T Consensus 392 a~-------------------------Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~-----~~~~~Ll~~~~ 441 (720)
T TIGR01448 392 AS-------------------------TIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT-----WLALSLLAALP 441 (720)
T ss_pred cc-------------------------cHHHHhhccCCccchhhhhccccCCEEEEeccccCCH-----HHHHHHHHhCC
Confidence 11 11111111000 001123578999999997654 34555566666
Q ss_pred CCccEEEEEec
Q 014801 212 HDKQVMMFSAT 222 (418)
Q Consensus 212 ~~~~~i~lSAT 222 (418)
...+++++.-+
T Consensus 442 ~~~rlilvGD~ 452 (720)
T TIGR01448 442 DHARLLLVGDT 452 (720)
T ss_pred CCCEEEEECcc
Confidence 77777776644
No 190
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.09 E-value=3.6e-05 Score=60.29 Aligned_cols=77 Identities=23% Similarity=0.226 Sum_probs=55.6
Q ss_pred EecCCCCHHHHHHHHHhhhcCC-ccEEEEecccccCCCCCC--CCEEEEecCCC----C---------------------
Q 014801 308 CIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIER--VNIVINYDMPD----S--------------------- 359 (418)
Q Consensus 308 ~~~~~~~~~~r~~~~~~f~~g~-~~vlv~t~~l~~G~d~~~--~~~vi~~~~~~----s--------------------- 359 (418)
++..+.+..+...+++.|.+.. ..||+++..+++|+|+|+ ++.||+.+.|. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3334445556778888887654 369999977999999998 56788777653 1
Q ss_pred ------hhhhhhhcccccCCCCceeEEEEec
Q 014801 360 ------ADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 360 ------~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
...+.|.+||+.|..+.-.++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1334699999999877766777766
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.07 E-value=3.8e-05 Score=74.85 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=83.0
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHh--hhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEE
Q 014801 62 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLST--LQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 139 (418)
Q Consensus 62 ~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~--~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 139 (418)
++|+.|+...+.++-++|.|+.|+|||++..-.+ +..........++++.+||---+..+.+.+....... ...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccc---
Confidence 7999999999999999999999999997643222 2222222112479999999877776666554432211 100
Q ss_pred EEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc------CCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCC
Q 014801 140 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 213 (418)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~ 213 (418)
.. . ... ..+-..|..+++..... ...+...+++|||||+-++.. ..+..++...+..
T Consensus 224 ------~~-~----~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~-----~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 ------EA-L----IAA-LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL-----PLMAKLLKALPPN 286 (586)
T ss_pred ------hh-h----hhc-cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-----HHHHHHHHhcCCC
Confidence 00 0 000 01223444444432111 112234678999999986543 4566667777778
Q ss_pred ccEEEEEec
Q 014801 214 KQVMMFSAT 222 (418)
Q Consensus 214 ~~~i~lSAT 222 (418)
.++|++.=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 887776644
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.04 E-value=4.4e-05 Score=74.56 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=83.7
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC--CCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~--~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.++|+.|+...+.++-++|.|++|+|||++..- ++..+.+ .....++++.+||---+..+.+.+....... +..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~-~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc-ccc--
Confidence 489999999999988999999999999976432 2222211 1122478899999887777766654432221 110
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHh------cCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCC
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR------DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 212 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~------~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~ 212 (418)
. ..... ...-..|..+++.... .+..+.-.++++||||+-++. ...+..++..++.
T Consensus 230 ---~-----~~~~~-----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ---D-----EQKKR-----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARLIDALPP 291 (615)
T ss_pred ---h-----hhhhc-----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHHHHhccc
Confidence 0 00000 0112234444432211 111123356899999998653 3566667777888
Q ss_pred CccEEEEEec
Q 014801 213 DKQVMMFSAT 222 (418)
Q Consensus 213 ~~~~i~lSAT 222 (418)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887654
No 193
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.03 E-value=3.5e-05 Score=60.51 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCC---CeEEecCCCCHHHHHHHHHhhhcCCc---cEEEEecc--cccCCCCCC--CCEEEEecCCC---
Q 014801 292 AAELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNK---RILVATDL--VGRGIDIER--VNIVINYDMPD--- 358 (418)
Q Consensus 292 ~~~~~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~t~~--l~~G~d~~~--~~~vi~~~~~~--- 358 (418)
.+.+.+.+++.+. ...++..+....+...+++.|.+..- .||+++.. +++|+|+|+ ++.||+.+.|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455555554432 12222222223344677778876433 58888865 999999998 67888877664
Q ss_pred -C---------------------------hhhhhhhcccccCCCCceeEEEEecC
Q 014801 359 -S---------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 359 -s---------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
+ ...+.|.+||+.|..+.-.++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 12246999999998877777777763
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.83 E-value=0.00013 Score=71.52 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhcc---C-----------C--------C----------
Q 014801 59 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQT---E-----------P--------N---------- 102 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~---~-----------~--------~---------- 102 (418)
+|++.|..-+..++. ..++++..|||+|||++.+...+.+. . . +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999888877775 67899999999999988775555321 0 0 0
Q ss_pred -------CCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 103 -------PGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 103 -------~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
-..+++++-.-|-.-..|+.+++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 02356777777777788888888765
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.81 E-value=4.6e-05 Score=69.33 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=75.2
Q ss_pred CcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 60 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
|++-|.+++.. ..++++|.|+.|||||.+.+..+...+... ....++++++.|+..+.++..++....... ....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~-~~~~- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEE-QQES- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC-CHCC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcc-cccc-
Confidence 57889999887 778899999999999998877666665544 344589999999999999998888765432 1000
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHH-HHhcCCCCC-CCccEEEEechh
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSL-KNVRHFILDECD 191 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~-~~~~~~~~~-~~~~~iViDE~h 191 (418)
...............+.|.|.+.+.. +++...... -.-.+-++|+..
T Consensus 77 ------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00001111111124788999888865 333211111 122446777766
No 196
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.75 E-value=6.8e-05 Score=64.70 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=37.8
Q ss_pred CCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 176 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 176 ~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
......+..+|+||||.+.. ..+..+.+..+......++++++.-+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChh
Confidence 34566789999999999986 677888888888888888888887653
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.75 E-value=7.3e-05 Score=66.08 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCCCCcHHHHHhHHhhhcCC--cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 56 GFEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~--~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
|+...+..|.-|+..++... -+.+.|..|+|||+.++.+.+.+....+.-.++++.=|+..+.+.+ ..+|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI--------GfLP 296 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI--------GFLP 296 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc--------CcCC
Confidence 67778899999999988754 3788999999999988888887766555555777777776654322 1111
Q ss_pred CceEEE---EEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCC----------ccEEEEechhhhccCCCCH
Q 014801 134 DIKVAV---FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN----------VRHFILDECDKMLESLDMR 200 (418)
Q Consensus 134 ~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~----------~~~iViDE~h~~~~~~~~~ 200 (418)
|..-.. +.+ ..-...+.+.+. -=++.+.+...+.+..+.+.. -.+||||||+.+..
T Consensus 297 G~eEeKm~PWmq--~i~DnLE~L~~~----~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp----- 365 (436)
T COG1875 297 GTEEEKMGPWMQ--AIFDNLEVLFSP----NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP----- 365 (436)
T ss_pred CchhhhccchHH--HHHhHHHHHhcc----cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-----
Confidence 111000 000 000011111111 001233444444443333221 24799999997654
Q ss_pred HHHHHHHhhCCCCccEEEEEe
Q 014801 201 RDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSA 221 (418)
..+..++.+.+...+++++.-
T Consensus 366 heikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 366 HELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred HHHHHHHHhccCCCEEEEcCC
Confidence 678888888988887776553
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.75 E-value=0.00054 Score=69.20 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=43.8
Q ss_pred CCCcHHHHHhHHhhhcC-CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 58 EHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..|++-|++|+..++.+ +-++|.|+.|+|||++.- .+...+... +.++++++||--.+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~--g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA--GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC--CCeEEEEeCcHHHHHHH
Confidence 47899999999998874 568999999999997533 333333222 23789999987655443
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.61 E-value=0.00013 Score=73.97 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=89.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCC--------------C-CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPN--------------P-GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~--------------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
|+.+++.-..|.|||...+...+....+. . ....+|||+| .++..||..++.+.... ++++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccc--cceEE
Confidence 45678889999999987665555432111 0 1125899999 58899999999988755 46888
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC--------------CCCC----cc--EEEEechhhhccCCC
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--------------SLKN----VR--HFILDECDKMLESLD 198 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--------------~~~~----~~--~iViDE~h~~~~~~~ 198 (418)
.+.|-.+......... -++||++||++.+..-+..... ...+ +. -|++||++.+....+
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 8777433221111111 2369999999999765443211 1111 11 299999998876333
Q ss_pred CHHHHHHHHhhCCCCccEEEEEecCCc
Q 014801 199 MRRDVQEIFKMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (418)
....+...+. .....++|+||-.
T Consensus 530 ~~a~M~~rL~----~in~W~VTGTPiq 552 (1394)
T KOG0298|consen 530 AAAEMVRRLH----AINRWCVTGTPIQ 552 (1394)
T ss_pred HHHHHHHHhh----hhceeeecCCchh
Confidence 3333333222 2347999999743
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.00096 Score=68.60 Aligned_cols=124 Identities=13% Similarity=0.036 Sum_probs=73.5
Q ss_pred CCCcHHHHHhHHhhhcCC-cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 58 EHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
..|++-|++|+..++.++ -++|.|+.|+|||++ +-.+...+... +.+++.++||--.+..+. .- . ++.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~----e~---t-Gi~ 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLE----GG---S-GIA 413 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHh----hc---c-Ccc
Confidence 379999999999999855 478999999999975 23333333221 237899999876554332 11 1 221
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCcc
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQ 215 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (418)
. .|..+|..-.......+...++|||||+-.+.. ..+..++... ....+
T Consensus 414 a-------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~gar 463 (988)
T PRK13889 414 S-------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAK 463 (988)
T ss_pred h-------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCE
Confidence 1 122233221122233456778999999997654 2344444322 34566
Q ss_pred EEEEEec
Q 014801 216 VMMFSAT 222 (418)
Q Consensus 216 ~i~lSAT 222 (418)
+|++.=+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 6666544
No 201
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.57 E-value=0.00026 Score=70.07 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCcHHHHHhHHhhhcC-CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 58 EHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
..+++.|++|+..++.. ...+|.||+|+|||.+..-.+...+..+. ++++++||..-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 46899999999998876 66889999999999776554544444333 799999999999998887765
No 202
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.57 E-value=0.0016 Score=67.50 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 43 LLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 43 ~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
+.++.........+ ..|++-|++++..+.. ++-++|.|+.|+|||++.- .+...+... +.+++.++||-.-+..+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~~--G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEAA--GYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHHc--CCeEEEEcCcHHHHHHH
Confidence 34454444444333 4799999999998865 4458999999999997533 333333222 22789999986655443
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHH
Q 014801 122 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 201 (418)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~ 201 (418)
.... ++... |...|..........+...++|||||+..+.. .
T Consensus 442 ----~e~~----Gi~a~-------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~-----~ 483 (1102)
T PRK13826 442 ----EKEA----GIQSR-------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS-----R 483 (1102)
T ss_pred ----HHhh----CCCee-------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH-----H
Confidence 2221 33322 22222111111223456678999999997654 3
Q ss_pred HHHHHHhhCC-CCccEEEEEec
Q 014801 202 DVQEIFKMTP-HDKQVMMFSAT 222 (418)
Q Consensus 202 ~~~~~~~~~~-~~~~~i~lSAT 222 (418)
.+..++.... ...+++++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 3444444433 35666666544
No 203
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.0011 Score=58.18 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=27.4
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..+++++++||+|+|||..+..........+ .+++++ +...|..+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFT-RTTDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcC---Cceeee-eHHHHHHHH
Confidence 3578899999999999975543333333322 144444 444555543
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.52 E-value=0.00035 Score=69.23 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCc-EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 122 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~-~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~ 122 (418)
+.|.+.+. ....|+.-|++|+-.++..++ .+|.|-+|+|||.+....+-..+..++ ++|+.+=|..-++.+.
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDNIL 730 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDNIL 730 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHHHH
Confidence 44444443 234789999999998887554 789999999999876555554444443 7899888888888876
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHhh----------------cCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 123 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK----------------NECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
-.++.+ ++.+..+-.+.......+... -+...|+.||--.+...+. ....|++.|
T Consensus 731 iKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cI 801 (1100)
T KOG1805|consen 731 IKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCI 801 (1100)
T ss_pred HHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEE
Confidence 666554 444333222211111111111 1234677777544433222 234589999
Q ss_pred Eechhhhcc
Q 014801 187 LDECDKMLE 195 (418)
Q Consensus 187 iDE~h~~~~ 195 (418)
||||-.+..
T Consensus 802 iDEASQI~l 810 (1100)
T KOG1805|consen 802 IDEASQILL 810 (1100)
T ss_pred Ecccccccc
Confidence 999997753
No 205
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.00022 Score=59.37 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=24.1
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
-.++.||+|+|||..++-.+.+....+. +++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~---~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGM---KVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCC---eEEEEec
Confidence 3688999999999776555554444332 6777766
No 206
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.0013 Score=57.34 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.7
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
+..+.+++++||+|+|||..+........
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 33567899999999999976554333333
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.41 E-value=0.0014 Score=59.52 Aligned_cols=132 Identities=14% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
++-+.+.||||.|||.+..-.+........+....||-+.+=-.+ ..++++.++.-. ++++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im-~vp~~v-------------- 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIM-GVPLEV-------------- 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHh-CCceEE--------------
Confidence 556899999999999876544444442233332345544443222 133455555444 555544
Q ss_pred hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCcc-HHHHHH
Q 014801 154 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~~~ 232 (418)
+-+|.-|...+. .+.++++|.||=+-+-..+......+..+..........+.+|||.... ...+..
T Consensus 266 --------v~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 266 --------VYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred --------ecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 334444544333 3456688999988754332333455666666665555678889997643 333444
Q ss_pred Hh
Q 014801 233 KF 234 (418)
Q Consensus 233 ~~ 234 (418)
.|
T Consensus 334 ~f 335 (407)
T COG1419 334 QF 335 (407)
T ss_pred Hh
Confidence 43
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.40 E-value=0.00041 Score=53.96 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhhHHHHHhh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTL 96 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~ 96 (418)
++.++|.|++|+|||......+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999976544333
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.001 Score=61.33 Aligned_cols=130 Identities=13% Similarity=0.175 Sum_probs=66.6
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEec-Cc-HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLC-HT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 151 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (418)
..+++.||||+|||.++.-.+....... ..+.++.++. .+ +.-+.. +++.++... ++++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~l-gvpv~~~----------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIM-GIPVKAI----------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcC-CcceEee-----------
Confidence 3488899999999987653333222111 1122444433 33 222222 244444433 5544221
Q ss_pred HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCC-ccEEEEEecCCcc-HHH
Q 014801 152 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-KQVMMFSATLSKE-IRP 229 (418)
Q Consensus 152 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~-~~~i~lSAT~~~~-~~~ 229 (418)
-+++.+...+.. +.++++|+||++............+..++...... -.++.+|||.... ...
T Consensus 240 -----------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 240 -----------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred -----------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 123444443332 35688999999997653211223445555544332 3578899998643 333
Q ss_pred HHHHh
Q 014801 230 VCKKF 234 (418)
Q Consensus 230 ~~~~~ 234 (418)
.+..+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 33443
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=97.35 E-value=0.0011 Score=59.99 Aligned_cols=130 Identities=15% Similarity=0.235 Sum_probs=71.0
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc---HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT---RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
+++.|++|+|||.+..-.+ ..+.... .+++++..- .....|+......+ ++++.....+..
T Consensus 143 i~~~G~~GvGKTTtiakLA-~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~a~~l-----gv~v~~~~~g~d-------- 206 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLA-YYLKKNG--FSVVIAAGDTFRAGAIEQLEEHAERL-----GVKVIKHKYGAD-------- 206 (336)
T ss_pred EEEEcCCCCCHHHHHHHHH-HHHHHcC--CeEEEecCCcCcHHHHHHHHHHHHHc-----CCceecccCCCC--------
Confidence 7889999999997644333 2332222 255555432 34445554433332 554432111111
Q ss_pred hcCCCcEEEeccHH-HHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHH
Q 014801 154 KNECPQIVVGTPGR-ILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~-l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (418)
|.. +...+... ...+.++|+||.++...........+..+.....+...++.++|+...+....+.
T Consensus 207 -----------p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 207 -----------PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred -----------HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 111 11111110 1135678999999987654455566677766666667788889988766555555
Q ss_pred Hhc
Q 014801 233 KFM 235 (418)
Q Consensus 233 ~~~ 235 (418)
.+.
T Consensus 274 ~f~ 276 (336)
T PRK14974 274 EFN 276 (336)
T ss_pred HHH
Confidence 543
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.34 E-value=0.00053 Score=59.57 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=55.4
Q ss_pred HHHHhhhcCCccEEEEecccccCCCCCC--------CCEEEEecCCCChhhhhhhcccccCCCCc-eeEEEEecCC
Q 014801 320 TRYKGFKEGNKRILVATDLVGRGIDIER--------VNIVINYDMPDSADTYLHRVGRAGRFGTK-GLAITFVSSA 386 (418)
Q Consensus 320 ~~~~~f~~g~~~vlv~t~~l~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~~~ 386 (418)
...+.|.+|+.+|+|.+.+.++|+.+.. -++-|.+.+|||....+|..||+.|.||. ...+.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 3456899999999999999999999873 34678899999999999999999999875 5556655544
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.26 E-value=0.0038 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
+..+++.||+|+|||..+ ..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~-~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA-RAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 567999999999999654 3333333
No 213
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.24 E-value=0.00084 Score=62.05 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=44.9
Q ss_pred CCCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhccCCCC-CCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 57 FEHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+...+|-|-+=+..+.. +.++++.+|+|+|||.+.+-.++.....-+ .-.+.++..-|..-++....+++.+
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 34567888665555443 678999999999999776655554433222 2336677666655555555555443
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=97.23 E-value=0.00095 Score=57.64 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (418)
+.+++++|++|.+.+...+...+..+++......+.+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 456899999998765444445566666655443345666666543
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0064 Score=55.61 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=66.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEe-cC-cH-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL-CH-TR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 151 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii-~P-~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (418)
+.+++.||+|+|||..+...+......+ . ++.++ +. .+ +.+.|+. .++... ++++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G--k-kVglI~aDt~RiaAvEQLk----~yae~l-gipv~v------------ 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK--K-TVGFITTDHSRIGTVQQLQ----DYVKTI-GFEVIA------------ 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC--C-cEEEEecCCcchHHHHHHH----HHhhhc-CCcEEe------------
Confidence 3578999999999976554444333222 2 34444 32 22 3444443 332222 333322
Q ss_pred HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc-cHHHH
Q 014801 152 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 230 (418)
Q Consensus 152 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~ 230 (418)
..+++.+...+..... -.++++|+||-+-...........+..+.....+...++.+|||... +....
T Consensus 302 ----------~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 302 ----------VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred ----------cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 2345555544432110 12578899999876543222233344444444444446668887654 44555
Q ss_pred HHHhc
Q 014801 231 CKKFM 235 (418)
Q Consensus 231 ~~~~~ 235 (418)
+..+.
T Consensus 371 ~~~F~ 375 (436)
T PRK11889 371 ITNFK 375 (436)
T ss_pred HHHhc
Confidence 55553
No 216
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.17 E-value=0.0004 Score=67.21 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=97.3
Q ss_pred CCCCcHHHHHhHHhhhc--------CC--cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 57 FEHPSEVQHECIPQAIL--------GM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~--------~~--~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
...+...|.+++-...+ |. .++|-...|.||-.+..-.|+....++.+ ++||+.-+..|--...+.++
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchh
Confidence 34677889888876655 22 25666566666655444455665555543 79999999999888888888
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC------------CCCCC-ccEEEEechhhh
Q 014801 127 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD------------LSLKN-VRHFILDECDKM 193 (418)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~------------~~~~~-~~~iViDE~h~~ 193 (418)
..... ++.|..+.--...+...+.-.+..-.|+++|+..|........ |.=.+ =++||+||||..
T Consensus 340 DigA~--~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 340 DIGAT--GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred hcCCC--CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 76533 5666554321111111111111223799999987764333110 11111 257999999987
Q ss_pred ccC--------CCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 194 LES--------LDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 194 ~~~--------~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
.+- .--...+..+.+.+++ .+++.-|||-.
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATGA 455 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATGA 455 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccCC
Confidence 641 2234556676676654 56999999953
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0015 Score=51.34 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+..+++.||+|+|||..+.. ++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 45789999999999976433 333333322 146777766543
No 218
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.15 E-value=0.00076 Score=67.60 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=56.0
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.|++-|++++.. ...+++|.|+.|||||.+....+...+.. +-...++|+++-|+..+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999875 35778999999999999887777776643 33344799999999999999888887643
No 219
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.12 E-value=0.049 Score=61.09 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=120.4
Q ss_pred CCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 59 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
.|++-|++++..++.. +-.+|.|+.|+|||.+. -.+...+... +.+++.++|+-.-+..+.+... +.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g--------~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ--GYEIQIITAGSLSAQELRQKIP--------RL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhc--------ch
Confidence 6889999999998875 45899999999999753 3333333322 2379999999876665544321 11
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCcc
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQ 215 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (418)
... ...+...+.. ..-..|...|. .....+...++|||||+-.+.. ..+..++... ..+.+
T Consensus 498 A~T------i~~~l~~l~~---~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 498 AST------FITWVKNLFN---DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQHNSK 559 (1960)
T ss_pred hhh------HHHHHHhhcc---cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhcCCE
Confidence 100 1111111111 11122333333 2233456788999999996644 3455555443 35677
Q ss_pred EEEEEecC--C----ccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHH-HHHHHHhhc-CCCeEEEEeC
Q 014801 216 VMMFSATL--S----KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-KLNDLLDAL-DFNQVVIFVK 287 (418)
Q Consensus 216 ~i~lSAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~lif~~ 287 (418)
+|++.=+- + ......+.... -+.. ........ +... .+.......+.. ....++... ...+.+|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~-~l~~i~rq--~~~v-~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGG-VTTY-AWVDTKQQ--KASV-EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCC-CcEE-Eeeccccc--Ccce-eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88877552 1 12222333321 1111 11111110 1111 122222222222 333333333 3345899998
Q ss_pred CchhHHHHHHHHHh----CCC------CeEEec-CCCCHHHHHHHHHhhhcCC
Q 014801 288 SVSRAAELNKLLVE----CNF------PSICIH-SGMSQEERLTRYKGFKEGN 329 (418)
Q Consensus 288 ~~~~~~~~~~~L~~----~~~------~~~~~~-~~~~~~~r~~~~~~f~~g~ 329 (418)
+.+....+....+. .|. ....+. ..++..++... ..|+.|+
T Consensus 635 t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 635 THREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred CcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 88877777665543 222 222222 35677776643 5566554
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0023 Score=58.60 Aligned_cols=132 Identities=13% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
+..+++.||||+|||......+.......+.. ++.++. +...-.--.+.++.++... ++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~~~~------------ 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLT-TDSYRIGGHEQLRIFGKIL-GVPVHAVK------------ 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEe-cccccccHHHHHHHHHHHc-CCceEecC------------
Confidence 45689999999999987654444333221111 444443 2222111223344444333 44443322
Q ss_pred hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccH-HHHHH
Q 014801 154 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI-RPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~-~~~~~ 232 (418)
++..+...+. .+.+.++|+||.+-....+......+..+.........++.+|||..... ...+.
T Consensus 202 ----------~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 202 ----------DGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----------CcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2222332222 23456889999997443211122223333222223345888999986543 33344
Q ss_pred Hh
Q 014801 233 KF 234 (418)
Q Consensus 233 ~~ 234 (418)
.|
T Consensus 268 ~f 269 (374)
T PRK14722 268 AY 269 (374)
T ss_pred HH
Confidence 44
No 221
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.05 E-value=0.0021 Score=55.22 Aligned_cols=87 Identities=30% Similarity=0.423 Sum_probs=66.9
Q ss_pred CCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCc-chHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCC
Q 014801 103 PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV-NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN 181 (418)
Q Consensus 103 ~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 181 (418)
.+.|.+|||+.+.--+-.+.+.++.+... +..+.-++.-. ..+++...+.....+|.|+||+++..+++.+.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 35678999998876677777777766311 34444444433 5667777777777899999999999999999999999
Q ss_pred ccEEEEechh
Q 014801 182 VRHFILDECD 191 (418)
Q Consensus 182 ~~~iViDE~h 191 (418)
+.+||+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999876
No 222
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.04 E-value=0.0024 Score=63.76 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC-CCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
-..|++-|++|+.. ...+++|.|+.|||||.+....+...+.... .+.++++++.++..+..+.+++...... .++
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~-~~v 270 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT-EDI 270 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-CCc
Confidence 34799999999863 3467899999999999887655544443322 2348999999999999998888765432 134
Q ss_pred eEEE
Q 014801 136 KVAV 139 (418)
Q Consensus 136 ~~~~ 139 (418)
.+..
T Consensus 271 ~v~T 274 (684)
T PRK11054 271 TART 274 (684)
T ss_pred EEEe
Confidence 4444
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.03 E-value=0.002 Score=55.76 Aligned_cols=43 Identities=2% Similarity=0.102 Sum_probs=24.1
Q ss_pred ccEEEEechhhhccCCCCHHHHHHHHhhCCC-CccEEEEEecCC
Q 014801 182 VRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLS 224 (418)
Q Consensus 182 ~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~ 224 (418)
.+++++||+|.+.....+...+..+++.... ....+.+|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 4689999999886543444445455544322 222344455543
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=97.02 E-value=0.0021 Score=55.28 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCC-CccEEEEEecCCc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSK 225 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (418)
.+.+++++||+|.+.....+...+..+++.... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 466789999999886533333344454444332 3456677777644
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.0073 Score=50.43 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=67.2
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec-C-cH-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC-H-TR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~-P-~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
++++||||+|||.+..-.+.....+ + . ++.+++ . .| .-.+| ++.++... ++++........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~-~-~v~lis~D~~R~ga~eQ----L~~~a~~l-~vp~~~~~~~~~-------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-G-K-KVALISADTYRIGAVEQ----LKTYAEIL-GVPFYVARTESD-------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHH----HHHHHHHH-TEEEEESSTTSC--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-c-c-cceeecCCCCCccHHHH----HHHHHHHh-ccccchhhcchh--------
Confidence 6789999999998765444444333 2 2 444444 2 22 33333 34443333 666544221110
Q ss_pred hcCCCcEEEeccHH-HHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHH
Q 014801 154 KNECPQIVVGTPGR-ILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~-l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (418)
|.. +...++. ...+++++|+||-+.+...+......+..+..........+.++||........+.
T Consensus 68 -----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 68 -----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp -----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred -----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 111 1112221 11235678999999755433334456666666666666788999998765444433
Q ss_pred H
Q 014801 233 K 233 (418)
Q Consensus 233 ~ 233 (418)
.
T Consensus 135 ~ 135 (196)
T PF00448_consen 135 A 135 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>PHA02533 17 large terminase protein; Provisional
Probab=96.91 E-value=0.0063 Score=58.87 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.|+|+|++.+..+..++-.++..+=..|||.+....++..+...++ .++++++|+..-+..+.+.++.+....|
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~-~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKD-KNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 6899999999887666667888899999998766444433322222 3899999999999988888877665443
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.89 E-value=0.0018 Score=65.78 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
..|++-|++++.. ....++|.|+.|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999864 35689999999999999877777666643 32344899999999999999998887754
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.84 E-value=0.019 Score=54.14 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhcc-CCCCCCeeEEEec-C-cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLC-H-TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~-~~~~~~~~~lii~-P-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (418)
++.+++.||||+|||.+....+.... ...+ . ++.++. . .+.-+ .+.++.++... ++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~-~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~~~----------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-K-KVALITLDTYRIGA---VEQLKTYAKIM-GIPVEV----------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-C-eEEEEECCccHHHH---HHHHHHHHHHh-CCceEc-----------
Confidence 34588999999999977554433333 2222 1 444443 2 22211 12233333222 443322
Q ss_pred HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCcc-HH
Q 014801 151 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKE-IR 228 (418)
Q Consensus 151 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~-~~ 228 (418)
+.+++.+...+.. +.++++|+||.+-...........+..+.... ......+.++||.... ..
T Consensus 284 -----------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 284 -----------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred -----------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 2233444444432 23678999999875433222233455555422 2234478899987653 33
Q ss_pred HHHHHh
Q 014801 229 PVCKKF 234 (418)
Q Consensus 229 ~~~~~~ 234 (418)
.....+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 333333
No 229
>PRK08727 hypothetical protein; Validated
Probab=96.84 E-value=0.0054 Score=52.97 Aligned_cols=47 Identities=4% Similarity=0.050 Sum_probs=25.9
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCC-CCccEEEEEecCCcc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKE 226 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~ 226 (418)
.+.++||+||+|.+.........+-.+++... ...++++.|...|..
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 34568999999988754333334444444332 233455555545444
No 230
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.83 E-value=0.0023 Score=64.98 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=56.1
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.|++-|++++.. ....++|.|+.|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 689999999874 35689999999999999877766666542 32344799999999999999999887754
No 231
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.82 E-value=0.002 Score=52.19 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=54.4
Q ss_pred EEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCC
Q 014801 78 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 157 (418)
Q Consensus 78 ~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (418)
++.|+-|-|||.+.-+++...+..+. .++++.+|+.+-++...+.+..-.... +.+..... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~----~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKK----RIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhcccc-cccccccc----cccccccccccc
Confidence 57899999999876665555555443 379999999987777655544332222 22210000 000000111123
Q ss_pred CcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc
Q 014801 158 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 158 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (418)
..|-+..|+.+... -...+++|||||=.+. ...+..+.... ..+++|.|...
T Consensus 74 ~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp-----~p~L~~ll~~~----~~vv~stTi~G 125 (177)
T PF05127_consen 74 QRIEFVAPDELLAE-------KPQADLLIVDEAAAIP-----LPLLKQLLRRF----PRVVFSTTIHG 125 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCS----SEEEEEEEBSS
T ss_pred ceEEEECCHHHHhC-------cCCCCEEEEechhcCC-----HHHHHHHHhhC----CEEEEEeeccc
Confidence 46777777777532 1234779999997543 34555554333 25677777753
No 232
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0057 Score=57.66 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=16.8
Q ss_pred cEEEEccCCCchhhHHHHHhhh
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~ 97 (418)
..+++||.|+|||.++.+.+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999876544433
No 233
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.76 E-value=0.01 Score=57.20 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=81.4
Q ss_pred HHHHHhHHhhhc-----C----CcEEEEccCCCchhhHHHHHhhhcc-CCCCCCeeEEEecCcHHHHHHHHHHHHHHhcc
Q 014801 62 EVQHECIPQAIL-----G----MDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLCHTRELAYQICHEFERFSTY 131 (418)
Q Consensus 62 ~~Q~~~~~~~~~-----~----~~~~v~~~tGsGKT~~~~l~~~~~~-~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~ 131 (418)
|||+-++..++- + +.+++..|=|.|||.......+..+ ..+..+..++++++++.-+....+.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 688888777662 2 2488899999999975554434333 33444558999999999999999988888765
Q ss_pred CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc--CCCCCCCccEEEEechhhhccCCCCHHHHHHHHhh
Q 014801 132 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 209 (418)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~ 209 (418)
.+...... .. . ........|.....+.+...+.. ....=.+..++|+||+|...+ ......+..-...
T Consensus 81 ~~~l~~~~--~~---~----~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~-~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 81 SPELRKRK--KP---K----IIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD-DELYDALESGMGA 150 (477)
T ss_pred Chhhccch--hh---h----hhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC-HHHHHHHHhhhcc
Confidence 43332110 00 0 00000012222211111111111 112223568999999998765 2344444444444
Q ss_pred CCCCccEEEEE
Q 014801 210 TPHDKQVMMFS 220 (418)
Q Consensus 210 ~~~~~~~i~lS 220 (418)
. .+++++.+|
T Consensus 151 r-~~pl~~~IS 160 (477)
T PF03354_consen 151 R-PNPLIIIIS 160 (477)
T ss_pred C-CCceEEEEe
Confidence 3 344444443
No 234
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.01 Score=51.39 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
.++++.||+|+|||..+.. +...+..... .+ +.++..++..++
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~g~--~v-~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAKGR--SV-IVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHcCC--Ce-EEEEHHHHHHHH
Confidence 5799999999999976443 3333333221 34 334445555544
No 235
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.74 E-value=0.0039 Score=57.72 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=41.2
Q ss_pred CCcHHHHHhHHhh------hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 59 HPSEVQHECIPQA------ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 59 ~l~~~Q~~~~~~~------~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
+|++-|++++..+ .++..++|.|+-|+|||+.+ -.+...+.. . +..+++++||-.-+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~-~-~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS-R-GKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc-c-cceEEEecchHHHHH
Confidence 4788999999888 55788999999999999753 233333332 2 236888899865443
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.73 E-value=0.011 Score=63.66 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHH--HHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 59 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFV--LSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~--l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
.|++-|++|+..++.. +-++|.|..|+|||++.- +.++..+.... +.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~-g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESE-RPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhcc-CceEEEEechHHHHHHH
Confidence 7899999999999864 568999999999997632 22222222222 23788899987665544
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.72 E-value=0.0055 Score=49.53 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=31.8
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
...+++||||+|.+.. .....+.+.++.-+.+..++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4688999999998875 566778888888877786666665543
No 238
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.72 E-value=0.015 Score=56.14 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred HhhcCCCeEEEEeCCchhHHHHHHHHHhCCC-------CeEEecCCCCHHHHHHHHHhhh----cCCccEEEE--ecccc
Q 014801 274 LDALDFNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQEERLTRYKGFK----EGNKRILVA--TDLVG 340 (418)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~--t~~l~ 340 (418)
....+ +.+++|+++.+....+.+.+.+.|+ +.+.+....+ -..+++.+. .|.--+|++ -+-++
T Consensus 625 ~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlS 700 (821)
T KOG1133|consen 625 SNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLS 700 (821)
T ss_pred HhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccc
Confidence 33345 8899999999999999988886543 2333333333 344555553 344345554 48899
Q ss_pred cCCCCCC--CCEEEEecCCCC--------------------------------hhhhhhhcccccCCCCceeEEEEecC
Q 014801 341 RGIDIER--VNIVINYDMPDS--------------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 341 ~G~d~~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
+|||+.+ +++|+..+.|.. ....-|.+|||.|..++--++++++.
T Consensus 701 EGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 701 EGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 9999987 788887776641 01235999999998878778888773
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.017 Score=49.89 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=21.5
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEe
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 111 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii 111 (418)
..+++.|++|+|||..+. ++...+...+ ..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~g--~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLRG--KSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhcC--CeEEEE
Confidence 468999999999997644 3444443322 245555
No 240
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.67 E-value=0.0057 Score=61.80 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=55.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.|++-|++++.. ...+++|.|+.|||||.+.+..+...+.. +....++++++.|+..+.++.+++.+...
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 378999999864 35789999999999999887777777643 33344789999999999999888876543
No 241
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.64 E-value=0.00025 Score=69.04 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=57.7
Q ss_pred HHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhc---CCccEEEEecccccC
Q 014801 268 RKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE---GNKRILVATDLVGRG 342 (418)
Q Consensus 268 ~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~t~~l~~G 342 (418)
..|..+++.. .+++++||..-......+..++.-.+ ....+.|..+...|...+..|+. .....|++|...+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3444444443 56799999999999999988888777 88889999999999999999983 345677888876655
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.62 E-value=0.0086 Score=51.52 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999976543
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.61 E-value=0.0086 Score=57.31 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=25.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..+++.||+|+|||..+. ++...+.....+.+++++.. ..+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 458999999999997543 33333333222225565543 4444433
No 244
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.60 E-value=0.019 Score=62.68 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=43.9
Q ss_pred CCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhcc---CCCCCCeeEEEecCcHHHHHHH
Q 014801 58 EHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQT---EPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~---~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..|++.|++|+..++.+ +-++|.|..|+|||++.- .+...+ ... .+.+++.++||---+.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~-~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPES-ERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcc-cCceEEEECCcHHHHHHH
Confidence 37899999999999985 458999999999997532 222222 222 223688899997666543
No 245
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.018 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
+.++++.|++|+|||..+. ++...+.... +..++++.. .++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFPF-VEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEEH-HHHHH
Confidence 5679999999999997543 3444443321 225566553 34433
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.0056 Score=58.21 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 123 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~ 123 (418)
..+++.|++|+|||..+ -++...+.....+.+++++.. ..+..+...
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999643 344444433222336666555 455554433
No 247
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.56 E-value=0.0049 Score=52.57 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccH
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 227 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~ 227 (418)
...+++++|++|.+.+...+...+..+++.. ..+.++++.|...|...
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4677899999999876433344454444443 33456677776766553
No 248
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.55 E-value=0.063 Score=54.18 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=20.8
Q ss_pred cHHHHHhHHhhhc----C---CcE-EEEccCCCchhhHHHH
Q 014801 61 SEVQHECIPQAIL----G---MDV-ICQAKSGMGKTAVFVL 93 (418)
Q Consensus 61 ~~~Q~~~~~~~~~----~---~~~-~v~~~tGsGKT~~~~l 93 (418)
|.-|.+.+..++. + .++ +|.|+||+|||.+.-.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH
Confidence 5555555544333 1 234 5999999999977543
No 249
>PLN03025 replication factor C subunit; Provisional
Probab=96.50 E-value=0.029 Score=51.09 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=24.3
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+.+++|+||+|.+.. .....+.+..+..+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~--~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTS--GAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCH--HHHHHHHHHHhcccCCceEEEEe
Confidence 467899999998865 33455555565555555444433
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.015 Score=57.67 Aligned_cols=39 Identities=8% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+++++||||+|.+.. .-...+.+.++.-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~--~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCH--HHHHHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998875 23445555566555555555544
No 251
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.014 Score=52.94 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
+.++++.|++|+|||..+...+...+..+ ..++++ +...+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEE-EHHHHHHHH
Confidence 57899999999999976543333333322 245554 434554443
No 252
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.47 E-value=0.019 Score=52.84 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
...++||+||+|.+.. .....+..++.......++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4567899999998754 233445555655555565555443
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.47 E-value=0.01 Score=56.03 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=22.8
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
..+++.||+|+|||..+ .++...+.....+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 35799999999999754 33444433322223566664
No 254
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.44 E-value=0.02 Score=55.97 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHH-HHHHHHhccCCCc
Q 014801 59 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC-HEFERFSTYLPDI 135 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~-~~~~~~~~~~~~~ 135 (418)
..+|||.+.++.+... +.+.+..++-+|||.+.+..+...+...+. .++++.||..++..+. .++..+....|.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 6789999999987764 568999999999999766666666665554 5899999999999976 4566555444333
Q ss_pred eEEEEE---cCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 136 KVAVFY---GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 136 ~~~~~~---~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+-.+.. ...........+. + ..+.++....-. .+.-..++++++||++.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-g-g~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-G-GFLYLVGANSPS------NLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecC-C-CEEEEEeCCCCc------ccccCCcCEEEEechhhccc
Confidence 211111 0000011111111 2 244444322221 22345678999999998853
No 255
>PRK08116 hypothetical protein; Validated
Probab=96.41 E-value=0.026 Score=49.78 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..+++.|++|+|||..+. ++.+.+.... . .++++ +...+..++
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~-~-~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKG-V-PVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcC-C-eEEEE-EHHHHHHHH
Confidence 349999999999997654 3444443322 1 34444 444554433
No 256
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.40 E-value=0.052 Score=47.66 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=67.1
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC-c--HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH-T--RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 151 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (418)
..+++.|++|+|||..+...+......+ . ++.++.. + .+.+.||....... ++++...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~-~v~~i~~D~~ri~~~~ql~~~~~~~-----~~~~~~~----------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK--K-TVGFITTDHSRIGTVQQLQDYVKTI-----GFEVIAV----------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC--C-eEEEEecCCCCHHHHHHHHHHhhhc-----CceEEec-----------
Confidence 5689999999999976554333322211 2 3444432 2 24555554333222 3333221
Q ss_pred HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc-cHHHH
Q 014801 152 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 230 (418)
Q Consensus 152 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~ 230 (418)
.+++.+...+..-. ...++++++||-+-...........+..+.....+...++.+|||... +....
T Consensus 137 -----------~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 137 -----------RDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----------CCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 23333433322110 123578899999976533222333444555444444446779998754 55555
Q ss_pred HHHhc
Q 014801 231 CKKFM 235 (418)
Q Consensus 231 ~~~~~ 235 (418)
++.|.
T Consensus 205 ~~~f~ 209 (270)
T PRK06731 205 ITNFK 209 (270)
T ss_pred HHHhC
Confidence 55553
No 257
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.016 Score=52.65 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=31.1
Q ss_pred CCcHHHHHhHHhhhcCC----cEEEEccCCCchhhHHHHHhhhcc
Q 014801 59 HPSEVQHECIPQAILGM----DVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~----~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.++|||...+..+.+.+ ..++.||.|.|||..+...+...+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 45899999999988743 478999999999976654444443
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.056 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=23.4
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
++|.|++|+|||..+...+...... +..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcch
Confidence 5789999999997654333333322 2256777654443
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.023 Score=55.50 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=26.2
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
.+++++||||+|.+.. ...+.+.+.++.-+.+..+|+.|..
T Consensus 123 gr~KViIIDEah~Ls~--~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCH--HHHHHHHHhhccCCCCceEEEEeCC
Confidence 4678999999998865 2334455555555555655555543
No 260
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.32 E-value=0.0072 Score=61.60 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
..|++-|++++.. ...+++|.|+.|||||.+...-+...+... -.+.++|+++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3689999999874 357899999999999998777776666432 2334799999999999998888877653
No 261
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.015 Score=56.79 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+.+++||||+|.+.. .....+.+.++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~--~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLST--HSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhcCCCCcEEEEEE
Confidence 4578899999998865 33445555566555555455544
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.028 Score=56.94 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 219 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (418)
.+++++||||+|.+.. .....+.+.++.-+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE
Confidence 4678899999998864 3344555555555555555554
No 263
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.031 Score=54.06 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+++++||||+|.+.. .....+.+.++..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~--~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG--HSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH--HHHHHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875 33445555666655666566554
No 264
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.29 E-value=0.042 Score=53.59 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCC-CccEEEEEecCCcc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKE 226 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~ 226 (418)
.++++|+|||+|.+.+.......+..+++.+.. +.++|+.|-..+..
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 457889999999887643333444445444433 45566555444444
No 265
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.03 Score=53.45 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
..+.+++||||+|.+.. .....+.+.++.-+....+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~--~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN--SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 35788999999998865 22344555555555555455444
No 266
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.031 Score=57.04 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+++++||||+|.+.. ...+.|.++++..+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 5678999999999875 44456667777666666666655
No 267
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.23 E-value=0.063 Score=50.65 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=29.8
Q ss_pred cEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh
Q 014801 183 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 183 ~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
++||||.+-...........+..+........-++.++|+...+....+..+
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 7799999854432223334455555555455557777777765544444443
No 268
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.035 Score=52.81 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=23.4
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
..+++.||+|+|||..+. ++...+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 458999999999997543 33333333222236666654
No 269
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.026 Score=51.14 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.+.|++||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 468999999999997653
No 270
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.15 E-value=0.012 Score=63.30 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=76.9
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
++++-|++++. ..+++++|.|+.|||||.+..-.++..+..+....++++++=|+..+.++.+++++..... +.
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--~~-- 74 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--LQ-- 74 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH--Hh--
Confidence 35889999997 4688999999999999998877777766544333479999999999999888887644221 00
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHH-HHhcCCCCCC-CccEEEEechhh
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLK-NVRHFILDECDK 192 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~-~~~~~~~~~~-~~~~iViDE~h~ 192 (418)
...........+.. -...-|+|.+.|.. +++.....+. +..+=|.||...
T Consensus 75 ---~~p~~~~L~~q~~~-~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 ---QEPNSKHLRRQLAL-LNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ---cCchhHHHHHHHhh-ccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00011111111111 23677888888854 4443222111 123345777664
No 271
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.11 E-value=0.026 Score=50.44 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 123 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~ 123 (418)
.+.++|||+|+|||..+-+.+-.....+ -+.+=+.-+.+-++...+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRD 208 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHH
Confidence 3589999999999975543333222221 134444444444444333
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.09 E-value=0.031 Score=48.07 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|++|+|||..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999996543
No 273
>PRK09183 transposase/IS protein; Provisional
Probab=96.07 E-value=0.03 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.0
Q ss_pred hhcCCcEEEEccCCCchhhHHHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLS 94 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~ 94 (418)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 445788999999999999765543
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.06 E-value=0.026 Score=50.09 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 47 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 47 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
++.++|...+...-.+.-.+.+.-+..|.-+++.|++|+|||..+.-.+...+... +.+++++.-- .-..++.+.+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcc-cCHHHHHHHHH
Confidence 34455553333332222222333445577799999999999975554444443331 2267777642 22344444443
Q ss_pred H
Q 014801 127 R 127 (418)
Q Consensus 127 ~ 127 (418)
.
T Consensus 80 ~ 80 (271)
T cd01122 80 G 80 (271)
T ss_pred H
Confidence 3
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.05 E-value=0.13 Score=39.67 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.9
Q ss_pred EEEEccCCCchhhHH
Q 014801 77 VICQAKSGMGKTAVF 91 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~ 91 (418)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999754
No 276
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.024 Score=55.76 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+++++||||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~--~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN--TAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCH--HHHHHHHHhcccCCCCeEEEEEE
Confidence 4678999999998875 22334444444444445455444
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.01 E-value=0.072 Score=47.16 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred CcHHHHHhHHhhh----cCC-cEEEEccCCCchhhHHHHHhhhccC
Q 014801 60 PSEVQHECIPQAI----LGM-DVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 60 l~~~Q~~~~~~~~----~~~-~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
+.+.+++++..+. .+. .+++.||+|+|||+.+- .+...+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~-~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR-NLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHHhcC
Confidence 3445555555443 233 58899999999997644 3344433
No 278
>PF13173 AAA_14: AAA domain
Probab=96.01 E-value=0.098 Score=40.35 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=24.6
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecC
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 223 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (418)
.-.+|++||+|.+. ++...+..+.+.. .+.+ +.+|++.
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~-~~~~-ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNG-PNIK-IILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhc-cCce-EEEEccc
Confidence 45679999999874 5666677766654 3444 4444443
No 279
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.01 E-value=0.026 Score=53.18 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=76.9
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
.++.|+.|||||.+....++..+.....+.+++++-++.. +...+...+....... ++....-....... -.+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~---i~~~~ 79 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSME---IKILN 79 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccE---EEecC
Confidence 5789999999998888777776665422347888888886 5555666676554443 33211111110000 00111
Q ss_pred CCCcEEEecc-HHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh
Q 014801 156 ECPQIVVGTP-GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 156 ~~~~i~v~T~-~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
....|++..- +...++. ....+.++.+||+..+.. ..+...+.++.. +.....+.+|.+|.....-+.+.+
T Consensus 80 ~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~-~~~~~l~~rlr~--~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTF-EDIKELIPRLRE--TGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCH-HHHHHHHHHhhc--cCCccEEEEEcCcCCCccHHHHHH
Confidence 1124555443 2222211 123368899999998754 223333333211 122225889999876433333333
No 280
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.01 E-value=0.02 Score=51.55 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=37.6
Q ss_pred CcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 60 PSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 60 l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+.+.|.+.+..+.. +.+++++|+||||||.. +-+++..+.......+++.+=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 56777777766554 67899999999999964 34555555322222366666665554
No 281
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.01 E-value=0.052 Score=50.76 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.8
Q ss_pred EEEEccCCCchhhHHHHHh
Q 014801 77 VICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~ 95 (418)
+.++|++|+|||.++.-.+
T Consensus 103 i~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999997654333
No 282
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.00 E-value=0.06 Score=51.16 Aligned_cols=145 Identities=12% Similarity=-0.040 Sum_probs=82.9
Q ss_pred CCcHHHHHhHHhhhc------C----CcEEEEccCCCchhhHHH-HHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAIL------G----MDVICQAKSGMGKTAVFV-LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~------~----~~~~v~~~tGsGKT~~~~-l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
.+-|||+.++..+.- + +.++|..|-+-|||..+. +.....+.....+..+.+++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 688999999998873 1 348999999999996544 22222233334445899999999988888888777
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHH---HHHh--cCCCCCCCccEEEEechhhhccCCCCHHH
Q 014801 128 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL---ALAR--DKDLSLKNVRHFILDECDKMLESLDMRRD 202 (418)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~---~~~~--~~~~~~~~~~~iViDE~h~~~~~~~~~~~ 202 (418)
.....+++.. ..+...+-...+..... ..+. ....+-.+..+.|+||.|.+.... ..
T Consensus 141 mv~~~~~l~~---------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~---~~ 202 (546)
T COG4626 141 MVKRDDDLRD---------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE---DM 202 (546)
T ss_pred HHHhCcchhh---------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH---HH
Confidence 6654421111 00100111112222111 1111 223344567789999999876521 33
Q ss_pred HHHHHhhC--CCCccEEEEEe
Q 014801 203 VQEIFKMT--PHDKQVMMFSA 221 (418)
Q Consensus 203 ~~~~~~~~--~~~~~~i~lSA 221 (418)
+..+..-. .++.++++.|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 33333222 23455677665
No 283
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.96 E-value=0.039 Score=49.19 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred CCCCCcHHHHHhHHhhhcCC-cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHH
Q 014801 56 GFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 118 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~ 118 (418)
++..+++-|...+..+.... +++++|.||||||.. +-++........ +++.+=.+.+|.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhc
Confidence 36688999999998888755 999999999999963 233333333333 788888877663
No 284
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.035 Score=53.07 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=38.8
Q ss_pred CCcccccCCCccCCCCCHHHHHHHHHCCCCCC--cHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 29 QGYVGIHSSGFRDFLLKPELLRAIVDSGFEHP--SEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l--~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
..+...+.-+|++.|--+++...|... +..| +|-+-+++.. -.-..++++||+|.|||+.+
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~a-I~~PiK~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMA-ILAPIKRPDLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHH-HhhhccCHHHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 355666778899988878777777654 1111 2333333321 11456999999999999753
No 285
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.032 Score=51.77 Aligned_cols=39 Identities=8% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++||||+|.+.. .....+.+.....+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~--~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR--HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCH--HHHHHHHHHHhcCCCCeEEEEEc
Confidence 4567999999998864 22334444455444555555544
No 286
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.052 Score=48.91 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCcHHHHHhHHhhhc----C---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 58 EHPSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~----~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
..++|||..++..+.+ + +..++.||.|.||+..+...+...+-.+..... -|+. .+.+. ..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~-------c~~~~--~g 70 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT-------RQLIA--AG 70 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH-------HHHHh--cC
Confidence 3578999999988775 2 248899999999997665444444433221110 0111 11111 12
Q ss_pred cCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC
Q 014801 131 YLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 210 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~ 210 (418)
..|++.+.....+.... .. ...|.|-....+...+.... .....+++|||++|.+.. ...+.+.+.++.-
T Consensus 71 ~HPD~~~i~~~p~~~~~------k~-~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~--~AaNaLLKtLEEP 140 (319)
T PRK08769 71 THPDLQLVSFIPNRTGD------KL-RTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINR--AACNALLKTLEEP 140 (319)
T ss_pred CCCCEEEEecCCCcccc------cc-cccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCH--HHHHHHHHHhhCC
Confidence 23455443211110000 00 01222222122222222111 124678999999999865 4556666777766
Q ss_pred CCCccEEEEEec
Q 014801 211 PHDKQVMMFSAT 222 (418)
Q Consensus 211 ~~~~~~i~lSAT 222 (418)
+.+..+|++|..
T Consensus 141 p~~~~fiL~~~~ 152 (319)
T PRK08769 141 SPGRYLWLISAQ 152 (319)
T ss_pred CCCCeEEEEECC
Confidence 666666666654
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.92 E-value=0.042 Score=48.39 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchhhHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l 93 (418)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999976543
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.19 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchhhHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~ 95 (418)
++.+.++||+|+|||..+...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5668899999999997654433
No 289
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.035 Score=53.06 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.4
Q ss_pred cEEEEccCCCchhhHHHHH
Q 014801 76 DVICQAKSGMGKTAVFVLS 94 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~ 94 (418)
..+++||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876543
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.042 Score=53.81 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++||||+|.+.. .....+...++..+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~--~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT--AGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 5678999999998875 33445555666555556555555
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.88 E-value=0.042 Score=61.62 Aligned_cols=62 Identities=27% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHH---HHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 58 EHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~---l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..|++.|++|+..++.+ +-++|.|+.|+|||+... -++...... . +.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~-g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-E-QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-c-CCeEEEEeChHHHHHHH
Confidence 47999999999998875 447889999999997541 122222221 1 23788899997655544
No 292
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.034 Score=54.72 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+...+++||||+|.+.. .....+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~--~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 45678999999998864 23445555565555566566655
No 293
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.85 E-value=0.049 Score=55.00 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.++++.+|+.+.+.+.++.+.+. ++.+..++|+++..+|..+++...+|+.+|+|+|. .+...+.+.++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4568999999999999888776653 68899999999999999999999999999999996 455667788888887
Q ss_pred Ee
Q 014801 353 NY 354 (418)
Q Consensus 353 ~~ 354 (418)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 43
No 294
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.091 Score=49.14 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
+.-+.+.||+|+|||......+...........-.++...+.-.. ..+.+..++... ++++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~~~v------------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSVRSI------------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCceecC-------------
Confidence 445899999999999765433332222211111234444442221 122233443333 4444322
Q ss_pred hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCcc-HHHHHH
Q 014801 154 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~~~ 232 (418)
-++..+...+. .+.+.++++||.+-...........+..+.........++.++||.... ......
T Consensus 255 ---------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 255 ---------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred ---------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 12222322222 2456678999986432211112223333322222334578899997654 333444
Q ss_pred Hh
Q 014801 233 KF 234 (418)
Q Consensus 233 ~~ 234 (418)
.+
T Consensus 322 ~f 323 (420)
T PRK14721 322 AY 323 (420)
T ss_pred Hh
Confidence 43
No 295
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.12 Score=45.02 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=65.1
Q ss_pred HhhhcCCc-----EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 014801 69 PQAILGMD-----VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 143 (418)
Q Consensus 69 ~~~~~~~~-----~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 143 (418)
|++..|++ +++-||+|+||++.+- ++...+. ..++-+.+..|+..|.-+-+++.+.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAK-AVATEAn------STFFSvSSSDLvSKWmGESEkLVkn------------ 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAK-AVATEAN------STFFSVSSSDLVSKWMGESEKLVKN------------ 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHH-HHHhhcC------CceEEeehHHHHHHHhccHHHHHHH------------
Confidence 44555554 8999999999996432 2222222 4678888888888886665554321
Q ss_pred cchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC--CHHHHHHH--------HhhCCCC
Q 014801 144 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD--MRRDVQEI--------FKMTPHD 213 (418)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~--~~~~~~~~--------~~~~~~~ 213 (418)
|..+.+. ...+.|+|||++.+.+..+ -....+++ ...-..+
T Consensus 217 ------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 217 ------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 3334343 2456799999998875311 11122221 1222334
Q ss_pred ccEEEEEecCCccH
Q 014801 214 KQVMMFSATLSKEI 227 (418)
Q Consensus 214 ~~~i~lSAT~~~~~ 227 (418)
-.++.+.||-.+..
T Consensus 268 ~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 268 DGVLVLGATNIPWV 281 (439)
T ss_pred CceEEEecCCCchh
Confidence 56888889865543
No 296
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.044 Score=50.04 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=28.7
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
....++|+||++.+.. +....+......-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 5788999999998876 555666666666666665555554
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.77 E-value=0.073 Score=44.14 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.3
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
++|.||+|+|||..++-.+...+..+. +++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999766554555443332 6777765 34456666655554
No 298
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.042 Score=54.31 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+.+++||||+|.+.. .....+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998754 22344555555555556566555
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.77 E-value=0.14 Score=46.49 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=24.9
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
..++||+||+|.+.. ......+..+.+......++|+.+
T Consensus 100 ~~~vliiDe~d~l~~-~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-ADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccC-HHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998733 233445666666666666555544
No 300
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.76 E-value=0.044 Score=48.30 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=58.8
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCC----CCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 150 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~----~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (418)
.+.+++|++|.|||.+.--..-.+-... ...|.+.+-+|...-....+..+-... +.++.. ..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l----gaP~~~---~~~~~~~- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL----GAPYRP---RDRVAKL- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh----CcccCC---CCCHHHH-
Confidence 4699999999999975432222111111 112445666676655555544433322 222111 0000100
Q ss_pred HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCHHHHHHHHhhCCCCc--cEEEEEec
Q 014801 151 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDK--QVMMFSAT 222 (418)
Q Consensus 151 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~~~~~~~~~~~~~~~--~~i~lSAT 222 (418)
-.....+++. -+.+++||||+|++... ......+...++.+.+.. .+|++ +|
T Consensus 134 --------------~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 134 --------------EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred --------------HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 0112334443 35678999999997652 222334555555555543 34443 45
No 301
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.057 Score=52.09 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.3
Q ss_pred EEEEccCCCchhhHHHHHh
Q 014801 77 VICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~ 95 (418)
.++.||.|+|||.++...+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5999999999998765433
No 302
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.086 Score=48.02 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=29.4
Q ss_pred CcHHHHHhHHhhhcC-----CcEEEEccCCCchhhHHHHHhhhcc
Q 014801 60 PSEVQHECIPQAILG-----MDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~-----~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
++|||...+..+.+- +..++.||.|.||+..+...+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 478998888887752 3478999999999977654444333
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.69 E-value=0.042 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~ 97 (418)
+..+++||.|+|||.++-+.+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999876554433
No 304
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.059 Score=51.20 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccHH
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 228 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~ 228 (418)
.+.+++++||+|.+.+.......+..+++.+ ....++++.|.+.|....
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3567899999998865322233344443322 233455555555555444
No 305
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.038 Score=54.55 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 219 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (418)
.+++++||||+|.+.. .....+.+.++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~--~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCH--HHHHHHHHHHHcCCCCeEEEEe
Confidence 4678899999998875 3344555556655555545554
No 306
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.67 E-value=0.16 Score=50.68 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhC-C-CCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccc
Q 014801 265 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 340 (418)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~ 340 (418)
.+.+....++... .++.+||.+++...+..+.+.|++. + ..+..+|++++..+|.+.+....+|+.+|+|+|....
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 4444444444433 4678999999999999999999865 4 6789999999999999999999999999999996522
Q ss_pred cCCCCCCCCEEEEecCCCChhhhhhhccc--------ccCCCCceeEEEEecCCCcHHHHH
Q 014801 341 RGIDIERVNIVINYDMPDSADTYLHRVGR--------AGRFGTKGLAITFVSSASDSDILN 393 (418)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR--------~~R~~~~g~~~~~~~~~~~~~~~~ 393 (418)
=.-++++..+|..+.- -.+|.|-.+. ..|....|..+++-+..-+.+-+.
T Consensus 252 -FaP~~~LgLIIvdEEh--d~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 252 -FAPVEDLGLVAIWDDG--DDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred -EeccCCCCEEEEEcCC--chhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 2345567777765532 2234443211 123344566666666555544443
No 307
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.65 E-value=0.03 Score=50.59 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCcHHHHHhHHhhh-cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 49 LRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 49 ~~~l~~~~~~~l~~~Q~~~~~~~~-~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
++.+...|. +.+.|.+.+.... .+++++++|+||||||.. +-+++..+.......+++.+-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344444444 4577877777654 478899999999999954 44455443211222367776666654
No 308
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.053 Score=50.13 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=31.6
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCC-ccEEEEEecCCccHH
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-KQVMMFSATLSKEIR 228 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~-~~~i~lSAT~~~~~~ 228 (418)
++++++||+++.+.+.......+-..++.+... .|+++.|..+|.+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 677899999999887544455555555554433 466666666665543
No 309
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.63 E-value=0.16 Score=50.65 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCCcHHHHHhHHhhhcCC--cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 57 FEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~--~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
..+...-|.+.+..++..+ -+++.|+=|-|||.+.-+++........ ..++++.+|+.+-++.....+.+-.... |
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g 289 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFL-G 289 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHh-C
Confidence 3345555666666666643 4888999999999877665533333222 3379999999998888777655433333 3
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCc
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 214 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~ 214 (418)
.+..+...... ...........|-+.+|+... ..-+++|||||=.+. -..+..+.....
T Consensus 290 ~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp-----lplL~~l~~~~~--- 348 (758)
T COG1444 290 YKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP-----LPLLHKLLRRFP--- 348 (758)
T ss_pred Ccccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC-----hHHHHHHHhhcC---
Confidence 32222111100 000000011234455555443 115679999997543 345555555443
Q ss_pred cEEEEEecCCc
Q 014801 215 QVMMFSATLSK 225 (418)
Q Consensus 215 ~~i~lSAT~~~ 225 (418)
.+++|.|+..
T Consensus 349 -rv~~sTTIhG 358 (758)
T COG1444 349 -RVLFSTTIHG 358 (758)
T ss_pred -ceEEEeeecc
Confidence 6888888753
No 310
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.63 E-value=0.024 Score=49.41 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=35.1
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCC
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ 105 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~ 105 (418)
|....+|+++++++-+.+.+.. ...=++|.||||||||.+ +.+++.++.++...
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~~ 155 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKAK 155 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCCc
Confidence 3445567777776666552221 123379999999999976 56777777766543
No 311
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.061 Score=53.93 Aligned_cols=120 Identities=9% Similarity=0.140 Sum_probs=58.2
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec-CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhh
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC-HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 154 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~-P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (418)
-+.++||||+|||.++...+.......+.. ++.++. .+--.+ ..+.++.+.... ++++..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~Rig--A~eQL~~~a~~~-gvpv~~--------------- 247 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRIG--ALEQLRIYGRIL-GVPVHA--------------- 247 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccchH--HHHHHHHHHHhC-CCCccc---------------
Confidence 478899999999977554443332222212 444433 221110 123344444333 443322
Q ss_pred cCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCc
Q 014801 155 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 155 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (418)
+.+++.+...+.. +.+.++|+||=+-....+......+..+.....+...++.++||...
T Consensus 248 -------~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~ 307 (767)
T PRK14723 248 -------VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG 307 (767)
T ss_pred -------cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH
Confidence 2244445444442 23557788887775433222233333333333344457777787653
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.63 E-value=0.051 Score=47.26 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=26.4
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
..|.-++|.|++|+|||..++-.+...+.... .+++++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeC
Confidence 34566899999999999765544444444312 26788774
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.62 E-value=0.066 Score=51.16 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=55.6
Q ss_pred CHHHHHHHHHCCCCCCcH----HHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCCCC---CCeeEEEecCcH
Q 014801 45 KPELLRAIVDSGFEHPSE----VQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTR 115 (418)
Q Consensus 45 ~~~~~~~l~~~~~~~l~~----~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~---~~~~~lii~P~~ 115 (418)
++-++..|.++.-.+++. +|++-=+.+.+ ++-++|.|..|||||.+++--+.-.+.... .+..++++.|.+
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~ 270 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNR 270 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcH
Confidence 345667777764444443 34443333333 556899999999999988765555544332 222499999999
Q ss_pred HHHHHHHHHHHHHh
Q 014801 116 ELAYQICHEFERFS 129 (418)
Q Consensus 116 ~l~~q~~~~~~~~~ 129 (418)
....-+.+.+-.++
T Consensus 271 vFleYis~VLPeLG 284 (747)
T COG3973 271 VFLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHHhchhhc
Confidence 98887777666653
No 314
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.064 Score=52.86 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
..+++++||||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~--~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST--NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCH--HHHHHHHHHHHcCCCCeEEEEEe
Confidence 35678999999998865 33445666666555555555544
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.61 E-value=0.14 Score=45.20 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCC------CCccEEEEEecCCccHHHHHHHh
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP------HDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~------~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
.++++|+||=+-....+......+..+..... ..-.++.++|+...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45788999988765432333344555544433 44457888888665444444443
No 316
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.60 E-value=0.03 Score=50.16 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=37.2
Q ss_pred CcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 60 PSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 60 l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+.+.|.+.+..+.. +++++++|+||||||.. +-+++..+.......+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 44556666655444 67899999999999965 44555665443222367777666665
No 317
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.085 Score=48.73 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecC
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 223 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (418)
.....++||||+|.+.. .....+.+.++.-+....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 35678999999998754 34445666666555555455555443
No 318
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.55 E-value=0.25 Score=48.62 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=42.8
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
...+-.++.+|=|-|||.+..+.+...+... +.++++.+|...-+.+..+.++....
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3356688899999999987765555444322 34899999999999998888777664
No 319
>CHL00181 cbbX CbbX; Provisional
Probab=95.54 E-value=0.051 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhhHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLS 94 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~ 94 (418)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999876543
No 320
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.097 Score=47.53 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=29.3
Q ss_pred CcHHHHHhHHhhhcC-----CcEEEEccCCCchhhHHHHHhhhcc
Q 014801 60 PSEVQHECIPQAILG-----MDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~-----~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
++|||...+..+... +..++.||.|.|||..+...+...+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 478888888887752 3488999999999977655444433
No 321
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.065 Score=52.00 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
.+.+++||||+|.+.. .....+...++..+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~--~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK--QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4678999999998865 33445566666555556555555
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.53 E-value=0.084 Score=52.62 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=36.8
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
+.-++|+|+-|.+.+ ......+..++++.+.+...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~-~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISD-PALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCc-ccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 345799999999987 6778889999999999999999887754
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.071 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCchhhHHHHHhh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTL 96 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~ 96 (418)
++.++++||+|+|||..+.-.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999976554443
No 324
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.49 E-value=0.12 Score=48.31 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 46 PELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 46 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
..+++.+.+. +..+...|+++.-..-.|+. -|.|=.|||||.+.++-+...-.+++.. ++++-+=|+.|..++.+.+
T Consensus 150 ~a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~-~I~~Tfftk~L~s~~r~lv 226 (660)
T COG3972 150 NALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDS-RIAFTFFTKILASTMRTLV 226 (660)
T ss_pred HHHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCc-eEEEEeehHHHHHHHHHHH
Confidence 4456666653 66778889888766666666 7788899999987666555555555544 8999999999999988877
Q ss_pred HHHh
Q 014801 126 ERFS 129 (418)
Q Consensus 126 ~~~~ 129 (418)
.+++
T Consensus 227 ~~F~ 230 (660)
T COG3972 227 PEFF 230 (660)
T ss_pred HHHH
Confidence 7664
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.12 Score=48.14 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCC---CCccEEEEEecCCcc-HHHHHHHh
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP---HDKQVMMFSATLSKE-IRPVCKKF 234 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~---~~~~~i~lSAT~~~~-~~~~~~~~ 234 (418)
.++++|+||=+-...........+..+..... +.-.++.++||.... ....+..+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45688999976543222223334444444432 223578889998763 34444433
No 326
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.44 E-value=0.061 Score=52.45 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++||||+|.+.. .....+...+...+....+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~--~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLST--SAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCH--HHHHHHHHHHHhCCCcEEEEEEC
Confidence 3567899999998864 33445555555555555444444
No 327
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.063 Score=52.63 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchhhHHHHHhhhcc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
+..++.||.|+|||.++.+.+....
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3478999999999987765444443
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.32 E-value=0.026 Score=47.23 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.+.+.||+||++.+.. +....+++..+...+..++.+
T Consensus 112 grhKIiILDEADSMT~--gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA--GAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhh--HHHHHHHHHHHHHcccchhhh
Confidence 5677899999998875 556667666666655554444
No 329
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.13 Score=46.37 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCcHHHHHhHHhhhc----C---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh-c
Q 014801 59 HPSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS-T 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~-~ 130 (418)
.++|||...+..+.. + +..++.||.|.||+..+...+...+-.+... . -|.. ...++.+. .
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~---~Cg~-------C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-E---ACGF-------CHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-C---CCCC-------CHHHHHHHcC
Confidence 567888888877664 2 3489999999999976554444433332211 1 1111 11122222 2
Q ss_pred cCCCceEEEEEc-CcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhh
Q 014801 131 YLPDIKVAVFYG-GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 209 (418)
Q Consensus 131 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~ 209 (418)
..|++....-.+ +. .|-|-....+...+... -.....+++|||++|.+.. ...+.+.+.++.
T Consensus 72 ~HPD~~~i~p~~~~~--------------~I~vdqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~--~AaNaLLKtLEE 134 (319)
T PRK06090 72 NHPDLHVIKPEKEGK--------------SITVEQIRQCNRLAQES-SQLNGYRLFVIEPADAMNE--SASNALLKTLEE 134 (319)
T ss_pred CCCCEEEEecCcCCC--------------cCCHHHHHHHHHHHhhC-cccCCceEEEecchhhhCH--HHHHHHHHHhcC
Confidence 223443332111 10 12111111122222111 1235678999999998865 455666676766
Q ss_pred CCCCccEEEEEecC
Q 014801 210 TPHDKQVMMFSATL 223 (418)
Q Consensus 210 ~~~~~~~i~lSAT~ 223 (418)
-+.+..+|++|..+
T Consensus 135 Pp~~t~fiL~t~~~ 148 (319)
T PRK06090 135 PAPNCLFLLVTHNQ 148 (319)
T ss_pred CCCCeEEEEEECCh
Confidence 66666555555443
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.27 E-value=0.087 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.5
Q ss_pred cEEEEccCCCchhhHHHHHhhh
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~ 97 (418)
.++++||||+|||.+....+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999775543333
No 331
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.07 Score=51.93 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=26.0
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
..+.+++||||+|.+.. .....+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865 22344555555555556566655
No 332
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.25 E-value=0.16 Score=49.66 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhcc-CCCceEEEEEcCcchHHHHHHh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
+-.++..|=-.|||.+.. +++..+.....+.++++.+|.+..++...+++...... .+...+....| ... ...+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEe
Confidence 457889999999998655 34433332222338999999999999999998876542 11212222222 111 0011
Q ss_pred hcCC-CcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecC
Q 014801 154 KNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 223 (418)
Q Consensus 154 ~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (418)
.++. +.|.+.+. -..+...=++++++|+|||+-+.. +....+.-.... .++++|++|.|-
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~--~n~k~I~ISS~N 390 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQ--TNCKIIFVSSTN 390 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhc--cCccEEEEecCC
Confidence 1121 23444321 111222334788999999997765 222222222222 378899999884
No 333
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.19 Score=41.13 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=54.6
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
=.++.+|++||||...+-.+.+....+. ++++..|...- ++ +.....-.-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~---------R~-----~~~~V~Sr~G~~~--------- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDT---------RY-----GVGKVSSRIGLSS--------- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccc---------cc-----ccceeeeccCCcc---------
Confidence 3588999999999865444444444333 78888885421 11 1111111111111
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhh
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 209 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~ 209 (418)
.-+.|-....+...+....... .++.|.||||+-+.. ..-..+.++.+.
T Consensus 60 --~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~--~~v~~l~~lad~ 108 (201)
T COG1435 60 --EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE--ELVYVLNELADR 108 (201)
T ss_pred --cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH--HHHHHHHHHHhh
Confidence 1345555555665555433222 378999999995543 333334444443
No 334
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.12 Score=46.77 Aligned_cols=133 Identities=11% Similarity=0.173 Sum_probs=67.5
Q ss_pred CcHHHHHhHHhhhc----C---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhc-c
Q 014801 60 PSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST-Y 131 (418)
Q Consensus 60 l~~~Q~~~~~~~~~----~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~-~ 131 (418)
++|||+..+..+.+ + +-.++.||.|.||+..+...+...+-....... -|-. ...++.+.. .
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~-------C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQ-------CHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC-------CHHHHHHhcCC
Confidence 46888877777664 2 347899999999997665444444332221101 1111 112222221 2
Q ss_pred CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHH---HhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHh
Q 014801 132 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILAL---ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 208 (418)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~---~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~ 208 (418)
.|++....-..+. .| ..+.+..+ +.... .....+++|||++|.+.. .....+.+.++
T Consensus 73 HPD~~~i~p~~~~--------------~I---~id~iR~l~~~~~~~~-~~g~~KV~iI~~a~~m~~--~AaNaLLKtLE 132 (325)
T PRK06871 73 HPDFHILEPIDNK--------------DI---GVDQVREINEKVSQHA-QQGGNKVVYIQGAERLTE--AAANALLKTLE 132 (325)
T ss_pred CCCEEEEccccCC--------------CC---CHHHHHHHHHHHhhcc-ccCCceEEEEechhhhCH--HHHHHHHHHhc
Confidence 2343322111111 11 11222222 11111 234678899999998875 45566767777
Q ss_pred hCCCCccEEEEEec
Q 014801 209 MTPHDKQVMMFSAT 222 (418)
Q Consensus 209 ~~~~~~~~i~lSAT 222 (418)
.-+.+..++++|..
T Consensus 133 EPp~~~~fiL~t~~ 146 (325)
T PRK06871 133 EPRPNTYFLLQADL 146 (325)
T ss_pred CCCCCeEEEEEECC
Confidence 66666645554443
No 335
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.21 E-value=0.035 Score=52.15 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=31.5
Q ss_pred CcHHHHHhHHhhhcCCc--EEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 60 PSEVQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~~~--~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
+.+.|.+.+..++.... +++.||||||||.+ +..++..+....
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 36788888877777544 78899999999976 455666655444
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.21 E-value=0.068 Score=44.45 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
....+++||||+|.+.. .....+...++..+....+++++
T Consensus 94 ~~~~kviiide~~~l~~--~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE--AAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEE
Confidence 35678899999998865 23344555555544444444443
No 337
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.21 E-value=0.07 Score=48.61 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCcHHHHHhHHhhhc----C---CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh-c
Q 014801 59 HPSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS-T 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~----~---~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~-~ 130 (418)
.++|||...+..+.+ + +-.++.||.|.||+..+...+...+-..+.... -|-. ...++.+. .
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~-------C~sC~~~~~g 71 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGH-------CRGCQLMQAG 71 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC-------CHHHHHHHcC
Confidence 367899888887764 2 347899999999997665444443332221101 0111 11222222 2
Q ss_pred cCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC
Q 014801 131 YLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 210 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~ 210 (418)
..|++....-.++. ..|-|-....+...+.... .....+++|||++|.+.. .....+.+.++.-
T Consensus 72 ~HPD~~~i~p~~~~-------------~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~--~AaNaLLKtLEEP 135 (334)
T PRK07993 72 THPDYYTLTPEKGK-------------SSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTD--AAANALLKTLEEP 135 (334)
T ss_pred CCCCEEEEeccccc-------------ccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCH--HHHHHHHHHhcCC
Confidence 22344333211110 0111111112222222111 235678999999998875 4556666666665
Q ss_pred CCCccEEEEEec
Q 014801 211 PHDKQVMMFSAT 222 (418)
Q Consensus 211 ~~~~~~i~lSAT 222 (418)
+.+.-++++|..
T Consensus 136 p~~t~fiL~t~~ 147 (334)
T PRK07993 136 PENTWFFLACRE 147 (334)
T ss_pred CCCeEEEEEECC
Confidence 555545555543
No 338
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.13 Score=48.40 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+...+++||||+|.+.. .....+...++..+....+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~--~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI--AAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 45678999999998864 22334444455444444444444
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=95.20 E-value=0.19 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=16.6
Q ss_pred EEEEccCCCchhhHHHHHhhhc
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
++++|++|+|||.++.-.+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6889999999998765444433
No 340
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.17 E-value=0.12 Score=52.04 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=63.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 355 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~ 355 (418)
+.++||.+++++.+.++.+.|++ .+..+..+||+++..+|...+....+|+.+|+|+|.... -..+.++..+|.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 57899999999999999999976 478899999999999999999999999999999996432 24556777777554
No 341
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.097 Score=50.58 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
....+++||||+|.+.. .....+.+.+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~--~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH--HHHHHHHHHHhhcCCceEEEEEE
Confidence 35678999999998865 33445566666656666556555
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.09 Score=51.61 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=17.2
Q ss_pred CcEEEEccCCCchhhHHHHHhhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~ 97 (418)
+..+++||.|+|||.++-..+..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999876554433
No 343
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.12 E-value=0.12 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhcc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.+++|.||+|+|||...- .+++.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 569999999999997643 344443
No 344
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.11 E-value=0.098 Score=52.42 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.++++.+|+...+.+.++.+.+ .+.++..++|+++..++..+++...+|+.+|+|+|. .+...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999988877665 368899999999999999999999999999999996 455667777888877
Q ss_pred Ee
Q 014801 353 NY 354 (418)
Q Consensus 353 ~~ 354 (418)
+-
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 43
No 345
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.065 Score=52.92 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+...+++||||+|.+.. .....+...++.-+....+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~--~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST--AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45678899999998865 22344555555554455455554
No 346
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.06 E-value=0.12 Score=50.09 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 355 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~ 355 (418)
.++++|+.+|+...+.++.+.|++. +..+..+||+++..+|...+....+|+.+|+|+|...-. ..+.++..+|.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3578999999999999999999764 678899999999999999999999999999999964322 3456677777544
No 347
>PHA00729 NTP-binding motif containing protein
Probab=95.03 E-value=0.085 Score=44.68 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997543
No 348
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.02 E-value=0.4 Score=43.59 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=24.2
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
..++|++||+|.+.. .....+..+.........+|+.+
T Consensus 102 ~~~vviiDe~~~l~~--~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTS--DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCH--HHHHHHHHHHhcCCCCCeEEEEe
Confidence 457899999998754 22345555666555556555544
No 349
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.95 E-value=0.13 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.1
Q ss_pred CcHHHHHhHHhhhcCCcEEEEccCCCchhhHHH
Q 014801 60 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
+.......+..+..++++++.||+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999997654
No 350
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.93 E-value=0.29 Score=42.14 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
..+.-+++.|++|+|||..++-.+...+.++ .++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCC-CCHHHHHHHHHHh
Confidence 3466789999999999976544444443333 267888743 3334444444443
No 351
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.91 E-value=0.073 Score=50.66 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
|.-+++.|++|+|||...+-.+......+ .+++|+.-. +-..|+....+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEcc-ccHHHHHHHHHHc
Confidence 45589999999999976554444433222 278888753 4455665555554
No 352
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.88 E-value=0.062 Score=44.89 Aligned_cols=53 Identities=11% Similarity=0.301 Sum_probs=25.7
Q ss_pred CccEEEEechhhhccCCCCH----HHHHHHHhhCCC-CccEEEEEecCCccHHHHHHHh
Q 014801 181 NVRHFILDECDKMLESLDMR----RDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~----~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
.-.++|+||||.+.+..... ......+...++ ..-++++|=.+ ..+...+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHHH
Confidence 55789999999988754542 223344444444 34455555554 3344444443
No 353
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.86 E-value=0.027 Score=54.39 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=35.4
Q ss_pred CCCcHHHHHhHHhhhc----CCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 58 EHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~----~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.+|+.+|.+.+..+.+ |+-.++..|||+|||+..+.+++.++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 3789999988877665 88899999999999998887777665
No 354
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.074 Score=48.40 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=60.1
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 154 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (418)
++++.-||+|+|||+.+ ++|+. .. |+....++||.--+.-..
T Consensus 385 RNilfyGPPGTGKTm~A-----------------------relAr--------~S----GlDYA~mTGGDVAPlG~q--- 426 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA-----------------------RELAR--------HS----GLDYAIMTGGDVAPLGAQ--- 426 (630)
T ss_pred hheeeeCCCCCCchHHH-----------------------HHHHh--------hc----CCceehhcCCCccccchH---
Confidence 57999999999999753 22222 11 667777777644332221
Q ss_pred cCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCC-------CCHHHHHHHHhhCCC-CccEEEEEecCCcc
Q 014801 155 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL-------DMRRDVQEIFKMTPH-DKQVMMFSATLSKE 226 (418)
Q Consensus 155 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~-------~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~ 226 (418)
.|+-...+..+..+.+.-+ +++|||++.+.... ..+..+..++-..+. ...+++.-||-.+.
T Consensus 427 ------aVTkiH~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 ------AVTKIHKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred ------HHHHHHHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 1333445555554433222 58999999886431 122334444433333 34577777886554
Q ss_pred HHHH
Q 014801 227 IRPV 230 (418)
Q Consensus 227 ~~~~ 230 (418)
..++
T Consensus 497 dlDs 500 (630)
T KOG0742|consen 497 DLDS 500 (630)
T ss_pred chhH
Confidence 3333
No 355
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.81 E-value=0.18 Score=47.90 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=56.7
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIH 149 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 149 (418)
+..|.-++|.|++|+|||..++-.+.......+ ..++|+.. ..-..|+..++-.... ++....+ .|..+..++
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSl-Em~~~~l~~Rl~~~~~---~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSL-EMSAEQLGERLLASKS---GINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC-CCCHHHHHHHHHHHHc---CCCHHHHhcCCCCHHHH
Confidence 333566899999999999765544434432222 25677763 2233444443322211 3332222 122222211
Q ss_pred H------HHhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 150 K------DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 150 ~------~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
. ..+.. ..+.|. |.+.+....++-......+++||||-.|.+..
T Consensus 265 ~~~~~~~~~l~~--~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 265 NRLLNAVDRLSE--KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1 11222 244543 34444443332211223578999999998864
No 356
>PTZ00293 thymidine kinase; Provisional
Probab=94.77 E-value=0.2 Score=41.99 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
|.=-++.||++||||.-.+-.+.+....+. +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 334588999999999654444444443333 678888864
No 357
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.096 Score=52.33 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=69.7
Q ss_pred echhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec
Q 014801 261 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 337 (418)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 337 (418)
.+.+.+.+....++... .++.+||.+|.......+.+.|+. .|.++..+|+++++.+|...+....+|+.+|+|+|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 34444555554444443 457999999999999999888875 488999999999999999999999999999999995
Q ss_pred ccccCCCCCCCCEEEE
Q 014801 338 LVGRGIDIERVNIVIN 353 (418)
Q Consensus 338 ~l~~G~d~~~~~~vi~ 353 (418)
..- =.-++++..+|.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 421 233445666663
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.76 E-value=0.23 Score=50.22 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 359
>PRK04195 replication factor C large subunit; Provisional
Probab=94.74 E-value=0.22 Score=48.22 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 360
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.16 Score=46.59 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
...+++||||+|.+.. .....+.+.++.-+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~--~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--NAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhcCCCCceEEEEECC
Confidence 4678999999998864 3345566666665555555666533
No 361
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.72 E-value=0.23 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
+-+.+.||||+|||++....+...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 347899999999998765544333
No 362
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.70 E-value=0.057 Score=49.24 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=29.5
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+..+++++|+||||||||.. +-+++..+.... +++.+=.+.++
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~---rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQE---RLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCCCC---CEEEECCCccc
Confidence 34578999999999999964 445555554432 56666666654
No 363
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.65 E-value=0.13 Score=47.86 Aligned_cols=18 Identities=44% Similarity=0.516 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.+++|.||+|+|||.+.-
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 364
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.63 E-value=0.72 Score=41.24 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec-Cc-HHH-HHHHHHHHHHHhccCCCceEEEEE-cCcchHHHHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC-HT-REL-AYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKDL 152 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~-P~-~~l-~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (418)
++++|-.|+|||.+..- +..++...+ . ++++.+ .| |+- ++|+..+-++. ++.+.... |..+..
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~~g-~-~VllaA~DTFRAaAiEQL~~w~er~-----gv~vI~~~~G~DpAa----- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQQG-K-SVLLAAGDTFRAAAIEQLEVWGERL-----GVPVISGKEGADPAA----- 208 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHHCC-C-eEEEEecchHHHHHHHHHHHHHHHh-----CCeEEccCCCCCcHH-----
Confidence 68899999999987433 333333222 2 444444 33 333 34433333332 66655422 222211
Q ss_pred hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCc------cEEEEEecCCcc
Q 014801 153 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK------QVMMFSATLSKE 226 (418)
Q Consensus 153 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~------~~i~lSAT~~~~ 226 (418)
|+ ++.+... .-++++++++|=+-++.+..+....+..+.+...+.. -++.+=||...+
T Consensus 209 -------Va---fDAi~~A------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 209 -------VA---FDAIQAA------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -------HH---HHHHHHH------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 11 1111111 1256788999999999888788888888877765543 344457888766
Q ss_pred HHHHHHHh
Q 014801 227 IRPVCKKF 234 (418)
Q Consensus 227 ~~~~~~~~ 234 (418)
.-.-++.|
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 55544443
No 365
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.12 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
+..++.||.|+|||..+...+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999998765443333
No 366
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.14 Score=51.97 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=78.9
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHh
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 301 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~ 301 (418)
.+.+..+.|++++.....+-.+.+..- .......+..+.-...++++++.+|+...+.+.++.|.+
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTGv--------------GKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTGV--------------GKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CchHHHHHHHHHHHcCCceEEEcCCCC--------------chhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 344555778877765543322222110 112334555566666779999999999999999988876
Q ss_pred CC-----CCeEE-ecCCCCHHHHHHHHHhhhcCCccEEEEecc-cccCCCC-C--CCCEEEE
Q 014801 302 CN-----FPSIC-IHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDI-E--RVNIVIN 353 (418)
Q Consensus 302 ~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-l~~G~d~-~--~~~~vi~ 353 (418)
.. ..+.. +|+.++..+++..++.|.+|+.+|+|+|+. +..-++. . +.+.|+.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifV 209 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFV 209 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEE
Confidence 53 33333 899999999999999999999999999864 4443331 2 2455553
No 367
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.61 E-value=0.11 Score=48.10 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
|.-+++.|++|+|||...+-.+......+ .+++|+.-. +-..|+.....++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC-cCHHHHHHHHHHc
Confidence 45589999999999976544433333222 268888754 3345555444444
No 368
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.59 E-value=0.055 Score=44.45 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=27.0
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
..++++++.|++|+|||..+...+......+. .+++ ++..+|..+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~---~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGY---SVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc---ceeE-eecCceeccc
Confidence 34778999999999999876544444444222 4555 4445555543
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.57 E-value=0.67 Score=41.98 Aligned_cols=55 Identities=13% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhC------CCCccEEEEEecCCccHHHHHHHh
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMT------PHDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~------~~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
.++++||||=+-...........+..+.... .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 5678899999987654333334455444322 233357889999765433334443
No 370
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.56 E-value=0.027 Score=60.31 Aligned_cols=93 Identities=24% Similarity=0.369 Sum_probs=74.6
Q ss_pred eEEEEeCCchhHHHHHHHHHhCC-CCeEEecCCCC-----------HHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 281 QVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMS-----------QEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 281 ~~lif~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
-.++|++.+..+....+.+.... ..+..+.|.+. ...+.+++..|...++++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 56999999999998888876542 22222333221 2336778888999999999999999999999999
Q ss_pred CEEEEecCCCChhhhhhhcccccCC
Q 014801 349 NIVINYDMPDSADTYLHRVGRAGRF 373 (418)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (418)
+.++.++.+...+.|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 371
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.55 E-value=0.16 Score=47.06 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhhHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l 93 (418)
+..++.||.|+|||..+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999976543
No 372
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.46 E-value=0.31 Score=46.95 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+++.||+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999754
No 373
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.44 E-value=0.35 Score=45.79 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997653
No 374
>PF05729 NACHT: NACHT domain
Probab=94.44 E-value=0.27 Score=39.61 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=16.9
Q ss_pred EEEEccCCCchhhHHHHHhhhccC
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
++|.|+.|+|||..+...+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh
Confidence 689999999999765443333333
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.43 E-value=1.2 Score=36.41 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=15.7
Q ss_pred EEEEccCCCchhhHHHHHhhh
Q 014801 77 VICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~ 97 (418)
+++.|++|+|||......+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999875544433
No 376
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.40 E-value=0.087 Score=48.59 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEe
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 111 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii 111 (418)
+..++++||||||||.. +.++++.+.......+++.+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEE
Confidence 45689999999999975 34555555433222245554
No 377
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.36 E-value=0.42 Score=44.07 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhh-CCCCccEEEEEecCCcc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKE 226 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~~i~lSAT~~~~ 226 (418)
+...+|.+||.|.-. -.-...+.+++.. +..+.-+|+.|-++|.+
T Consensus 126 ~~~~lLcfDEF~V~D--iaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQVTD--IADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeeccc--hhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 345579999999431 1223334444433 34556677777777754
No 378
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.21 Score=49.46 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchhhHHHHHh
Q 014801 75 MDVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~ 95 (418)
+..++.||.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346899999999998765443
No 379
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.13 Score=44.85 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=31.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
++.++++.||+|+|||..+........ ..+ .-++++++.+++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g---~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG---ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC---CeEEEEEHHHHHHHHHHH
Confidence 578999999999999986544333333 322 345666667777765443
No 380
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.24 E-value=0.079 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
+..++|.||.|+|||.. +-.+....
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 36689999999999974 33444444
No 381
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.19 E-value=0.24 Score=51.48 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.+++|.+|+...+.+..+.+.+. +.++..+++..+..++..+++.+.+|+++|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999998887653 56777889999999999999999999999999996 455667788888877
Q ss_pred E
Q 014801 353 N 353 (418)
Q Consensus 353 ~ 353 (418)
+
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 382
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.19 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=16.3
Q ss_pred cEEEEccCCCchhhHHHHHhh
Q 014801 76 DVICQAKSGMGKTAVFVLSTL 96 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~ 96 (418)
..++.||.|.|||.++...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987654333
No 383
>PRK08506 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.25 Score=47.52 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH--
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 150 (418)
|.-++|.|.+|.|||..++-.+...+.. +.++++++. ..-..|+..++-.... +++...+ .|..+..++.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSL-EMPAEQLMLRMLSAKT---SIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 4558899999999997655444444322 225666654 3335555555433221 3322222 2222222221
Q ss_pred ----HHhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 151 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 151 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
..+.+ ..+.|- |++.+...+++.......+++||||-.+.+..
T Consensus 265 ~~a~~~l~~--~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 265 SDACDELSK--KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 11222 245542 45555544443211123578999999998864
No 384
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.06 E-value=0.21 Score=43.19 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+.-+++.|++|+|||..+...+...+..+. +++|+.-... ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~---~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGK---KVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCC---EEEEEEcCCC-HHHHHHHHHHC
Confidence 455899999999999766555554444322 6777775433 34555555554
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.99 E-value=0.3 Score=50.02 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=29.4
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh--hhcCCcEEEEccCCCchhhHH
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ--AILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~--~~~~~~~~v~~~tGsGKT~~~ 91 (418)
+...|.+.+-.+.+.+.+... +.-+..++. .+.. +...+.+++.||+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~-v~~~~~~~~-~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREA-VEWPLKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHH-HHhhhhCHH-HHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 445677766666666555532 100111111 1111 112456899999999999754
No 386
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.98 E-value=0.14 Score=47.23 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.+.-++|+||||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999753 44555553
No 387
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.94 E-value=0.17 Score=46.79 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.1
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPN 102 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~ 102 (418)
.|+.++|.||+|+|||..+. .+.+.+..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~-~i~~~I~~n 195 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ-KIAQAITRN 195 (415)
T ss_pred CCCEEEEECCCCCChhHHHH-HHHHhhccc
Confidence 48889999999999997543 345554443
No 388
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.94 E-value=0.28 Score=44.14 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
++++++.|++|+|||..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 389
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.89 E-value=0.35 Score=47.28 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=64.3
Q ss_pred CCCeEEEEeCCchhHH----HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAA----ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.++...+|+.-.|+ .+.++|...++.+..+.|.+....|+++++...+|+++++|+|. .+...+++.++..||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 5568888899865554 45666777799999999999999999999999999999999996 467899998888877
Q ss_pred E
Q 014801 353 N 353 (418)
Q Consensus 353 ~ 353 (418)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 390
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.4 Score=46.18 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.0
Q ss_pred EEEEccCCCchhhHHHHHh
Q 014801 77 VICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~ 95 (418)
.++.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997765433
No 391
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.39 Score=44.90 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
.+.+++||||+|.+.. .....+.+.++.-+... ++++++|-+
T Consensus 116 ~~~kViiIDead~m~~--~aanaLLk~LEep~~~~-~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTE--RAANALLKAVEEPPPRT-VWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCH--HHHHHHHHHhhcCCCCC-eEEEEECCh
Confidence 4678899999999865 33344555555544444 444444433
No 392
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.13 Score=52.13 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=55.6
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC-CCeeEEEecCcHHHHHHHHHHHHHHhc
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFST 130 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~ 130 (418)
.|++-|++++... ...++|.|+.|||||.+..--+...+.... ....++.++=|+-.+.++..++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999998765 678999999999999988777777665532 333688888888888888888888775
No 393
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.83 E-value=0.2 Score=44.10 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHH--
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 150 (418)
|.=++|.|.+|.|||..++-.+.+.+.... ..+++++.--. ..++..++-.... +++...+. |.....+..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~-~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMS-EEELAARLLARLS---GVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCC-HHHHHHHHHHHhh---cchhhhhhccccCHHHHHHH
Confidence 455899999999999766655555554432 26888875322 2233333322211 22221111 111111111
Q ss_pred ----HHhhcCCCcEEE-e----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 151 ----DLLKNECPQIVV-G----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 151 ----~~~~~~~~~i~v-~----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
..+... .+++ . |++.+...++........+++||||-.|.+..
T Consensus 93 ~~~~~~l~~~--~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 93 QAAAEKLSDL--PLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHTS--EEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHhhC--cEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 112222 3333 2 33455544443222226788999999999876
No 394
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.78 E-value=0.92 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
..+.++.||+|+|||..+-.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.74 E-value=0.6 Score=44.06 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.3
Q ss_pred EEEEccCCCchhhHHHHHhhh
Q 014801 77 VICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~ 97 (418)
++++|++|+|||.++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999876544444
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.74 E-value=0.16 Score=42.17 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 59 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.+.+.|.+.+..... +..+++.||||+|||..+ -.++..+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~ 50 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIP 50 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcC
Confidence 345677777766555 778999999999999753 33444443
No 397
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.71 E-value=0.48 Score=45.25 Aligned_cols=113 Identities=15% Similarity=0.079 Sum_probs=55.4
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH--
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 150 (418)
|.-++|.|++|+|||..++-.+...+...+ ..+++++.- .-..|+.+++..... ++....+ .|......+.
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlE-m~~~~i~~R~~~~~~---~v~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLE-MSAEQLAMRMLSSES---RVDSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCc-CCHHHHHHHHHHHhc---CCCHHHhccCCCCHHHHHHH
Confidence 455899999999999655444444333222 256776642 234444444433322 3322222 1222222111
Q ss_pred ----HHhhcCCCcEEE-----eccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 151 ----DLLKNECPQIVV-----GTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 151 ----~~~~~~~~~i~v-----~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
..+.+ ..+.| .|.+.+...++..... ..+++||||-.+.+..
T Consensus 269 ~~a~~~l~~--~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 269 TSAAGKLSE--APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 11222 24444 2445555433322111 2478999999998753
No 398
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.70 E-value=0.094 Score=47.72 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=27.5
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
..+++++|+|+||||||.. +-+++..+.... +++.+=.+.+
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip~~~---ri~tiEd~~E 198 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIPAIE---RLITVEDARE 198 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCCCCC---eEEEecCCCc
Confidence 3478999999999999964 445556555432 5655544443
No 399
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.67 E-value=0.35 Score=48.46 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
....+++||||+|.+.. .....+...+..-+....+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~--~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK--SAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCH--HHHHHHHHHhhcCCCceEEEEEc
Confidence 35678999999998865 23334444455444444344433
No 400
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.63 E-value=0.55 Score=46.21 Aligned_cols=30 Identities=27% Similarity=0.186 Sum_probs=20.6
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
..|+.+.+.||+|+|||.. +-++.......
T Consensus 359 ~~G~~vaIvG~SGsGKSTL--l~lL~g~~~p~ 388 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTL--LMLLTGLLDPL 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhcCCCCC
Confidence 3478899999999999974 33444443333
No 401
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.50 E-value=1.2 Score=43.36 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=75.6
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH-HhccCCCceEEEEEcCcchHHHHHHh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER-FSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
+-.+...|---|||.. +.+++..+..+-.+.++.+++..+..++-+.+++.. +...+|.-.+....++
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~---------- 271 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN---------- 271 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc----------
Confidence 3467778999999964 556666666666666899999998877776666542 2222322222222111
Q ss_pred hcCCCcEEEeccH-----HHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecC
Q 014801 154 KNECPQIVVGTPG-----RILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATL 223 (418)
Q Consensus 154 ~~~~~~i~v~T~~-----~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~ 223 (418)
.|.+.-|. .+..-.+.+...=+++++++|||+|-+. ...+..++..+ .++.++|++|.|-
T Consensus 272 -----tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~-----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 272 -----VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK-----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred -----EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC-----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 22222221 1122122333445678999999999543 34555555544 3567899999883
No 402
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.49 E-value=1.4 Score=41.02 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=47.1
Q ss_pred EEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH---HHHHHhccCCCceEEEEEcCcchHHHHHHhh
Q 014801 78 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH---EFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 154 (418)
Q Consensus 78 ~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (418)
++.++.|+|||......++..+...+....++++..+..+.....+ .+...................-. +.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------LP 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------ET
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------ec
Confidence 4778999999998877777776555543356666444444444222 22232222112222211111000 02
Q ss_pred cCCCcEEEeccHHH--HHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 155 NECPQIVVGTPGRI--LALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 155 ~~~~~i~v~T~~~l--~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
++ ..|.+.+.+.- ..-++. ..++++++||+-....
T Consensus 75 nG-~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 75 NG-SRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp TS--EEEEES-----SHHHHHT-----S--SEEEEESGGGSTT
T ss_pred Cc-eEEEEeccccccccccccc-----cccceeeeeecccCch
Confidence 33 34666554321 112222 4667899999886654
No 403
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.36 Score=46.15 Aligned_cols=39 Identities=10% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++||||+|.+.. .....+.+.++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~--~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK--EAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCH--HHHHHHHHHhhcCCCCceEEEEe
Confidence 4667899999998864 22344555555544455455444
No 404
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.47 E-value=1.8 Score=43.64 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=66.6
Q ss_pred CeEEEEeCCchhHHHHHHHHHhC-------CCCeEEecCCCCHHHHHHHHHhhhc--------CCccEEEEecccccCCC
Q 014801 280 NQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKE--------GNKRILVATDLVGRGID 344 (418)
Q Consensus 280 ~~~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~vlv~t~~l~~G~d 344 (418)
..+|+|.++....+++....... +.+-..+ .--+..+-.+++..|.+ |..-+.||-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 44999999988777764333221 1222222 22233344444555532 33345677789999999
Q ss_pred CCC--CCEEEEecCCC--------------------------------------ChhhhhhhcccccCCCCceeEEEEec
Q 014801 345 IER--VNIVINYDMPD--------------------------------------SADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 345 ~~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
+.+ .+.||..+.|. ..+.+-|.+||+.|..++-..+++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 986 56788877664 12335699999999877777777777
Q ss_pred CC
Q 014801 385 SA 386 (418)
Q Consensus 385 ~~ 386 (418)
..
T Consensus 721 ~R 722 (945)
T KOG1132|consen 721 DR 722 (945)
T ss_pred ch
Confidence 43
No 405
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.44 E-value=0.56 Score=46.58 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=23.9
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEE
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 110 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~li 110 (418)
+..|+.+.++||+|+|||.. +.++........+ ++++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl--~~LL~r~~~~~~G-~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL--IKLLLRLYDPTSG-EILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccCCCCCC-eEEE
Confidence 44578899999999999864 3344444433333 4555
No 406
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.42 E-value=1.2 Score=35.72 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=71.6
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH-HHHHHHHhccCCCceEEEEEcCcc-----hHHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFSTYLPDIKVAVFYGGVN-----IKIHK 150 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 150 (418)
+.|-.++|.|||.+++-.+++.+..+. +++++-=.+.-...- ...++++ +++.+...-.+.. .....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHHH
Confidence 456678899999998888888877655 566632111100000 1112222 3444444222111 01000
Q ss_pred HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCHHHHHHHHhhCCCCccEEEEEecCCccHHH
Q 014801 151 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 229 (418)
Q Consensus 151 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (418)
.. ....+.... ..+....+++||+||+-..... .--...+..++...+....+|+.+-.+|.++..
T Consensus 78 ~~------------a~~~~~~a~-~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 78 AA------------AAEGWAFAK-EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred HH------------HHHHHHHHH-HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00 011111111 1122457899999999877542 223456777788777777777777777766555
Q ss_pred HHH
Q 014801 230 VCK 232 (418)
Q Consensus 230 ~~~ 232 (418)
.++
T Consensus 145 ~AD 147 (159)
T cd00561 145 AAD 147 (159)
T ss_pred hCc
Confidence 443
No 407
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.41 E-value=0.71 Score=37.84 Aligned_cols=39 Identities=8% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCcc
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 226 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~ 226 (418)
+..++++++.-+-++.. .+...+ .....++.+|.|-..+
T Consensus 94 ~~~~Dll~iEs~GNL~~--~~sp~L-------~d~~~v~VidvteGe~ 132 (202)
T COG0378 94 FPDLDLLFIESVGNLVC--PFSPDL-------GDHLRVVVIDVTEGED 132 (202)
T ss_pred CCcCCEEEEecCcceec--ccCcch-------hhceEEEEEECCCCCC
Confidence 34478899888875554 222222 2234678888886543
No 408
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.36 E-value=0.046 Score=47.21 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=12.1
Q ss_pred EEEEccCCCchhhH
Q 014801 77 VICQAKSGMGKTAV 90 (418)
Q Consensus 77 ~~v~~~tGsGKT~~ 90 (418)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 409
>PRK05973 replicative DNA helicase; Provisional
Probab=93.32 E-value=0.18 Score=43.25 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=37.1
Q ss_pred hHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 67 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 67 ~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
...-+..|.-++|.|++|+|||..++-.+...+..+. +++|++-- +-..|+.+++..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEEEEe-CCHHHHHHHHHHc
Confidence 3344455677999999999999766555555544322 67777643 3346666666655
No 410
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.25 E-value=0.041 Score=48.93 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=42.4
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
+.-.++-|..=+.++..+.-++-.||-|+|||+.+...+...+..+.-. ++|.-=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4557889999888888888888999999999987776666666655443 5555545
No 411
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.25 E-value=0.31 Score=47.34 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=29.5
Q ss_pred cCCCccCCCCCHHHHHHHHHC--CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 35 HSSGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~--~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
+..+|++..-.+...+.+... -+..+..++... ....+.+++.||+|+|||+.+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 345677776655555544421 011122222211 112356999999999999754
No 412
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.22 E-value=0.33 Score=51.76 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.+++|.+|+.+.+.++++.+.+. +..+..+++..+..++..+++...+|.++|+|+|. .+...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999998888753 45677788989999999999999999999999996 455556677777777
Q ss_pred E
Q 014801 353 N 353 (418)
Q Consensus 353 ~ 353 (418)
+
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.3 Score=48.52 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=26.4
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+...+++||||+|.+.. .....+...++..+....+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45778999999998864 33455666666655555444444
No 414
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.18 E-value=0.12 Score=44.75 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
|..++|.|++|+|||..++-.+...+..+. ++++++- .+-..|..+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHh
Confidence 566899999999999766555555553332 6788874 34455666655554
No 415
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.11 E-value=1.3 Score=36.50 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=75.9
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 151 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (418)
.....+.+..++|.|||.+++-.+++.+..+. +++++-=.+.-.. ..+...+.. .+++.+.....+.....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~--~GE~~~l~~-l~~v~~~~~g~~~~~~~--- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWS--TGERNLLEF-GGGVEFHVMGTGFTWET--- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCc--cCHHHHHhc-CCCcEEEECCCCCcccC---
Confidence 34567999999999999998888888877665 5666542221101 112222211 12444333221111000
Q ss_pred HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCC--HHHHHHHHhhCCCCccEEEEEecCCccHHH
Q 014801 152 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIRP 229 (418)
Q Consensus 152 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (418)
.. .+--.......+..... .+.-..+++||+||+-...+ .++ ...+..++...+....+|+..-.+|.++..
T Consensus 91 ---~~-~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~-~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ---QD-RERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALK-YGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ---CC-cHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHH-CCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00 00000001111211111 12235688999999987776 333 355777777777776666665556666555
Q ss_pred HHHH
Q 014801 230 VCKK 233 (418)
Q Consensus 230 ~~~~ 233 (418)
.++.
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 4443
No 416
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.10 E-value=0.54 Score=40.88 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=21.3
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
+-.|+.+++.||.|+|||.. +-.+.+.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 34588999999999999964 3334444443
No 417
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.71 Score=44.62 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCccCCCCCHHHHHHHHHC--CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 36 SSGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~--~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
..+|.++|=-......|... .+..|..++.-.+ .--+.++++||+|.|||..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 34577776444444444332 2445555555332 22467999999999999743
No 418
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=1.4 Score=40.79 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.6
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
.++++-|+||+|||.+.- .+++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 459999999999997643 44444443
No 419
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.074 Score=46.78 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
..++++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356999999999999754
No 420
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.93 E-value=0.44 Score=36.16 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=32.0
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEe-----cCcHHHHHHHHHHHHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL-----CHTRELAYQICHEFERF 128 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii-----~P~~~l~~q~~~~~~~~ 128 (418)
+.+.|+||+|||++.-+.+-.....+-+..-+... .|....+.+..++++.+
T Consensus 56 lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 34799999999998877666555444333233332 25556666666666554
No 421
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.92 E-value=0.25 Score=43.44 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=31.2
Q ss_pred CcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 60 PSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 60 l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
+.+.|.+.+..++. +..+++.|+||||||... .+++..+.... .+++.+=.
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~--~~iitiEd 116 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPE--KNIITVED 116 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCC--CeEEEECC
Confidence 35667766666554 345899999999999753 44555554322 14555443
No 422
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=0.51 Score=43.11 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
....+++||||+|.+.. .....+.+.++.-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEEEeC
Confidence 35678999999998865 345566666666666665555444
No 423
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.86 E-value=0.37 Score=44.40 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
|+..+|.||.|+|||..+ -.+.+.+..
T Consensus 169 GQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 788999999999999643 334444443
No 424
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.44 Score=45.20 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=27.0
Q ss_pred CccEEEEechhhhccCCCCHHH------HHHHH---hhCCCCccEEEEEecCCc
Q 014801 181 NVRHFILDECDKMLESLDMRRD------VQEIF---KMTPHDKQVMMFSATLSK 225 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~------~~~~~---~~~~~~~~~i~lSAT~~~ 225 (418)
...+|+|||.+.+.+....+.. +..++ +-+..+-.+|.+.||--+
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 4567999999988764322211 22222 233445579999999543
No 425
>PRK08006 replicative DNA helicase; Provisional
Probab=92.82 E-value=1 Score=43.29 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=57.3
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKD 151 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (418)
.|.-++|.|-+|.|||..++-.+...+... +..++|+..- --..|+..++-.... ++....+. |..+..++..
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~e~~~ 296 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIRTGQLDDEDWAR 296 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHH
Confidence 345588899999999965444333333221 1256666532 334455444433221 33332222 3333333222
Q ss_pred ------HhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 152 ------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 152 ------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
.+.. ...+.|- |++.+....++-......+++||||=.|.+..
T Consensus 297 ~~~a~~~~~~-~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 350 (471)
T PRK08006 297 ISGTMGILLE-KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRV 350 (471)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccC
Confidence 1211 2345543 45555444432211123578999999998853
No 426
>PRK07004 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.48 Score=45.39 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=55.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH--
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 150 (418)
|.-++|.|.+|+|||..++-.+...+...+ . .++++.. ..-..|+..++-.... ++....+ .|..+..++.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~-~-~v~~fSl-EM~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYG-L-PVAVFSM-EMPGTQLAMRMLGSVG---RLDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcC-C-eEEEEeC-CCCHHHHHHHHHHhhc---CCCHHHHhcCCCCHHHHHHH
Confidence 555889999999999654433333322211 1 4666653 2234444444322111 2222222 2222322222
Q ss_pred ----HHhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 151 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 151 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
..+.+ ..+.|. |+..+....++-......+++||||-.+.+..
T Consensus 287 ~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 287 THAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 11222 356552 44444443332211223578999999998864
No 427
>PHA00012 I assembly protein
Probab=92.80 E-value=0.93 Score=40.53 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=21.8
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
.++.|-.|+|||+.+...+...+.++.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCC
Confidence 478999999999988877777776553
No 428
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.78 E-value=1.1 Score=45.64 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
..+.++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 429
>PRK09165 replicative DNA helicase; Provisional
Probab=92.74 E-value=0.82 Score=44.34 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCC------------CCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPN------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF- 140 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~- 140 (418)
|.-++|.|.+|+|||..++-.+.+..... ..+.+++|+.. ..-..|+..++..... +++...+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s---~v~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS---EISSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHh
Confidence 45589999999999975544333332210 11235666654 3334555555443322 3322222
Q ss_pred EcCcchHHHHH------HhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 141 YGGVNIKIHKD------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 141 ~~~~~~~~~~~------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
.|..+..++.. .+.. ..+.|. |.+.+....++.... ..+++||||=.|.+..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~--~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK--LPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhccC
Confidence 22222222211 1111 245543 445554444432211 3578999999998864
No 430
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.74 E-value=0.057 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=25.6
Q ss_pred CcEEEeccHHHHHHHhcCCC--CCCCccEEEEechhhhcc
Q 014801 158 PQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLE 195 (418)
Q Consensus 158 ~~i~v~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~~~~ 195 (418)
++|+|+++..++.-...... ...+-.+|||||||.+.+
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 59999999998763322221 123456899999999865
No 431
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.73 E-value=0.15 Score=47.75 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=33.5
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
++++.||||+|||..++++.+.... ..++++=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----CCEEEEccchhHHHHHHHHHHH
Confidence 4789999999999887665544322 1578888888888766655544
No 432
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.53 Score=42.49 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHh---HHh-hhcCCcEEEEccCCCchhhHH
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHEC---IPQ-AILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~---~~~-~~~~~~~~v~~~tGsGKT~~~ 91 (418)
-+|.+.|=-+.+++.+...-+ -|.|..- ... +...+.+++-+|+|+|||+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 357777777777777775522 2222211 112 223577999999999999764
No 433
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.67 E-value=2.2 Score=34.65 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=64.4
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcC
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 156 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (418)
+.|-...|-|||.+++-.+++.+..+. +++++-=.+.-. ...+...+. .++++.+...-.+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~~--~~GE~~~l~-~l~~~~~~~~g~~f~~~~~~~~---- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGGR--YSGELKALK-KLPNVEIERFGKGFVWRMNEEE---- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--SS----HHHHHHG-GGT--EEEE--TT----GGGHH----
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCCC--CcCHHHHHH-hCCeEEEEEcCCcccccCCCcH----
Confidence 456667899999999888888887766 677765444311 122233332 2224444332111110000000
Q ss_pred CCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCC--HHHHHHHHhhCCCCccEEEEEecCCccHHHHHH
Q 014801 157 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 157 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (418)
.+ ....+..+..... .+.-..+++||+||+-...+ .++ ...+..++...+....+|+..-.+|+.+...+.
T Consensus 76 -~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~-~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 -ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVD-YGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHH-TTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred -HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhH-CCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 01 0011111222111 12235789999999987776 343 345777777777777666666666666555443
No 434
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.62 E-value=1.1 Score=40.31 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHh-hCCCCccEEEEEecCCcc
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDKQVMMFSATLSKE 226 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~-~~~~~~~~i~lSAT~~~~ 226 (418)
.+.+++.|||.|-- + -.-...+.++++ .+..++.+++.|-|.|++
T Consensus 129 ~~~~vLCfDEF~Vt-D-I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 129 AETRVLCFDEFEVT-D-IADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred hcCCEEEeeeeeec-C-hHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 35567999999932 1 122222333332 345678888889888765
No 435
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.58 E-value=0.48 Score=42.82 Aligned_cols=55 Identities=24% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCcHHHHHhHHhhh-cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 59 HPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~-~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
.+.+.|..-++.+. .+++++++|+||||||.. +.+++..+.... +++.+=-+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEeccccc
Confidence 45566655555544 488999999999999964 566666665444 56666655543
No 436
>PF12846 AAA_10: AAA-like domain
Probab=92.58 E-value=0.12 Score=46.59 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
+.+++|.|+||+|||..+...+...+..+. .++++=|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~---~~~i~D~~g 39 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP---RVVIFDPKG 39 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC---CEEEEcCCc
Confidence 467899999999999876644444444443 566665543
No 437
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.56 E-value=1 Score=46.88 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
..+.++.||+|.|||.++-.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 34799999999999976543
No 438
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.53 E-value=3.3 Score=37.22 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhH
Q 014801 74 GMDVICQAKSGMGKTAV 90 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~ 90 (418)
++++++.||-|||||..
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 56799999999999964
No 439
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=1.1 Score=42.50 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHhHHh----hhc---C-----CcEEEEccCCCchhhH
Q 014801 41 DFLLKPELLRAIVDSGFEHPSEVQHECIPQ----AIL---G-----MDVICQAKSGMGKTAV 90 (418)
Q Consensus 41 ~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~----~~~---~-----~~~~v~~~tGsGKT~~ 90 (418)
.||.+++-.+.+...|+....+.=.+.+.. +.+ . .++++.||.|+|||..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL 554 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH
Confidence 578888888888888776544443333322 111 1 2489999999999953
No 440
>PRK10436 hypothetical protein; Provisional
Probab=92.44 E-value=0.27 Score=46.82 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=27.8
Q ss_pred CcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 60 PSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 60 l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
+.+.|.+.+..+.. +.-++++||||||||... .+++..+..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 35566666666554 445899999999999764 455555543
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.44 E-value=0.13 Score=45.51 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=29.0
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
..+.+++++|+||||||... .+++..+... ..+++.+-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 34678999999999999753 5556665554 1267777665543
No 442
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.40 E-value=0.27 Score=47.35 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred CcHHHHHhHHhhhcCC--cEEEEccCCCchhhHHHHHhhhccCC
Q 014801 60 PSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 60 l~~~Q~~~~~~~~~~~--~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
+.+.|.+.+..+.... -++++||||||||... .+++..+..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~ 268 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT 268 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC
Confidence 3667777777766533 3789999999999764 445565543
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.27 E-value=0.17 Score=42.39 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=22.4
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
++++||||||||... ..++..+.....+ +++.+-..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~~~-~i~t~e~~ 39 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNKTH-HILTIEDP 39 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcCCc-EEEEEcCC
Confidence 689999999999764 3445555433222 45555443
No 444
>CHL00176 ftsH cell division protein; Validated
Probab=92.17 E-value=0.54 Score=46.89 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
+.+++.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999754
No 445
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.17 E-value=0.11 Score=44.62 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
|..++|.|++|+|||..++-.+.+.+.. +. ++++++-. +-..++.+.++.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 5669999999999997666555555544 33 67887743 3335555555544
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.06 E-value=0.86 Score=44.14 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=39.7
Q ss_pred HhHHhhhc-----CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 66 ECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 66 ~~~~~~~~-----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
..++.++. |.-++|.+|+|+|||...+-.+...+..+. +++|++ ..+-..|+.+.++.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKE---RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEE-eeCCHHHHHHHHHHc
Confidence 34455454 456899999999999876655555554332 678877 455667777777665
No 447
>PRK06904 replicative DNA helicase; Validated
Probab=92.03 E-value=0.78 Score=44.11 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=57.3
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEE-c-CcchHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-G-GVNIKIHK 150 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 150 (418)
.|.=++|.|-+|.|||..++-.+...+... +..++|++. .--..|+..++-.... ++....+. | ..+..++.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSL-EMPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHHHH
Confidence 345588899999999975433333333221 125666654 3334555544433321 33332222 2 22222221
Q ss_pred H------HhhcCCCcEEE-----eccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 151 D------LLKNECPQIVV-----GTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 151 ~------~~~~~~~~i~v-----~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
. .+.. ...+.| .|++.+....++.......+++||||-.+.+..
T Consensus 294 ~~~~a~~~l~~-~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 294 KISSTVGMFKQ-KPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 1 1211 234666 355555544432211123578999999998753
No 448
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.01 E-value=0.63 Score=47.71 Aligned_cols=19 Identities=26% Similarity=0.259 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.++.+++.||+|+|||+.+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3577999999999999753
No 449
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.01 E-value=1.1 Score=41.64 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhhHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l 93 (418)
+.+++.||.|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976543
No 450
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.99 E-value=1.3 Score=38.26 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
.-++++|+|||||+.. +.+++.+-.++.
T Consensus 128 GLviiVGaTGSGKSTt-mAaMi~yRN~~s 155 (375)
T COG5008 128 GLVIIVGATGSGKSTT-MAAMIGYRNKNS 155 (375)
T ss_pred ceEEEECCCCCCchhh-HHHHhcccccCC
Confidence 3478899999999975 333444433333
No 451
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.99 E-value=0.46 Score=43.50 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=38.8
Q ss_pred HHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 49 LRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 49 ~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
++.+...|+ +.+.+.+.+..+.. +.+++++|+||+|||.. +-.++..+.... +++.+-.+.++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~~~---riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAPDE---RIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCCCC---cEEEECCccee
Confidence 444444444 44666676666555 67899999999999964 333444444322 56666555554
No 452
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.97 E-value=2 Score=34.83 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=70.1
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcc-----hHHHH
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN-----IKIHK 150 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 150 (418)
-+.+..++|.|||.+++-.+++.+..+. +++++-=.+.-.. ..+...+.. . ++.+.....+.. .+...
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~--~GE~~~l~~-~-~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWP--NGERAAFEP-H-GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcc--cChHHHHHh-c-CcEEEECCCCCeecCCCcHHHH
Confidence 3677888999999998887888776655 5655521111000 011111111 1 333333222111 01000
Q ss_pred HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCC--HHHHHHHHhhCCCCccEEEEEecCCccHH
Q 014801 151 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIR 228 (418)
Q Consensus 151 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (418)
.. ....+..... .+.-..+++||+||+-...+ .++ ...+..++...+....+|+..-.+|..+.
T Consensus 80 ~~------------~~~~~~~a~~-~l~~~~~DlvVLDEi~~A~~-~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~ 145 (173)
T TIGR00708 80 AI------------AKAAWQHAKE-MLADPELDLVLLDELTYALK-YGYLDVEEVVEALQERPGHQHVIITGRGCPQDLL 145 (173)
T ss_pred HH------------HHHHHHHHHH-HHhcCCCCEEEehhhHHHHH-CCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHH
Confidence 00 1111211111 12235788999999987765 232 34567777777777766666666666655
Q ss_pred HHHHH
Q 014801 229 PVCKK 233 (418)
Q Consensus 229 ~~~~~ 233 (418)
..++.
T Consensus 146 e~AD~ 150 (173)
T TIGR00708 146 ELADL 150 (173)
T ss_pred HhCce
Confidence 54443
No 453
>PRK13764 ATPase; Provisional
Probab=91.93 E-value=0.26 Score=48.40 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
+++++++||||||||... -+++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 677999999999999753 44555554
No 454
>PRK05748 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.66 Score=44.50 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=54.8
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH--
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 150 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 150 (418)
|.-++|.|.+|+|||..++-.+...+...+ ..++++.. ..-..|+..++-.... ++....+ .|..+..++.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSl-Ems~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSL-EMGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeC-CCCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 456899999999999755444433332222 15666653 3334555554432211 2222211 1222222221
Q ss_pred ----HHhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 151 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 151 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
..+.+ ..+.|. |++.+...+++......++++||||-.|.+.
T Consensus 277 ~~a~~~l~~--~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 277 TIAMGSLSD--APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 11222 245543 4455544333211111257899999999875
No 455
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.82 E-value=1.6 Score=37.55 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=21.8
Q ss_pred hhcCC-cEEEEccCCCchhhHHHHHhhhccCCCC
Q 014801 71 AILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNP 103 (418)
Q Consensus 71 ~~~~~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~ 103 (418)
+..++ -+.++|+.|||||...- ++......+.
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~ 79 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQ 79 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhcCCCc
Confidence 33455 58899999999998755 4555554433
No 456
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.80 E-value=0.59 Score=44.97 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+++.||+|+|||+.+
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999764
No 457
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.79 E-value=2.4 Score=44.36 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..+.++.||+|.|||.++-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997654
No 458
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.78 E-value=0.29 Score=50.91 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCcc-EEEEecccccCCCCCCCCEEEEecCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR-ILVATDLVGRGIDIERVNIVINYDMP 357 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~t~~l~~G~d~~~~~~vi~~~~~ 357 (418)
-.++|+|+.-......+...+...++....-.+ .++-...+.-|.+ ++ +++-+...+-|+|+-.+.||+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 368899988777777777777666655544333 2333334444554 54 44567889999999999999999999
Q ss_pred CChhhhhhhcccccCCCCceeEE
Q 014801 358 DSADTYLHRVGRAGRFGTKGLAI 380 (418)
Q Consensus 358 ~s~~~~~Q~~GR~~R~~~~g~~~ 380 (418)
.++..-.|.+||+.|.||+...+
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchh
Confidence 99999999999999999875544
No 459
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.69 E-value=0.25 Score=53.00 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=46.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCC--CCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~--~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
.+++++|.|..|||||++....+++.+... -...++|+++-|+.-+.++..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 467899999999999999888888887763 34558999999999999888877643
No 460
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.68 E-value=2.2 Score=44.68 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=94.5
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhcc------------------------------CCCCCCeeEEEe
Q 014801 62 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT------------------------------EPNPGQVTALVL 111 (418)
Q Consensus 62 ~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~------------------------------~~~~~~~~~lii 111 (418)
--|++-+..+..+-+++=...|=.-.|+-+.+.-++.+ .+-.++.++.||
T Consensus 730 Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv 809 (1139)
T COG1197 730 VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYV 809 (1139)
T ss_pred ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEE
Confidence 34667777777777777777777777764443333221 001123389999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEe
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 188 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 188 (418)
.|..+-..+..+.++.+. |..++.+.+|-....+.. ..+.++.+||+|||. +. ..+++..+-..||||
T Consensus 810 ~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT--II----EtGIDIPnANTiIIe 880 (1139)
T COG1197 810 HNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT--II----ETGIDIPNANTIIIE 880 (1139)
T ss_pred ecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee--ee----ecCcCCCCCceEEEe
Confidence 999999999999888876 688999999987755443 446678899999992 22 456788899999999
Q ss_pred chhhhccCCCCHHHHHHHHhhCCC
Q 014801 189 ECDKMLESLDMRRDVQEIFKMTPH 212 (418)
Q Consensus 189 E~h~~~~~~~~~~~~~~~~~~~~~ 212 (418)
.||++.- ..+..+..+.+.
T Consensus 881 ~AD~fGL-----sQLyQLRGRVGR 899 (1139)
T COG1197 881 RADKFGL-----AQLYQLRGRVGR 899 (1139)
T ss_pred ccccccH-----HHHHHhccccCC
Confidence 9997642 344555555443
No 461
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.66 E-value=0.31 Score=48.07 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=27.9
Q ss_pred CcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 60 PSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 60 l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
+.+.|.+.+..+.. +.-++++||||||||.+. ..++..+.
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 35667767766555 345789999999999764 45666654
No 462
>PHA00350 putative assembly protein
Probab=91.65 E-value=3.8 Score=38.16 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=18.7
Q ss_pred EEEEccCCCchhhHHHH-HhhhccCCC
Q 014801 77 VICQAKSGMGKTAVFVL-STLQQTEPN 102 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l-~~~~~~~~~ 102 (418)
.++.|..|||||+.++- .++..+.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987764 355555444
No 463
>PRK05595 replicative DNA helicase; Provisional
Probab=91.58 E-value=0.82 Score=43.75 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHHH-
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHKD- 151 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 151 (418)
|.-++|.|.||.|||..++-.+...+... +.+++++..- .-..|+..++-.... ++....+ .|..+..++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlE-ms~~~l~~R~~a~~~---~v~~~~~~~~~l~~~e~~~~ 274 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLE-MSKEQLAYKLLCSEA---NVDMLRLRTGNLEDKDWENI 274 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecC-CCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 44578899999999975544333322221 1256776542 234445444333221 2322222 12222222211
Q ss_pred -----HhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 152 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 152 -----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
.+.. ..+.|- |++.+....++.... ..+++||||-.|.+..
T Consensus 275 ~~~~~~l~~--~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~~~ 325 (444)
T PRK05595 275 ARASGPLAA--AKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhccC
Confidence 1111 234442 334444333322111 3578999999998864
No 464
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.55 E-value=1.1 Score=40.54 Aligned_cols=53 Identities=8% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 166 GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
..+...+..... ....+++|||++|.+.. .....+.+.++.-+ ...+|++|..
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 344444443322 35788999999998864 44556666666655 5545555443
No 465
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.53 E-value=1.1 Score=39.48 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=34.6
Q ss_pred ccEEEEechhhhccCCCCHHHHHHHHhhCC-------CCccEEEEEecCCccHHHHHHHhcC
Q 014801 182 VRHFILDECDKMLESLDMRRDVQEIFKMTP-------HDKQVMMFSATLSKEIRPVCKKFMQ 236 (418)
Q Consensus 182 ~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-------~~~~~i~lSAT~~~~~~~~~~~~~~ 236 (418)
-++.|+||++.+.. +....+.-++++.+ ...-.|++|.+-..++...+..+..
T Consensus 179 rslFIFDE~DKmp~--gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPP--GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred CceEEechhhhcCH--hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 35699999998864 55555655555322 2235788998887776666555443
No 466
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=0.27 Score=48.37 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=30.3
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEE-ecCcHHHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV-LCHTRELAYQICH 123 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~li-i~P~~~l~~q~~~ 123 (418)
..|+.+.++||.|+|||.++ .++.+.+....+ ++++ =+|-+++-.+|.+
T Consensus 492 ~pGe~vALVGPSGsGKSTia--sLL~rfY~PtsG-~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIA--SLLLRFYDPTSG-RILLDGVPISDINHKYLR 541 (716)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhcCCCCC-eEEECCeehhhcCHHHHH
Confidence 44888999999999999864 445555544434 3332 3455555444433
No 467
>PRK08840 replicative DNA helicase; Provisional
Probab=91.42 E-value=0.83 Score=43.79 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=57.2
Q ss_pred hHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEE-EcCcc
Q 014801 67 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVN 145 (418)
Q Consensus 67 ~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~ 145 (418)
.+.-+..|.-++|.|.+|.|||..++-.+...+... +..++|+..- --..|+..++-.... ++....+ .|..+
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~~~l~ 283 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRMLASLS---RVDQTKIRTGQLD 283 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHHhcCCCC
Confidence 333333455688899999999975543333333221 2256666542 224455444332221 2322222 22223
Q ss_pred hHHHHH------HhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 146 IKIHKD------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 146 ~~~~~~------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
..++.. .+... ..+.|- |...+....++.......+++||||-.|.+.
T Consensus 284 ~~e~~~~~~a~~~l~~~-~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 284 DEDWARISSTMGILMEK-KNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222222 12111 245543 3444444333221112357899999999875
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.34 E-value=0.52 Score=37.31 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=19.7
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCC
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPN 102 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~ 102 (418)
..+++.|++|+|||.. +.-+...+...
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc
Confidence 4589999999999975 45555555544
No 469
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.34 E-value=0.55 Score=40.90 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
.++++.||+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 46999999999999754
No 470
>PRK05636 replicative DNA helicase; Provisional
Probab=91.31 E-value=1.4 Score=42.67 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHHH-
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKD- 151 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 151 (418)
|.-++|.|.+|.|||..++-.+...+.+.+ ..++++.. ..-..|+..++-.... +++...+. |..+..++..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSl-EMs~~ql~~R~ls~~s---~v~~~~i~~g~l~~~e~~~~ 338 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSL-EMSKSEIVMRLLSAEA---EVRLSDMRGGKMDEDAWEKL 338 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEe-eCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 444788999999999655433333332221 14666642 2223444433322211 22222222 2222222211
Q ss_pred -----HhhcCCCcEEEe-----ccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 152 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 152 -----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
.+.+ ..+.|. |.+.+....++.... ..+++||||-.|.+..
T Consensus 339 ~~a~~~l~~--~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 339 VQRLGKIAQ--APIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMSS 389 (505)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1212 245553 334444433321111 3578999999998863
No 471
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.30 E-value=1.6 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchhhHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLS 94 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~ 94 (418)
..+.++.||+|.|||.++-..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHH
Confidence 457999999999999765433
No 472
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.28 E-value=3.3 Score=33.85 Aligned_cols=142 Identities=17% Similarity=0.161 Sum_probs=71.0
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHH-HHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC-HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
++|.-..|-|||.+++-.+++.+..+. +++++-=-+.-...-. ..+..+. . .+....+..+...+.+..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~~--~-~v~~~~~~~g~tw~~~~~---- 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKFG--L-GVEFHGMGEGFTWETQDR---- 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhhc--c-ceeEEecCCceeCCCcCc----
Confidence 677778888999999888888887765 5555532111111111 1122220 0 222222211111110000
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCC--HHHHHHHHhhCCCCccEEEEEecCCccHHHHHHH
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 233 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (418)
..++ ......+.... ..+.-.++++||+||+-.... .++ ...+..++...+....+|+..-..|..+...+..
T Consensus 101 -~~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~-~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 101 -EADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALR-YGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred -HHHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHH-cCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 0011 11111111111 112224688999999987665 333 3556777777777777776666666665555544
No 473
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.27 E-value=0.3 Score=47.22 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=35.2
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
.++++.||||||||..++++.+-... . .+++.=|.-+|...+....++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---~--s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---G--SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---C--CEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999888776653321 1 4777778888877666555544
No 474
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.23 E-value=0.47 Score=41.71 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
|.-++|.|++|+|||..++-.+...+..+. +++|+.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEEe
Confidence 456899999999999766655555444322 6777773
No 475
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.19 E-value=0.18 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+..+++.+++|+|||.++
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346999999999999743
No 476
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.15 E-value=0.29 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=25.6
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
-+++|.|++|||||.. ++.++..+.... ..+++++|.
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEecC
Confidence 3689999999999964 555565554433 256777773
No 477
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.02 E-value=0.26 Score=42.26 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~~ 115 (418)
|.-+.|.|++|+|||..++..+....... ....+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 55689999999999987665554443332 0112677777643
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.00 E-value=0.34 Score=44.54 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
+..++++||||||||... ..++..+...... +++.+-...+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~-~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAAG-HIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCCC-EEEEEcCChh
Confidence 567899999999999754 4455555433222 5666554444
No 479
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.89 E-value=1.5 Score=46.38 Aligned_cols=44 Identities=9% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
..--+||+|++|.+.+ ......+..+....+....+|+.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~-~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITN-PEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCC-hHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3445799999998864 4445577777888888888888876644
No 480
>PRK04328 hypothetical protein; Provisional
Probab=90.83 E-value=0.34 Score=42.31 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
|..++|.|++|+|||..++-.+...+..+. +++|+.- .+-..+..+.++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEEe-eCCHHHHHHHHHHc
Confidence 566899999999999765555555444433 5677763 33344455555554
No 481
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.79 E-value=0.28 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred HhHHhhhcCCcEEEEccCCCchhhHHHH
Q 014801 66 ECIPQAILGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 66 ~~~~~~~~~~~~~v~~~tGsGKT~~~~l 93 (418)
+++..+..+.++++.||+|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3444455688999999999999986543
No 482
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.79 E-value=2.7 Score=41.92 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
+-+++.||+|+|||.++
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34899999999999754
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.79 E-value=0.45 Score=43.00 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=20.4
Q ss_pred hhcCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 71 AILGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
+..+.+++++||||||||... -+++..+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCC
Confidence 334789999999999999743 33444443
No 484
>PHA02114 hypothetical protein
Probab=90.77 E-value=0.92 Score=32.03 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=51.6
Q ss_pred EEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCC
Q 014801 79 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 158 (418)
Q Consensus 79 v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (418)
+.-..|.|||.-++-.+....... .++++.. .+--..+.+++..+....|.+.-..... .
T Consensus 4 ilrta~~gkt~eaiksa~~aa~~h----~vm~vs~-~~~~t~i~~r~n~fs~enpaiqnry~i~---------------t 63 (127)
T PHA02114 4 ILRTANAGKTQEAIKSAFEAAQHH----EVMFVSD-EEPYTEILRRLNAFSSENPAIQNRYIIS---------------T 63 (127)
T ss_pred EeeecCCcccHHHHHHHHHHhccC----ceEEEcC-CCCHHHHHHHHHHhhccChhhcceeEEE---------------E
Confidence 444578999977665555555433 3566553 3333445566777765544332211111 1
Q ss_pred cEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 159 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 159 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
-+.=+||++|.++ -.++.++.||+|=--.++
T Consensus 64 ~v~patpemf~dl-----~~fd~~gtivldvn~ams 94 (127)
T PHA02114 64 CVEPATPEMFDDL-----GAFDQYGTIVLDVNYAMS 94 (127)
T ss_pred eecCCCHHHHhhh-----hhHhhcCeEEEEehhhhc
Confidence 2334688888764 246778889999665554
No 485
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.72 E-value=0.28 Score=44.69 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-+++.||.|.|||+.+
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 3788999999999864
No 486
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.65 E-value=0.44 Score=47.07 Aligned_cols=49 Identities=22% Similarity=0.079 Sum_probs=37.6
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
.++++.||||||||..++++-+-.... .++++=|.-++...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~-----S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED-----SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC-----CEEEEeCcHHHHHHHHHHHHHC
Confidence 468999999999999888777765421 4788888888888777666554
No 487
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.59 E-value=0.36 Score=40.24 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=24.8
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCC
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ 105 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~ 105 (418)
..|.-++++||.|||||+ ++-.++.+..-..+
T Consensus 26 ~~Gevv~iiGpSGSGKST--lLRclN~LE~~~~G 57 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST--LLRCLNGLEEPDSG 57 (240)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHCCcCCCCc
Confidence 346678999999999997 56777777665554
No 488
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.58 E-value=0.56 Score=50.68 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=44.6
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
..+++|.|+.|||||.+..-.++..+..+....++++|+-|+.-+.++.+++....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 56799999999999988777777666554444589999999999999887776544
No 489
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.51 E-value=1.3 Score=43.42 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=45.3
Q ss_pred cHHHHHhHHhhhc-------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 61 SEVQHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 61 ~~~Q~~~~~~~~~-------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
+--|..|+-.+.. +.-+-+.|.-|-||+.+.-+.+......+-. .+.+-.|+-+-.....+.
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys--nIyvtSPspeNlkTlFeF 323 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS--NIYVTSPSPENLKTLFEF 323 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc--eEEEcCCChHHHHHHHHH
Confidence 6778888766554 2347889999999998887877777766554 577888988766655443
No 490
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=1.3 Score=43.21 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+++.||+|+|||+.+
T Consensus 276 ~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCeeEEECCCCCCHHHHH
Confidence 456999999999999764
No 491
>PRK14701 reverse gyrase; Provisional
Probab=90.48 E-value=1.1 Score=49.56 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=53.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecc
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 338 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 338 (418)
.+.+++|.+|+++.+.++.+.|... +..+..+||+++..++...++.+.+|+.+|+|+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 456678999999999999999999999999999964
No 492
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=90.26 E-value=0.43 Score=47.10 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCcHHHHHHHHHHHH
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
|...+...|..|+...+..+--++.||+|+|||++.+.++-..+... .....++++|-|...++|....+.
T Consensus 375 g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred CceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 33456678999998888888899999999999988766554444322 223368999999988888755544
No 493
>PHA02542 41 41 helicase; Provisional
Probab=90.21 E-value=1 Score=43.21 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=27.0
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
.-+++.|.+|.|||..++-.+...+.. +.+++++.- ..-..|+..++
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~---g~~Vl~fSL-EM~~~ql~~Rl 237 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQ---GYNVLYISM-EMAEEVIAKRI 237 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEEec-cCCHHHHHHHH
Confidence 347889999999997665444444422 225666652 22234444444
No 494
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.18 E-value=1.9 Score=36.80 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCccEEEEechhhhccCCCCHHH-HHHHHhhCCCCccEEEEEec
Q 014801 180 KNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT 222 (418)
.+.+.+++||+=...+ ..|... ..++.+...++..+++.|=.
T Consensus 164 ~~pdILllDEvlavGD-~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 164 VEPDILLLDEVLAVGD-AAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred cCCCEEEEehhhhcCC-HHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3678899999988776 344443 44444443555556666544
No 495
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.17 E-value=0.55 Score=46.62 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=50.1
Q ss_pred HhhhcCCccEEEEecccccCCCCCCC--------CEEEEecCCCChhhhhhhcccccCCCCc-eeEEEEec
Q 014801 323 KGFKEGNKRILVATDLVGRGIDIERV--------NIVINYDMPDSADTYLHRVGRAGRFGTK-GLAITFVS 384 (418)
Q Consensus 323 ~~f~~g~~~vlv~t~~l~~G~d~~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~ 384 (418)
+.|.+|+-.|.|-..+.+.||.+..- ++=|.+..|||.+..+|..||..|.++- +.-++|+.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 46889999999999999999998753 3456789999999999999999997653 55555544
No 496
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.15 E-value=0.55 Score=45.06 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
..++++.||||+|++.. ..|...+.. ++.-+ ..++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~-~afNALLKT-LEEPP--~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK-QAFNALLKT-LEEPP--SHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhH-HHHHHHhcc-cccCc--cCeEEEEec
Confidence 45788999999998876 344333332 33222 345555555
No 497
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.12 E-value=0.72 Score=38.35 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=34.4
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCC-------CCCCeeEEEecCcHHHHHHHHHHHHHHh
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFERFS 129 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-------~~~~~~~lii~P~~~l~~q~~~~~~~~~ 129 (418)
.|.-+++.|++|+|||...+-.+...+.. ...+.+++++..-.. ..++.+.+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 46679999999999997665544444431 113347888876554 556777777665
No 498
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.11 E-value=3.6 Score=39.58 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=72.8
Q ss_pred CCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHhhcCCCc
Q 014801 83 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQ 159 (418)
Q Consensus 83 tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 159 (418)
.+.||+..-++++.+.+..+-.. .++|.+-+.+-+.|+..++..+ +++++..++|+.+.... .+.+..+...
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~P-P~lIfVQs~eRak~L~~~L~~~----~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKP-PVLIFVQSKERAKQLFEELEIY----DNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCC-CeEEEEecHHHHHHHHHHhhhc----cCcceeeEecccchhHHHHHHHHHhccCee
Confidence 46677777777777777666544 6888999999999998887632 48999999998664433 3445667789
Q ss_pred EEEeccHHHHHHHhcCCCCCCCccEEEEechhh
Q 014801 160 IVVGTPGRILALARDKDLSLKNVRHFILDECDK 192 (418)
Q Consensus 160 i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~ 192 (418)
++|||- - +. .++++.++++||-+++-.
T Consensus 441 vLicTd-l----l~-RGiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 441 VLICTD-L----LA-RGIDFKGVNLVINYDFPQ 467 (593)
T ss_pred EEEehh-h----hh-ccccccCcceEEecCCCc
Confidence 999992 1 12 247899999999988763
No 499
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=1.4 Score=42.94 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=36.0
Q ss_pred ccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+.-+|++.|=-+++...++.. ....+-.+.+-. +..-+.+++-||+|.|||+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 555667899998666666655532 222333333322 123567999999999999764
No 500
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.86 E-value=0.43 Score=40.45 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=23.8
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCC
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ 105 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~ 105 (418)
..|.-+.|.||+|||||. ++.++..+.....+
T Consensus 29 ~~Ge~vaI~GpSGSGKST--LLniig~ld~pt~G 60 (226)
T COG1136 29 EAGEFVAIVGPSGSGKST--LLNLLGGLDKPTSG 60 (226)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcccCCCCc
Confidence 346779999999999997 56677666655443
Done!