Query 014801
Match_columns 418
No_of_seqs 183 out of 1975
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 18:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xti_A Probable ATP-dependent 100.0 6.8E-60 2.3E-64 442.7 43.2 383 35-417 6-388 (391)
2 2db3_A ATP-dependent RNA helic 100.0 8.9E-59 3E-63 438.5 43.9 373 35-412 54-433 (434)
3 1s2m_A Putative ATP-dependent 100.0 4.8E-57 1.6E-61 424.5 42.5 377 34-416 18-394 (400)
4 2j0s_A ATP-dependent RNA helic 100.0 1.9E-56 6.5E-61 421.7 41.9 371 36-411 36-407 (410)
5 3eiq_A Eukaryotic initiation f 100.0 3.3E-56 1.1E-60 420.8 38.0 373 36-412 39-412 (414)
6 2i4i_A ATP-dependent RNA helic 100.0 5.4E-56 1.8E-60 419.7 39.0 374 34-412 12-408 (417)
7 3fht_A ATP-dependent RNA helic 100.0 3.1E-55 1.1E-59 413.9 40.2 372 34-410 22-403 (412)
8 3pey_A ATP-dependent RNA helic 100.0 6.3E-55 2.2E-59 409.5 40.4 366 36-408 4-379 (395)
9 1hv8_A Putative ATP-dependent 100.0 6.9E-54 2.4E-58 398.5 43.1 362 34-407 3-365 (367)
10 1fuu_A Yeast initiation factor 100.0 1.3E-55 4.6E-60 414.0 23.1 370 36-411 20-390 (394)
11 3fmp_B ATP-dependent RNA helic 100.0 1.1E-54 3.9E-59 417.0 22.5 370 35-409 90-469 (479)
12 2z0m_A 337AA long hypothetical 100.0 5.9E-51 2E-55 374.3 36.6 335 44-400 1-335 (337)
13 3sqw_A ATP-dependent RNA helic 100.0 1.8E-51 6.3E-56 402.8 34.8 360 44-405 28-416 (579)
14 3fho_A ATP-dependent RNA helic 100.0 1.2E-52 4E-57 404.0 22.9 364 39-409 121-493 (508)
15 3i5x_A ATP-dependent RNA helic 100.0 6.6E-51 2.2E-55 398.8 35.0 360 44-405 79-467 (563)
16 2v1x_A ATP-dependent DNA helic 100.0 2.2E-48 7.6E-53 377.4 33.9 334 39-387 23-375 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-48 4.1E-53 375.8 31.3 333 38-387 3-344 (523)
18 3oiy_A Reverse gyrase helicase 100.0 3.6E-47 1.2E-51 358.4 27.3 329 47-400 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-45 5.6E-50 369.5 33.8 358 35-410 6-430 (715)
20 2zj8_A DNA helicase, putative 100.0 4.7E-46 1.6E-50 373.2 27.1 352 38-410 2-408 (720)
21 2p6r_A Afuhel308 helicase; pro 100.0 6.5E-46 2.2E-50 371.2 24.5 354 38-410 2-409 (702)
22 3l9o_A ATP-dependent RNA helic 100.0 8.3E-45 2.8E-49 373.6 28.9 353 37-412 162-620 (1108)
23 2ykg_A Probable ATP-dependent 100.0 7.4E-46 2.5E-50 372.1 18.8 333 50-386 4-516 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 2.7E-44 9.3E-49 352.2 27.2 329 56-388 4-510 (556)
25 1wp9_A ATP-dependent RNA helic 100.0 1.3E-43 4.6E-48 342.0 31.4 324 59-390 9-479 (494)
26 2xgj_A ATP-dependent RNA helic 100.0 4.2E-43 1.4E-47 358.0 36.0 332 56-411 84-521 (1010)
27 3tbk_A RIG-I helicase domain; 100.0 3.4E-44 1.2E-48 351.5 26.5 326 58-388 3-509 (555)
28 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-43 5.8E-48 358.0 27.7 330 55-388 244-751 (797)
29 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-42 4.5E-47 354.9 27.8 330 55-388 244-751 (936)
30 4f92_B U5 small nuclear ribonu 100.0 3.1E-43 1.1E-47 373.8 21.8 342 44-397 66-484 (1724)
31 4ddu_A Reverse gyrase; topoiso 100.0 8.2E-42 2.8E-46 351.3 28.2 320 55-400 75-503 (1104)
32 4f92_B U5 small nuclear ribonu 100.0 1.8E-41 6.1E-46 360.3 29.6 336 43-388 910-1310(1724)
33 4gl2_A Interferon-induced heli 100.0 7.4E-43 2.5E-47 350.5 16.9 314 58-374 6-509 (699)
34 4a4z_A Antiviral helicase SKI2 100.0 5.9E-41 2E-45 342.3 28.0 320 59-395 39-502 (997)
35 2eyq_A TRCF, transcription-rep 100.0 1.6E-39 5.3E-44 336.6 36.4 323 42-386 586-922 (1151)
36 1gm5_A RECG; helicase, replica 100.0 2.4E-41 8.2E-46 334.8 21.7 319 46-385 356-696 (780)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-41 6.2E-46 349.1 20.8 326 48-401 46-468 (1054)
38 1tf5_A Preprotein translocase 100.0 5.4E-39 1.9E-43 311.9 33.1 323 54-388 79-547 (844)
39 2oca_A DAR protein, ATP-depend 100.0 1.6E-40 5.6E-45 321.3 22.2 310 58-384 112-453 (510)
40 2fwr_A DNA repair protein RAD2 100.0 1.6E-40 5.5E-45 318.3 13.5 293 59-386 93-454 (472)
41 2fsf_A Preprotein translocase 100.0 4.6E-37 1.6E-41 297.6 31.9 322 56-389 72-586 (853)
42 1nkt_A Preprotein translocase 100.0 1.4E-36 4.9E-41 294.4 32.0 323 55-389 108-620 (922)
43 2jlq_A Serine protease subunit 100.0 3E-38 1E-42 298.9 18.1 287 56-385 1-310 (451)
44 2whx_A Serine protease/ntpase/ 100.0 3.5E-39 1.2E-43 313.9 11.6 327 42-411 155-505 (618)
45 2xau_A PRE-mRNA-splicing facto 100.0 8.4E-38 2.9E-42 311.6 20.5 332 36-385 71-442 (773)
46 1yks_A Genome polyprotein [con 100.0 5.8E-38 2E-42 295.4 13.2 303 70-414 4-329 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 3.9E-37 1.3E-41 296.6 19.2 277 59-388 217-516 (666)
48 3h1t_A Type I site-specific re 100.0 4.3E-37 1.5E-41 302.0 19.1 310 59-386 178-558 (590)
49 2wv9_A Flavivirin protease NS2 100.0 7.7E-38 2.6E-42 306.2 13.3 299 59-399 215-548 (673)
50 2z83_A Helicase/nucleoside tri 100.0 4.7E-37 1.6E-41 291.1 16.9 281 65-386 12-313 (459)
51 3dmq_A RNA polymerase-associat 100.0 1.5E-36 5.3E-41 310.4 20.7 320 58-383 152-610 (968)
52 1t6n_A Probable ATP-dependent 100.0 4.9E-35 1.7E-39 251.2 23.9 214 29-242 6-219 (220)
53 2v6i_A RNA helicase; membrane, 100.0 1.8E-35 6.2E-40 278.0 19.8 269 74-384 2-289 (431)
54 1z63_A Helicase of the SNF2/RA 100.0 8.4E-35 2.9E-39 280.6 24.9 307 59-384 37-451 (500)
55 1vec_A ATP-dependent RNA helic 100.0 5.6E-34 1.9E-38 242.1 25.7 204 36-241 2-205 (206)
56 3fe2_A Probable ATP-dependent 100.0 3.9E-34 1.3E-38 248.9 24.4 211 33-246 25-240 (242)
57 2oxc_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 247.5 23.1 212 29-242 16-227 (230)
58 3bor_A Human initiation factor 100.0 6.7E-34 2.3E-38 246.5 21.6 207 35-243 28-234 (237)
59 1q0u_A Bstdead; DEAD protein, 100.0 8.8E-34 3E-38 243.0 21.6 208 36-245 3-213 (219)
60 1qde_A EIF4A, translation init 100.0 2.2E-33 7.6E-38 241.6 23.4 206 36-245 13-218 (224)
61 3iuy_A Probable ATP-dependent 100.0 1.6E-33 5.4E-38 243.1 22.0 207 32-242 14-227 (228)
62 3ber_A Probable ATP-dependent 100.0 3.6E-33 1.2E-37 243.3 23.5 207 34-243 40-247 (249)
63 3rc3_A ATP-dependent RNA helic 100.0 2.6E-33 8.8E-38 273.4 23.7 279 63-383 144-442 (677)
64 3fmo_B ATP-dependent RNA helic 100.0 5.2E-33 1.8E-37 248.5 22.9 206 35-244 90-298 (300)
65 3mwy_W Chromo domain-containin 100.0 6.7E-33 2.3E-37 279.7 26.3 339 58-406 235-705 (800)
66 1z3i_X Similar to RAD54-like; 100.0 2.4E-31 8.1E-36 262.0 35.2 334 59-401 55-544 (644)
67 2gxq_A Heat resistant RNA depe 100.0 2.2E-32 7.5E-37 232.5 23.9 201 38-243 2-205 (207)
68 2pl3_A Probable ATP-dependent 100.0 4.8E-32 1.6E-36 235.1 22.8 205 36-244 24-233 (236)
69 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.7E-32 9.1E-37 277.0 23.3 311 59-384 271-707 (1038)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 3.1E-32 1E-36 238.8 20.2 208 36-246 22-242 (253)
71 3jux_A Protein translocase sub 100.0 1.4E-30 5E-35 247.3 32.4 319 56-389 73-590 (822)
72 3dkp_A Probable ATP-dependent 100.0 4.1E-32 1.4E-36 236.8 19.5 209 37-246 25-243 (245)
73 3ly5_A ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 235.8 20.8 202 35-239 50-258 (262)
74 1t5i_A C_terminal domain of A 100.0 8.8E-29 3E-33 202.6 16.6 166 252-417 4-169 (172)
75 2ipc_A Preprotein translocase 100.0 1.8E-26 6.2E-31 223.3 32.6 320 55-389 76-701 (997)
76 2hjv_A ATP-dependent RNA helic 100.0 8.4E-27 2.9E-31 189.3 20.1 156 251-407 7-162 (163)
77 1fuk_A Eukaryotic initiation f 100.0 1.1E-26 3.6E-31 189.2 20.0 158 253-411 3-161 (165)
78 1c4o_A DNA nucleotide excision 99.9 2.7E-25 9.3E-30 218.6 30.7 109 278-387 438-551 (664)
79 2p6n_A ATP-dependent RNA helic 99.9 8.1E-27 2.8E-31 193.8 16.9 178 233-412 10-187 (191)
80 2rb4_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 187.6 19.2 159 251-410 5-170 (175)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.9E-26 9.9E-31 189.7 15.3 161 250-411 16-177 (185)
82 2d7d_A Uvrabc system protein B 99.9 3.3E-24 1.1E-28 210.8 30.4 143 268-411 433-589 (661)
83 3eaq_A Heat resistant RNA depe 99.9 2.3E-25 7.9E-30 188.6 17.9 153 255-408 7-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.7E-24 6E-29 191.5 18.0 155 254-409 3-157 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 6.2E-26 2.1E-30 185.5 0.0 152 255-407 5-157 (170)
86 3b6e_A Interferon-induced heli 99.9 5.1E-24 1.8E-28 182.0 8.8 165 55-222 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.1E-22 3.6E-27 196.4 15.6 102 278-385 383-520 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 6.2E-20 2.1E-24 177.8 27.7 313 59-387 3-532 (551)
89 1rif_A DAR protein, DNA helica 99.9 5.2E-22 1.8E-26 176.4 10.3 154 59-227 113-266 (282)
90 3llm_A ATP-dependent RNA helic 99.8 9.9E-21 3.4E-25 163.3 12.2 170 57-238 59-231 (235)
91 2fz4_A DNA repair protein RAD2 99.8 1.1E-19 3.7E-24 156.5 13.0 138 59-226 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.1E-18 3.7E-23 170.3 20.0 103 279-385 448-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 3.6E-18 1.2E-22 149.4 13.8 135 262-396 93-235 (271)
94 1w36_D RECD, exodeoxyribonucle 98.7 2.9E-08 9.9E-13 96.8 9.2 146 61-222 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 1.9E-07 6.5E-12 92.1 9.1 67 59-128 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.4 1.6E-06 5.6E-11 85.0 12.4 70 57-128 178-247 (624)
97 3e1s_A Exodeoxyribonuclease V, 98.4 2.2E-06 7.4E-11 82.8 11.9 127 59-222 189-315 (574)
98 3lfu_A DNA helicase II; SF1 he 98.4 1.7E-05 5.8E-10 78.5 18.5 81 58-140 8-90 (647)
99 3upu_A ATP-dependent DNA helic 98.3 2.1E-06 7.2E-11 81.1 10.8 68 55-124 21-93 (459)
100 2xzl_A ATP-dependent helicase 98.3 3.2E-06 1.1E-10 84.8 11.8 70 57-128 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.3 4.6E-06 1.6E-10 83.5 12.6 70 57-128 354-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.0 6.9E-05 2.4E-09 65.6 13.0 130 263-397 107-248 (328)
103 2o0j_A Terminase, DNA packagin 97.5 0.00089 3E-08 60.8 12.0 74 59-133 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.2 0.0029 9.9E-08 61.5 12.9 74 59-133 163-236 (592)
105 3ec2_A DNA replication protein 97.2 0.00085 2.9E-08 54.3 7.2 19 74-92 38-56 (180)
106 2orw_A Thymidine kinase; TMTK, 97.2 0.00074 2.5E-08 54.8 6.7 39 74-115 3-41 (184)
107 3vkw_A Replicase large subunit 97.2 0.0015 5.1E-08 60.1 9.1 107 76-222 163-269 (446)
108 1uaa_A REP helicase, protein ( 97.2 0.00038 1.3E-08 69.1 5.6 82 59-142 2-86 (673)
109 1a5t_A Delta prime, HOLB; zinc 97.0 0.002 6.9E-08 57.8 8.3 36 60-95 3-45 (334)
110 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0015 5.1E-08 65.2 7.5 82 58-141 10-93 (724)
111 3u4q_A ATP-dependent helicase/ 96.8 0.0019 6.6E-08 68.3 7.5 69 58-128 9-80 (1232)
112 1xx6_A Thymidine kinase; NESG, 96.8 0.0029 9.9E-08 51.5 6.9 39 74-115 8-46 (191)
113 2zpa_A Uncharacterized protein 96.6 0.0062 2.1E-07 59.0 9.1 113 59-224 175-289 (671)
114 2b8t_A Thymidine kinase; deoxy 96.6 0.0012 4E-08 55.2 3.6 91 74-194 12-102 (223)
115 2chg_A Replication factor C sm 96.6 0.012 4E-07 49.0 9.9 40 180-221 101-140 (226)
116 2j9r_A Thymidine kinase; TK1, 96.6 0.0049 1.7E-07 50.7 6.9 40 74-116 28-67 (214)
117 3te6_A Regulatory protein SIR3 96.5 0.011 3.7E-07 52.2 8.8 45 181-226 132-176 (318)
118 1l8q_A Chromosomal replication 96.4 0.0089 3.1E-07 53.3 8.0 19 74-92 37-55 (324)
119 2orv_A Thymidine kinase; TP4A 96.1 0.0046 1.6E-07 51.4 4.3 39 74-115 19-57 (234)
120 3bos_A Putative DNA replicatio 96.1 0.003 1E-07 53.5 3.4 19 73-91 51-69 (242)
121 2kjq_A DNAA-related protein; s 96.1 0.0022 7.5E-08 50.0 2.2 19 73-91 35-53 (149)
122 3n70_A Transport activator; si 96.0 0.022 7.5E-07 44.0 7.5 20 72-91 22-41 (145)
123 4b4t_J 26S protease regulatory 96.0 0.017 5.9E-07 52.4 7.8 58 31-91 139-199 (405)
124 3kl4_A SRP54, signal recogniti 96.0 0.026 8.9E-07 52.0 9.1 55 180-234 178-234 (433)
125 2z4s_A Chromosomal replication 96.0 0.022 7.5E-07 53.1 8.8 19 74-92 130-148 (440)
126 3eie_A Vacuolar protein sortin 96.0 0.019 6.5E-07 51.1 7.9 60 30-92 8-69 (322)
127 4b4t_M 26S protease regulatory 95.9 0.0076 2.6E-07 55.6 5.2 57 32-91 173-232 (434)
128 3e2i_A Thymidine kinase; Zn-bi 95.7 0.0083 2.8E-07 49.2 4.0 40 74-116 28-67 (219)
129 4b4t_H 26S protease regulatory 95.7 0.038 1.3E-06 51.1 8.7 57 32-91 201-260 (467)
130 1d2n_A N-ethylmaleimide-sensit 95.6 0.055 1.9E-06 46.7 9.4 18 75-92 65-82 (272)
131 4b4t_K 26S protease regulatory 95.6 0.02 6.8E-07 52.7 6.4 57 32-91 164-223 (428)
132 3u61_B DNA polymerase accessor 95.5 0.061 2.1E-06 47.8 9.3 39 180-220 104-143 (324)
133 3syl_A Protein CBBX; photosynt 95.5 0.022 7.5E-07 50.3 6.3 18 75-92 68-85 (309)
134 4b4t_L 26S protease subunit RP 95.5 0.023 7.8E-07 52.4 6.4 57 32-91 173-232 (437)
135 2gno_A DNA polymerase III, gam 95.4 0.037 1.3E-06 48.7 7.3 39 180-220 81-119 (305)
136 4b4t_I 26S protease regulatory 95.2 0.049 1.7E-06 49.8 7.7 57 32-91 174-233 (437)
137 1gm5_A RECG; helicase, replica 95.1 0.057 1.9E-06 54.0 8.6 79 278-356 416-499 (780)
138 1sxj_E Activator 1 40 kDa subu 95.1 0.24 8E-06 44.5 12.1 43 180-224 133-175 (354)
139 1iqp_A RFCS; clamp loader, ext 95.0 0.053 1.8E-06 48.1 7.4 40 180-221 109-148 (327)
140 2v1u_A Cell division control p 95.0 0.066 2.3E-06 48.7 8.2 19 74-92 44-62 (387)
141 1njg_A DNA polymerase III subu 95.0 0.37 1.3E-05 40.2 12.3 39 181-221 126-164 (250)
142 3pfi_A Holliday junction ATP-d 94.9 0.3 1E-05 43.5 12.0 17 75-91 56-72 (338)
143 1fnn_A CDC6P, cell division co 94.8 0.048 1.6E-06 49.8 6.7 35 76-112 46-80 (389)
144 1sxj_D Activator 1 41 kDa subu 94.7 0.036 1.2E-06 49.9 5.4 40 180-221 132-171 (353)
145 3dm5_A SRP54, signal recogniti 94.6 0.19 6.5E-06 46.4 10.0 34 76-112 102-135 (443)
146 2qby_B CDC6 homolog 3, cell di 94.6 0.076 2.6E-06 48.4 7.5 19 74-92 45-63 (384)
147 1g5t_A COB(I)alamin adenosyltr 94.6 0.057 1.9E-06 43.7 5.6 142 74-231 28-171 (196)
148 2qp9_X Vacuolar protein sortin 94.5 0.1 3.5E-06 47.1 7.8 19 74-92 84-102 (355)
149 1sxj_B Activator 1 37 kDa subu 94.4 0.053 1.8E-06 48.0 5.8 38 181-220 107-144 (323)
150 1jr3_A DNA polymerase III subu 94.0 0.2 6.7E-06 45.4 8.8 39 180-220 118-156 (373)
151 2qby_A CDC6 homolog 1, cell di 93.8 0.11 3.6E-06 47.3 6.6 19 74-92 45-63 (386)
152 3oiy_A Reverse gyrase helicase 93.7 0.18 6E-06 46.5 8.0 79 277-355 62-147 (414)
153 1sxj_C Activator 1 40 kDa subu 93.7 0.32 1.1E-05 43.4 9.5 39 180-220 109-147 (340)
154 3vfd_A Spastin; ATPase, microt 93.5 0.2 6.9E-06 45.7 8.0 19 74-92 148-166 (389)
155 2chq_A Replication factor C sm 93.4 0.28 9.6E-06 43.1 8.7 17 76-92 40-56 (319)
156 3hu3_A Transitional endoplasmi 93.2 0.24 8.3E-06 46.6 8.0 19 74-92 238-256 (489)
157 3pvs_A Replication-associated 92.9 0.12 4.3E-06 48.0 5.7 18 75-92 51-68 (447)
158 2r6a_A DNAB helicase, replicat 92.8 0.22 7.5E-06 46.5 7.2 39 73-113 202-240 (454)
159 2rb4_A ATP-dependent RNA helic 92.8 0.38 1.3E-05 38.1 7.7 72 107-189 36-110 (175)
160 2ce7_A Cell division protein F 92.6 0.17 5.9E-06 47.3 6.1 18 74-91 49-66 (476)
161 2hjv_A ATP-dependent RNA helic 92.6 0.73 2.5E-05 36.0 9.0 90 85-190 20-112 (163)
162 2p6n_A ATP-dependent RNA helic 92.3 0.93 3.2E-05 36.5 9.5 72 107-189 56-130 (191)
163 2q6t_A DNAB replication FORK h 92.2 0.26 9E-06 45.9 6.8 38 74-113 200-237 (444)
164 1fuk_A Eukaryotic initiation f 91.9 0.55 1.9E-05 36.8 7.5 88 87-190 17-107 (165)
165 3hjh_A Transcription-repair-co 91.9 0.7 2.4E-05 43.3 9.3 75 268-355 372-446 (483)
166 3co5_A Putative two-component 91.6 0.13 4.6E-06 39.3 3.5 20 72-91 25-44 (143)
167 4a1f_A DNAB helicase, replicat 91.6 0.11 3.7E-06 46.3 3.3 50 72-125 44-93 (338)
168 2fna_A Conserved hypothetical 91.6 6.8 0.00023 34.6 16.2 39 182-222 138-178 (357)
169 1t5i_A C_terminal domain of A 91.5 0.48 1.7E-05 37.4 6.9 90 85-190 16-108 (172)
170 2eyq_A TRCF, transcription-rep 91.4 0.68 2.3E-05 48.7 9.5 77 277-353 650-731 (1151)
171 2w58_A DNAI, primosome compone 91.4 0.33 1.1E-05 39.5 5.9 18 75-92 55-72 (202)
172 1t6n_A Probable ATP-dependent 91.3 0.57 2E-05 38.6 7.4 73 280-355 83-166 (220)
173 2jgn_A DBX, DDX3, ATP-dependen 91.3 0.67 2.3E-05 37.1 7.6 90 84-188 29-121 (185)
174 3cf2_A TER ATPase, transitiona 91.0 0.51 1.7E-05 47.1 7.7 60 31-91 468-528 (806)
175 3eaq_A Heat resistant RNA depe 90.7 1.3 4.3E-05 36.4 8.8 70 107-187 33-105 (212)
176 2l82_A Designed protein OR32; 90.5 1.2 4.1E-05 31.2 6.9 51 282-332 5-55 (162)
177 4ddu_A Reverse gyrase; topoiso 90.1 0.56 1.9E-05 49.0 7.4 79 277-355 119-204 (1104)
178 3ber_A Probable ATP-dependent 90.1 2.3 8E-05 35.8 10.2 75 277-355 109-194 (249)
179 3b85_A Phosphate starvation-in 90.0 0.36 1.2E-05 39.6 4.8 35 57-91 5-39 (208)
180 1oyw_A RECQ helicase, ATP-depe 89.7 1.9 6.7E-05 40.9 10.3 59 279-337 65-123 (523)
181 3i5x_A ATP-dependent RNA helic 89.3 2.4 8.1E-05 40.7 10.9 77 106-190 340-419 (563)
182 3cf2_A TER ATPase, transitiona 89.2 0.47 1.6E-05 47.3 5.8 17 75-91 239-255 (806)
183 1p9r_A General secretion pathw 88.9 0.42 1.4E-05 43.9 4.8 39 61-100 152-192 (418)
184 2d7d_A Uvrabc system protein B 88.9 6.2 0.00021 38.7 13.5 77 107-194 447-526 (661)
185 2oxc_A Probable ATP-dependent 88.7 1.5 5.2E-05 36.3 8.0 71 278-353 91-172 (230)
186 2oap_1 GSPE-2, type II secreti 88.7 0.63 2.2E-05 44.0 6.0 38 61-99 246-284 (511)
187 2v1x_A ATP-dependent DNA helic 88.3 1 3.4E-05 43.6 7.3 59 279-337 84-144 (591)
188 2i4i_A ATP-dependent RNA helic 88.2 2.8 9.4E-05 38.3 10.1 71 106-187 277-350 (417)
189 2qgz_A Helicase loader, putati 88.2 0.31 1.1E-05 42.8 3.4 20 74-93 152-171 (308)
190 3io5_A Recombination and repai 87.9 0.41 1.4E-05 41.9 3.9 41 76-117 30-70 (333)
191 3cmu_A Protein RECA, recombina 87.8 0.25 8.4E-06 54.2 2.9 38 74-114 1427-1464(2050)
192 3sqw_A ATP-dependent RNA helic 87.7 3.7 0.00013 39.5 11.0 78 106-191 289-369 (579)
193 3e70_C DPA, signal recognition 87.3 4.2 0.00015 35.8 10.2 53 182-234 212-264 (328)
194 2dr3_A UPF0273 protein PH0284; 87.3 0.34 1.2E-05 40.8 3.0 50 73-126 22-71 (247)
195 1vec_A ATP-dependent RNA helic 87.2 3.2 0.00011 33.4 9.0 74 278-355 70-154 (206)
196 2pt7_A CAG-ALFA; ATPase, prote 86.9 0.67 2.3E-05 41.1 4.8 19 72-90 169-187 (330)
197 2gza_A Type IV secretion syste 86.8 0.65 2.2E-05 41.8 4.7 20 71-90 172-191 (361)
198 1xwi_A SKD1 protein; VPS4B, AA 86.4 1 3.5E-05 39.7 5.8 56 34-92 6-63 (322)
199 1xti_A Probable ATP-dependent 86.0 2.9 9.8E-05 37.7 8.8 73 279-354 76-159 (391)
200 1ofh_A ATP-dependent HSL prote 85.6 1.7 5.9E-05 37.8 6.8 19 74-92 50-68 (310)
201 1w36_B RECB, exodeoxyribonucle 85.6 1.1 3.9E-05 47.2 6.5 54 75-128 17-79 (1180)
202 3cf0_A Transitional endoplasmi 85.5 0.38 1.3E-05 42.1 2.4 56 34-92 9-67 (301)
203 1kgd_A CASK, peripheral plasma 85.4 0.47 1.6E-05 37.8 2.8 19 73-91 4-22 (180)
204 3nbx_X ATPase RAVA; AAA+ ATPas 85.4 0.94 3.2E-05 42.7 5.2 43 48-91 16-58 (500)
205 3h4m_A Proteasome-activating n 85.3 0.46 1.6E-05 41.1 2.9 53 36-91 13-68 (285)
206 4ag6_A VIRB4 ATPase, type IV s 85.2 0.68 2.3E-05 42.2 4.1 41 73-116 34-74 (392)
207 2eyu_A Twitching motility prot 85.2 0.41 1.4E-05 40.9 2.5 21 71-91 22-42 (261)
208 1w4r_A Thymidine kinase; type 85.1 0.56 1.9E-05 37.8 3.0 38 74-114 20-57 (195)
209 3fe2_A Probable ATP-dependent 85.1 3.7 0.00013 34.2 8.4 72 279-354 102-183 (242)
210 3hws_A ATP-dependent CLP prote 85.0 1.3 4.4E-05 39.9 5.8 19 74-92 51-69 (363)
211 1c4o_A DNA nucleotide excision 84.8 14 0.00046 36.3 13.3 76 107-193 441-519 (664)
212 1e9r_A Conjugal transfer prote 84.7 0.64 2.2E-05 43.1 3.7 44 73-119 52-95 (437)
213 3i32_A Heat resistant RNA depe 84.6 2.8 9.6E-05 36.5 7.5 90 84-189 12-104 (300)
214 3iuy_A Probable ATP-dependent 84.6 2.2 7.7E-05 35.2 6.8 74 278-355 93-175 (228)
215 3pey_A ATP-dependent RNA helic 84.5 14 0.00047 33.1 12.7 75 106-191 244-321 (395)
216 3bor_A Human initiation factor 84.4 2.8 9.7E-05 34.8 7.4 75 278-355 97-181 (237)
217 1lvg_A Guanylate kinase, GMP k 84.4 0.55 1.9E-05 38.1 2.8 19 73-91 3-21 (198)
218 2qmh_A HPR kinase/phosphorylas 84.3 0.53 1.8E-05 38.1 2.5 18 74-91 34-51 (205)
219 3u4q_B ATP-dependent helicase/ 84.2 0.46 1.6E-05 50.2 2.7 39 78-116 5-43 (1166)
220 1jbk_A CLPB protein; beta barr 84.1 0.56 1.9E-05 37.3 2.7 18 74-91 43-60 (195)
221 3vaa_A Shikimate kinase, SK; s 83.9 0.61 2.1E-05 37.8 2.9 20 73-92 24-43 (199)
222 3a8t_A Adenylate isopentenyltr 83.5 0.56 1.9E-05 41.5 2.6 18 75-92 41-58 (339)
223 3tau_A Guanylate kinase, GMP k 83.5 0.65 2.2E-05 38.0 2.9 20 73-92 7-26 (208)
224 2bjv_A PSP operon transcriptio 83.4 1.7 5.9E-05 36.9 5.7 19 73-91 28-46 (265)
225 3vkg_A Dynein heavy chain, cyt 83.4 1.9 6.6E-05 49.6 7.3 48 44-92 873-924 (3245)
226 2r44_A Uncharacterized protein 83.2 0.54 1.8E-05 41.7 2.4 24 68-91 40-63 (331)
227 2x8a_A Nuclear valosin-contain 83.2 0.72 2.5E-05 39.7 3.1 54 35-91 5-61 (274)
228 2j37_W Signal recognition part 83.0 5.7 0.0002 37.3 9.4 35 76-113 103-137 (504)
229 2w0m_A SSO2452; RECA, SSPF, un 83.0 0.56 1.9E-05 38.9 2.3 22 72-93 21-42 (235)
230 1zp6_A Hypothetical protein AT 83.0 0.54 1.8E-05 37.7 2.2 20 72-91 7-26 (191)
231 3tr0_A Guanylate kinase, GMP k 83.0 0.68 2.3E-05 37.6 2.8 19 73-91 6-24 (205)
232 2ius_A DNA translocase FTSK; n 82.9 1.3 4.5E-05 41.7 5.0 27 72-98 165-191 (512)
233 1qhx_A CPT, protein (chloramph 82.9 0.58 2E-05 37.0 2.3 18 74-91 3-20 (178)
234 2p65_A Hypothetical protein PF 82.8 0.5 1.7E-05 37.5 1.9 19 74-92 43-61 (187)
235 3bh0_A DNAB-like replicative h 82.6 1.1 3.7E-05 39.5 4.1 52 72-127 66-117 (315)
236 3iij_A Coilin-interacting nucl 82.6 0.69 2.4E-05 36.7 2.6 21 72-92 9-29 (180)
237 2qor_A Guanylate kinase; phosp 82.5 0.71 2.4E-05 37.6 2.7 22 71-92 9-30 (204)
238 3exa_A TRNA delta(2)-isopenten 82.5 0.65 2.2E-05 40.6 2.5 18 75-92 4-21 (322)
239 3tif_A Uncharacterized ABC tra 82.4 0.85 2.9E-05 38.2 3.2 27 73-101 30-56 (235)
240 3trf_A Shikimate kinase, SK; a 82.4 0.75 2.6E-05 36.6 2.8 20 74-93 5-24 (185)
241 3lw7_A Adenylate kinase relate 82.3 0.57 2E-05 36.8 2.1 17 76-92 3-19 (179)
242 2j41_A Guanylate kinase; GMP, 82.2 0.76 2.6E-05 37.3 2.8 21 72-92 4-24 (207)
243 2db3_A ATP-dependent RNA helic 82.0 5.3 0.00018 36.8 8.8 70 107-187 302-374 (434)
244 3foz_A TRNA delta(2)-isopenten 81.9 0.72 2.4E-05 40.2 2.6 17 76-92 12-28 (316)
245 3ney_A 55 kDa erythrocyte memb 81.7 0.84 2.9E-05 37.0 2.8 20 73-92 18-37 (197)
246 2gxq_A Heat resistant RNA depe 81.6 6.8 0.00023 31.4 8.5 74 278-355 71-152 (207)
247 1n0w_A DNA repair protein RAD5 81.2 1.4 4.9E-05 36.7 4.2 24 73-96 23-46 (243)
248 2zts_A Putative uncharacterize 81.1 0.59 2E-05 39.3 1.8 38 74-113 30-67 (251)
249 3fht_A ATP-dependent RNA helic 81.0 5.3 0.00018 36.2 8.4 72 107-189 268-342 (412)
250 2ze6_A Isopentenyl transferase 81.0 0.8 2.7E-05 38.8 2.6 16 77-92 4-19 (253)
251 2cvh_A DNA repair and recombin 80.9 0.87 3E-05 37.4 2.8 35 73-113 19-53 (220)
252 2qz4_A Paraplegin; AAA+, SPG7, 80.9 0.86 2.9E-05 38.6 2.8 19 74-92 39-57 (262)
253 2l8b_A Protein TRAI, DNA helic 80.8 0.69 2.4E-05 36.6 1.9 59 61-121 36-96 (189)
254 1ixz_A ATP-dependent metallopr 80.6 1.6 5.5E-05 36.8 4.4 54 35-91 11-66 (254)
255 3a00_A Guanylate kinase, GMP k 80.6 0.98 3.4E-05 36.1 2.9 17 75-91 2-18 (186)
256 1z6g_A Guanylate kinase; struc 80.5 1 3.5E-05 37.2 3.0 20 72-91 21-40 (218)
257 1qde_A EIF4A, translation init 80.5 3.7 0.00013 33.6 6.6 73 278-355 81-163 (224)
258 4g1u_C Hemin import ATP-bindin 80.5 1.4 4.9E-05 37.6 4.0 27 73-101 36-62 (266)
259 2j0s_A ATP-dependent RNA helic 80.4 5.3 0.00018 36.3 8.2 72 107-189 278-352 (410)
260 4gp7_A Metallophosphoesterase; 80.3 0.61 2.1E-05 36.8 1.5 20 73-92 8-27 (171)
261 1kag_A SKI, shikimate kinase I 80.3 1 3.6E-05 35.3 2.9 18 74-91 4-21 (173)
262 1ex7_A Guanylate kinase; subst 80.3 0.87 3E-05 36.5 2.4 16 75-90 2-17 (186)
263 2z43_A DNA repair and recombin 80.2 1.6 5.3E-05 38.6 4.3 41 74-114 107-150 (324)
264 3b9p_A CG5977-PA, isoform A; A 80.2 0.92 3.1E-05 39.4 2.8 53 36-91 17-71 (297)
265 1lv7_A FTSH; alpha/beta domain 80.0 0.76 2.6E-05 39.0 2.1 18 74-91 45-62 (257)
266 2ewv_A Twitching motility prot 79.8 0.81 2.8E-05 41.4 2.3 20 72-91 134-153 (372)
267 1kht_A Adenylate kinase; phosp 79.7 0.86 2.9E-05 36.4 2.3 19 74-92 3-21 (192)
268 1s2m_A Putative ATP-dependent 79.7 6.5 0.00022 35.5 8.5 71 107-188 260-333 (400)
269 3kb2_A SPBC2 prophage-derived 79.7 0.79 2.7E-05 35.9 2.0 17 76-92 3-19 (173)
270 1hv8_A Putative ATP-dependent 79.7 9.2 0.00031 33.8 9.4 72 107-189 240-314 (367)
271 1tue_A Replication protein E1; 79.7 0.8 2.7E-05 37.3 2.0 45 45-91 27-75 (212)
272 3jvv_A Twitching mobility prot 79.6 0.89 3E-05 40.8 2.5 18 73-90 122-139 (356)
273 3gfo_A Cobalt import ATP-bindi 79.4 1.2 4.1E-05 38.3 3.2 26 73-100 33-58 (275)
274 2ff7_A Alpha-hemolysin translo 79.3 1.2 4.2E-05 37.5 3.1 26 73-100 34-59 (247)
275 1y63_A LMAJ004144AAA protein; 79.3 1.1 3.8E-05 35.7 2.8 20 73-92 9-28 (184)
276 3t15_A Ribulose bisphosphate c 79.2 0.99 3.4E-05 39.2 2.6 18 75-92 37-54 (293)
277 1sgw_A Putative ABC transporte 79.2 1.3 4.6E-05 36.3 3.3 25 73-99 34-58 (214)
278 1mv5_A LMRA, multidrug resista 79.2 1.3 4.3E-05 37.3 3.2 26 73-100 27-52 (243)
279 1ly1_A Polynucleotide kinase; 79.1 0.85 2.9E-05 36.0 2.1 17 76-92 4-20 (181)
280 2pcj_A ABC transporter, lipopr 79.0 1.3 4.4E-05 36.8 3.1 26 73-100 29-54 (224)
281 3crm_A TRNA delta(2)-isopenten 78.8 1 3.5E-05 39.6 2.6 17 76-92 7-23 (323)
282 1hqc_A RUVB; extended AAA-ATPa 78.7 3.6 0.00012 36.0 6.2 18 74-91 38-55 (324)
283 2r2a_A Uncharacterized protein 78.5 1.2 4.1E-05 36.2 2.7 23 76-98 7-29 (199)
284 3ly5_A ATP-dependent RNA helic 78.4 8.8 0.0003 32.4 8.4 73 278-354 125-208 (262)
285 1sxj_A Activator 1 95 kDa subu 78.4 0.9 3.1E-05 43.2 2.3 43 180-224 147-190 (516)
286 1nlf_A Regulatory protein REPA 78.4 2.5 8.6E-05 36.3 5.0 27 69-95 25-51 (279)
287 3nwn_A Kinesin-like protein KI 78.3 1.4 4.8E-05 39.4 3.3 25 68-92 97-123 (359)
288 1s96_A Guanylate kinase, GMP k 78.3 1.3 4.3E-05 36.7 2.9 20 71-90 13-32 (219)
289 3uk6_A RUVB-like 2; hexameric 78.2 1.1 3.8E-05 40.3 2.7 19 74-92 70-88 (368)
290 3cm0_A Adenylate kinase; ATP-b 78.2 0.92 3.2E-05 36.1 2.0 19 74-92 4-22 (186)
291 1u0j_A DNA replication protein 78.1 1.8 6.2E-05 36.8 3.8 45 45-92 72-122 (267)
292 2zr9_A Protein RECA, recombina 78.1 1.3 4.4E-05 39.6 3.0 39 73-114 60-98 (349)
293 1knq_A Gluconate kinase; ALFA/ 78.1 0.94 3.2E-05 35.7 2.0 19 74-92 8-26 (175)
294 1ojl_A Transcriptional regulat 78.1 1.5 5E-05 38.4 3.4 19 73-91 24-42 (304)
295 2pze_A Cystic fibrosis transme 78.0 1.4 4.9E-05 36.6 3.1 18 73-90 33-50 (229)
296 3d3q_A TRNA delta(2)-isopenten 78.0 1.1 3.8E-05 39.6 2.6 17 76-92 9-25 (340)
297 2px0_A Flagellar biosynthesis 78.0 1.8 6.3E-05 37.6 4.0 22 74-95 105-126 (296)
298 1znw_A Guanylate kinase, GMP k 77.9 1.3 4.5E-05 36.1 2.9 21 70-90 16-36 (207)
299 3nh6_A ATP-binding cassette SU 77.8 1.1 3.7E-05 39.2 2.4 26 73-100 79-104 (306)
300 2iut_A DNA translocase FTSK; n 77.8 2.4 8.1E-05 40.4 4.9 41 74-114 214-255 (574)
301 1g6h_A High-affinity branched- 77.7 1.4 4.9E-05 37.4 3.1 26 73-100 32-57 (257)
302 2ffh_A Protein (FFH); SRP54, s 77.7 25 0.00086 32.1 11.5 20 76-95 100-119 (425)
303 1gku_B Reverse gyrase, TOP-RG; 77.6 5.5 0.00019 41.4 8.0 75 278-354 98-182 (1054)
304 2olj_A Amino acid ABC transpor 77.6 1.5 5.1E-05 37.4 3.2 25 74-100 50-74 (263)
305 2ixe_A Antigen peptide transpo 77.5 1.5 5.2E-05 37.6 3.2 26 73-100 44-69 (271)
306 1ji0_A ABC transporter; ATP bi 77.4 1.5 5.1E-05 36.8 3.1 26 73-100 31-56 (240)
307 1b0u_A Histidine permease; ABC 77.4 1.5 5.2E-05 37.3 3.2 26 73-100 31-56 (262)
308 1wp9_A ATP-dependent RNA helic 77.4 5.4 0.00018 36.9 7.4 96 83-190 340-446 (494)
309 1vpl_A ABC transporter, ATP-bi 77.0 1.6 5.4E-05 37.1 3.2 26 73-100 40-65 (256)
310 1bg2_A Kinesin; motor protein, 77.0 1.6 5.6E-05 38.4 3.4 25 68-92 70-96 (325)
311 4eun_A Thermoresistant glucoki 76.9 1.5 5E-05 35.5 2.9 19 73-91 28-46 (200)
312 2pl3_A Probable ATP-dependent 76.8 4.6 0.00016 33.4 6.1 72 278-354 96-178 (236)
313 1u94_A RECA protein, recombina 76.8 1.5 5E-05 39.3 3.1 38 73-113 62-99 (356)
314 2i1q_A DNA repair and recombin 76.7 2.2 7.5E-05 37.6 4.2 24 74-97 98-121 (322)
315 2r8r_A Sensor protein; KDPD, P 76.7 1.7 5.8E-05 35.9 3.1 26 76-101 8-33 (228)
316 2oca_A DAR protein, ATP-depend 76.7 22 0.00075 33.3 11.5 75 107-191 349-426 (510)
317 3lnc_A Guanylate kinase, GMP k 76.7 0.89 3E-05 37.9 1.5 20 72-91 25-44 (231)
318 3bgw_A DNAB-like replicative h 76.4 1.7 5.8E-05 40.3 3.4 38 73-113 196-233 (444)
319 1wrb_A DJVLGB; RNA helicase, D 76.3 21 0.00072 29.7 10.2 73 279-355 100-182 (253)
320 2zan_A Vacuolar protein sortin 76.3 1.2 4.2E-05 41.3 2.5 19 74-92 167-185 (444)
321 2yz2_A Putative ABC transporte 76.0 1.7 5.9E-05 37.1 3.2 26 73-100 32-57 (266)
322 2ehv_A Hypothetical protein PH 76.0 1.3 4.4E-05 37.2 2.4 22 71-92 27-48 (251)
323 3t61_A Gluconokinase; PSI-biol 76.0 1.2 4E-05 36.1 2.1 18 75-92 19-36 (202)
324 2bdt_A BH3686; alpha-beta prot 76.0 1.2 4.1E-05 35.6 2.1 17 76-92 4-20 (189)
325 1cr0_A DNA primase/helicase; R 76.0 1.8 6E-05 37.6 3.3 23 71-93 32-54 (296)
326 1iy2_A ATP-dependent metallopr 75.9 1.6 5.4E-05 37.5 3.0 54 35-91 35-90 (278)
327 1goj_A Kinesin, kinesin heavy 75.9 1.8 6.2E-05 38.6 3.3 23 69-91 74-98 (355)
328 1um8_A ATP-dependent CLP prote 75.8 1.5 5.1E-05 39.6 2.9 19 74-92 72-90 (376)
329 2ihy_A ABC transporter, ATP-bi 75.8 1.7 5.9E-05 37.4 3.1 26 73-100 46-71 (279)
330 3eph_A TRNA isopentenyltransfe 75.7 1.3 4.6E-05 40.1 2.5 17 76-92 4-20 (409)
331 1t5c_A CENP-E protein, centrom 75.7 1.8 6.2E-05 38.5 3.3 23 69-91 71-95 (349)
332 4akg_A Glutathione S-transfera 75.7 3.3 0.00011 47.2 6.0 48 45-93 891-942 (2695)
333 3b6u_A Kinesin-like protein KI 75.5 1.9 6.4E-05 38.8 3.3 24 68-91 94-119 (372)
334 2h58_A Kinesin-like protein KI 75.4 1.9 6.6E-05 38.0 3.3 26 67-92 72-99 (330)
335 3hr8_A Protein RECA; alpha and 75.3 1.1 3.9E-05 40.0 1.9 39 74-115 61-99 (356)
336 1f2t_A RAD50 ABC-ATPase; DNA d 75.1 1.3 4.6E-05 33.9 2.1 16 76-91 25-40 (149)
337 2c95_A Adenylate kinase 1; tra 75.1 1.8 6.1E-05 34.7 3.0 21 72-92 7-27 (196)
338 1v5w_A DMC1, meiotic recombina 75.1 2.5 8.5E-05 37.6 4.1 41 75-115 123-166 (343)
339 3gbj_A KIF13B protein; kinesin 75.1 1.9 6.6E-05 38.5 3.3 25 67-91 84-110 (354)
340 2vvg_A Kinesin-2; motor protei 75.1 2 6.7E-05 38.3 3.4 22 70-91 84-107 (350)
341 3lre_A Kinesin-like protein KI 75.1 1.9 6.7E-05 38.4 3.3 23 69-91 99-123 (355)
342 2nr8_A Kinesin-like protein KI 75.0 1.9 6.7E-05 38.5 3.3 24 68-91 96-121 (358)
343 1gvn_B Zeta; postsegregational 75.0 1.3 4.3E-05 38.4 2.1 18 75-92 34-51 (287)
344 2zfi_A Kinesin-like protein KI 74.8 2 6.8E-05 38.6 3.4 24 68-91 82-107 (366)
345 3dc4_A Kinesin-like protein NO 74.8 1.9 6.4E-05 38.3 3.2 23 69-91 88-112 (344)
346 2qt1_A Nicotinamide riboside k 74.8 1 3.5E-05 36.7 1.4 22 70-91 17-38 (207)
347 1v8k_A Kinesin-like protein KI 74.7 2 7E-05 39.0 3.4 24 69-92 148-173 (410)
348 4fcw_A Chaperone protein CLPB; 74.7 1.8 6.2E-05 37.7 3.1 18 75-92 48-65 (311)
349 3t0q_A AGR253WP; kinesin, alph 74.7 2.1 7.3E-05 38.1 3.5 26 67-92 77-104 (349)
350 2rhm_A Putative kinase; P-loop 74.7 1.3 4.5E-05 35.4 2.0 19 74-92 5-23 (193)
351 1x88_A Kinesin-like protein KI 74.6 1.9 6.6E-05 38.6 3.2 26 67-92 80-107 (359)
352 2r62_A Cell division protease 74.6 0.9 3.1E-05 38.8 1.0 19 74-92 44-62 (268)
353 3nwj_A ATSK2; P loop, shikimat 74.6 2.1 7.3E-05 36.1 3.3 20 73-92 47-66 (250)
354 2c9o_A RUVB-like 1; hexameric 74.6 1.6 5.4E-05 40.7 2.8 18 74-91 63-80 (456)
355 1f9v_A Kinesin-like protein KA 74.5 2.2 7.6E-05 37.9 3.6 26 67-92 76-103 (347)
356 3d8b_A Fidgetin-like protein 1 74.5 1.7 5.7E-05 39.0 2.8 19 74-92 117-135 (357)
357 2y65_A Kinesin, kinesin heavy 74.4 2.1 7.1E-05 38.4 3.4 23 69-91 78-102 (365)
358 1c9k_A COBU, adenosylcobinamid 74.4 2 6.7E-05 34.2 2.9 45 77-128 2-46 (180)
359 2v54_A DTMP kinase, thymidylat 74.4 1.7 5.7E-05 35.2 2.6 20 73-92 3-22 (204)
360 1vma_A Cell division protein F 74.3 1.9 6.5E-05 37.7 3.0 18 76-93 106-123 (306)
361 3c8u_A Fructokinase; YP_612366 74.2 1.6 5.6E-05 35.5 2.5 18 74-91 22-39 (208)
362 1tev_A UMP-CMP kinase; ploop, 74.1 1.3 4.5E-05 35.4 1.9 18 75-92 4-21 (196)
363 1ye8_A Protein THEP1, hypothet 74.1 1.8 6.2E-05 34.3 2.6 15 76-90 2-16 (178)
364 1rj9_A FTSY, signal recognitio 74.0 2.8 9.6E-05 36.6 4.0 18 74-91 102-119 (304)
365 2plr_A DTMP kinase, probable t 73.8 1.4 4.6E-05 35.9 1.9 20 73-92 3-22 (213)
366 1tf5_A Preprotein translocase 73.8 10 0.00036 37.8 8.3 73 275-353 120-209 (844)
367 3uie_A Adenylyl-sulfate kinase 73.7 1.7 5.9E-05 35.1 2.5 19 73-91 24-42 (200)
368 1xp8_A RECA protein, recombina 73.6 2 6.7E-05 38.7 3.0 38 74-114 74-111 (366)
369 4etp_A Kinesin-like protein KA 73.5 2.2 7.6E-05 38.8 3.4 26 67-92 132-159 (403)
370 1zuh_A Shikimate kinase; alpha 73.4 1.9 6.5E-05 33.6 2.6 19 75-93 8-26 (168)
371 4a14_A Kinesin, kinesin-like p 73.4 2.3 8E-05 37.8 3.4 23 69-91 77-101 (344)
372 2yjt_D ATP-dependent RNA helic 75.7 0.69 2.4E-05 36.4 0.0 72 107-189 32-106 (170)
373 1in4_A RUVB, holliday junction 73.3 1.8 6.3E-05 38.3 2.8 17 75-91 52-68 (334)
374 2wbe_C Bipolar kinesin KRP-130 73.2 2.1 7.1E-05 38.5 3.1 24 69-92 94-119 (373)
375 3bfn_A Kinesin-like protein KI 73.2 1.9 6.6E-05 38.9 2.9 33 60-92 75-117 (388)
376 1nks_A Adenylate kinase; therm 73.2 1.5 5.2E-05 34.9 2.0 17 76-92 3-19 (194)
377 4a74_A DNA repair and recombin 73.1 1.5 5.1E-05 36.2 2.0 21 73-93 24-44 (231)
378 2qi9_C Vitamin B12 import ATP- 73.1 2.2 7.5E-05 36.0 3.0 26 73-100 25-50 (249)
379 2v9p_A Replication protein E1; 73.0 1.9 6.4E-05 37.6 2.7 18 73-90 125-142 (305)
380 1yks_A Genome polyprotein [con 72.9 3.9 0.00013 37.8 5.0 67 107-186 179-245 (440)
381 1via_A Shikimate kinase; struc 72.8 2.1 7.2E-05 33.6 2.8 17 76-92 6-22 (175)
382 3cob_A Kinesin heavy chain-lik 72.8 2 6.9E-05 38.5 2.9 26 67-92 71-98 (369)
383 4f4c_A Multidrug resistance pr 72.6 4.7 0.00016 43.1 6.1 41 179-220 570-610 (1321)
384 3qf7_A RAD50; ABC-ATPase, ATPa 72.4 2.1 7.2E-05 38.5 3.0 17 76-92 25-41 (365)
385 1zd8_A GTP:AMP phosphotransfer 72.4 2.1 7.2E-05 35.4 2.8 19 74-92 7-25 (227)
386 2i3b_A HCR-ntpase, human cance 72.4 2.3 8E-05 34.1 2.9 43 179-224 103-146 (189)
387 3fb4_A Adenylate kinase; psych 72.0 2 6.9E-05 35.1 2.6 18 76-93 2-19 (216)
388 1zu4_A FTSY; GTPase, signal re 71.9 2.3 7.9E-05 37.4 3.0 18 76-93 107-124 (320)
389 1nij_A Hypothetical protein YJ 71.9 3 0.0001 36.6 3.8 15 77-91 7-21 (318)
390 2iyv_A Shikimate kinase, SK; t 71.7 2.4 8.3E-05 33.5 2.9 18 75-92 3-20 (184)
391 2owm_A Nckin3-434, related to 71.6 2.6 8.8E-05 38.9 3.3 24 69-92 130-155 (443)
392 2onk_A Molybdate/tungstate ABC 71.6 2.7 9.4E-05 35.2 3.3 23 75-99 25-47 (240)
393 2fsf_A Preprotein translocase 71.6 11 0.00037 37.7 7.8 73 275-353 111-200 (853)
394 2heh_A KIF2C protein; kinesin, 71.5 2.6 8.9E-05 38.0 3.3 24 69-92 128-153 (387)
395 2bwj_A Adenylate kinase 5; pho 71.5 2.4 8.3E-05 34.0 2.9 19 74-92 12-30 (199)
396 1g8p_A Magnesium-chelatase 38 71.4 1.3 4.5E-05 39.4 1.4 18 74-91 45-62 (350)
397 3asz_A Uridine kinase; cytidin 71.4 2.1 7.1E-05 34.9 2.5 18 74-91 6-23 (211)
398 2v6i_A RNA helicase; membrane, 71.3 5.6 0.00019 36.7 5.6 66 107-185 173-238 (431)
399 3u06_A Protein claret segregat 71.2 2.4 8.3E-05 38.7 3.0 25 67-91 130-156 (412)
400 3tqc_A Pantothenate kinase; bi 71.2 5.3 0.00018 35.1 5.2 15 77-91 95-109 (321)
401 1nkt_A Preprotein translocase 71.1 14 0.00047 37.3 8.4 74 274-353 147-237 (922)
402 3kta_A Chromosome segregation 71.1 2.3 7.8E-05 33.6 2.6 16 76-91 28-43 (182)
403 3fvq_A Fe(3+) IONS import ATP- 71.0 2.6 9E-05 37.6 3.2 24 74-99 30-53 (359)
404 3dl0_A Adenylate kinase; phosp 71.0 2.2 7.6E-05 34.9 2.6 18 76-93 2-19 (216)
405 3b9q_A Chloroplast SRP recepto 70.9 2.6 8.9E-05 36.7 3.1 18 74-91 100-117 (302)
406 1m7g_A Adenylylsulfate kinase; 70.6 2.4 8.2E-05 34.6 2.7 30 61-91 13-42 (211)
407 1qf9_A UMP/CMP kinase, protein 70.5 2.3 7.9E-05 33.8 2.6 17 76-92 8-24 (194)
408 2pez_A Bifunctional 3'-phospho 70.4 1.9 6.5E-05 34.1 2.0 18 74-91 5-22 (179)
409 3tlx_A Adenylate kinase 2; str 70.4 2.7 9.1E-05 35.3 3.0 20 74-93 29-48 (243)
410 2if2_A Dephospho-COA kinase; a 70.4 1.9 6.5E-05 34.9 2.0 16 76-91 3-18 (204)
411 3fmo_B ATP-dependent RNA helic 70.3 5.8 0.0002 34.4 5.3 71 278-355 161-243 (300)
412 1htw_A HI0065; nucleotide-bind 70.3 1.8 6.1E-05 33.6 1.7 19 72-90 31-49 (158)
413 1cke_A CK, MSSA, protein (cyti 70.1 2.4 8E-05 35.0 2.6 18 75-92 6-23 (227)
414 1jjv_A Dephospho-COA kinase; P 70.1 2.4 8.2E-05 34.3 2.6 17 76-92 4-20 (206)
415 1aky_A Adenylate kinase; ATP:A 70.1 2.6 8.8E-05 34.6 2.8 19 74-92 4-22 (220)
416 1e6c_A Shikimate kinase; phosp 70.1 2.4 8.4E-05 33.0 2.6 18 75-92 3-20 (173)
417 2rep_A Kinesin-like protein KI 70.1 2.8 9.5E-05 37.7 3.1 25 68-92 108-134 (376)
418 3tui_C Methionine import ATP-b 69.8 2.9 0.0001 37.4 3.2 27 73-101 53-79 (366)
419 1ukz_A Uridylate kinase; trans 69.7 2 7E-05 34.7 2.1 16 76-91 17-32 (203)
420 3f9v_A Minichromosome maintena 69.7 2.5 8.4E-05 40.9 2.9 15 76-90 329-343 (595)
421 1z47_A CYSA, putative ABC-tran 69.6 2.9 9.9E-05 37.3 3.2 25 73-99 40-64 (355)
422 2yyz_A Sugar ABC transporter, 69.4 3 0.0001 37.3 3.2 25 73-99 28-52 (359)
423 2wwf_A Thymidilate kinase, put 69.4 2.5 8.5E-05 34.3 2.6 20 73-92 9-28 (212)
424 2pt5_A Shikimate kinase, SK; a 69.2 2.2 7.4E-05 33.2 2.1 17 76-92 2-18 (168)
425 1z5z_A Helicase of the SNF2/RA 69.2 18 0.00061 30.8 8.0 97 83-191 93-193 (271)
426 1g41_A Heat shock protein HSLU 69.2 9.3 0.00032 35.2 6.5 18 74-91 50-67 (444)
427 2jaq_A Deoxyguanosine kinase; 69.0 2.6 8.9E-05 33.9 2.6 17 76-92 2-18 (205)
428 1q57_A DNA primase/helicase; d 69.0 2.9 9.9E-05 39.5 3.2 50 73-125 241-290 (503)
429 3mwy_W Chromo domain-containin 68.9 35 0.0012 34.3 11.2 94 85-191 555-653 (800)
430 3gk5_A Uncharacterized rhodane 68.9 4.7 0.00016 28.7 3.6 37 278-314 54-90 (108)
431 2cbz_A Multidrug resistance-as 68.9 2.4 8.3E-05 35.4 2.4 18 73-90 30-47 (237)
432 2pbr_A DTMP kinase, thymidylat 68.8 2.2 7.5E-05 34.0 2.1 16 77-92 3-18 (195)
433 1zak_A Adenylate kinase; ATP:A 68.8 2.9 9.9E-05 34.4 2.9 18 75-92 6-23 (222)
434 3sr0_A Adenylate kinase; phosp 68.8 2.7 9.2E-05 34.2 2.6 18 76-93 2-19 (206)
435 3rlf_A Maltose/maltodextrin im 68.8 3.1 0.00011 37.5 3.2 25 73-99 28-52 (381)
436 1nn5_A Similar to deoxythymidy 68.6 2.9 9.8E-05 34.0 2.8 21 73-93 8-28 (215)
437 2cdn_A Adenylate kinase; phosp 68.6 2.7 9.2E-05 33.9 2.6 18 75-92 21-38 (201)
438 2it1_A 362AA long hypothetical 68.4 3.2 0.00011 37.2 3.2 25 73-99 28-52 (362)
439 3a4m_A L-seryl-tRNA(SEC) kinas 68.2 2.2 7.6E-05 36.2 2.1 18 75-92 5-22 (260)
440 3lda_A DNA repair protein RAD5 68.1 4.6 0.00016 36.7 4.2 24 35-58 82-105 (400)
441 1q0u_A Bstdead; DEAD protein, 68.1 8.3 0.00028 31.4 5.6 72 278-353 71-156 (219)
442 3auy_A DNA double-strand break 68.0 2.2 7.4E-05 38.5 2.0 16 76-91 27-42 (371)
443 2vli_A Antibiotic resistance p 68.0 2.1 7.1E-05 33.8 1.7 19 74-92 5-23 (183)
444 1v43_A Sugar-binding transport 67.9 3.3 0.00011 37.2 3.2 24 74-99 37-60 (372)
445 2yvu_A Probable adenylyl-sulfa 67.9 2.8 9.5E-05 33.3 2.5 19 74-92 13-31 (186)
446 2f1r_A Molybdopterin-guanine d 67.5 1.7 5.9E-05 34.2 1.1 16 76-91 4-19 (171)
447 3umf_A Adenylate kinase; rossm 67.3 3 0.0001 34.3 2.6 20 74-93 29-48 (217)
448 2z0h_A DTMP kinase, thymidylat 67.3 2.5 8.4E-05 33.9 2.1 17 77-93 3-19 (197)
449 1qvr_A CLPB protein; coiled co 67.2 41 0.0014 34.0 11.4 20 74-93 191-210 (854)
450 3tqf_A HPR(Ser) kinase; transf 67.1 3.1 0.00011 32.8 2.4 19 74-92 16-34 (181)
451 1xjc_A MOBB protein homolog; s 67.0 4.1 0.00014 31.9 3.2 23 76-99 6-28 (169)
452 2pjz_A Hypothetical protein ST 66.9 4 0.00014 34.7 3.4 17 74-90 30-46 (263)
453 3pxg_A Negative regulator of g 66.9 4 0.00014 38.1 3.7 19 74-92 201-219 (468)
454 1ak2_A Adenylate kinase isoenz 66.9 3.2 0.00011 34.4 2.8 20 74-93 16-35 (233)
455 1e4v_A Adenylate kinase; trans 66.9 3 0.0001 34.0 2.6 17 76-92 2-18 (214)
456 3be4_A Adenylate kinase; malar 66.9 3.3 0.00011 33.9 2.8 19 74-92 5-23 (217)
457 2ipc_A Preprotein translocase 66.9 14 0.00049 37.2 7.5 58 274-337 115-176 (997)
458 3d31_A Sulfate/molybdate ABC t 66.8 2.8 9.6E-05 37.3 2.5 26 73-100 25-50 (348)
459 1g29_1 MALK, maltose transport 66.5 3.6 0.00012 37.0 3.2 25 73-99 28-52 (372)
460 1pzn_A RAD51, DNA repair and r 66.5 3.7 0.00013 36.6 3.2 22 75-96 132-153 (349)
461 2bbw_A Adenylate kinase 4, AK4 66.5 3.3 0.00011 34.7 2.8 18 74-91 27-44 (246)
462 3k1j_A LON protease, ATP-depen 66.4 4.4 0.00015 39.3 3.9 22 70-91 56-77 (604)
463 2ghi_A Transport protein; mult 66.4 2.9 9.8E-05 35.5 2.4 26 73-100 45-70 (260)
464 3foj_A Uncharacterized protein 66.3 5.1 0.00018 27.9 3.4 36 278-313 55-90 (100)
465 3b5x_A Lipid A export ATP-bind 66.0 4.6 0.00016 38.9 4.0 27 72-100 367-393 (582)
466 1uf9_A TT1252 protein; P-loop, 66.0 3.2 0.00011 33.3 2.6 17 76-92 10-26 (203)
467 2og2_A Putative signal recogni 65.9 3.6 0.00012 36.8 3.0 16 76-91 159-174 (359)
468 3iwh_A Rhodanese-like domain p 65.6 4.9 0.00017 28.4 3.1 36 278-313 55-90 (103)
469 4e22_A Cytidylate kinase; P-lo 65.5 3.5 0.00012 34.8 2.7 19 73-91 26-44 (252)
470 3ice_A Transcription terminati 65.2 6 0.00021 35.7 4.2 28 65-92 162-192 (422)
471 3eme_A Rhodanese-like domain p 65.2 5 0.00017 28.2 3.1 36 278-313 55-90 (103)
472 3dkp_A Probable ATP-dependent 65.0 8.9 0.00031 31.8 5.2 74 279-355 98-183 (245)
473 2p5t_B PEZT; postsegregational 64.7 2.1 7.3E-05 36.1 1.2 18 75-92 33-50 (253)
474 2grj_A Dephospho-COA kinase; T 64.6 3.7 0.00013 33.0 2.6 17 77-93 15-31 (192)
475 2xb4_A Adenylate kinase; ATP-b 64.6 3.6 0.00012 33.9 2.6 17 76-92 2-18 (223)
476 1rz3_A Hypothetical protein rb 64.4 3.6 0.00012 33.2 2.5 17 75-91 23-39 (201)
477 3qks_A DNA double-strand break 64.3 3.8 0.00013 33.2 2.6 17 75-91 24-40 (203)
478 2zu0_C Probable ATP-dependent 64.1 3.5 0.00012 35.1 2.5 18 73-90 45-62 (267)
479 1j8m_F SRP54, signal recogniti 64.0 4.4 0.00015 35.2 3.1 20 76-95 100-119 (297)
480 2xxa_A Signal recognition part 63.9 4.4 0.00015 37.4 3.2 24 76-99 102-125 (433)
481 2wv9_A Flavivirin protease NS2 63.9 9.9 0.00034 37.3 5.9 68 106-186 411-478 (673)
482 1vht_A Dephospho-COA kinase; s 63.6 3.1 0.00011 34.0 2.1 18 75-92 5-22 (218)
483 1odf_A YGR205W, hypothetical 3 63.5 3.7 0.00013 35.5 2.6 16 76-91 33-48 (290)
484 2d2e_A SUFC protein; ABC-ATPas 63.5 3.6 0.00012 34.7 2.4 18 73-90 28-45 (250)
485 4f4c_A Multidrug resistance pr 63.0 4.8 0.00017 43.0 3.8 27 73-101 1104-1130(1321)
486 3b60_A Lipid A export ATP-bind 62.8 4.4 0.00015 39.1 3.2 26 73-100 368-393 (582)
487 1oxx_K GLCV, glucose, ABC tran 62.7 2.9 0.0001 37.3 1.8 25 73-99 30-54 (353)
488 2jeo_A Uridine-cytidine kinase 62.6 3.7 0.00013 34.3 2.4 18 74-91 25-42 (245)
489 1fuu_A Yeast initiation factor 62.4 22 0.00077 31.7 7.8 73 278-355 88-170 (394)
490 3qf4_B Uncharacterized ABC tra 62.4 4.6 0.00016 39.1 3.2 26 73-100 380-405 (598)
491 2nq2_C Hypothetical ABC transp 62.3 3.7 0.00013 34.7 2.3 25 73-99 30-54 (253)
492 2vhj_A Ntpase P4, P4; non- hyd 62.1 3.4 0.00012 36.2 2.0 24 72-95 121-144 (331)
493 4a82_A Cystic fibrosis transme 62.0 4.2 0.00014 39.1 2.9 18 73-90 366-383 (578)
494 2jlq_A Serine protease subunit 62.0 11 0.00037 34.9 5.6 67 107-186 190-256 (451)
495 1ls1_A Signal recognition part 61.8 4.9 0.00017 34.8 3.0 20 74-93 98-117 (295)
496 3qkt_A DNA double-strand break 61.5 3.5 0.00012 36.6 2.1 17 76-92 25-41 (339)
497 1uj2_A Uridine-cytidine kinase 61.3 3.6 0.00012 34.6 2.1 17 76-92 24-40 (252)
498 4a2p_A RIG-I, retinoic acid in 61.3 12 0.00042 35.4 6.1 73 279-355 55-138 (556)
499 2yl4_A ATP-binding cassette SU 61.3 4.7 0.00016 39.0 3.1 26 73-100 369-394 (595)
500 1ry6_A Internal kinesin; kines 61.2 5.3 0.00018 35.7 3.2 19 74-92 83-103 (360)
No 1
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.8e-60 Score=442.68 Aligned_cols=383 Identities=76% Similarity=1.212 Sum_probs=350.4
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
.+++|+++++++.+.+.+...|+..|+|+|.++++.++.++++++.+|||+|||++++++++..+.....+.++||++|+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 45679999999999999999999999999999999999999999999999999999999999888766656689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
++|+.|+.+.++++....+++++..+.|+.........+..+.++|+|+||+++..++......+.++++||+||||.+.
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 99999999999999877778999999999888777777766667999999999999998888888999999999999998
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHH
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 274 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (418)
+..++...+..+....+...+++++|||++......+..++.++..+................+.......+...+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 75567777888888888889999999999999999999999998888776666556667777888888888888899999
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
....++++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCCC
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 417 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (418)
+.|+|...|.||+||+||.|++|.+++++.+.++...++.+++.++..+++++..++.+.|++
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 388 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCCGGGTSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccccHHHHhh
Confidence 999999999999999999999999999999888889999999999999999999999998876
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.9e-59 Score=438.52 Aligned_cols=373 Identities=29% Similarity=0.515 Sum_probs=333.5
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-----CCCeeEE
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTAL 109 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-----~~~~~~l 109 (418)
+..+|+++++++.+++.+.+.|+..|+|+|+++++.+++++++++++|||+|||++|+++++..+... ..++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 45679999999999999999999999999999999999999999999999999999999998776432 2355899
Q ss_pred EecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEec
Q 014801 110 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 189 (418)
Q Consensus 110 ii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 189 (418)
|++||++|+.|+.+.++++.... ++++..++|+.....+...+..+ .+|+|+||+++..++.+....+.+++++|+||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred EEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 99999999999999999998765 78888999998887776666554 69999999999999998888899999999999
Q ss_pred hhhhccCCCCHHHHHHHHhhC--CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH
Q 014801 190 CDKMLESLDMRRDVQEIFKMT--PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 267 (418)
Q Consensus 190 ~h~~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
||.+.+ .++...+..+.... ....|++++|||++..+..++..++.++..+...... .......+.+..+....+.
T Consensus 212 ah~~~~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 212 ADRMLD-MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp HHHHTS-TTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHH
T ss_pred Hhhhhc-cCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHH
Confidence 999987 68999999888774 5678999999999999999999999888777665443 2345566777778888888
Q ss_pred HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 268 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
..+.+++.....+ +||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 290 ~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 290 SKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 8888888877644 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccccc
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (418)
+++||+++.|.+...|.||+||+||.|+.|.+++|+.+.++....+.+.+.++...+++|.++.+
T Consensus 369 v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 369 IKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred CCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999998888888999999999999999988753
No 3
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.8e-57 Score=424.50 Aligned_cols=377 Identities=40% Similarity=0.654 Sum_probs=332.3
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
....+|+++++++.+.+.+...|+..|+++|.++++.++.++++++.+|||+|||++++++++..+.....+.+++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 34567999999999999999999999999999999999999999999999999999999999988876655668999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
+++|+.|+.+.++++.... ++++..+.|+.........+.. ..+|+|+||+.+...+......+.++++||+||+|.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNE-TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcC-CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 9999999999999988766 7888888888776655544443 4699999999999988887778899999999999998
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHH
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 273 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (418)
.+ .++...+..+....+...+++++|||++......+..+...+........ .......+.+.......+...+..+
T Consensus 176 ~~-~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LS-RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SS-HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hh-hchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHH
Confidence 76 46777788888888888999999999999888888888888765543322 3344556666667777788888888
Q ss_pred HhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE
Q 014801 274 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 353 (418)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~ 353 (418)
+.....+++||||++.+.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~ 332 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN 332 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccccCCCC
Q 014801 354 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 416 (418)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++.|+|...|.||+||+||.|++|.+++++. .++...++.+++.++.++++++..+.++.|.
T Consensus 333 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 394 (400)
T 1s2m_A 333 FDFPKTAETYLHRIGRSGRFGHLGLAINLIN-WNDRFNLYKIEQELGTEIAAIPATIDKSLYV 394 (400)
T ss_dssp SSCCSSHHHHHHHHCBSSCTTCCEEEEEEEC-GGGHHHHHHHHHHHTCCCEECCSSCCGGGTC
T ss_pred eCCCCCHHHHHHhcchhcCCCCCceEEEEec-cchHHHHHHHHHHhCCCccccccccccccee
Confidence 9999999999999999999999999999998 5566778899999999999999998887763
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.9e-56 Score=421.71 Aligned_cols=371 Identities=36% Similarity=0.647 Sum_probs=329.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++.+.+.+...|+..|+++|+++++.++.++++++++|||+|||++++++++..+.....+.++||++|++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 35699999999999999999999999999999999999999999999999999999999998887555556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++.... ++.+..+.|+.....+...+..+ .+|+|+||+.+...+......+.++++||+||+|.+.+
T Consensus 116 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp HHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999988766 78899999998877766666554 59999999999999998888889999999999999987
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechh-hHHHHHHHHH
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 274 (418)
.++...+..+....+...+++++|||++.....+...++.++..+..... ........+.+...... .+...+..++
T Consensus 194 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 194 -KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp -TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG-GCSCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc-cccCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 67888899999888888999999999998887778888888876654332 22344555566555543 3777888888
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
.....+++||||++.+.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 272 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
+.|++...|.||+||+||.|++|.+++++. .++...++.+++.++.+++++|....
T Consensus 352 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 352 DLPNNRELYIHRIGRSGRYGRKGVAINFVK-NDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEE-GGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEec-HHHHHHHHHHHHHhCCCceecccchh
Confidence 999999999999999999999999999998 67788899999999999999987654
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.3e-56 Score=420.78 Aligned_cols=373 Identities=39% Similarity=0.657 Sum_probs=316.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.....+.+++|++|++
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 35799999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++.... +..+..+.|+.........+.....+|+|+||+++...+......+.++++||+||||.+.+
T Consensus 119 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp HHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhc
Confidence 99999999999988776 78888888888877777777656679999999999999988888888999999999999887
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech-hhHHHHHHHHH
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 274 (418)
.++...+..+........+++++|||++.........++.++..+...... .......+.+..... ..+...+..++
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 198 -RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp -TTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred -cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 688889999999998899999999999999888888888888766544332 334455555655544 34778888888
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 276 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 276 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 355 (414)
T ss_dssp HSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEES
T ss_pred HhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEe
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (418)
+.|.|...|.||+||+||.|++|.+++++. .++...++.+++.++..+++++..+.+
T Consensus 356 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 356 DLPTNRENYIHRIGRGGRFGRKGVAINMVT-EEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp SCCSSTHHHHHHSCCC-------CEEEEEC-STHHHHHHHHHHHTTCCCEECCC----
T ss_pred CCCCCHHHhhhhcCcccCCCCCceEEEEEc-HHHHHHHHHHHHHHcCCccccChhhhh
Confidence 999999999999999999999999999998 667788999999999999999887654
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-56 Score=419.71 Aligned_cols=374 Identities=31% Similarity=0.500 Sum_probs=320.2
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC----------
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---------- 103 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~---------- 103 (418)
-+..+|+++++++.+.+.+...|+..|+|+|.++++.++.++++++++|||+|||++++++++..+....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3456799999999999999999999999999999999999999999999999999999999887653211
Q ss_pred --------CCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC
Q 014801 104 --------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK 175 (418)
Q Consensus 104 --------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 175 (418)
..+++||++|+++|+.|+.+.++++.... ++++..+.|+.........+..+ .+|+|+||+++..++...
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERG 169 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTT
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCC-CCEEEEChHHHHHHHHcC
Confidence 22479999999999999999999987665 78999999998877766666554 699999999999999988
Q ss_pred CCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC--CC--CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCccccc
Q 014801 176 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT--PH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 251 (418)
Q Consensus 176 ~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~--~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
...+.++++||+||+|.+.+ .++...+..+.... .. ..+++++|||++.....++..++.++......... ...
T Consensus 170 ~~~~~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 247 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STS 247 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHH-TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CC
T ss_pred CcChhhCcEEEEEChhHhhc-cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCc
Confidence 88899999999999999987 57888888887742 22 57899999999998888888888888766554332 234
Q ss_pred ccceEEEEEechhhHHHHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCc
Q 014801 252 HGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 330 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 330 (418)
..+.+.+.......+...+.+++... .++++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.
T Consensus 248 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 248 ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp SSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred cCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC
Confidence 45566677777778888888888876 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 331 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 331 ~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+|||||+++++|+|+|++++||+++.|.|...|.||+||+||.|+.|.+++++. ..+....+.+.+.+.....+++.++
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC-GGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc-cccHHHHHHHHHHHHHhcCcCCHHH
Confidence 999999999999999999999999999999999999999999999999999998 5566667777777777777777665
Q ss_pred cc
Q 014801 411 DT 412 (418)
Q Consensus 411 ~~ 412 (418)
.+
T Consensus 407 ~~ 408 (417)
T 2i4i_A 407 EN 408 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.1e-55 Score=413.94 Aligned_cols=372 Identities=34% Similarity=0.561 Sum_probs=322.5
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEe
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 111 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii 111 (418)
.+..+|+++++++.+.+.+.+.|+..|+++|.++++.++.+ +++++++|||+|||++++++++..+......++++|+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 34567999999999999999999999999999999999987 8999999999999999999999988877666789999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEech
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDEC 190 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE~ 190 (418)
+|+++|+.|+.+.++++....++..+....++....... ....+|+|+||+.+..++.. ....+.++++||+||+
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 999999999999999998776678888887775543221 23469999999999998865 4556788999999999
Q ss_pred hhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec-hhhHHHH
Q 014801 191 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRK 269 (418)
Q Consensus 191 h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 269 (418)
|.+....++...+..+....+...+++++|||++.........+..++..+...... .......+.+.... ...+...
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQA 256 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHHHH
Confidence 999875688888888888888899999999999999888999988888766554433 23444555555554 3567777
Q ss_pred HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCC
Q 014801 270 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 349 (418)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~ 349 (418)
+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 257 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 257 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC------ChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 350 IVINYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 350 ~vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+||+++.|+ +...|.||+||+||.|+.|.++++++..++...++.+++.++..++.++..-
T Consensus 337 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp EEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred EEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999994 6789999999999999999999999988888999999999999998887543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.3e-55 Score=409.54 Aligned_cols=366 Identities=31% Similarity=0.562 Sum_probs=319.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
..+|+++++++++.+.+...|+..|+|+|.++++.++.+ +++++++|||+|||++++++++..+.....+.++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 367999999999999999999999999999999999998 899999999999999999999998876666668999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
+++|+.|+.+.++++.... ++.+....++...... ....+|+|+||+.+...+......+.++++||+||||.+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 9999999999999987665 6777777665432211 223699999999999999888888999999999999999
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe-chhhHHHHHHH
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLND 272 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 272 (418)
.+..++...+..+....+...+++++|||++.........+..++......... .........+... ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 158 LDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHH
Confidence 876678888888888888889999999999998888888888877665544332 2334445555555 34566777888
Q ss_pred HHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEE
Q 014801 273 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 352 (418)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi 352 (418)
++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp HHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC------ChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhc-cCccccCc
Q 014801 353 NYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFE-VDIKELPE 408 (418)
Q Consensus 353 ~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 408 (418)
+++.|+ |...|.||+||+||.|+.|.+++++...++...++.+++.++ .+++.++.
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 999998 999999999999999999999999998888899999999988 77776664
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.9e-54 Score=398.47 Aligned_cols=362 Identities=36% Similarity=0.598 Sum_probs=317.9
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC-CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~-~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
....+|+++++++.+.+.+.+.|+..|+++|.++++.++++ +++++.+|||+|||++++++++..+.... +.++++++
T Consensus 3 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-~~~~lil~ 81 (367)
T 1hv8_A 3 VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-GIEAIILT 81 (367)
T ss_dssp CCCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-SCCEEEEC
T ss_pred cccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC-CCcEEEEc
Confidence 34567999999999999999999999999999999999988 69999999999999999998888776543 34899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 192 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~ 192 (418)
|+++|+.|+.+.++++.... ++.+..+.|+.........+.. .+|+|+||+.+...+......+.+++++|+||+|.
T Consensus 82 P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKN--ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHT--CSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCC--CCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999988665 7888889988877665555553 59999999999999888888889999999999999
Q ss_pred hccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHH
Q 014801 193 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 272 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (418)
+.+ .++...+..+........+++++|||++......+..++.+......... ....+.+.......+...+..
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 159 MLN-MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHT-TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHH
T ss_pred hhh-hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHH
Confidence 987 57888888888888888999999999999888888888776544433221 244566677777777777777
Q ss_pred HHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEE
Q 014801 273 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 352 (418)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi 352 (418)
++. ..+.++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 233 ~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 233 LLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred HHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 776 4567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 353 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+++.|+|...|.||+||+||.|++|.+++++. ..+...++.+++.++.+++.++
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIIN-RREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC-TTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEc-HHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999998 5677788999999999888764
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-55 Score=413.95 Aligned_cols=370 Identities=39% Similarity=0.654 Sum_probs=183.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
...|+++++++.+.+.+...|+.+|+++|+++++.++.++++++.+|||+|||++++++++..+.....++++||++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 45699999999999999999999999999999999999999999999999999999999998887666666899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++.... ++++..+.|+.........+.. .+|+|+||+.+...+......+.++++||+||+|.+.+
T Consensus 100 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 99999999999987665 7899999998877666555543 59999999999999888888889999999999999887
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhh-HHHHHHHHH
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 274 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 274 (418)
.++...+..+....+...+++++|||++.........++.++..+....... ........+....... +...+..++
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 177 -SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp -TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred -CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHHHHHHHHH
Confidence 5788889999988888899999999999988888888888887766554322 2223333333333322 556666777
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEe
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 354 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~ 354 (418)
.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 255 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 255 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 355 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
+.|+|...|.||+||+||.|++|.+++++. .++...++.+++.++..+++++..+.
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCceEEEEEc-hhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999999999999999998 55677788999999999998887653
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-54 Score=417.02 Aligned_cols=370 Identities=34% Similarity=0.572 Sum_probs=178.2
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
+..+|.++++++.+.+.+...|+..|+++|.++++.++.+ +++++++|||+|||++|+++++..+......+++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 3457999999999999999999999999999999999987 89999999999999999999999988777777899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEechh
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECD 191 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE~h 191 (418)
|+++|+.|+.+.++++....+++.+....++....... ....+|+|+||+.+..++.+ ....+.++++||+||+|
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 99999999999999998776678888877765443221 22358999999999998865 44567899999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEech-hhHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKL 270 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 270 (418)
.+.+..++...+..+....+...+++++|||++.....++..++.++..+....... ......+.+..+.. ..+...+
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHHH
Confidence 998756788888888888888999999999999998889998888877766554322 33334444444432 3455666
Q ss_pred HHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCE
Q 014801 271 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI 350 (418)
Q Consensus 271 ~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~ 350 (418)
..++.....+++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 66666667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC------ChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcc
Q 014801 351 VINYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 409 (418)
Q Consensus 351 vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
||+++.|. +...|.||+||+||.|+.|.+++++...++..+++.+++.++..++.++..
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 99999994 668999999999999999999999998888899999999999888887654
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.9e-51 Score=374.26 Aligned_cols=335 Identities=33% Similarity=0.546 Sum_probs=284.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 123 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~ 123 (418)
+++++.+.+...|+..|+|+|+++++.+.+++++++.+|||+|||++++++++.. +.++++++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999888875 2379999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHH
Q 014801 124 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 203 (418)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~ 203 (418)
.++++.... +.++..+.|+.........+.. .+|+|+||+.+.+.+......+.++++||+||+|.+.+ .++...+
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~~ 150 (337)
T 2z0m_A 75 HIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE-MGFIDDI 150 (337)
T ss_dssp HHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH-TTCHHHH
T ss_pred HHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc-cccHHHH
Confidence 999987665 7889899998877666555544 59999999999998888777788999999999999987 5788888
Q ss_pred HHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEE
Q 014801 204 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVV 283 (418)
Q Consensus 204 ~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 283 (418)
..+....+...+++++|||++......+..+..++..+... .........+.......+ .....+....++++|
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 224 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVI 224 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEE
Confidence 88888888888999999999999888888888776655322 223334444554443322 222455666778999
Q ss_pred EEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhh
Q 014801 284 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTY 363 (418)
Q Consensus 284 if~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~ 363 (418)
|||++.+.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|...|
T Consensus 225 vf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 300 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300 (337)
T ss_dssp EECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHH
T ss_pred EEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHh
Confidence 99999999999998886 57899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhc
Q 014801 364 LHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFE 400 (418)
Q Consensus 364 ~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (418)
.||+||+||.|++|.+++++. .+....+.+++.++
T Consensus 301 ~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 301 IHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC----
T ss_pred hHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhc
Confidence 999999999999999999998 56666777766654
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.8e-51 Score=402.76 Aligned_cols=360 Identities=25% Similarity=0.422 Sum_probs=295.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhh--cCCcEEEEccCCCchhhHHHHHhhhccCCC----CCCeeEEEecCcHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTREL 117 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~----~~~~~~lii~P~~~l 117 (418)
+++++++++...|+..|+|+|.++++.++ .++++++++|||+|||++|+++++..+... ...+++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 678999999999999999999999776433 234589999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEechhhh
Q 014801 118 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 193 (418)
Q Consensus 118 ~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~~ 193 (418)
+.|+.+.++++... .+.+.+..+.|+.........+....++|+|+||+++..++... ...+..+++||+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999999987642 23567888888888777766665555799999999999877653 345788999999999999
Q ss_pred ccCCCCHHHHHHHHhhC-------CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCc---ccccccceEEEEEech
Q 014801 194 LESLDMRRDVQEIFKMT-------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---KLTLHGLVQHYIKLSE 263 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 263 (418)
.+ .++...+..+...+ ....+++++|||+++.+..++..++.++......... ......+.+.+.....
T Consensus 188 ~~-~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 188 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 87 57888777666543 2367899999999998888888888887766554322 2222334444444432
Q ss_pred h--hHH---HHHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCccEEE
Q 014801 264 L--EKN---RKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 334 (418)
Q Consensus 264 ~--~~~---~~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 334 (418)
. ... ..+...+.. ..+.++||||++++.++.+++.|.+. ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 1 122 222333333 45689999999999999999999876 88999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccc
Q 014801 335 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 405 (418)
Q Consensus 335 ~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++++. .++..+++.+++.....+..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~-~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC-KDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE-GGGHHHHHHHHHHHCCCCCE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEc-ccHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999 56777888888877666544
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-52 Score=404.02 Aligned_cols=364 Identities=30% Similarity=0.529 Sum_probs=266.3
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 39 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 39 ~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
|...++++.+.+.+...|+..|+++|.++++.++++ +++++++|||+|||++++++++..+.....+.++||++|+++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 455567888999999999999999999999999998 899999999999999999999998877766668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+.+.++++.... ++.+....++..... .....+|+|+||+.+...+......+.++++||+||||.+.+.
T Consensus 201 L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 201 LARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp HHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred HHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 9999999999987554 455544444322111 1224699999999999998888888999999999999999876
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEe-chhhHHHHHHHHHh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLD 275 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 275 (418)
.++...+..+....+...+++++|||++.....+...+..++..+...... .........+... ....+...+..++.
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEE-LSVEGIKQLYMDCQSEEHKYNVLVELYG 353 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecccc-CCcccceEEEEECCchHHHHHHHHHHHH
Confidence 678888999999998899999999999988888888888887665443332 2233334444444 34556677788888
Q ss_pred hcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec
Q 014801 276 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 355 (418)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~ 355 (418)
...++++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcc
Q 014801 356 MP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 409 (418)
Q Consensus 356 ~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
.| .|...|.||+||+||.|++|.+++++...++...++.+++.++..++.++..
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99 7899999999999999999999999998888888999999999999888754
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.6e-51 Score=398.84 Aligned_cols=360 Identities=25% Similarity=0.426 Sum_probs=293.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhh--cCCcEEEEccCCCchhhHHHHHhhhccCCCC----CCeeEEEecCcHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTREL 117 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~----~~~~~lii~P~~~l 117 (418)
+++++.+.+...|+..|+|+|.++++.++ .++++++++|||+|||++|+++++..+.... ...++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 5789999999999999999999998764432 23489999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEechhhh
Q 014801 118 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 193 (418)
Q Consensus 118 ~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~~ 193 (418)
+.|+.+.++++... .+...+..+.|+.........+....++|+|+||+++..++.+. ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 23567888888888777666665545799999999999877653 335788999999999999
Q ss_pred ccCCCCHHHHHHHHhhC-------CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCc---ccccccceEEEEEech
Q 014801 194 LESLDMRRDVQEIFKMT-------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---KLTLHGLVQHYIKLSE 263 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 263 (418)
.+ .++...+..+...+ ....|++++|||++..+..++..++.++......... ......+.+.+.....
T Consensus 239 ~~-~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 239 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-cchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 87 56887777665443 3367899999999998888888888887766554322 2223334444444432
Q ss_pred h-hH----HHHHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCccEEE
Q 014801 264 L-EK----NRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 334 (418)
Q Consensus 264 ~-~~----~~~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 334 (418)
. .. ...+...+.. ..+.++||||++++.++.+++.|.+. ++.+..+|+++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1 11 2222222322 46789999999999999999999876 88999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccc
Q 014801 335 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 405 (418)
Q Consensus 335 ~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
||+++++|+|+|++++||+++.|.|...|+||+||+||.|+.|.+++++. .++...++.+++..+..++.
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~-~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC-KDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE-GGGHHHHHHHHHHHCCCCCE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc-hhHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999 56777888888776665554
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-48 Score=377.45 Aligned_cols=334 Identities=18% Similarity=0.211 Sum_probs=266.3
Q ss_pred ccCCCCCHHHHHHHHH-CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 39 FRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 39 ~~~~~l~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
+.++++++.+.+.|.. .|+..|+|+|.++++.++.++++++.+|||+|||++|+++++..- .++||++|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~------g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD------GFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS------SEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC------CcEEEEeCHHHH
Confidence 3457889999999998 499999999999999999999999999999999999999987641 289999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh-----hcCCCcEEEeccHHHH------HHHhcCCCCCCCccEEE
Q 014801 118 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL-----KNECPQIVVGTPGRIL------ALARDKDLSLKNVRHFI 186 (418)
Q Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~v~T~~~l~------~~~~~~~~~~~~~~~iV 186 (418)
+.|+.+.++++ ++++..+.|+.........+ ..+..+|+|+||+++. ..+.. ...+.++++||
T Consensus 97 ~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iV 170 (591)
T 2v1x_A 97 MEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEE
T ss_pred HHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEE
Confidence 99999999887 78888898887766554332 2456799999999874 22222 23467889999
Q ss_pred EechhhhccC-CCCHHHHHH---HHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEec
Q 014801 187 LDECDKMLES-LDMRRDVQE---IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 262 (418)
Q Consensus 187 iDE~h~~~~~-~~~~~~~~~---~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
|||||++..+ ++|...+.. +.... +..+++++|||++......+..++..+....+.... ....+........
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQKP 247 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEECC
T ss_pred EECcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEeCC
Confidence 9999998764 235444432 33333 467899999999988877777766654333332221 1112222222221
Q ss_pred --hhhHHHHHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEeccc
Q 014801 263 --ELEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 339 (418)
Q Consensus 263 --~~~~~~~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l 339 (418)
.......+..++.. ..+.++||||++++.++.+++.|.+.++.+..+|++++..+|..+++.|.+|+.+|||||+++
T Consensus 248 ~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 22344555566653 367899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 340 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
++|+|+|++++||+++.|.|...|.|++||+||.|++|.+++++.+.+
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 999999999999999999999999999999999999999999998543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-48 Score=375.82 Aligned_cols=333 Identities=17% Similarity=0.241 Sum_probs=267.5
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 38 GFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
+|+++++++.+.+.|.. .|+..|+|+|.++++.++.++++++.+|||+|||++|+++++... .++||++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------g~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------GLTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS------SEEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC------CCEEEECChHH
Confidence 68899999999999998 699999999999999999999999999999999999999888542 27999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
|+.|+.+.++.+ ++++..+.++........ .+..+..+|+++||+++........+...++++|||||+|++
T Consensus 77 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 77 LMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 999999999876 788888888876554432 234456799999999995321111123467889999999999
Q ss_pred ccC-CCCHHHHHH---HHhhCCCCccEEEEEecCCccHHHHHHHhcC-CCeEEEEcCCcccccccceEEEEEechhhHHH
Q 014801 194 LES-LDMRRDVQE---IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 268 (418)
Q Consensus 194 ~~~-~~~~~~~~~---~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
..+ +++...+.. +.... +..+++++|||++......+..++. ............ ..+ .+.......+..
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~~l--~~~v~~~~~~~~ 225 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR---PNI--RYMLMEKFKPLD 225 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC---TTE--EEEEEECSSHHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC---Cce--EEEEEeCCCHHH
Confidence 764 345555443 33444 3578999999999876554444332 222222222221 111 222233345566
Q ss_pred HHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 269 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
.+..++....++++||||++++.++.+++.|.+.++.+..+|++++.++|..+++.|.+|+.+|||||+++++|+|+|++
T Consensus 226 ~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v 305 (523)
T 1oyw_A 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNV 305 (523)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTC
T ss_pred HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCc
Confidence 67777777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 349 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
++||+++.|.|...|.|++||+||.|++|.+++++++.+
T Consensus 306 ~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred cEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 999999999999999999999999999999999998543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.6e-47 Score=358.38 Aligned_cols=329 Identities=19% Similarity=0.291 Sum_probs=255.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 47 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 47 ~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
++.+.+.+....+|+|+|.++++.++.++++++++|||+|||++++++++..... +++++|++|+++|+.|+.+.++
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHHH
Confidence 3445555532338999999999999999999999999999999988888877633 3389999999999999999999
Q ss_pred HHhccCCCceEEEEEcCcch---HHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-------
Q 014801 127 RFSTYLPDIKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------- 196 (418)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~------- 196 (418)
++.. . ++++..++|+... ......+..+.++|+|+||+.+...+.. ..+.++++||+||||++..+
T Consensus 86 ~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 86 KLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 9876 3 8999999999887 4444555556579999999999887764 56678999999999987642
Q ss_pred ---CCCHHH-HHHHHhhCC-----------CCccEEEEEec-CCccHH-HHHHHhcCCCeEEEEcCCcccccccceEEEE
Q 014801 197 ---LDMRRD-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI 259 (418)
Q Consensus 197 ---~~~~~~-~~~~~~~~~-----------~~~~~i~lSAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
.++... +..+...++ ...+++++||| .+.... .+...+..-. . .........+.+.+.
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~~ 236 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----V-GRLVSVARNITHVRI 236 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----S-SCCCCCCCSEEEEEE
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----c-Cccccccccchheee
Confidence 345555 666666544 67899999999 554433 3333333210 0 111122233444444
Q ss_pred EechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHhhhcCCccEEEE---
Q 014801 260 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA--- 335 (418)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~--- 335 (418)
.. .+...+..++.. .++++||||++++.++.+++.|.+.++.+. .+||. +|. ++.|++|+++||||
T Consensus 237 ~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s 306 (414)
T 3oiy_A 237 SS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQA 306 (414)
T ss_dssp SS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECC
T ss_pred cc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecC
Confidence 33 344455666665 348999999999999999999999999998 88884 344 99999999999999
Q ss_pred -ecccccCCCCCC-CCEEEEecCC--CChhhhhhhcccccCCC----CceeEEEEecCCCcHHHHHHHHHHhc
Q 014801 336 -TDLVGRGIDIER-VNIVINYDMP--DSADTYLHRVGRAGRFG----TKGLAITFVSSASDSDILNQVQARFE 400 (418)
Q Consensus 336 -t~~l~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (418)
|+++++|+|+|+ +++||+++.| .|...|.||+||+||.| ..|.+++++ ++...++.+++.++
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 478999888 56667777777776
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-45 Score=369.54 Aligned_cols=358 Identities=20% Similarity=0.233 Sum_probs=265.9
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
...+|+++++++++.+.+...|+..|+++|.++++. +..++++++++|||+|||+++.++++..+... +.++++++|
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P 83 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTP 83 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECS
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 446799999999999999999999999999999999 77899999999999999999999998776522 238999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 193 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~ 193 (418)
+++|+.|+++.++.+.. . ++++..++|+...... .+. ..+|+|+||+++..++++....++++++||+||+|.+
T Consensus 84 ~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~~--~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 84 LRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WLK--NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp CHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GGG--GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG
T ss_pred cHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hcC--CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc
Confidence 99999999999965543 3 7889888887654432 122 3699999999999998887666889999999999998
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccc---------eEEEEEec--
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL---------VQHYIKLS-- 262 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 262 (418)
.+ ..+...+..+....+ ..++++||||+++. ..+...+ ..+. ............. ........
T Consensus 158 ~~-~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 158 ND-PERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAEP--VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GC-TTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCEE--EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred CC-cccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCCc--cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 75 466666666665554 78999999999853 4444433 3211 1000000000000 00000000
Q ss_pred ------hhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCC---------------------------------
Q 014801 263 ------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN--------------------------------- 303 (418)
Q Consensus 263 ------~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~--------------------------------- 303 (418)
.......+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp EEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 1233344444443 56899999999999999999987642
Q ss_pred ---CCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec-------CCCChhhhhhhccc
Q 014801 304 ---FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-------MPDSADTYLHRVGR 369 (418)
Q Consensus 304 ---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR 369 (418)
..+..+|++++..+|..+++.|.+|.++|||||+++++|+|+|++++||. |+ .|.|..+|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 24888999999999999999999999999999999999999999999998 88 78999999999999
Q ss_pred ccCCC--CceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 370 AGRFG--TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 370 ~~R~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
|||.| ..|.|+.++...++ ....+++.+....+.+...+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~~--~~~~~~~~l~~~~e~~~s~l 430 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKED--VDRVFKKYVLSDVEPIESKL 430 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGGG--HHHHHHHTTSSCCCCCCCSC
T ss_pred cCCCCCCCCceEEEEeCCchH--HHHHHHHHHcCCCCCceecC
Confidence 99987 47899999875543 22334444455555555444
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.7e-46 Score=373.23 Aligned_cols=352 Identities=18% Similarity=0.222 Sum_probs=269.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
+|+++++++++.+.+...|+..|+++|.++++. +..++++++++|||+|||+++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88899999999999999999999988766522 238999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+++.++++... ++++..++|+....... . +..+|+|+||+++..++++....++++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~- 152 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW--L--GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS- 152 (720)
T ss_dssp GHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG--G--GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-
T ss_pred HHHHHHHHHHHHHhc--CCEEEEecCCCCccccc--c--CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-
Confidence 999999999755433 78999999976544321 1 2369999999999998888766688999999999999876
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEE-----EEec------hhh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY-----IKLS------ELE 265 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~ 265 (418)
......+..+...+....+++++|||+++. ..+.. |+.... .. ..... ..+...+ .... ...
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~--~~-~~~rp--~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL--IV-SDWRP--VKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE--EE-CCCCS--SEEEEEEEETTEEEETTSCEEECSS
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc--cC-CCCCC--CcceEEEEeCCeeeccccchhhhhH
Confidence 466677777776665689999999999863 44443 333211 11 11000 0011111 0010 122
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC---------------------------------CCCeEEecCC
Q 014801 266 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------------------------------NFPSICIHSG 312 (418)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~---------------------------------~~~~~~~~~~ 312 (418)
....+.+.+. +++++||||++++.++.++..|.+. ...+..+|++
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 2334444443 4589999999999999999988753 1248899999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec----CCCChhhhhhhcccccCCC--CceeEEEE
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD----MPDSADTYLHRVGRAGRFG--TKGLAITF 382 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~~--~~g~~~~~ 382 (418)
++..+|..+++.|.+|.++|||||+++++|+|+|++++||. |+ .|.|..+|.||+|||||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999997 55 5889999999999999988 47889999
Q ss_pred ecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 383 VSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+...+ ....+++.+..+.+++...+
T Consensus 384 ~~~~~---~~~~~~~~~~~~~~~i~s~l 408 (720)
T 2zj8_A 384 STSDD---PREVMNHYIFGKPEKLFSQL 408 (720)
T ss_dssp CSSSC---HHHHHHHHTTSCCCCCCCCT
T ss_pred ecCcc---HHHHHHHHhcCCCCCcEeec
Confidence 88655 22334455656666665554
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.5e-46 Score=371.20 Aligned_cols=354 Identities=16% Similarity=0.250 Sum_probs=261.8
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 38 GFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 38 ~~~~~~--l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
+|++++ +++.+.+.+...|+.+|+++|.++++.+.+++++++++|||+|||+++.++++..+..+ .++++++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcH
Confidence 477777 89999999999999999999999999999999999999999999999999998876543 3899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++.. . ++++..++|+....... .+..+|+|+||+++..++++....++++++||+||+|.+.+
T Consensus 79 ~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 79 ALAGEKYESFKKWEK-I-GLRIGISTGDYESRDEH----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp HHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSSC----STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchhh----ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC
Confidence 999999999965432 3 78999999876544321 12469999999999999988766688999999999999876
Q ss_pred CCCCHHHHHHHHhh---CCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccc-----cceEEEEEe-----c
Q 014801 196 SLDMRRDVQEIFKM---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH-----GLVQHYIKL-----S 262 (418)
Q Consensus 196 ~~~~~~~~~~~~~~---~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~ 262 (418)
......+..+... .....+++++|||+++ ...+.. |+..+. ........... .....+... .
T Consensus 153 -~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 153 -EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY--YVSDWRPVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp -TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE--EECCCCSSCEEEEEECSSEEEEEETTEEEEE
T ss_pred -CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc--ccCCCCCccceEEEeeCCeeeccCcchhhhh
Confidence 3455555444433 3567899999999986 344444 443221 11110000000 000011110 0
Q ss_pred hhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC------------------------------CCCeEEecCC
Q 014801 263 ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------------------------------NFPSICIHSG 312 (418)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~------------------------------~~~~~~~~~~ 312 (418)
.......+.+.+. +++++||||++++.++.+++.|.+. +..+..+|++
T Consensus 228 ~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 228 RVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp ECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 0013344444443 4689999999999999999888642 1357889999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec---CCCChhhhhhhcccccCCC--CceeEEEEe
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD---MPDSADTYLHRVGRAGRFG--TKGLAITFV 383 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~~--~~g~~~~~~ 383 (418)
++.++|..+++.|.+|.++|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|+.++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 55 6889999999999999988 478899998
Q ss_pred cCCCcHHHHHHHHHHhccCccccCccc
Q 014801 384 SSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
...+ ....+++.+....+.+...+
T Consensus 386 ~~~~---~~~~~~~~l~~~~e~~~s~l 409 (702)
T 2p6r_A 386 GKRD---REIAVKRYIFGEPERITSKL 409 (702)
T ss_dssp CGGG---HHHHHHTTTSSCCCCCCCCC
T ss_pred cCcc---HHHHHHHHhcCCCCCceeec
Confidence 8544 22223344444555554444
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-45 Score=373.60 Aligned_cols=353 Identities=18% Similarity=0.178 Sum_probs=269.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 37 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 37 ~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
..|...++++.+...+...+...|+++|.++++.+..+++++++||||+|||+++.++++..+..+. +++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHH
Confidence 3566666666666666666677899999999999999999999999999999999999998875443 8999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 117 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 117 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+.|+++.+.++.. .+..++|+.... ...+|+|+||+.|.+++......+.++++|||||||.+.+
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d- 304 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD- 304 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS-
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc-
Confidence 99999999998752 677788876632 3469999999999999888777788999999999999876
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccH--HHHHHHhcCCCeEEEEcCCcccccccceEEEEEec------------
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEI--RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS------------ 262 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 262 (418)
.++...+..++..++...+++++|||+++.. ..++......+..+.......... ...++...
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl---~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPL---QHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCE---EEEEEETTSSCCEEEEETTT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccc---eEEEeecCCcceeeeecccc
Confidence 4677778888888999999999999998753 355566565555544333221111 11110000
Q ss_pred -------------------------------------------hhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHH
Q 014801 263 -------------------------------------------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 299 (418)
Q Consensus 263 -------------------------------------------~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L 299 (418)
.......+...+......++||||++++.|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0112223333444456679999999999999999988
Q ss_pred HhCCCC---------------------------------------eEEecCCCCHHHHHHHHHhhhcCCccEEEEecccc
Q 014801 300 VECNFP---------------------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 340 (418)
Q Consensus 300 ~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~ 340 (418)
...++. +..+||++++.+|..+++.|.+|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 653221 68899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecC--------CCChhhhhhhcccccCCC--CceeEEEEecCCCcHHHHHHHHHHhccCccccCccc
Q 014801 341 RGIDIERVNIVINYDM--------PDSADTYLHRVGRAGRFG--TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 410 (418)
Q Consensus 341 ~G~d~~~~~~vi~~~~--------~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
+|+|+|++++||+++. |.|+.+|.||+||+||.| ..|.+++++.+..+...+.. .+......+.+.+
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~---l~~~~~~~L~S~f 618 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG---MVKGQADRLDSAF 618 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHH---HHHCCCCCCCCCC
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHH---HhcCCCccccccc
Confidence 9999999999996554 337778999999999999 67999999987756554443 4455555666555
Q ss_pred cc
Q 014801 411 DT 412 (418)
Q Consensus 411 ~~ 412 (418)
..
T Consensus 619 ~~ 620 (1108)
T 3l9o_A 619 HL 620 (1108)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.4e-46 Score=372.13 Aligned_cols=333 Identities=20% Similarity=0.259 Sum_probs=215.0
Q ss_pred HHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC--CCeeEEEecCcHHHHHHHHHHHHH
Q 014801 50 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 50 ~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
..+...|+.+|+++|.++++.++.++++++++|||+|||++++++++..+.... .+.++|+++|+++|+.||.+.+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999987664332 124899999999999999999999
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC-CCCCccEEEEechhhhccCCCCHHHHHHH
Q 014801 128 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEI 206 (418)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~ 206 (418)
++... ++++..++|+.........+..+ .+|+|+||+.+.+.+....+ .+.++++||+||||++.+...+...+...
T Consensus 84 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 84 YFERH-GYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HTTTT-TCCEEEECSSSCSSSCHHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HhccC-CceEEEEeCCccccccHHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 98655 88999999987654444444333 69999999999999888766 68889999999999998754444444333
Q ss_pred Hhh-----CCCCccEEEEEecCCc-------c-HHHHH---------------------HHhcCCCeEEEEcCCccccc-
Q 014801 207 FKM-----TPHDKQVMMFSATLSK-------E-IRPVC---------------------KKFMQDPMEIYVDDEAKLTL- 251 (418)
Q Consensus 207 ~~~-----~~~~~~~i~lSAT~~~-------~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~~- 251 (418)
+.. ....+++++||||+.. . ...+. ..+...|.............
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 332 2456899999999972 1 11111 11112222111100000000
Q ss_pred --------------------c-----------------------------------------------------------
Q 014801 252 --------------------H----------------------------------------------------------- 252 (418)
Q Consensus 252 --------------------~----------------------------------------------------------- 252 (418)
.
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 0
Q ss_pred ------------------------------cceEEEEE---------------e-chhhHHHHHHHHHhhc----CCCeE
Q 014801 253 ------------------------------GLVQHYIK---------------L-SELEKNRKLNDLLDAL----DFNQV 282 (418)
Q Consensus 253 ------------------------------~~~~~~~~---------------~-~~~~~~~~l~~~~~~~----~~~~~ 282 (418)
...+.+.. . ....+...+..++... +++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000 0 0223445555566554 56899
Q ss_pred EEEeCCchhHHHHHHHHHhCC----CCeEEe--------cCCCCHHHHHHHHHhhhc-CCccEEEEecccccCCCCCCCC
Q 014801 283 VIFVKSVSRAAELNKLLVECN----FPSICI--------HSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVN 349 (418)
Q Consensus 283 lif~~~~~~~~~~~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~ 349 (418)
||||++++.++.+++.|.+.+ +.+..+ |++++..+|..+++.|++ |+++|||||+++++|+|+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999987 788887 559999999999999998 9999999999999999999999
Q ss_pred EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 350 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
+||+|+.|+|+..|.||+|| ||. ++|.++.++...
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 99999999999999999999 997 788998888743
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.7e-44 Score=352.20 Aligned_cols=329 Identities=21% Similarity=0.252 Sum_probs=196.0
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC--CeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~--~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
+..+|+|+|.++++.++.++++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3458999999999999999999999999999999999999887765431 4489999999999999999999998766
Q ss_pred CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC-CCCCccEEEEechhhhccCCCCHHHHHHHHhh---
Q 014801 134 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM--- 209 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~--- 209 (418)
++++..++|+.........+..+ ++|+|+||+.+...+....+ .+.++++||+||||++.+...+...+..+...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 88999999987655544444333 59999999999999988777 78999999999999998743333333333322
Q ss_pred -CCCCccEEEEEecCCcc----HHH-------HHHH------------------hcCCCeEEEEcCCc--cccccc----
Q 014801 210 -TPHDKQVMMFSATLSKE----IRP-------VCKK------------------FMQDPMEIYVDDEA--KLTLHG---- 253 (418)
Q Consensus 210 -~~~~~~~i~lSAT~~~~----~~~-------~~~~------------------~~~~~~~~~~~~~~--~~~~~~---- 253 (418)
....++++++|||++.. ... +... +...+......... ......
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 13557899999999532 111 1111 11111111111000 000000
Q ss_pred -------c----e--EEEEE-----e------------------------------------------------------
Q 014801 254 -------L----V--QHYIK-----L------------------------------------------------------ 261 (418)
Q Consensus 254 -------~----~--~~~~~-----~------------------------------------------------------ 261 (418)
. . ..+.. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0 00000 0
Q ss_pred -----------------------------------------------chhhHHHHHHHHHhh----cCCCeEEEEeCCch
Q 014801 262 -----------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVS 290 (418)
Q Consensus 262 -----------------------------------------------~~~~~~~~l~~~~~~----~~~~~~lif~~~~~ 290 (418)
....+...+..++.. ..+.++||||++++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 001233334444433 46689999999999
Q ss_pred hHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCccEEEEecccccCCCCCCCCEEEEecCC
Q 014801 291 RAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMP 357 (418)
Q Consensus 291 ~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~ 357 (418)
.++.+++.|.+. |.....+|++++..+|..+++.|++ |+++|||||+++++|+|+|++++||+|+.|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4455566788999999999999999 999999999999999999999999999999
Q ss_pred CChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 358 DSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 358 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
+|+..|.||+|| ||. ++|.++.++...+.
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999 998 78999999986544
No 25
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-43 Score=341.96 Aligned_cols=324 Identities=19% Similarity=0.292 Sum_probs=244.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
+|+|+|.++++.++.+ ++++++|||+|||+++++++...+. ..+.++||++|+++|+.||.++++++... +..++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheE
Confidence 7999999999999999 9999999999999999988887764 12237999999999999999999998632 255888
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.++|+............ .+|+|+||+.+...+....+.+.++++||+||||.+.+...+ ..+...........++++
T Consensus 85 ~~~g~~~~~~~~~~~~~--~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~-~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWAR--AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAY-VFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EECSCSCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHH-HHHHHHHHHHCSSCCEEE
T ss_pred EeeCCcchhhhhhhccC--CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcH-HHHHHHHHhcCCCCeEEE
Confidence 99998776654444333 599999999999988887778899999999999999863333 334444444456788999
Q ss_pred EEecCCccHHH---HHHHhcCCCeEEEEcCCc--ccccccceEEEEEe--------------------------------
Q 014801 219 FSATLSKEIRP---VCKKFMQDPMEIYVDDEA--KLTLHGLVQHYIKL-------------------------------- 261 (418)
Q Consensus 219 lSAT~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------------- 261 (418)
+|||+...... ++..+............. ..........+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999854332 222222111111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014801 262 -------------------------------------------------------------------------------- 261 (418)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (418)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHhh----cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecC--------
Q 014801 262 ------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS-------- 311 (418)
Q Consensus 262 ------------------~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~-------- 311 (418)
....+...+.+++.. ..+.++||||++.+.++.+++.|.+.++.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 112233444555554 46789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHH
Q 014801 312 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 390 (418)
Q Consensus 312 ~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 390 (418)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|+ |.++.++...+..+
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999988665443
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-43 Score=357.99 Aligned_cols=332 Identities=20% Similarity=0.231 Sum_probs=257.9
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
+| +|+++|.++++.+..++++++++|||+|||+++.++++..+..+ .+++|++|+++|++|+++.+.+...
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~----- 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG----- 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS-----
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC-----
Confidence 44 59999999999999999999999999999999998888877543 3899999999999999999998763
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCcc
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 215 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 215 (418)
++..++|+.... ...+|+|+||+.+.+++.+....+.++++|||||+|.+.+ ......+..++..++...+
T Consensus 155 ~vglltGd~~~~--------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp CEEEECSSCEEC--------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHSCTTCE
T ss_pred CEEEEeCCCccC--------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchhHHHHHHHHhcCCCCe
Confidence 677788876643 2359999999999998888777889999999999999987 5677788888888888999
Q ss_pred EEEEEecCCccHH--HHHHHhcCCCeEEEEcCCcccccccceEEEEEe---------ch---------------------
Q 014801 216 VMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---------SE--------------------- 263 (418)
Q Consensus 216 ~i~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------------- 263 (418)
++++|||+++... .++......+..+........ .+...+... ..
T Consensus 226 il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 226 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS---CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 9999999987432 344444444544443322111 111111110 00
Q ss_pred -------------------------hhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCC-------------
Q 014801 264 -------------------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP------------- 305 (418)
Q Consensus 264 -------------------------~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~------------- 305 (418)
......+...+......++||||+++..++.++..|...++.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 111122333344445569999999999999999998775442
Q ss_pred --------------------------eEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec
Q 014801 306 --------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD 355 (418)
Q Consensus 306 --------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~ 355 (418)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||. |+
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 678999999999999999999999999999999999999999999998 88
Q ss_pred C----CCChhhhhhhcccccCCCC--ceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 356 M----PDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 356 ~----~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
. |.|+.+|.||+||+||.|+ .|.+++++.+..+...+..+ +......+.+.+.
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l---~~~~~~~l~s~f~ 521 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM---VKGQADRLDSAFH 521 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH---HSCCCCCCCCCCC
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH---HhCCCcccccccC
Confidence 8 8899999999999999997 49999999866555444443 4455555555444
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.4e-44 Score=351.47 Aligned_cols=326 Identities=21% Similarity=0.251 Sum_probs=221.7
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC--CeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~--~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
.+|+|+|.++++.++.++++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++... ++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-Cc
Confidence 37999999999999999999999999999999999999888765431 4489999999999999999999998776 89
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC-CCCCccEEEEechhhhccCCCCHHHHHHHHhhC----
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMT---- 210 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~---- 210 (418)
++..++|+.........+..+ ++|+|+||+.+...+..... .+.++++||+||||++.+...+...+..+....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred EEEEEcCCCcchhhHHHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999998665554444333 59999999999999888776 688899999999999987444333333433321
Q ss_pred -CCCccEEEEEecCCccH--------HHHH--HHhcCCCeEEEEcCCcc----cccccceEEEEEec-------------
Q 014801 211 -PHDKQVMMFSATLSKEI--------RPVC--KKFMQDPMEIYVDDEAK----LTLHGLVQHYIKLS------------- 262 (418)
Q Consensus 211 -~~~~~~i~lSAT~~~~~--------~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------------- 262 (418)
...++++++|||+.... ..+. ...+... .+....... .........+....
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 24578999999996421 1110 1111101 111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014801 263 -------------------------------------------------------------------------------- 262 (418)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (418)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred -------------------------------------------------hhhHHHHHHHHHhh----cCCCeEEEEeCCc
Q 014801 263 -------------------------------------------------ELEKNRKLNDLLDA----LDFNQVVIFVKSV 289 (418)
Q Consensus 263 -------------------------------------------------~~~~~~~l~~~~~~----~~~~~~lif~~~~ 289 (418)
...+...+.+++.. .++.++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 01233334444433 3568999999999
Q ss_pred hhHHHHHHHHHhCC------------CCeEEecCCCCHHHHHHHHHhhhc-CCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 290 SRAAELNKLLVECN------------FPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 290 ~~~~~~~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
+.++.++..|.+.+ .....+||+++..+|..+++.|++ |+++|||||+++++|+|+|++++||+|+.
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998763 344455679999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
|+|+..|.||+|| ||. +.|.++.++...+.
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 9999999999999 998 89999999985443
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-43 Score=357.99 Aligned_cols=330 Identities=21% Similarity=0.243 Sum_probs=205.0
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC--CeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~--~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
.|+..|+++|.++++.++.++++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++...
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 36789999999999999999999999999999999999999888765431 4489999999999999999999998766
Q ss_pred CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC-CCCCccEEEEechhhhccCCCCHHHHHHHHhh--
Q 014801 133 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM-- 209 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~-- 209 (418)
++++..++|+.........+..+ ++|+|+||+.+.+.+....+ .+.++++||+||||++.+...+...+..+...
T Consensus 324 -~~~v~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 324 -GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp -TCCEEEECCC-----CHHHHHHT-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred -CceEEEEeCCcchhhhHHHhhCC-CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 88999999988666554444443 69999999999998887766 68889999999999988744433333333332
Q ss_pred --CCCCccEEEEEecCCcc-----------HHHHH------------------HHhcCCCeEEEEcCCcc--cccc----
Q 014801 210 --TPHDKQVMMFSATLSKE-----------IRPVC------------------KKFMQDPMEIYVDDEAK--LTLH---- 252 (418)
Q Consensus 210 --~~~~~~~i~lSAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~---- 252 (418)
....++++++|||+... +..+. ..+...+.......... ....
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 24568899999999531 11111 11112222111110000 0000
Q ss_pred -----------c---------ceEEEEEe---------------------------------------------------
Q 014801 253 -----------G---------LVQHYIKL--------------------------------------------------- 261 (418)
Q Consensus 253 -----------~---------~~~~~~~~--------------------------------------------------- 261 (418)
. ........
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 00000000
Q ss_pred ------------------------------------------------chhhHHHHHHHHHhh----cCCCeEEEEeCCc
Q 014801 262 ------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSV 289 (418)
Q Consensus 262 ------------------------------------------------~~~~~~~~l~~~~~~----~~~~~~lif~~~~ 289 (418)
....+...+..++.. .++.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 001233334444433 4668999999999
Q ss_pred hhHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 290 SRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 290 ~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
..++.+++.|.+. |.....+|++++..+|..+++.|++ |+++|||||+++++|+|+|++++||+|+.
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 4556667889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
|+|+..|+||+|| ||. ++|.++.++...+.
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999 998 89999999985543
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-42 Score=354.86 Aligned_cols=330 Identities=21% Similarity=0.248 Sum_probs=205.3
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCC--CeeEEEecCcHHHHHHHHHHHHHHhccC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYL 132 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~--~~~~lii~P~~~l~~q~~~~~~~~~~~~ 132 (418)
.++..|+++|.++++.++.|+++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35779999999999999999999999999999999999999888776431 3479999999999999999999998766
Q ss_pred CCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC-CCCCccEEEEechhhhccCCCCHHHHHHHHhh--
Q 014801 133 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM-- 209 (418)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~-- 209 (418)
++++..++|+.........+..+ ++|+|+||+.+...+....+ .+.++++||+||||++.+...+...+..+...
T Consensus 324 -~~~v~~~~G~~~~~~~~~~~~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 324 -GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp -TCCEEEECCC-----CCHHHHHH-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred -CceEEEEECCcchhhHHHHhccC-CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 89999999987655433333332 59999999999998887766 67889999999999988744444444344332
Q ss_pred --CCCCccEEEEEecCCcc-----------HHHHH------------------HHhcCCCeEEEEcCCcccc--cc----
Q 014801 210 --TPHDKQVMMFSATLSKE-----------IRPVC------------------KKFMQDPMEIYVDDEAKLT--LH---- 252 (418)
Q Consensus 210 --~~~~~~~i~lSAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~---- 252 (418)
....++++++|||+... +..+. ..+...+............ ..
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 24567899999999531 11111 1122222222111110000 00
Q ss_pred -----------c---------ceEEEEEe---------------------------------------------------
Q 014801 253 -----------G---------LVQHYIKL--------------------------------------------------- 261 (418)
Q Consensus 253 -----------~---------~~~~~~~~--------------------------------------------------- 261 (418)
. ........
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 00000000
Q ss_pred ------------------------------------------------chhhHHHHHHHHHhh----cCCCeEEEEeCCc
Q 014801 262 ------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSV 289 (418)
Q Consensus 262 ------------------------------------------------~~~~~~~~l~~~~~~----~~~~~~lif~~~~ 289 (418)
....+...+..++.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 001123334444443 3568999999999
Q ss_pred hhHHHHHHHHHhC------------CCCeEEecCCCCHHHHHHHHHhhhc-CCccEEEEecccccCCCCCCCCEEEEecC
Q 014801 290 SRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDM 356 (418)
Q Consensus 290 ~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~l~~G~d~~~~~~vi~~~~ 356 (418)
+.++.+++.|.+. |.....+||+++..+|..+++.|++ |+++|||||+++++|+|+|++++||+|+.
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999976 4555667889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 357 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
|+|+..|+||+|| ||. +.|.++.++...+.
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999 998 78899999875443
No 30
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.1e-43 Score=373.75 Aligned_cols=342 Identities=23% Similarity=0.316 Sum_probs=250.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCC--------CCCeeEEEecCc
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPN--------PGQVTALVLCHT 114 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~--------~~~~~~lii~P~ 114 (418)
|+++....+. |++.|+++|.++++.++. +++++++||||||||+++.+++++.+.+. ..+.++||++|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 4444444332 789999999999998775 78999999999999999999999876431 234589999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC--CCCCccEEEEechhh
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDK 192 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~ 192 (418)
++|+.|..+.|++..... ++++..++|+....... . ..++|+|+|||++..++++... .++++++||+||+|.
T Consensus 144 kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh
Confidence 999999999999887776 89999999987654321 1 2359999999999888776432 367899999999998
Q ss_pred hccCCCCHHHHHHHH-------hhCCCCccEEEEEecCCccHHHHHHHhcCCCe--EEEEcCCcccccccceEEEEEech
Q 014801 193 MLESLDMRRDVQEIF-------KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTLHGLVQHYIKLSE 263 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 263 (418)
+.+ ..+..++.+. ...+...|+|++|||+++ ..++++.+..++. ...++.. ..+..+.+.++....
T Consensus 219 l~d--~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~ 293 (1724)
T 4f92_B 219 LHD--DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITE 293 (1724)
T ss_dssp GGS--TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECC
T ss_pred cCC--ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCC
Confidence 865 3444443332 345677899999999986 3555544433321 1222222 122233444433332
Q ss_pred h---hHH----HHHHH-HHhhcCCCeEEEEeCCchhHHHHHHHHHhC---------------------------------
Q 014801 264 L---EKN----RKLND-LLDALDFNQVVIFVKSVSRAAELNKLLVEC--------------------------------- 302 (418)
Q Consensus 264 ~---~~~----~~l~~-~~~~~~~~~~lif~~~~~~~~~~~~~L~~~--------------------------------- 302 (418)
. ... ..+.. +.....++++||||++++.|+.+++.|.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 373 (1724)
T 4f92_B 294 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLEL 373 (1724)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHH
Confidence 1 111 12222 223345679999999999999888877531
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----ec------CCCChhhhhhhcc
Q 014801 303 ----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD------MPDSADTYLHRVG 368 (418)
Q Consensus 303 ----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~G 368 (418)
...+..+|++|++++|..+++.|++|.++|||||++++.|+|+|..++||. |+ .+.+..+|.||+|
T Consensus 374 ~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~G 453 (1724)
T 4f92_B 374 KDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLG 453 (1724)
T ss_dssp HHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhh
Confidence 234778999999999999999999999999999999999999999998884 43 3458999999999
Q ss_pred cccCCCC--ceeEEEEecCCCcHHHHHHHHH
Q 014801 369 RAGRFGT--KGLAITFVSSASDSDILNQVQA 397 (418)
Q Consensus 369 R~~R~~~--~g~~~~~~~~~~~~~~~~~~~~ 397 (418)
||||.|. .|.+++++.+.+...+...+..
T Consensus 454 RAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 454 RAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp TBSCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred hccCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 9999874 6999999987766665555443
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.2e-42 Score=351.34 Aligned_cols=320 Identities=19% Similarity=0.309 Sum_probs=249.7
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+ +|+++|.++++.++.|++++++||||+|||++++++++..+..+ .++||++|+++|+.|+.+.++++. . .+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~---~~~Lil~PtreLa~Q~~~~l~~l~-~-~~ 148 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLA-D-EK 148 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHTTS-C-TT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CeEEEEechHHHHHHHHHHHHHhh-C-CC
Confidence 466 79999999999999999999999999999998888877777433 389999999999999999999976 3 38
Q ss_pred ceEEEEEcCcch---HHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC----------CCCHH
Q 014801 135 IKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRR 201 (418)
Q Consensus 135 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~----------~~~~~ 201 (418)
+++..++|+.+. ......+..+.++|+|+||+.+..++.. +.+.++++||+||||++... .++..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 999999999887 4555566666689999999999887664 56778999999999987641 34555
Q ss_pred H-HHHHHhhCC-----------CCccEEEEEec-CCccHH-HHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHH
Q 014801 202 D-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 267 (418)
Q Consensus 202 ~-~~~~~~~~~-----------~~~~~i~lSAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (418)
. +..+...++ ...|++++||| .+.... .+......- .+. ........+.+.+..+ .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i----~v~-~~~~~~~~i~~~~~~~---~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF----TVG-RLVSVARNITHVRISS---RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC----CCC-BCCCCCCCEEEEEESC---CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE----Eec-cCCCCcCCceeEEEec---CHH
Confidence 5 666666555 67899999999 454433 233333321 111 1112233444555444 344
Q ss_pred HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeE-EecCCCCHHHHHHHHHhhhcCCccEEEE----ecccccC
Q 014801 268 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRG 342 (418)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~l~~G 342 (418)
..+..++... ++++||||++++.++.++..|...++.+. .+|| +|.. ++.|++|+++|||| |+++++|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 4555666553 48999999999999999999999999998 8998 2455 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEecCCC---------------------------------------------------------------
Q 014801 343 IDIER-VNIVINYDMPD--------------------------------------------------------------- 358 (418)
Q Consensus 343 ~d~~~-~~~vi~~~~~~--------------------------------------------------------------- 358 (418)
+|+|+ +++||+++.|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------ChhhhhhhcccccCCCCc----eeEEEEecCCCcHHHHHHHHHHhc
Q 014801 359 ---------SADTYLHRVGRAGRFGTK----GLAITFVSSASDSDILNQVQARFE 400 (418)
Q Consensus 359 ---------s~~~~~Q~~GR~~R~~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 400 (418)
+..+|+||+||+||.|.. |.+++++ ++...++.+++.++
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 778999999999997643 4555555 56677777777764
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-41 Score=360.32 Aligned_cols=336 Identities=17% Similarity=0.196 Sum_probs=248.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 43 LLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 43 ~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
.+.+...+.+...+|..++|+|.++++.++. +++++++||||||||+++.+++++.+.+..++ +++|++|+++|+.|.
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~-kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQV 988 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTC-CEEEECSCHHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCC-EEEEEcChHHHHHHH
Confidence 3556667777777899999999999999976 67899999999999999999999988655443 799999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCC--CCCCccEEEEechhhhccCCCC
Q 014801 122 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDM 199 (418)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~~~~~~~~ 199 (418)
.+.+++......++++..++|+...+.. .... ++|+|+||+++..++++... .+++++++|+||+|.+.+ ..
T Consensus 989 ~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~~--~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d--~r 1062 (1724)
T 4f92_B 989 YMDWYEKFQDRLNKKVVLLTGETSTDLK--LLGK--GNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG--EN 1062 (1724)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCHHHHHH--HHHH--CSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS--TT
T ss_pred HHHHHHHhchhcCCEEEEEECCCCcchh--hcCC--CCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC--CC
Confidence 9999765443338899999997654322 2222 59999999999988876432 367899999999998875 33
Q ss_pred HHHHHHH-------HhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEE-EcCCcccccccceEEEEEechhhH-----
Q 014801 200 RRDVQEI-------FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY-VDDEAKLTLHGLVQHYIKLSELEK----- 266 (418)
Q Consensus 200 ~~~~~~~-------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----- 266 (418)
+..+..+ ....+...|++++|||+++. .++++++........ +.... ....+...+........
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNV--RPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSHHHHHH
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCchhhhh
Confidence 4443332 34456788999999999863 555555443332222 22221 22223333322221111
Q ss_pred ---HHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhC----------------------------------CCCeEEe
Q 014801 267 ---NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----------------------------------NFPSICI 309 (418)
Q Consensus 267 ---~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~----------------------------------~~~~~~~ 309 (418)
......+....+++++||||+++..|+.++..|... ...+..+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 112222333456789999999999999888766421 2357889
Q ss_pred cCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----e------cCCCChhhhhhhcccccCCCC--ce
Q 014801 310 HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----Y------DMPDSADTYLHRVGRAGRFGT--KG 377 (418)
Q Consensus 310 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~~~--~g 377 (418)
|+++++.+|..+++.|++|.++|||||++++.|+|+|...+||. | ..+.+..+|.||+|||||.|. .|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999998888883 2 235689999999999999986 68
Q ss_pred eEEEEecCCCc
Q 014801 378 LAITFVSSASD 388 (418)
Q Consensus 378 ~~~~~~~~~~~ 388 (418)
.+++++...+.
T Consensus 1300 ~avll~~~~~~ 1310 (1724)
T 4f92_B 1300 RCVIMCQGSKK 1310 (1724)
T ss_dssp EEEEEEEGGGH
T ss_pred EEEEEecchHH
Confidence 89998885443
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.4e-43 Score=350.52 Aligned_cols=314 Identities=21% Similarity=0.278 Sum_probs=216.8
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC---CCeeEEEecCcHHHHHHH-HHHHHHHhccCC
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQI-CHEFERFSTYLP 133 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~---~~~~~lii~P~~~l~~q~-~~~~~~~~~~~~ 133 (418)
.+|+++|.++++.++.++++++++|||+|||++++++++..+.... .+.++||++|+++|+.|| .+.++++...
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 4899999999999999999999999999999999999987654331 113799999999999999 9999998754
Q ss_pred CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHH------hcCCCCCCCccEEEEechhhhccCCCCHHHHHHHH
Q 014801 134 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA------RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 207 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~------~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~ 207 (418)
++++..++|+.........+.. ..+|+|+||+.+.+.+ ....+.+.++++|||||||++.....+...+..+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHH-SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhc-CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 4889999998765544343333 3699999999999877 44456778899999999998865434444333332
Q ss_pred hhC-------------CCCccEEEEEecCCcc-----------HHHHHHHhc------------------CCCeEEEEcC
Q 014801 208 KMT-------------PHDKQVMMFSATLSKE-----------IRPVCKKFM------------------QDPMEIYVDD 245 (418)
Q Consensus 208 ~~~-------------~~~~~~i~lSAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~ 245 (418)
... ...++++++|||+... +..+...+. ..+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 211 1557899999999863 111212211 1111111100
Q ss_pred Ccccc----------------------cccce------------------------------------------------
Q 014801 246 EAKLT----------------------LHGLV------------------------------------------------ 255 (418)
Q Consensus 246 ~~~~~----------------------~~~~~------------------------------------------------ 255 (418)
..... .....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000
Q ss_pred -----------------------EEEEEec--------------------------hhhH----HHHHHHHHhhcC-CCe
Q 014801 256 -----------------------QHYIKLS--------------------------ELEK----NRKLNDLLDALD-FNQ 281 (418)
Q Consensus 256 -----------------------~~~~~~~--------------------------~~~~----~~~l~~~~~~~~-~~~ 281 (418)
....... ...+ ...+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000000 0000 011122222223 789
Q ss_pred EEEEeCCchhHHHHHHHHHhC------CCCeEEecCC--------CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 282 VVIFVKSVSRAAELNKLLVEC------NFPSICIHSG--------MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 282 ~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
+||||++++.++.+++.|.+. |+.+..+||+ |+..+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhhcccccCCC
Q 014801 348 VNIVINYDMPDSADTYLHRVGRAGRFG 374 (418)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 374 (418)
+++||+|+.|+|+..|.||+|||||.|
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999987654
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.9e-41 Score=342.26 Aligned_cols=320 Identities=19% Similarity=0.230 Sum_probs=241.4
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
+|+++|.++++.+..++++++++|||+|||+++++++......+ .+++|++|+++|+.|+++.+.++. +++++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~---~~~~v~ 112 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETF---DDVNIG 112 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC-----CCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHc---CCCeEE
Confidence 68999999999999999999999999999999888887766443 389999999999999999888754 367888
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.++|+.... ...+|+|+||+.+.+.+......+.++++|||||+|.+.+ .++...+..+...++...++++
T Consensus 113 ~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~~e~ii~~l~~~v~iIl 183 (997)
T 4a4z_A 113 LITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVVWEEVIIMLPQHVKFIL 183 (997)
T ss_dssp EECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCCHHHHHHHSCTTCEEEE
T ss_pred EEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHHHHHHHHhcccCCCEEE
Confidence 899886533 3369999999999998887777788999999999998876 4667778888888888999999
Q ss_pred EEecCCccHHHHHHHh---cCCCeEEEEcCCcccccccce------E---------------------------------
Q 014801 219 FSATLSKEIRPVCKKF---MQDPMEIYVDDEAKLTLHGLV------Q--------------------------------- 256 (418)
Q Consensus 219 lSAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~--------------------------------- 256 (418)
+|||+++.. .+...+ ......+.............. .
T Consensus 184 LSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 184 LSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp EECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred EcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 999998643 233222 212222221111100000000 0
Q ss_pred ---------------------------------------------------EEEEechhhHHHHHHHHHhhcCCCeEEEE
Q 014801 257 ---------------------------------------------------HYIKLSELEKNRKLNDLLDALDFNQVVIF 285 (418)
Q Consensus 257 ---------------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~lif 285 (418)
.............+...+......++|||
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF 342 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEE
Confidence 00000111224455566666677899999
Q ss_pred eCCchhHHHHHHHHHhCCC---------------------------------------CeEEecCCCCHHHHHHHHHhhh
Q 014801 286 VKSVSRAAELNKLLVECNF---------------------------------------PSICIHSGMSQEERLTRYKGFK 326 (418)
Q Consensus 286 ~~~~~~~~~~~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~ 326 (418)
|++++.|+.++..|...++ .+..+|+++++.+|..+++.|.
T Consensus 343 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~ 422 (997)
T 4a4z_A 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS 422 (997)
T ss_dssp CSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHH
Confidence 9999999999999977655 4789999999999999999999
Q ss_pred cCCccEEEEecccccCCCCCCCCEEEEecCCC---------ChhhhhhhcccccCCC--CceeEEEEec-CCCcHHHHHH
Q 014801 327 EGNKRILVATDLVGRGIDIERVNIVINYDMPD---------SADTYLHRVGRAGRFG--TKGLAITFVS-SASDSDILNQ 394 (418)
Q Consensus 327 ~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~~--~~g~~~~~~~-~~~~~~~~~~ 394 (418)
+|.++|||||+++++|+|+|+ ..||+++.+. |..+|.||+||+||.| ..|.+++++. ...+...++.
T Consensus 423 ~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 423 KGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp TTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 999999999999999999999 6566555544 9999999999999988 5677877773 2333344433
Q ss_pred H
Q 014801 395 V 395 (418)
Q Consensus 395 ~ 395 (418)
+
T Consensus 502 ~ 502 (997)
T 4a4z_A 502 V 502 (997)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.6e-39 Score=336.56 Aligned_cols=323 Identities=19% Similarity=0.176 Sum_probs=246.0
Q ss_pred CCCCHHHHHHHHHC-CCCCCcHHHHHhHHhhhc----CC--cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 42 FLLKPELLRAIVDS-GFEHPSEVQHECIPQAIL----GM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 42 ~~l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~----~~--~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
+..++...+.+... ++ +++|+|.++++.++. ++ ++++++|||+|||.+++.+++.....+. +++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEech
Confidence 45666666666544 55 679999999999887 55 8999999999999999888877665433 89999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechh
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 191 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h 191 (418)
++|+.|+++.+.+..... ++++..+++........ ..+..+..+|+|+||+.+. ..+.+.++++||+||+|
T Consensus 662 ~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGG
T ss_pred HHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechH
Confidence 999999999999877655 68888888766554443 3345566899999998663 34668899999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHH
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 271 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (418)
++.. .....+.......++++||||+.+...........+... ..........+.......... ....
T Consensus 736 ~~g~------~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~---i~~~~~~r~~i~~~~~~~~~~---~i~~ 803 (1151)
T 2eyq_A 736 RFGV------RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI---IATPPARRLAVKTFVREYDSM---VVRE 803 (1151)
T ss_dssp GSCH------HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE---CCCCCCBCBCEEEEEEECCHH---HHHH
T ss_pred hcCh------HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE---EecCCCCccccEEEEecCCHH---HHHH
Confidence 8643 223333344456789999999987655554443333221 111111111222222222222 2222
Q ss_pred HHHhh-cCCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC
Q 014801 272 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 348 (418)
Q Consensus 272 ~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~ 348 (418)
.++.. ..+++++|||++++.++.+++.|.+. +..+..+||+|+..+|..+++.|.+|+++|||||+++++|+|+|++
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 33332 25689999999999999999999887 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEecC-CCChhhhhhhcccccCCCCceeEEEEecCC
Q 014801 349 NIVINYDM-PDSADTYLHRVGRAGRFGTKGLAITFVSSA 386 (418)
Q Consensus 349 ~~vi~~~~-~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 386 (418)
++||+++. +++..+|.|++||+||.|+.|.|++++...
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999887 579999999999999999999999998754
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-41 Score=334.77 Aligned_cols=319 Identities=22% Similarity=0.223 Sum_probs=236.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhHHhhhcC------CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 46 PELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 46 ~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~------~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
+.+.+.+...+| +|+++|+++++.+..+ .++++++|||||||.+++++++..+..+ .++++++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 455556677788 9999999999998874 5899999999999999999999877543 38999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC
Q 014801 120 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 196 (418)
Q Consensus 120 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~ 196 (418)
|+++.++++.... ++++..++|+........ .+.++..+|+|+||+.+.. ...+.++++||+||+|.+...
T Consensus 432 Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 432 QHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH
Confidence 9999999998766 899999999987665433 3455668999999987754 356789999999999986431
Q ss_pred CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhh
Q 014801 197 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 276 (418)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (418)
. ...+......+++++||||+.+..... .+..+......... ......+...+ .........+..+...
T Consensus 506 --q----r~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~-p~~r~~i~~~~--~~~~~~~~l~~~i~~~ 574 (780)
T 1gm5_A 506 --Q----REALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEM-PPGRKEVQTML--VPMDRVNEVYEFVRQE 574 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCC-CSSCCCCEECC--CCSSTHHHHHHHHHHH
T ss_pred --H----HHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeecc-CCCCcceEEEE--eccchHHHHHHHHHHH
Confidence 1 111222234688999999987654332 22332211111111 11111111111 1222222333333333
Q ss_pred c-CCCeEEEEeCCch--------hHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCC
Q 014801 277 L-DFNQVVIFVKSVS--------RAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 344 (418)
Q Consensus 277 ~-~~~~~lif~~~~~--------~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d 344 (418)
. .+++++|||+..+ .++.+++.|.+ .+..+..+||+|+..+|..+++.|++|+++|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 3 4678999999664 46778888887 3678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCC-ChhhhhhhcccccCCCCceeEEEEecC
Q 014801 345 IERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
+|++++||+++.+. +...+.|++||+||.|++|.|++++.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999985 788999999999999999999999883
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.8e-41 Score=349.11 Aligned_cols=326 Identities=17% Similarity=0.280 Sum_probs=243.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 48 LLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 48 ~~~~l~~-~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
+.+.+.. .|+. | ++|.++++.++.|+++++++|||+|||+ +.++++..+... +++++|++|+++|+.|+.+.++
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHH
Confidence 3344444 5888 9 9999999999999999999999999998 666666655432 3489999999999999999999
Q ss_pred HHhccCCCc----eEEEEEcCcchHHHH---HHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCC
Q 014801 127 RFSTYLPDI----KVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM 199 (418)
Q Consensus 127 ~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~ 199 (418)
+++... ++ ++..++|+.....+. ..+.+ .+|+|+||+.|..++.+ +.++++||+||||.+.+ +
T Consensus 121 ~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~ 190 (1054)
T 1gku_B 121 KYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---A 190 (1054)
T ss_dssp HHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---S
T ss_pred HHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---c
Confidence 998776 67 899999998876642 22333 69999999999987664 66899999999999876 4
Q ss_pred HHHHHHHHhhCC-----------CCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHH
Q 014801 200 RRDVQEIFKMTP-----------HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 268 (418)
Q Consensus 200 ~~~~~~~~~~~~-----------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (418)
...+..+...++ ...+.+++|||++.. ......+..++..+.+.. .......+.+.+. ...+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~-~~~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS-SRITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC-CEECCCCEEEEEE---SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC-cccCcCCceEEEe---chhHHH
Confidence 566666665552 457889999999876 422222222111111111 1112223333333 233445
Q ss_pred HHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEE----ecccccCCC
Q 014801 269 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGID 344 (418)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~l~~G~d 344 (418)
.+..++... ++++||||++++.++.+++.|.+. +.+..+||++. .+++.|++|+++|||| |+++++|+|
T Consensus 266 ~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGID 338 (1054)
T 1gku_B 266 TLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLD 338 (1054)
T ss_dssp TTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSC
T ss_pred HHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccc
Confidence 555666655 478999999999999999999988 99999999873 6788899999999999 899999999
Q ss_pred CCCC-CEEEEecCC------------------------------------------------------------------
Q 014801 345 IERV-NIVINYDMP------------------------------------------------------------------ 357 (418)
Q Consensus 345 ~~~~-~~vi~~~~~------------------------------------------------------------------ 357 (418)
+|++ ++||+++.|
T Consensus 339 ip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 418 (1054)
T 1gku_B 339 LPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418 (1054)
T ss_dssp CTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEET
T ss_pred cCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEee
Confidence 9995 999999999
Q ss_pred -----CChhhhhhhcccccCCCCce--eEEEEecCCCcHHHHHHHHHHhcc
Q 014801 358 -----DSADTYLHRVGRAGRFGTKG--LAITFVSSASDSDILNQVQARFEV 401 (418)
Q Consensus 358 -----~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 401 (418)
.|...|+||+||+||.|..| .+++++. .++...+..+++.++.
T Consensus 419 ~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~-~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 419 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLL-EDDSELLSAFIERAKL 468 (1054)
T ss_dssp TEEEEECHHHHHHHHHTTCCEETTEECCEEEEEE-CSCHHHHHHHHHHHHT
T ss_pred cceecCcHHHHhhhhchhhhccCCCCceEEEEEE-ecCHHHHHHHHHHHhh
Confidence 78999999999999987776 3777777 4466677777777664
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.4e-39 Score=311.91 Aligned_cols=323 Identities=18% Similarity=0.216 Sum_probs=243.2
Q ss_pred HCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 54 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 54 ~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
..|+ .|++.|..+++.+++|+ +..++||+|||++|.++++.....+ ..++|++||++|+.|.++++..+...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g---~~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4589 99999999999999998 9999999999999999998544332 379999999999999999999998888
Q ss_pred CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccCCC--------
Q 014801 134 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESLD-------- 198 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~~~-------- 198 (418)
++++..+.|+.+...+..... ++|+|+||..| ..+++.. ...+..+.++|+||||.+.-+..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~~---~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAYA---ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHHH---SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHhcC---CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 999999999987765544432 59999999999 5555432 35678899999999999872222
Q ss_pred -------CHHHHHHHHhhCC---------CCccEE-----------------EEEecCCc---cHHHHH--HHhcC-CCe
Q 014801 199 -------MRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSK---EIRPVC--KKFMQ-DPM 239 (418)
Q Consensus 199 -------~~~~~~~~~~~~~---------~~~~~i-----------------~lSAT~~~---~~~~~~--~~~~~-~~~ 239 (418)
+...+..+...++ +..++. ++|||.+. .+...+ ..++. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 4455666666654 234444 56666542 111111 11111 000
Q ss_pred EE------------------------------------------------------------------------------
Q 014801 240 EI------------------------------------------------------------------------------ 241 (418)
Q Consensus 240 ~~------------------------------------------------------------------------------ 241 (418)
.+
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 00
Q ss_pred ----EEcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCH
Q 014801 242 ----YVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 315 (418)
Q Consensus 242 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 315 (418)
...+........-.+.++..+...+...+...+.. ..+.++||||++++.++.++..|.+.|+++..+|+++..
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 00011110111111224455667777777776654 246789999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhcCCccEEEEecccccCCCCC--------CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 316 EERLTRYKGFKEGNKRILVATDLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 316 ~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
.++..+..+++.| .|+|||+++++|+|++ +..+||.++.|.|...|.||+||+||.|.+|.++.|++..+
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887666666665 6999999999999999 77899999999999999999999999999999999999776
Q ss_pred c
Q 014801 388 D 388 (418)
Q Consensus 388 ~ 388 (418)
+
T Consensus 547 ~ 547 (844)
T 1tf5_A 547 E 547 (844)
T ss_dssp S
T ss_pred H
Confidence 5
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.6e-40 Score=321.32 Aligned_cols=310 Identities=16% Similarity=0.175 Sum_probs=229.0
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceE
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 137 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 137 (418)
.+|+++|.++++.++.++++++++|||+|||.+++.++...+.... .++||++|+++|+.||.++++++.... +..+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~-~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFS-HAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSC-GGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCC-ccce
Confidence 3899999999999999999999999999999999888777664322 289999999999999999998875433 6788
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
..+.|+...... ..+..+|+|+|++.+.. .....+.++++||+||+|.+.. ..+..++..+....+++
T Consensus 189 ~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 189 KKIGGGASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EECGGGCCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTTCCEEE
T ss_pred EEEecCCccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcccCcEEE
Confidence 888887665443 23446999999997653 3334567899999999998765 45667777777788999
Q ss_pred EEEecCCccHHHHH--HHhcCCCeEEEEcCC-----cccccccceEEEEEech---------------------hhHHHH
Q 014801 218 MFSATLSKEIRPVC--KKFMQDPMEIYVDDE-----AKLTLHGLVQHYIKLSE---------------------LEKNRK 269 (418)
Q Consensus 218 ~lSAT~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------------~~~~~~ 269 (418)
++|||++....... ..+.. +........ ...............+. ..+...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 99999976532211 11111 111111110 00000011111111111 112233
Q ss_pred HHHHHhhc---CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEe-cccccCCCC
Q 014801 270 LNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDI 345 (418)
Q Consensus 270 l~~~~~~~---~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~l~~G~d~ 345 (418)
+..++... .+.++|||++ .+.++.+++.|.+.+..+..+||+++..+|..+++.|.+|+.+||||| +++++|+|+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 44444333 3445566666 899999999999988899999999999999999999999999999999 999999999
Q ss_pred CCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEec
Q 014801 346 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 384 (418)
Q Consensus 346 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 384 (418)
|++++||+++.++|+..|.|++||+||.|+.+.++.+++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999998874454444
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-40 Score=318.28 Aligned_cols=293 Identities=20% Similarity=0.255 Sum_probs=218.7
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce-E
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 137 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~-~ 137 (418)
+|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.||.++++++ +++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CCcce
Confidence 7899999999999999999999999999999998877765 227999999999999999998884 677 8
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
..++|+... ..+|+|+|++.+....... ..++++||+||+|.+.+ ..+.. +...+ ...+++
T Consensus 162 ~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~-~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA-ESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEBSSSCBC----------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTS-TTTHH----HHHTC-CCSEEE
T ss_pred EEECCCcCC----------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCC-hHHHH----HHHhc-CCCeEE
Confidence 888876542 2599999999998765421 24589999999999886 45443 33333 457799
Q ss_pred EEEecCCcc-------------------HHHHHHHhcCCCeE--EEEcCCccc--c---------------------ccc
Q 014801 218 MFSATLSKE-------------------IRPVCKKFMQDPME--IYVDDEAKL--T---------------------LHG 253 (418)
Q Consensus 218 ~lSAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~~--~---------------------~~~ 253 (418)
++|||+... ...+...+...+.. +.+...... . ...
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 999999732 12221111111111 001000000 0 000
Q ss_pred ceEE---------------------EEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCC
Q 014801 254 LVQH---------------------YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 312 (418)
Q Consensus 254 ~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~ 312 (418)
.... .+.+....+...+.+++....++++||||++.+.++.+++.|. +..+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~ 377 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHR 377 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCC
Confidence 0000 0001123455677777887788999999999999999999883 5678999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCc-ee--EEEEecCC
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-GL--AITFVSSA 386 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~--~~~~~~~~ 386 (418)
++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.++|+..|.|++||+||.|+. +. ++.++...
T Consensus 378 ~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 378 TSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999854 34 44455543
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.6e-37 Score=297.57 Aligned_cols=322 Identities=17% Similarity=0.188 Sum_probs=227.6
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
|. .|++.|..+++.+++|+ +..++||+|||++|.++++.....+ .+++|++||++|+.|.++++..++... ++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g---~~vlVltPTreLA~Q~~e~~~~l~~~l-gl 144 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAENNRPLFEFL-GL 144 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS---SCCEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC---CcEEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 54 89999999999999988 9999999999999999998554433 379999999999999999999999888 99
Q ss_pred eEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccCCC----------
Q 014801 136 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESLD---------- 198 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~~~---------- 198 (418)
++..+.||.+...+.... + ++|+|+||..| ..+++.. ...++++.++|+||||.+..+.+
T Consensus 145 ~v~~i~GG~~~~~r~~~~--~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~ 221 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAY--A-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPA 221 (853)
T ss_dssp CEEECCTTCCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-
T ss_pred eEEEEeCCCCHHHHHHhc--C-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCC
Confidence 999999998865444333 2 59999999999 6766644 25678999999999999873221
Q ss_pred -----CHHHHHHHHhhCCC--------------------CccEE------------------------EEEecCCcc---
Q 014801 199 -----MRRDVQEIFKMTPH--------------------DKQVM------------------------MFSATLSKE--- 226 (418)
Q Consensus 199 -----~~~~~~~~~~~~~~--------------------~~~~i------------------------~lSAT~~~~--- 226 (418)
+...+..+...++. ..++. ++|||.+..
T Consensus 222 ~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~ 301 (853)
T 2fsf_A 222 EDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHH 301 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHH
Confidence 23334444433332 22322 667775431
Q ss_pred HHHHH--HHhcCC---------------------------------C----eEEE-------------------------
Q 014801 227 IRPVC--KKFMQD---------------------------------P----MEIY------------------------- 242 (418)
Q Consensus 227 ~~~~~--~~~~~~---------------------------------~----~~~~------------------------- 242 (418)
+...+ ..++.. + ..+.
T Consensus 302 i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~G 381 (853)
T 2fsf_A 302 VTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAG 381 (853)
T ss_dssp -------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhc
Confidence 11100 000000 0 0000
Q ss_pred ---------------------EcCCcccccccceEEEEEechhhHHHHHHHHHhh--cCCCeEEEEeCCchhHHHHHHHH
Q 014801 243 ---------------------VDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLL 299 (418)
Q Consensus 243 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~~~~~L 299 (418)
..+........-.+.++..+...+...+...+.. ..+.++||||++++.++.+++.|
T Consensus 382 mTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 382 MTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp EECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 0001110111111224556677788887777754 35678999999999999999999
Q ss_pred HhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC-------------------------------
Q 014801 300 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------- 348 (418)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~------------------------------- 348 (418)
.+.|+++.++|+++...++..+.++|+.| .|+|||+++++|+|++..
T Consensus 462 ~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (853)
T 2fsf_A 462 TKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDA 539 (853)
T ss_dssp HHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhH
Confidence 99999999999999888888888899988 599999999999999964
Q ss_pred ------CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 349 ------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 349 ------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
.+||.++.|.|...|.|++||+||.|.+|.++.|++..++.
T Consensus 540 V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 540 VLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999976653
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.4e-36 Score=294.43 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=247.9
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+ .|++.|..+++.+++|+ +..++||+|||+++.++++.....+. .++|++||+.|+.|.++++..+...+ +
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~l-G 180 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFL-G 180 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 477 99999999999999988 99999999999999999975443332 79999999999999999999999888 9
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCCCccEEEEechhhhccCC----------
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL---------- 197 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~iViDE~h~~~~~~---------- 197 (418)
+++..+.|+.+...+..... ++|+|+||..| ..+++.. ...+..+.++|+||||.+..+.
T Consensus 181 Lsv~~i~gg~~~~~r~~~y~---~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 181 LQVGVILATMTPDERRVAYN---ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp CCEEECCTTCCHHHHHHHHH---SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred CeEEEEeCCCCHHHHHHhcC---CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 99999999988665544432 59999999998 6666543 3567889999999999987321
Q ss_pred -----CCHHHHHHHHhhCC---------CCccEE-----------------EEEecCCccHH---HHH--HHhcC-CC--
Q 014801 198 -----DMRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSKEIR---PVC--KKFMQ-DP-- 238 (418)
Q Consensus 198 -----~~~~~~~~~~~~~~---------~~~~~i-----------------~lSAT~~~~~~---~~~--~~~~~-~~-- 238 (418)
++...+..+...++ +..++. ++|||.+.-.. ..+ ..++. +.
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dY 337 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDY 337 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTE
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccce
Confidence 35566777777776 556676 77888764222 211 11111 11
Q ss_pred -----eEEEEcC--------------------------------------------------------------------
Q 014801 239 -----MEIYVDD-------------------------------------------------------------------- 245 (418)
Q Consensus 239 -----~~~~~~~-------------------------------------------------------------------- 245 (418)
..+.++.
T Consensus 338 iV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~ 417 (922)
T 1nkt_A 338 IVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK 417 (922)
T ss_dssp EECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred eeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC
Confidence 0000110
Q ss_pred -------CcccccccceEEEEEechhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHH
Q 014801 246 -------EAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQE 316 (418)
Q Consensus 246 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 316 (418)
........-.+.++..+...+...+...+... .+.++||||++++.++.+++.|.+.|+++.++|+++...
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 00000000011244556667777776666442 567899999999999999999999999999999998888
Q ss_pred HHHHHHHhhhcCCccEEEEecccccCCCCCCC------------------------------------------------
Q 014801 317 ERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------------------------ 348 (418)
Q Consensus 317 ~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~------------------------------------------------ 348 (418)
++..+.++|+.| .|+|||+++++|+|++..
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888888888 599999999999999975
Q ss_pred ----CEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 349 ----NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 349 ----~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
.+||.++.|.|...|.|++||+||.|.+|.++.|++..++.
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999966653
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3e-38 Score=298.87 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=206.5
Q ss_pred CCCCCcHHHHHhHHhhhcCCcE-EEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 56 GFEHPSEVQHECIPQAILGMDV-ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~-~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
|+.+++|.|+ +++.++.++++ ++++|||||||++++++++..+... +.++++++|+++|+.|+.+.+. +
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~-------g 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR-------G 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT-------T
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc-------C
Confidence 5678899985 79999988876 9999999999999888887655432 2389999999999999988764 3
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHH-hhCCCC
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-KMTPHD 213 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~-~~~~~~ 213 (418)
..+....+.... .......|.++|++.+...+... ..+.++++||+||+|.+.. .....+..+. ......
T Consensus 71 ~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~--~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 71 LPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDP--CSVAARGYISTRVEMGE 141 (451)
T ss_dssp SCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCSH--HHHHHHHHHHHHHHTTS
T ss_pred ceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCCc--chHHHHHHHHHhhcCCC
Confidence 333322211110 11223478899999988766544 4578999999999997621 2222221121 123356
Q ss_pred ccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHH
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 293 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~ 293 (418)
.++++||||++...... +..++..+........ . .+ .. +...+.. ..+++||||++++.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~--~----~~-----~~----~~~~l~~-~~~~~lVF~~s~~~a~ 202 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPE--R----SW-----NT----GFDWITD-YQGKTVWFVPSIKAGN 202 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCS--S----CC-----SS----SCHHHHH-CCSCEEEECSSHHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccCCc--h----hh-----HH----HHHHHHh-CCCCEEEEcCCHHHHH
Confidence 89999999998753321 2222222222211100 0 00 00 1112222 2479999999999999
Q ss_pred HHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEec------------------
Q 014801 294 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD------------------ 355 (418)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~------------------ 355 (418)
.+++.|.+.++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 203 ~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 203 DIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 999999999999999999754 56889999999999999999999999999 9999988
Q ss_pred --CCCChhhhhhhcccccCCCC-ceeEEEEecC
Q 014801 356 --MPDSADTYLHRVGRAGRFGT-KGLAITFVSS 385 (418)
Q Consensus 356 --~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 385 (418)
.|.|..+|.||+||+||.|. +|.+++++..
T Consensus 278 ~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 278 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888888753
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.5e-39 Score=313.86 Aligned_cols=327 Identities=16% Similarity=0.120 Sum_probs=228.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 42 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 42 ~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
+++++.+.+.+... ...+.|.|+.+++.+..++++++++|||||||++|+++++..+... +.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 34555555555432 3677888888899999999999999999999999988888766432 34899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHH
Q 014801 122 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 201 (418)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~ 201 (418)
.+.++ +..+. +.+.. .. ........+.++|.+.+...+... ..+.++++||+||||.+. .++..
T Consensus 232 ~~~l~-------~~~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~--~~~~~ 295 (618)
T 2whx_A 232 EEALR-------GLPIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTD--PCSVA 295 (618)
T ss_dssp HHHTT-------TSCEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCCS--HHHHH
T ss_pred HHHhc-------CCcee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCCC--ccHHH
Confidence 87765 22333 22111 00 111222367788888887655543 457899999999999872 34455
Q ss_pred HHHHHHhhCC-CCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCC
Q 014801 202 DVQEIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 280 (418)
Q Consensus 202 ~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (418)
.+..+..... ...|++++|||++.....+.. .++..+.+..... .......+. .+.. ..+
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~--------------~~~~~~ll~-~l~~-~~~ 356 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP--------------ERSWNTGFD-WITD-YQG 356 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC--------------SSCCSSSCH-HHHH-CCS
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC--------------HHHHHHHHH-HHHh-CCC
Confidence 5555555443 568999999999876432221 1222222221110 000001111 1222 357
Q ss_pred eEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEE---------
Q 014801 281 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV--------- 351 (418)
Q Consensus 281 ~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~v--------- 351 (418)
++||||++++.++.+++.|.+.++.+..+|+. +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 99999999999999999999999999999984 677899999999999999999999999998 8888
Q ss_pred -----------EEecCCCChhhhhhhcccccCCCC-ceeEEEEec--CCCcHHHHHHHHHHhccCccccCcccc
Q 014801 352 -----------INYDMPDSADTYLHRVGRAGRFGT-KGLAITFVS--SASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 352 -----------i~~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|+++.|.|..+|+||+||+||.|. +|.+++++. ..++...++.+++.+..+-..+++.+.
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~~ 505 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGII 505 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCC
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcchh
Confidence 667779999999999999999964 899999986 245555667777766554445544443
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.4e-38 Score=311.63 Aligned_cols=332 Identities=14% Similarity=0.176 Sum_probs=236.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhc-CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~-~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
..+|.++++++.+.+.+...+ ..|.+.|++++..++. +++++++||||+|||+..-..++........+.++++++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 346999999999999999887 6888899999888776 56799999999999984333333222222123479999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh-h
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-M 193 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~-~ 193 (418)
++|+.|+++.+........+..+..-..... ......+|+++|++.+.+.+... ..+.++++||+||+|. .
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~-------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN-------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERT 221 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEETTEE-------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCC
T ss_pred HHHHHHHHHHHHHHhCCchhheecceecccc-------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccc
Confidence 9999999887765442211222222111100 11234689999999999866654 4588999999999995 2
Q ss_pred ccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhH----HHH
Q 014801 194 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK----NRK 269 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 269 (418)
.+.......+..+.... ...+++++|||++. ..+ ..++.+...+.+.... ..+...+........ ...
T Consensus 222 ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l-~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 222 LATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKF-QRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHH-HHHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHH-HHHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHH
Confidence 22111223344444333 46889999999964 333 3444443333332221 122223322222222 233
Q ss_pred HHHHHhhcCCCeEEEEeCCchhHHHHHHHHHh-----------CCCCeEEecCCCCHHHHHHHHHhhh-----cCCccEE
Q 014801 270 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-----------CNFPSICIHSGMSQEERLTRYKGFK-----EGNKRIL 333 (418)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vl 333 (418)
+..+.....++++||||++++.++.+++.|.+ .++.+..+||+++.++|..+++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 33444445678999999999999999999975 4678899999999999999999999 9999999
Q ss_pred EEecccccCCCCCCCCEEEEecC------------------CCChhhhhhhcccccCCCCceeEEEEecC
Q 014801 334 VATDLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 334 v~t~~l~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||. .+|.|+.++..
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 99999999999999999999777 88999999999999998 79999999873
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.8e-38 Score=295.44 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=199.1
Q ss_pred hhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH
Q 014801 70 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 149 (418)
Q Consensus 70 ~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (418)
.+.+++++++++|||||||++++++++..+..+ +.+++|++||++|+.|+++.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~---- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFS---- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccce----
Confidence 456789999999999999999988888765433 238999999999999998877633 2222111100
Q ss_pred HHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhC-CCCccEEEEEecCCccHH
Q 014801 150 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 228 (418)
Q Consensus 150 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~ 228 (418)
.......-+-..+...+...+. ....+.+++++|+||+|.+. ..+...+..+.... ...+++++||||+++...
T Consensus 71 --~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~~--~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 71 --AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLD--PASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp --CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCS--HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred --eccCCccceeeecccchhHhhh-CcccccCccEEEEECccccC--cchHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 0011111122233333333222 23457899999999999872 12222222222221 356899999999987643
Q ss_pred HHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEE
Q 014801 229 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 308 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~ 308 (418)
.+... ..+...... ..+.......+..+.. .++++||||++++.++.+++.|.+.++++..
T Consensus 146 ~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 146 EFPHS--NGEIEDVQT---------------DIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SSCCC--SSCEEEEEC---------------CCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhc--CCCeeEeee---------------ccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 22211 111111100 0111111111111222 2579999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE-------------------ecCCCChhhhhhhccc
Q 014801 309 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------------------YDMPDSADTYLHRVGR 369 (418)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR 369 (418)
+|| ++|..+++.|++|+++|||||+++++|+|+| +++||+ ++.|.+..+|.||+||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 999 3678889999999999999999999999999 999986 8889999999999999
Q ss_pred ccCC-CCceeEEEEec--CCCcHHHHHHHHHHhccCccccCcccccCC
Q 014801 370 AGRF-GTKGLAITFVS--SASDSDILNQVQARFEVDIKELPEQIDTST 414 (418)
Q Consensus 370 ~~R~-~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (418)
+||. |++|.+++++. ..++...++.++..+.....+++.....+.
T Consensus 282 ~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~ 329 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPL 329 (440)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCCCCC
T ss_pred cCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccccccc
Confidence 9997 68999999973 456667777788777666666665554443
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.9e-37 Score=296.57 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=208.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.++++|++++..+..+++++++||||+|||.++.++++.. +.++++++|+++|+.|+++.+.+.. +..+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPN 286 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCee
Confidence 5567777777777788999999999999999998888763 2279999999999999998887665 45556
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCcc--E
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ--V 216 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~--~ 216 (418)
...|+.. .....+|+|+||++|. ....+.+.++++||+||+|.+.. ++...+..+....+...+ +
T Consensus 287 ~~vG~~~--------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~--~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 287 IRTGVRT--------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDS--TTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EECSSCE--------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSH--HHHHHHHHHHHHTTTTTCSEE
T ss_pred EEECcEe--------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcCc--cHHHHHHHHHHhhhhcCCceE
Confidence 6666543 2334699999999983 56667788999999999987653 566667777777766555 7
Q ss_pred EEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHH
Q 014801 217 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 296 (418)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~ 296 (418)
+++|||++.... ...+....+..... .....+ ..... +....++++||||++++.++.++
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~~----~~i~~~---~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSNT----GEIPFY---GKAIP-------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBSC----SSEEET---TEEEC-------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeeccc----chhHHH---Hhhhh-------hhhccCCcEEEEeCCHHHHHHHH
Confidence 888999987421 11111111111100 000000 00000 22336689999999999999999
Q ss_pred HHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE----------ec-----------
Q 014801 297 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----------YD----------- 355 (418)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~----------~~----------- 355 (418)
+.|.+.++.+..+||++++++ |.++..+|||||+++++|+|+| +++||+ |+
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999764 5566679999999999999997 999884 55
Q ss_pred CCCChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 356 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
.|.|..+|+||+||+|| |++|. +.|+.+.+.
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 78899999999999999 89999 888876554
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.3e-37 Score=302.04 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=189.2
Q ss_pred CCcHHHHHhHHhhhc-----CCcEEEEccCCCchhhHHHHHhhhccCCC------CCCeeEEEecCcHHHHHHHH-HHHH
Q 014801 59 HPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQIC-HEFE 126 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~-----~~~~~v~~~tGsGKT~~~~l~~~~~~~~~------~~~~~~lii~P~~~l~~q~~-~~~~ 126 (418)
.|+++|.++++.++. ++++++++|||+|||++++..+...+... ....++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999876 46689999999999999766555444332 13458999999999999998 6666
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc----CCCCCCCccEEEEechhhhccCCCCHHH
Q 014801 127 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMRRD 202 (418)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~----~~~~~~~~~~iViDE~h~~~~~~~~~~~ 202 (418)
.+ +..+..+.++. .....+|+|+|++.|...... ..+....+++||+||||++... ....
T Consensus 258 ~~-----~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~~ 321 (590)
T 3h1t_A 258 PF-----GDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNSN 321 (590)
T ss_dssp TT-----CSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hc-----chhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chHH
Confidence 55 33333333221 123469999999999876542 2344567899999999998752 1234
Q ss_pred HHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEE------------------cCCcccc------------cc
Q 014801 203 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV------------------DDEAKLT------------LH 252 (418)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~------------~~ 252 (418)
+..++..+. ..+++++|||+..........+++.+...+. ....... ..
T Consensus 322 ~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 445555554 3679999999875433333333333322210 0000000 00
Q ss_pred cceEEEEEechh-------hHHH----HHHHHHhh-cCCCeEEEEeCCchhHHHHHHHHHhCCC--------CeEEecCC
Q 014801 253 GLVQHYIKLSEL-------EKNR----KLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNF--------PSICIHSG 312 (418)
Q Consensus 253 ~~~~~~~~~~~~-------~~~~----~l~~~~~~-~~~~~~lif~~~~~~~~~~~~~L~~~~~--------~~~~~~~~ 312 (418)
.+.......... .+.. .+...+.. .+.+++||||+++++++.+++.|.+.+. .+..+||.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 000000000000 0111 12222333 3458999999999999999999976533 26677887
Q ss_pred CCHHHHHHHHHhhhcCCcc---EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCC--ceeEEEEecCC
Q 014801 313 MSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT--KGLAITFVSSA 386 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~---vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 386 (418)
++ ++|..+++.|++|+.+ |+|||+++++|+|+|++++||+++.++|...|.||+||++|.+. .+..+++++..
T Consensus 481 ~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 481 EG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred Ch-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 65 4799999999998765 88889999999999999999999999999999999999999875 44444455533
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7.7e-38 Score=306.23 Aligned_cols=299 Identities=17% Similarity=0.200 Sum_probs=207.6
Q ss_pred CCcHHHH-----HhHHhhh------cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 59 HPSEVQH-----ECIPQAI------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 59 ~l~~~Q~-----~~~~~~~------~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
.|++.|+ ++++.++ .++++++++|||||||++|+++++..+... +.+++|++||++|+.|+.+.++.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhc
Confidence 8899999 9999888 799999999999999999988888775432 24899999999999999887764
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHH
Q 014801 128 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 207 (418)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~ 207 (418)
+ ++. ...+... .......-+-+.+...+...+... ..+.++++||+||+|.+.. .....+..+.
T Consensus 293 ~-----~i~--~~~~~l~------~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~--~~~~~~~~l~ 356 (673)
T 2wv9_A 293 L-----PVR--YLTPAVQ------REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDP--ASIAARGYIA 356 (673)
T ss_dssp S-----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCH--HHHHHHHHHH
T ss_pred C-----Cee--eeccccc------ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCc--cHHHHHHHHH
Confidence 4 222 1111000 011111234455656665444443 5688999999999998721 1112222222
Q ss_pred hhC-CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEe
Q 014801 208 KMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFV 286 (418)
Q Consensus 208 ~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~ 286 (418)
... ...+++++||||++..+..+... ..+....... .+.......+..+.. .++++||||
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~~~~~~l~~l~~--~~~~~lVF~ 417 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDRAWSSGFEWITD--YAGKTVWFV 417 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSSCCSSCCHHHHS--CCSCEEEEC
T ss_pred HhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee---------------cCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 222 25689999999998763322111 1111111100 011111111112222 468999999
Q ss_pred CCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE-------------
Q 014801 287 KSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN------------- 353 (418)
Q Consensus 287 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~------------- 353 (418)
++++.++.+++.|.+.++.+..+|+. +|..+++.|++|+++|||||+++++|+|+| +++||+
T Consensus 418 ~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da 492 (673)
T 2wv9_A 418 ASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEG 492 (673)
T ss_dssp SSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECST
T ss_pred CCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecc
Confidence 99999999999999999999999994 788899999999999999999999999999 999997
Q ss_pred -------ecCCCChhhhhhhcccccCC-CCceeEEEEec--CCCcHHHHHHHHHHh
Q 014801 354 -------YDMPDSADTYLHRVGRAGRF-GTKGLAITFVS--SASDSDILNQVQARF 399 (418)
Q Consensus 354 -------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~~--~~~~~~~~~~~~~~~ 399 (418)
++.|.|..+|.||+||+||. |++|.+++++. ..++...++.++..+
T Consensus 493 ~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 493 EGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp TCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 55788999999999999998 78999999973 345555555565554
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.7e-37 Score=291.07 Aligned_cols=281 Identities=16% Similarity=0.157 Sum_probs=191.3
Q ss_pred HHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 014801 65 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 144 (418)
Q Consensus 65 ~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 144 (418)
......+..++++++++|||+|||++|+++++..+... +.++||++|+++|+.|+.+.++ +..+....+..
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~ 82 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAV 82 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT-------TSCEEECC---
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc-------CceEeEEeccc
Confidence 33344556688999999999999999999988766432 2389999999999999988775 23332211111
Q ss_pred chHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 145 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 145 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
... ......+.++|...+...+... ..+.++++||+||||.+.........+..... .....+++++|||++
T Consensus 83 ~~~------~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 83 QRE------HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-ELGEAAAIFMTATPP 154 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCT
T ss_pred ccC------CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-ccCCccEEEEEcCCC
Confidence 100 1122367788888877655543 46789999999999974210011111111111 125689999999998
Q ss_pred ccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCC
Q 014801 225 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 304 (418)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~ 304 (418)
.....+... ..+............ ..... ..+.. .++++||||++++.++.+++.|.+.++
T Consensus 155 ~~~~~~~~~--~~pi~~~~~~~~~~~------------~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 155 GTTDPFPDS--NAPIHDLQDEIPDRA------------WSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp TCCCSSCCC--SSCEEEEECCCCSSC------------CSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cchhhhccC--CCCeEEecccCCcch------------hHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 764322111 222222111000000 00011 12222 257999999999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEE--------------------ecCCCChhhhh
Q 014801 305 PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN--------------------YDMPDSADTYL 364 (418)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~--------------------~~~~~s~~~~~ 364 (418)
.+..+|+. +|..+++.|.+|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|.
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHH
T ss_pred cEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHH
Confidence 99999985 6778899999999999999999999999999 99998 66999999999
Q ss_pred hhcccccCCCC-ceeEEEEecCC
Q 014801 365 HRVGRAGRFGT-KGLAITFVSSA 386 (418)
Q Consensus 365 Q~~GR~~R~~~-~g~~~~~~~~~ 386 (418)
||+||+||.|. +|.+++++...
T Consensus 291 QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 291 QRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCCeEEEEEccc
Confidence 99999999997 89999999865
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.5e-36 Score=310.44 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=223.1
Q ss_pred CCCcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 58 EHPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
.+|+|||.+++..++. +.+++++++||+|||.+++..+......+..+ ++||+||+ +|+.||.+++.+.. ++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f----~l 225 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF----NL 225 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS----CC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh----CC
Confidence 3799999999998887 44799999999999999877776666544433 79999999 99999999997664 56
Q ss_pred eEEEEEcCcchHHHHHH-hhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEechhhhccCCCCH-HHHHHHHhhCCC
Q 014801 136 KVAVFYGGVNIKIHKDL-LKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPH 212 (418)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE~h~~~~~~~~~-~~~~~~~~~~~~ 212 (418)
++..+.++......... ..-...+|+|+|++.+.+.... ..+...++++||+||||++.+..... .....+......
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 66666554322211110 0112359999999988642111 11224578999999999997643321 112222222234
Q ss_pred CccEEEEEecCCc----cHHHHHHHhcCC---------------------------C-----------------------
Q 014801 213 DKQVMMFSATLSK----EIRPVCKKFMQD---------------------------P----------------------- 238 (418)
Q Consensus 213 ~~~~i~lSAT~~~----~~~~~~~~~~~~---------------------------~----------------------- 238 (418)
..+++++||||.. +....+...... .
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 5579999999842 111111100000 0
Q ss_pred ------------------------------eEEEEcC-C-cccccccceEEEE---------------------------
Q 014801 239 ------------------------------MEIYVDD-E-AKLTLHGLVQHYI--------------------------- 259 (418)
Q Consensus 239 ------------------------------~~~~~~~-~-~~~~~~~~~~~~~--------------------------- 259 (418)
..+.... . .............
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 0000000 0 0000000000000
Q ss_pred ------------------EechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHh-CCCCeEEecCCCCHHHHHH
Q 014801 260 ------------------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLT 320 (418)
Q Consensus 260 ------------------~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~ 320 (418)
......+...+..++....++++||||++.+.++.++..|.+ .|+++..+||+++..+|..
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 112234667788888887889999999999999999999994 6999999999999999999
Q ss_pred HHHhhhcCC--ccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEe
Q 014801 321 RYKGFKEGN--KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 383 (418)
Q Consensus 321 ~~~~f~~g~--~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 383 (418)
+++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.|.++++.
T Consensus 546 ~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999998 999999999999999999999999999999999999999999999998666553
No 52
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.9e-35 Score=251.17 Aligned_cols=214 Identities=80% Similarity=1.320 Sum_probs=186.1
Q ss_pred CCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeE
Q 014801 29 QGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA 108 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~ 108 (418)
+.+...+..+|+++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++++++++..+.......++
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 85 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence 45556667789999999999999999999999999999999999999999999999999999999999988766656689
Q ss_pred EEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEe
Q 014801 109 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 188 (418)
Q Consensus 109 lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 188 (418)
+|++|+++|+.|+.+.++++....+++++..+.|+.....+...+..+.++|+|+||+.+..++......+.+++++|+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 99999999999999999999877668899999999888777777766667999999999999998888889999999999
Q ss_pred chhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEE
Q 014801 189 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 242 (418)
Q Consensus 189 E~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (418)
|||.+.+..++...+..+....+...+++++|||++.....+++.++.+|..+.
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999997645677788888888888899999999999999999999999887653
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.8e-35 Score=277.97 Aligned_cols=269 Identities=13% Similarity=0.137 Sum_probs=185.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
++++++++|||||||.+++++++..+... +.+++|++||++|+.|+.+.+. ++.+....++... .
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------E 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------c
Confidence 67899999999999999988888554332 2389999999999999887664 4455554443211 1
Q ss_pred hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhh-CCCCccEEEEEecCCccHHHHHH
Q 014801 154 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEIRPVCK 232 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~~~ 232 (418)
......+.++|.+.+...+.. ...+.++++||+||+|.+.. .+......+... ....+++++||||+++....+..
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~--~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~ 143 (431)
T 2v6i_A 67 RTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP--ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP 143 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH--HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC
T ss_pred CCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCc--cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC
Confidence 122246777888888765554 45688999999999998732 222222222222 24578999999999875322111
Q ss_pred HhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCC
Q 014801 233 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 312 (418)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~ 312 (418)
. ..+....... .+... ...+...+.. .++++||||++++.++.+++.|.+.++.+..+||+
T Consensus 144 ~--~~~i~~~~~~---------------~~~~~-~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 144 S--NSPIIDEETR---------------IPDKA-WNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp C--SSCCEEEECC---------------CCSSC-CSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred C--CCceeecccc---------------CCHHH-HHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 0 1111110000 00000 0111122222 25789999999999999999999999999999997
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCE-----------------EEEecCCCChhhhhhhcccccCCCC
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI-----------------VINYDMPDSADTYLHRVGRAGRFGT 375 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~~~ 375 (418)
+|..+++.|.+|+.+|||||+++++|+|+| +++ +|+++.|.+..+|.||+||+||.|.
T Consensus 205 ----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 ----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 577889999999999999999999999999 555 5678889999999999999999985
Q ss_pred -ceeEEEEec
Q 014801 376 -KGLAITFVS 384 (418)
Q Consensus 376 -~g~~~~~~~ 384 (418)
.|.++++..
T Consensus 280 ~~~~~~~~~~ 289 (431)
T 2v6i_A 280 KLGDIYAYSG 289 (431)
T ss_dssp CCCCEEEECS
T ss_pred CCCeEEEEcC
Confidence 455555553
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.4e-35 Score=280.63 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=209.6
Q ss_pred CCcHHHHHhHHhhh----cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 59 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~----~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+|||.+++..+. .+.+++++++||+|||++++..+........ ..++||||| .+|+.||.++++++. ++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P-~~l~~qw~~e~~~~~---~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICP-LSVLKNWEEELSKFA---PH 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEEC-STTHHHHHHHHHHHC---TT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEcc-HHHHHHHHHHHHHHC---CC
Confidence 79999999998764 4788999999999999987665555443333 237999999 568999999999885 35
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCc
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 214 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~ 214 (418)
.++..+.|+... ......+|+|+|++.+.+... +....+++||+||||.+.+.. ... ......+ ...
T Consensus 112 ~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~-~~~l~~l-~~~ 178 (500)
T 1z63_A 112 LRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKI-FKAVKEL-KSK 178 (500)
T ss_dssp SCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHH-HHHHHTS-CEE
T ss_pred ceEEEEecCchh------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHH-HHHHHhh-ccC
Confidence 677777665421 111235999999999975433 233467899999999997632 222 2233333 345
Q ss_pred cEEEEEecCCcc-HHHH---H---------------------------------HHhcCCCeEEEEcCCc---ccccccc
Q 014801 215 QVMMFSATLSKE-IRPV---C---------------------------------KKFMQDPMEIYVDDEA---KLTLHGL 254 (418)
Q Consensus 215 ~~i~lSAT~~~~-~~~~---~---------------------------------~~~~~~~~~~~~~~~~---~~~~~~~ 254 (418)
+.+++||||..+ ..++ + ...+ .+..+...... ...+...
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCC
Confidence 689999999532 1111 0 0111 11111110000 0011111
Q ss_pred eEEEEEec--h-------------------------------------------------------hhHHHHHHHHHhhc
Q 014801 255 VQHYIKLS--E-------------------------------------------------------LEKNRKLNDLLDAL 277 (418)
Q Consensus 255 ~~~~~~~~--~-------------------------------------------------------~~~~~~l~~~~~~~ 277 (418)
....+.+. . ..+...+.+++...
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 11111111 1 12223333444433
Q ss_pred --CCCeEEEEeCCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcC-Ccc-EEEEecccccCCCCCCCCEEE
Q 014801 278 --DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVATDLVGRGIDIERVNIVI 352 (418)
Q Consensus 278 --~~~~~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t~~l~~G~d~~~~~~vi 352 (418)
.+.++||||+..+.++.+...|.+. +..+..+||+++..+|..+++.|++| +.+ +|++|.++++|+|+|.+++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 5679999999999999999999875 99999999999999999999999988 565 788999999999999999999
Q ss_pred EecCCCChhhhhhhcccccCCCCceeE--EEEec
Q 014801 353 NYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVS 384 (418)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~--~~~~~ 384 (418)
++++|+|+..+.|++||++|.|+.+.+ +.++.
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~ 451 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 451 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe
Confidence 999999999999999999999988765 34444
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.6e-34 Score=242.07 Aligned_cols=204 Identities=32% Similarity=0.562 Sum_probs=183.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++++++.+...|+..|+++|.++++.++.++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 35799999999999999999999999999999999999999999999999999999999998887666666899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++....++.++..+.|+.........+.. ..+|+|+||+++...+......+.+++++|+||||.+.+
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCC-CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 9999999999999877667889999998887666555544 369999999999999988888889999999999999887
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEE
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 241 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (418)
.++...+..+....+...+++++|||++.....++..++.+|..+
T Consensus 161 -~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 161 -QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp -TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred -hCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 688889999999888889999999999999999999999888654
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.9e-34 Score=248.94 Aligned_cols=211 Identities=26% Similarity=0.440 Sum_probs=188.1
Q ss_pred cccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-----CCCee
Q 014801 33 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVT 107 (418)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-----~~~~~ 107 (418)
+.+..+|+++++++.+.+.+.+.|+..|+++|.++++.+++|+++++++|||+|||++|+++++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 3345679999999999999999999999999999999999999999999999999999999998876432 23558
Q ss_pred EEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEE
Q 014801 108 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 187 (418)
Q Consensus 108 ~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 187 (418)
+||++|+++|+.|+.+.++++.... ++++..+.|+.........+..+ ++|+|+||+++..++......+.+++++|+
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 9999999999999999999998776 88999999998887777666655 699999999999999888888999999999
Q ss_pred echhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCC
Q 014801 188 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 246 (418)
Q Consensus 188 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (418)
||||.+.+ .++...+..+...++...|++++|||+++.+..++..++.++..+.+...
T Consensus 183 DEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 183 DEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTHHHHHH-TTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred eCHHHHhh-hCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999987 68999999999999889999999999999999999999999988876543
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.1e-34 Score=247.53 Aligned_cols=212 Identities=34% Similarity=0.485 Sum_probs=182.1
Q ss_pred CCcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeE
Q 014801 29 QGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA 108 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~ 108 (418)
....+-+..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.....+.++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 95 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 95 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 44444456779999999999999999999999999999999999999999999999999999999999887665556689
Q ss_pred EEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEe
Q 014801 109 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 188 (418)
Q Consensus 109 lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 188 (418)
||++|+++|+.|+.+.++++....+++++..+.|+.....+...+. ..+|+|+||+++..++......+.+++++|+|
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 9999999999999999999877656889999999988776665554 36999999999999988887788899999999
Q ss_pred chhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEE
Q 014801 189 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 242 (418)
Q Consensus 189 E~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (418)
|||.+.+...+...+..+...++...|++++|||++.....++..++.+|..+.
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 999998743488999999999988899999999999999899999998887653
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.7e-34 Score=246.53 Aligned_cols=207 Identities=42% Similarity=0.621 Sum_probs=175.2
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
...+|+++++++++.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.....+.++||++|+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 34679999999999999999999999999999999999999999999999999999999999988765556689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
++|+.|+.+.++++.... ++.+..+.|+.........+..+.++|+|+||+.+...+......+.++++||+||||.+.
T Consensus 108 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 186 (237)
T 3bor_A 108 RELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML 186 (237)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhh
Confidence 999999999999987665 7888888888776666555655557999999999999998887888999999999999988
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEE
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 243 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (418)
+ .++...+..+....+...+++++|||++..+..++..++.+|..+.+
T Consensus 187 ~-~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 187 S-RGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp H-TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred c-cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 7 57888888998888888999999999999999999999998877644
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8.8e-34 Score=243.00 Aligned_cols=208 Identities=33% Similarity=0.588 Sum_probs=181.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++++|||+|||++++++++..+.....+.+++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35699999999999999999999999999999999999999999999999999999999999887666666899999999
Q ss_pred HHHHHHHHHHHHHhccCC---CceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhh
Q 014801 116 ELAYQICHEFERFSTYLP---DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 192 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~ 192 (418)
+|+.|+.+.++++....+ ++.+..+.|+.........+. ...+|+|+||+++...+......+.+++++|+||||.
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence 999999999999876543 577888888876554433333 2469999999999999888877888999999999999
Q ss_pred hccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcC
Q 014801 193 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 245 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
+.+ .++...+..+....+...|++++|||++.++..+++.++.+|..+....
T Consensus 162 ~~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 162 MLD-MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHH-TTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred Hhh-hChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 987 5788889999998888899999999999999999999999998765443
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.2e-33 Score=241.59 Aligned_cols=206 Identities=37% Similarity=0.596 Sum_probs=176.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
..+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.....+.+++|++|++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 45699999999999999999999999999999999999999999999999999999999999887766666899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhcc
Q 014801 116 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 195 (418)
Q Consensus 116 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~ 195 (418)
+|+.|+.+.++++.... ++++..+.|+.........+.. .+|+|+||+++...+......+.+++++|+||||.+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 93 ELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh
Confidence 99999999999987665 7888888888776655544443 69999999999999888888889999999999999887
Q ss_pred CCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcC
Q 014801 196 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 245 (418)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
.++...+..+....+...+++++|||+++....++..++.+|..+.+..
T Consensus 170 -~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 170 -SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp -TTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred -hhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 5788889999988888899999999999999999999999987765543
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=243.05 Aligned_cols=207 Identities=29% Similarity=0.540 Sum_probs=176.8
Q ss_pred ccccCCCccC-CCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC------CC
Q 014801 32 VGIHSSGFRD-FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PG 104 (418)
Q Consensus 32 ~~~~~~~~~~-~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~------~~ 104 (418)
.|.+..+|++ +++++++.+.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|+++++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 4445567888 7999999999999999999999999999999999999999999999999999988766432 23
Q ss_pred CeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccE
Q 014801 105 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 184 (418)
Q Consensus 105 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 184 (418)
+++++|++|+++|+.|+.+.++++.. .++++..+.|+.........+..+ .+|+|+||+++..++......+.++++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceE
Confidence 45799999999999999999999852 378888889888777666666555 699999999999999888888999999
Q ss_pred EEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEE
Q 014801 185 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 242 (418)
Q Consensus 185 iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (418)
+|+||||.+.+ .++...+..+....+...|++++|||+++....++..++.+|..+.
T Consensus 171 lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLD-MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHH-TTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhc-cchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999987 5889999999999988999999999999999999999999987764
No 62
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=243.26 Aligned_cols=207 Identities=32% Similarity=0.604 Sum_probs=183.2
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
....+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.....+.++||++|
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999988766555568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEechhh
Q 014801 114 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 192 (418)
Q Consensus 114 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE~h~ 192 (418)
+++|+.|+.+.++++.... ++++..+.|+.........+..+ .+|+|+||+++...+.. ..+.+.++++||+||||.
T Consensus 120 tr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTC-CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 9999999999999988776 78899999988766655555444 69999999999998775 456788999999999999
Q ss_pred hccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEE
Q 014801 193 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 243 (418)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (418)
+.+ .++...+..+...++...+++++|||++..+..++..++.+|..+.+
T Consensus 198 l~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 198 ILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHH-TTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhc-cChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 987 58999999999999888999999999999999999999999987654
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.6e-33 Score=273.37 Aligned_cols=279 Identities=16% Similarity=0.162 Sum_probs=203.3
Q ss_pred HHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEc
Q 014801 63 VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 142 (418)
Q Consensus 63 ~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 142 (418)
.|.......+++++++++||||||||..++..+... . +.+|++|+++|+.|+++.+++. ++++..+.|
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~----~---~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG 211 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSA----K---SGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTG 211 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHS----S---SEEEEESSHHHHHHHHHHHHHT-----TCCEEEECS
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc----C---CeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEEC
Confidence 333333455678999999999999998544443332 1 4599999999999999998875 788888888
Q ss_pred CcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCC-CCccEEEEEe
Q 014801 143 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSA 221 (418)
Q Consensus 143 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~i~lSA 221 (418)
+....... .....+++++|++.+. ....++++|+||+|.+.+ .++...+...+.... ...+++++||
T Consensus 212 ~~~~iv~T---pGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~~~l~~l~~~~i~il~~SA 279 (677)
T 3rc3_A 212 EERVTVQP---NGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWTRALLGLCAEEVHLCGEPA 279 (677)
T ss_dssp SCEECCST---TCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHHHHHHHCCEEEEEEEECGG
T ss_pred CeeEEecC---CCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHHHHHHccCccceEEEeccc
Confidence 86541100 0112579999987653 246779999999999976 678888887777776 6788999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHh
Q 014801 222 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 301 (418)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~ 301 (418)
|.+ ....++.. ......+...... ......... + ..+.... ...+|||++++.++.+++.|.+
T Consensus 280 T~~-~i~~l~~~-~~~~~~v~~~~r~-------~~l~~~~~~------l-~~l~~~~-~g~iIf~~s~~~ie~la~~L~~ 342 (677)
T 3rc3_A 280 AID-LVMELMYT-TGEEVEVRDYKRL-------TPISVLDHA------L-ESLDNLR-PGDCIVCFSKNDIYSVSRQIEI 342 (677)
T ss_dssp GHH-HHHHHHHH-HTCCEEEEECCCS-------SCEEECSSC------C-CSGGGCC-TTEEEECSSHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHh-cCCceEEEEeeec-------chHHHHHHH------H-HHHHhcC-CCCEEEEcCHHHHHHHHHHHHh
Confidence 953 22333332 3333333211100 000000000 0 0111222 3458889999999999999999
Q ss_pred CCCCeEEecCCCCHHHHHHHHHhhhc--CCccEEEEecccccCCCCCCCCEEEEecC--------------CCChhhhhh
Q 014801 302 CNFPSICIHSGMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDM--------------PDSADTYLH 365 (418)
Q Consensus 302 ~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~t~~l~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q 365 (418)
.++.+..+||++++++|..+++.|++ |.++|||||+++++|+|+ +++.||+++. |.|..+|.|
T Consensus 343 ~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~Q 421 (677)
T 3rc3_A 343 RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421 (677)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHH
T ss_pred cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHH
Confidence 99999999999999999999999999 889999999999999999 8999999998 779999999
Q ss_pred hcccccCCCCc---eeEEEEe
Q 014801 366 RVGRAGRFGTK---GLAITFV 383 (418)
Q Consensus 366 ~~GR~~R~~~~---g~~~~~~ 383 (418)
|+||+||.|.. |.|+.+.
T Consensus 422 R~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 422 IAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp HHTTBTCTTSSCSSEEEEESS
T ss_pred HhcCCCCCCCCCCCEEEEEEe
Confidence 99999999865 5544443
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=248.46 Aligned_cols=206 Identities=33% Similarity=0.543 Sum_probs=182.5
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
+..+|+++++++.+++.+...|+..|+++|.++++.++.+ +++++++|||+|||++|+++++..+......+++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 3467999999999999999999999999999999999997 89999999999999999999999988777777899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhc-CCCCCCCccEEEEechh
Q 014801 113 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECD 191 (418)
Q Consensus 113 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE~h 191 (418)
|+++|+.|+.+.++.+....+++.+....|+....... ....+|+|+||+++..++.+ ..+.+.++++||+||+|
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 99999999999999998776678888888876543222 23469999999999998865 55678899999999999
Q ss_pred hhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEc
Q 014801 192 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
.+.+..++...+..+...++..+|++++|||++..+..++..++.+|..+.+.
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99875688888999999999999999999999999999999999999887654
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-33 Score=279.71 Aligned_cols=339 Identities=17% Similarity=0.205 Sum_probs=229.4
Q ss_pred CCCcHHHHHhHHhhh----cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 58 EHPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~----~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.+|+|||.+++..+. .+.+++++.+||.|||+.++..+............+||||| .+++.||.+++.+++ +
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---P 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---T
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---C
Confidence 379999999998776 58899999999999998876665544322222226899999 688999999999886 4
Q ss_pred CceEEEEEcCcchHHHHHHh-----------hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHH
Q 014801 134 DIKVAVFYGGVNIKIHKDLL-----------KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 202 (418)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~ 202 (418)
++++..++|+.......... .....+|+|+|++.+...... +....+++||+||||++.+... .
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s---~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES---S 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS---H
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh---H
Confidence 77888888875543322221 223468999999999764322 1123578899999999975322 2
Q ss_pred HHHHHhhCCCCccEEEEEecCCcc----HHHHHHHhcCC-----------------------------CeEEEEcCC-cc
Q 014801 203 VQEIFKMTPHDKQVMMFSATLSKE----IRPVCKKFMQD-----------------------------PMEIYVDDE-AK 248 (418)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~-~~ 248 (418)
.......+ .....+++||||-.+ +..++..+... +..+..... ..
T Consensus 386 ~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 23333333 345679999998321 11111111110 000000000 00
Q ss_pred cccccceEEEEEec------------------------------------------------------------------
Q 014801 249 LTLHGLVQHYIKLS------------------------------------------------------------------ 262 (418)
Q Consensus 249 ~~~~~~~~~~~~~~------------------------------------------------------------------ 262 (418)
..+.......+.+.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 00001111111110
Q ss_pred ---------hhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCc-
Q 014801 263 ---------ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK- 330 (418)
Q Consensus 263 ---------~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~- 330 (418)
.+.+...+..++... .+.++|||++....+..+...|...++.+..++|+++..+|..+++.|++++.
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 122344455555544 56799999999999999999999999999999999999999999999998654
Q ss_pred --cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEE--EEecCC-CcHHHHHHHHHHhccCccc
Q 014801 331 --RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSA-SDSDILNQVQARFEVDIKE 405 (418)
Q Consensus 331 --~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~ 405 (418)
.+|++|.++++|+|++.+++||+++++||+..+.|++||+.|.|+...|. .++... -+..+++...+.....-..
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999875544 344433 3556666666665544433
Q ss_pred c
Q 014801 406 L 406 (418)
Q Consensus 406 ~ 406 (418)
+
T Consensus 705 i 705 (800)
T 3mwy_W 705 I 705 (800)
T ss_dssp -
T ss_pred H
Confidence 3
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-31 Score=261.98 Aligned_cols=334 Identities=16% Similarity=0.134 Sum_probs=221.7
Q ss_pred CCcHHHHHhHHhhh---------cCCcEEEEccCCCchhhHHHHHhhhccCCCC----CCeeEEEecCcHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAI---------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~---------~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~----~~~~~lii~P~~~l~~q~~~~~ 125 (418)
.|+|||.+++..+. .+.+++++.+||.|||+.++..+.......+ ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 78999999998874 3456899999999999887766655543322 22368999996 8999999999
Q ss_pred HHHhccCCCceEEEEEcCcchHHHH--HHhhc-----CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCC
Q 014801 126 ERFSTYLPDIKVAVFYGGVNIKIHK--DLLKN-----ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 198 (418)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~ 198 (418)
.++... .+.+..+.++....... ..+.. ...+|+|+|++.+.... ..+....+++||+||+|.+.+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~-- 207 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS-- 207 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT--
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh--
Confidence 998754 35566666654332211 11111 13589999999997643 2333457889999999999762
Q ss_pred CHHHHHHHHhhCCCCccEEEEEecCCccH----HH---------------HHHHhc--------C---------------
Q 014801 199 MRRDVQEIFKMTPHDKQVMMFSATLSKEI----RP---------------VCKKFM--------Q--------------- 236 (418)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~----~~---------------~~~~~~--------~--------------- 236 (418)
.......+... ...+.+++||||-.+. .. +...+. .
T Consensus 208 ~~~~~~al~~l--~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 208 DNQTYLALNSM--NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp CHHHHHHHHHH--CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHhc--ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 23333333332 2356899999984321 00 000000 0
Q ss_pred ------CCeEEEEc-CCcccccccceEEEEEe------------------------------------------------
Q 014801 237 ------DPMEIYVD-DEAKLTLHGLVQHYIKL------------------------------------------------ 261 (418)
Q Consensus 237 ------~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------------------------ 261 (418)
.+...... ......+.......+.+
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00000000 00000000001111110
Q ss_pred ------------------------------chhhHHHHHHHHHhh---cCCCeEEEEeCCchhHHHHHHHHHhCCCCeEE
Q 014801 262 ------------------------------SELEKNRKLNDLLDA---LDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 308 (418)
Q Consensus 262 ------------------------------~~~~~~~~l~~~~~~---~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~ 308 (418)
..+.+...+..++.. ..+.++|||++....+..+...|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 012233334444433 35689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHhhhcCCcc---EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEE--EEe
Q 014801 309 IHSGMSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFV 383 (418)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~g~~~---vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~--~~~ 383 (418)
+||+++..+|..+++.|++|+.. +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...|. .++
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998753 7889999999999999999999999999999999999999999876544 344
Q ss_pred cCC-CcHHHHHHHHHHhcc
Q 014801 384 SSA-SDSDILNQVQARFEV 401 (418)
Q Consensus 384 ~~~-~~~~~~~~~~~~~~~ 401 (418)
... -+..+++........
T Consensus 526 ~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHHHHHHHH
Confidence 433 244445544444333
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.2e-32 Score=232.47 Aligned_cols=201 Identities=37% Similarity=0.614 Sum_probs=177.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCc
Q 014801 38 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHT 114 (418)
Q Consensus 38 ~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~ 114 (418)
+|+++++++++.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999998877542 234589999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 115 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 115 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
++|+.|+.+.++++.. .+++..+.|+.........+..+ .+|+|+||+.+...+......+.+++++|+||||.+.
T Consensus 82 ~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999998863 46788888888776666555544 6999999999999988888888999999999999988
Q ss_pred cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEE
Q 014801 195 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 243 (418)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (418)
+ .++...+..+....+...+++++|||+++....+++.++.+|..+.+
T Consensus 158 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 S-MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp H-TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred c-cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 7 57888999999888888999999999999999999999999876643
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=235.06 Aligned_cols=205 Identities=26% Similarity=0.499 Sum_probs=176.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC----CCCCeeEEEe
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVL 111 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~----~~~~~~~lii 111 (418)
..+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.. ...+.+++|+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 456999999999999999999999999999999999999999999999999999999988876532 1234489999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEEech
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDEC 190 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDE~ 190 (418)
+|+++|+.|+.+.++++.... ++++..+.|+.........+. ..+|+|+||+++...+... ...+.+++++|+|||
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred eCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 999999999999999987665 788999999877666555553 3699999999999877654 466789999999999
Q ss_pred hhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEc
Q 014801 191 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 244 (418)
Q Consensus 191 h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
|.+.+ .++...+..+...++...+++++|||++.....+++.++.+|..+.+.
T Consensus 181 h~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 181 DRILD-MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHH-TTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhc-CCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99887 578889999999998899999999999999999999999998877554
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.7e-32 Score=276.99 Aligned_cols=311 Identities=14% Similarity=0.127 Sum_probs=206.9
Q ss_pred CCcHHHHHhHHhhhc--------------CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAIL--------------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~--------------~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999875 367999999999999997 45555555444445899999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC--CCCCCccEEEEechhhhccCCCCHHH
Q 014801 125 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRD 202 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDE~h~~~~~~~~~~~ 202 (418)
+..+.... +.++.+.......+.....+|+|+|+++|...+.... ..+..+.+||+||||+... ...
T Consensus 350 f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~~ 418 (1038)
T 2w00_A 350 YQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GEA 418 (1038)
T ss_dssp HHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HHH
T ss_pred HHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hHH
Confidence 98875321 1244444555555554457999999999998776432 2355788999999998653 223
Q ss_pred HHHHHhhCCCCccEEEEEecCCccHH----HHHHHhcCC-----------------CeEEEEcCCc-cc----------c
Q 014801 203 VQEIFKMTPHDKQVMMFSATLSKEIR----PVCKKFMQD-----------------PMEIYVDDEA-KL----------T 250 (418)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~-~~----------~ 250 (418)
...+...++ +.+++++||||..... .....+++. +..+...... .. .
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 445555554 4689999999974321 011122222 2221111000 00 0
Q ss_pred cccceEEEEEechhhHHHH-HHHHHhhc-----------CCCeEEEEeCCchhHHHHHHHHHhCC------------CCe
Q 014801 251 LHGLVQHYIKLSELEKNRK-LNDLLDAL-----------DFNQVVIFVKSVSRAAELNKLLVECN------------FPS 306 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~-----------~~~~~lif~~~~~~~~~~~~~L~~~~------------~~~ 306 (418)
......... .....+... +..++... .+.++||||++++.|..+++.|.+.+ .++
T Consensus 498 ~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 498 LSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 000000000 001112222 22232211 34689999999999999999997654 455
Q ss_pred EE-ecCC----------C----------CH-----------------------------HHHHHHHHhhhcCCccEEEEe
Q 014801 307 IC-IHSG----------M----------SQ-----------------------------EERLTRYKGFKEGNKRILVAT 336 (418)
Q Consensus 307 ~~-~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vlv~t 336 (418)
.+ ++++ + ++ ..|..+++.|++|+++|||+|
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvv 656 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVV 656 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEES
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEc
Confidence 44 4432 1 22 137788999999999999999
Q ss_pred cccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCc----eeEEEEec
Q 014801 337 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK----GLAITFVS 384 (418)
Q Consensus 337 ~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~----g~~~~~~~ 384 (418)
+++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999 667788999999999999999998753 55665554
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-32 Score=238.79 Aligned_cols=208 Identities=28% Similarity=0.513 Sum_probs=179.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC---------CCe
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---------GQV 106 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~---------~~~ 106 (418)
..+|+++++++.+.+.+...|+..|+++|.++++.++.++++++++|||+|||++++++++..+.... .++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 35699999999999999999999999999999999999999999999999999999999987764322 235
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
++||++|+++|+.|+.+.++++.... ++.+..+.|+.........+..+ .+|+|+||+++..++......+.+++++|
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMG-CHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSC-CSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCC-CCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 89999999999999999999988765 78888899988777666655544 69999999999999998888899999999
Q ss_pred EechhhhccCCCCHHHHHHHHhhC--CC--CccEEEEEecCCccHHHHHHHhcCCCeEEEEcCC
Q 014801 187 LDECDKMLESLDMRRDVQEIFKMT--PH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 246 (418)
Q Consensus 187 iDE~h~~~~~~~~~~~~~~~~~~~--~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (418)
+||||.+.+ .++...+..+.... +. ..|++++|||++.++..++..++.++..+.+...
T Consensus 180 iDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 180 LDEADRMLD-MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EETHHHHHH-TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EeCHHHHHh-CchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999987 57888888888743 33 5789999999999999999999999888766543
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.4e-30 Score=247.26 Aligned_cols=319 Identities=19% Similarity=0.201 Sum_probs=232.5
Q ss_pred CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCc
Q 014801 56 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 135 (418)
Q Consensus 56 ~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 135 (418)
|+ .+++.|.-..-.+.+|+ +..+.||+|||+++.++++-.+..+. .+.+++|+..|+.|-++++..+...+ |+
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-gl 145 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-GL 145 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh-CC
Confidence 44 67888888777776665 99999999999999999885555443 68999999999999999999998888 99
Q ss_pred eEEEEEcC--------------------------------------------------cchHHHHHHhhcCCCcEEEecc
Q 014801 136 KVAVFYGG--------------------------------------------------VNIKIHKDLLKNECPQIVVGTP 165 (418)
Q Consensus 136 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~i~v~T~ 165 (418)
++.++... .+...+...+. +||.++|.
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~---~DItYgTn 222 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL---CDVTYGTN 222 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH---SSEEEEEH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc---CCCEEccC
Confidence 99998872 22233333333 49999999
Q ss_pred HHHH-HHHhcC------CCCCCCccEEEEechhhhccC------------CCCHHH------------------------
Q 014801 166 GRIL-ALARDK------DLSLKNVRHFILDECDKMLES------------LDMRRD------------------------ 202 (418)
Q Consensus 166 ~~l~-~~~~~~------~~~~~~~~~iViDE~h~~~~~------------~~~~~~------------------------ 202 (418)
.-|- ..++.+ ..-...+.+.||||++.+.=+ ......
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8874 344432 223567899999999977510 000000
Q ss_pred -----------HHHHH------------------------h---------------------------------------
Q 014801 203 -----------VQEIF------------------------K--------------------------------------- 208 (418)
Q Consensus 203 -----------~~~~~------------------------~--------------------------------------- 208 (418)
+..++ .
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 00000 0
Q ss_pred ----------------------hCCCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhH
Q 014801 209 ----------------------MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 266 (418)
Q Consensus 209 ----------------------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (418)
++....++.+||||...+...+.+.+..+ .+.+ +..........+..+..+..++
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHHH
Confidence 00011179999999988766554444322 2223 3222222222223455677777
Q ss_pred HHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCC
Q 014801 267 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 344 (418)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d 344 (418)
...+...+... .+.++||||++.+.++.+++.|.+.|+++..+|+++...++..+..+++.| .|+|||+++++|+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 77777776653 568999999999999999999999999999999996666666666666666 59999999999999
Q ss_pred CC--------CCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcH
Q 014801 345 IE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 389 (418)
Q Consensus 345 ~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 389 (418)
++ +..+||.++.|.|...|.|++||+||.|.+|.++.|++..++.
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 98 5669999999999999999999999999999999999976644
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=236.84 Aligned_cols=209 Identities=26% Similarity=0.451 Sum_probs=172.5
Q ss_pred CCccCC----CCCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEe
Q 014801 37 SGFRDF----LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVL 111 (418)
Q Consensus 37 ~~~~~~----~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii 111 (418)
.+|+++ ++++.+.+.+...|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+... ..+.+++|+
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil 104 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALII 104 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEE
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 456665 899999999999999999999999999999999999999999999999999999877642 344589999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC--CCCCCCccEEEEec
Q 014801 112 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDE 189 (418)
Q Consensus 112 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDE 189 (418)
+|+++|+.|+.+.++++.... ++++..+.|+..............++|+|+||+++..++... ...+.+++++|+||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 105 SPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred eCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 999999999999999987765 777777766543332222223345799999999999988876 46788999999999
Q ss_pred hhhhccC--CCCHHHHHHHHhhC-CCCccEEEEEecCCccHHHHHHHhcCCCeEEEEcCC
Q 014801 190 CDKMLES--LDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 246 (418)
Q Consensus 190 ~h~~~~~--~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (418)
||.+.++ .++...+..++... ....+++++|||++.++..++..++.++..+.++..
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999763 46777777776654 456899999999999999999999999988877653
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=235.76 Aligned_cols=202 Identities=27% Similarity=0.476 Sum_probs=172.5
Q ss_pred cCCCccCCC--CCHHHHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC----CCCeeE
Q 014801 35 HSSGFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTA 108 (418)
Q Consensus 35 ~~~~~~~~~--l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~----~~~~~~ 108 (418)
....|++++ +++++++.+...|+..|+++|.++++.++.++++++++|||+|||++|+++++..+... ..+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 345677776 99999999999999999999999999999999999999999999999999998765431 134479
Q ss_pred EEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcC-CCCCCCccEEEE
Q 014801 109 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFIL 187 (418)
Q Consensus 109 lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iVi 187 (418)
+|++|+++|+.|+.+.++++.... +..+..+.|+.........+..+ .+|+|+||+++...+... ...+.++++||+
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 999999999999999999988766 78888999988877666666555 699999999999877664 467889999999
Q ss_pred echhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHhcCCCe
Q 014801 188 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 239 (418)
Q Consensus 188 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (418)
||||.+.+ .++...+..+...++..+|++++|||++..+..+++.++.++.
T Consensus 208 DEah~l~~-~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILD-VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHH-TTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhh-hhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999988 5899999999999999999999999999999999888876543
No 74
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=8.8e-29 Score=202.55 Aligned_cols=166 Identities=69% Similarity=1.078 Sum_probs=149.2
Q ss_pred ccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCcc
Q 014801 252 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 331 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 331 (418)
..+.+.+..++...+...+..++.....+++||||++.+.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677888888889999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 332 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 332 vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|+.|.+++++.+.++...++.+++.++.++++++..++
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 99999999999999999999999999999999999999999999999999999777788899999999999999999999
Q ss_pred cCCCCC
Q 014801 412 TSTYMP 417 (418)
Q Consensus 412 ~~~~~~ 417 (418)
.+.|.+
T Consensus 164 ~~~~~~ 169 (172)
T 1t5i_A 164 ISSYIE 169 (172)
T ss_dssp -----C
T ss_pred hhhccc
Confidence 988865
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.8e-26 Score=223.33 Aligned_cols=320 Identities=19% Similarity=0.183 Sum_probs=231.3
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
.|+ .|++.|..+++.+++|+ +..+.||+|||+++.++++.....+. ++++++||+.|+.|.++++..+...+ +
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-G 148 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-G 148 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT-T
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 488 99999999999999998 99999999999999999964443332 79999999999999999999999888 9
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHH-HHHHhcC------CCCCC---CccEEEEechhhhccCCCC-----
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLK---NVRHFILDECDKMLESLDM----- 199 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~---~~~~iViDE~h~~~~~~~~----- 199 (418)
+++..+.|+.+......... ++|+|+||..| ..+++.+ ...+. ++.++|+||+|.+..+...
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay~---~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAYL---ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp CCEEECCTTCCHHHHHHHHT---SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CeEEEEeCCCCHHHHHHHcC---CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 99999999988655444432 59999999999 6776654 24567 8999999999987621110
Q ss_pred ----------HHHHHHHHhhCC----------------------------------------------------------
Q 014801 200 ----------RRDVQEIFKMTP---------------------------------------------------------- 211 (418)
Q Consensus 200 ----------~~~~~~~~~~~~---------------------------------------------------------- 211 (418)
...+..+...+.
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 001111111110
Q ss_pred -----------------------------------------------------------------------CCccEEEEE
Q 014801 212 -----------------------------------------------------------------------HDKQVMMFS 220 (418)
Q Consensus 212 -----------------------------------------------------------------------~~~~~i~lS 220 (418)
...++.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 001788999
Q ss_pred ecCCccHHHHHHHhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHH-hhc-CCCeEEEEeCCchhHHHHHHH
Q 014801 221 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DAL-DFNQVVIFVKSVSRAAELNKL 298 (418)
Q Consensus 221 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~lif~~~~~~~~~~~~~ 298 (418)
+|...+...+.+.+..+ . +.+ +........-.+..+..+...+...+.+-+ ..+ .+.++||+|.+++..+.+++.
T Consensus 386 GTA~tE~~Ef~~iY~l~-V-v~I-PTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~ 462 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMD-V-VVV-PTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQM 462 (997)
T ss_dssp SSCGGGHHHHHHHHCCC-E-EEC-CCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCC-E-EEc-CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHH
Confidence 99987755544444333 2 233 333333333334455556666665544433 332 568999999999999999999
Q ss_pred HH----------------------------------------------------------------------------hC
Q 014801 299 LV----------------------------------------------------------------------------EC 302 (418)
Q Consensus 299 L~----------------------------------------------------------------------------~~ 302 (418)
|. +.
T Consensus 463 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (997)
T 2ipc_A 463 LKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQ 542 (997)
T ss_dssp HHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHc
Confidence 98 56
Q ss_pred CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCC-------------------C--------------
Q 014801 303 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV-------------------N-------------- 349 (418)
Q Consensus 303 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~-------------------~-------------- 349 (418)
|++..++++.....+...+-++=+.| .|-|||+++++|.|+.-- .
T Consensus 543 gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (997)
T 2ipc_A 543 GIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 (997)
T ss_dssp CCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTC
T ss_pred CCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 77888888775444433333333334 488999999999998532 1
Q ss_pred -----------------------------------------EEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCc
Q 014801 350 -----------------------------------------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 388 (418)
Q Consensus 350 -----------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 388 (418)
+||-...+.|..--.|..||+||.|.+|.+..|++-+|+
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 621 EEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 688888888999999999999999999999999996655
Q ss_pred H
Q 014801 389 S 389 (418)
Q Consensus 389 ~ 389 (418)
.
T Consensus 701 L 701 (997)
T 2ipc_A 701 L 701 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=8.4e-27 Score=189.32 Aligned_cols=156 Identities=36% Similarity=0.614 Sum_probs=145.8
Q ss_pred cccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCc
Q 014801 251 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 330 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 330 (418)
...+.+.+..++...+...+..++....++++||||++.+.++.+++.|.+.++.+..+||+++..+|..+++.|++|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34567788888889999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 331 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 331 ~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
+|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|++|.+++++. ..+...++.+++.++.+++.++
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT-AFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC-GGGHHHHHHHHHHHTSCCEECC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec-HHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999998 5677888999999988887654
No 77
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.1e-26 Score=189.22 Aligned_cols=158 Identities=41% Similarity=0.738 Sum_probs=141.4
Q ss_pred cceEEEEEechhh-HHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCcc
Q 014801 253 GLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 331 (418)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 331 (418)
.+.+.+..++... +...+..++....++++||||++.+.++.++..|.+.++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3456677777666 899999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcccc
Q 014801 332 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 332 vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
|||||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++. ..+...+..+++.++..++.++..+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE-TTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc-chHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999998 66777888999999999999987764
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.7e-25 Score=218.60 Aligned_cols=109 Identities=25% Similarity=0.374 Sum_probs=103.3
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecC-
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 356 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~- 356 (418)
.+.++||||++...++.+++.|.+.++.+..+|++++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhhhhcccccCCCCceeEEEEecCCC
Q 014801 357 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 357 ----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
|.|..+|+||+||+||.+ .|.++++++..+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 889999999999999985 899999988553
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=8.1e-27 Score=193.78 Aligned_cols=178 Identities=29% Similarity=0.490 Sum_probs=145.3
Q ss_pred HhcCCCeEEEEcCCcccccccceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCC
Q 014801 233 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 312 (418)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~ 312 (418)
.++.+|..+.+.... .....+.+.+..++...+...+.+++.... +++||||++.+.++.+++.|...++.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 455566665554433 345677788888888889999988887754 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHH
Q 014801 313 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 392 (418)
Q Consensus 313 ~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 392 (418)
+++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|++|.+++++...++....
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987788889
Q ss_pred HHHHHHhccCccccCccccc
Q 014801 393 NQVQARFEVDIKELPEQIDT 412 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~ 412 (418)
+.+++.++.....+|..+.+
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHccCcCCHHHHh
Confidence 99999998888888877543
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=187.62 Aligned_cols=159 Identities=30% Similarity=0.581 Sum_probs=142.2
Q ss_pred cccceEEEEEechhh-HHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCC
Q 014801 251 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 329 (418)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 329 (418)
...+.+.++.++... +...+..++.....+++||||++++.++.++..|.+.++.+..+||+++..+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456777888887655 8899999999888899999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecccccCCCCCCCCEEEEecCC------CChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCc
Q 014801 330 KRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 403 (418)
Q Consensus 330 ~~vlv~t~~l~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
++|||||+++++|+|+|++++||+++.| .+...|.||+||+||.|+.|.+++++. ..+...++.+++.++..+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE-VDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEEC-GGGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEc-cchHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 899999999999999999999999998 455778899999999998
Q ss_pred cccCccc
Q 014801 404 KELPEQI 410 (418)
Q Consensus 404 ~~~~~~~ 410 (418)
+.++..-
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 8877543
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=189.69 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=133.4
Q ss_pred ccccceEEEEEechhhHHHHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcC
Q 014801 250 TLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 328 (418)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 328 (418)
....+.+.+..++...+...+.+++... ++.++||||++.+.++.+++.|...++.+..+||+++..+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456788888888889999999999887 578999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCc
Q 014801 329 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 408 (418)
Q Consensus 329 ~~~vlv~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
+++|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|++|.+++++. ..+....+.+.+.++.....++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN-ERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC-GGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc-hhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999998 55666778888888888888887
Q ss_pred ccc
Q 014801 409 QID 411 (418)
Q Consensus 409 ~~~ 411 (418)
++.
T Consensus 175 ~l~ 177 (185)
T 2jgn_A 175 WLE 177 (185)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=3.3e-24 Score=210.78 Aligned_cols=143 Identities=22% Similarity=0.362 Sum_probs=118.0
Q ss_pred HHHHHHHhhc-CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCC
Q 014801 268 RKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 346 (418)
Q Consensus 268 ~~l~~~~~~~-~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~ 346 (418)
..+..+.... .+.++||||++...++.+++.|.+.++++..+|+++++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 433 ~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 433 DLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIP 512 (661)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCT
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccC
Confidence 3334443333 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecC-----CCChhhhhhhcccccCCCCceeEEEEecCCCcH--------HHHHHHHHHhccCccccCcccc
Q 014801 347 RVNIVINYDM-----PDSADTYLHRVGRAGRFGTKGLAITFVSSASDS--------DILNQVQARFEVDIKELPEQID 411 (418)
Q Consensus 347 ~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 411 (418)
++++||+++. |.|..+|+||+||+||. ..|.++++++..+.. ...+.++..++.....+|..+.
T Consensus 513 ~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~ 589 (661)
T 2d7d_A 513 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTIN 589 (661)
T ss_dssp TEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred CCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchh
Confidence 9999999997 89999999999999998 789999999865432 2223344455555554444443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=2.3e-25 Score=188.62 Aligned_cols=153 Identities=27% Similarity=0.492 Sum_probs=139.8
Q ss_pred eEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEE
Q 014801 255 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 334 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 334 (418)
....+..+...+...+..++....++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34556677788999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCc
Q 014801 335 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 408 (418)
Q Consensus 335 ~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (418)
||+++++|+|+|++++||+++.|+|...|.||+||+||.|++|.+++++. ..+...++.+++.++..++.++.
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYG-PRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEEC-GGGHHHHHHHHHHHSSCCEECCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEc-hhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999998 56777888899998888877654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.7e-24 Score=191.55 Aligned_cols=155 Identities=28% Similarity=0.491 Sum_probs=138.7
Q ss_pred ceEEEEEechhhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEE
Q 014801 254 LVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 333 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 333 (418)
+.+.++.++...+...+..++....++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+++||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 35667778888899999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccCcc
Q 014801 334 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 409 (418)
Q Consensus 334 v~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (418)
|||+++++|+|+|++++||+++.|+|...|.||+||+||.|++|.++.++. ..+...++.+++.++..++.++.+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~-~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG-PRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC-SSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC-hHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999998 567778888999988888776543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.2e-26 Score=185.55 Aligned_cols=152 Identities=38% Similarity=0.547 Sum_probs=135.5
Q ss_pred eEEEEEech-hhHHHHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEE
Q 014801 255 VQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 333 (418)
Q Consensus 255 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 333 (418)
.+.+..++. ..+...+..++....++++||||++.+.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 344555555 6677788888887777899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeEEEEecCCCcHHHHHHHHHHhccCccccC
Q 014801 334 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 407 (418)
Q Consensus 334 v~t~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
|||+++++|+|+|++++||+++.|+|...|.||+||+||.|+.|.+++++.. .+...++.+++.++..++...
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999984 566677888888777776544
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=5.1e-24 Score=182.00 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=116.1
Q ss_pred CCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCcHHHHHH-HHHHHHHHhc
Q 014801 55 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQ-ICHEFERFST 130 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~~~l~~q-~~~~~~~~~~ 130 (418)
.....|+++|.++++.+++++++++.+|||+|||+++++++...+... ....+++|++|+++|+.| +.+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 345589999999999999999999999999999999998887664321 123379999999999999 8888888865
Q ss_pred cCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCC------CCCCCccEEEEechhhhccCCCCHHHHH
Q 014801 131 YLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQ 204 (418)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~------~~~~~~~~iViDE~h~~~~~~~~~~~~~ 204 (418)
. ++++..+.|+............ ..+|+|+||+.+...+.... ..+.++++||+||||++.....+...+.
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred c--CceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 4 6788888877654433322222 25999999999998887643 5577899999999999876323333333
Q ss_pred HHHhhC-------------CCCccEEEEEec
Q 014801 205 EIFKMT-------------PHDKQVMMFSAT 222 (418)
Q Consensus 205 ~~~~~~-------------~~~~~~i~lSAT 222 (418)
.+.... ...++++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 156789999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.1e-22 Score=196.37 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEE--EecccccCCCCCC----CCEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV--ATDLVGRGIDIER----VNIV 351 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv--~t~~l~~G~d~~~----~~~v 351 (418)
.+++++||++|...++.+.+.|.. .. ...++.. .++..+++.|+++. .|++ +|+.+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457999999999999999988864 23 3444433 46778899998865 5777 7899999999997 7889
Q ss_pred EEecCCCC----h--------------------------hhhhhhcccccCCCCceeEEEEecC
Q 014801 352 INYDMPDS----A--------------------------DTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 352 i~~~~~~s----~--------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
|+++.|.. + ..+.|.+||+.|....-.++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99998851 1 2356999999998767667777773
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=6.2e-20 Score=177.78 Aligned_cols=313 Identities=15% Similarity=0.152 Sum_probs=193.8
Q ss_pred CCcHHHHHhHHhh----hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 59 HPSEVQHECIPQA----ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 59 ~l~~~Q~~~~~~~----~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
+++|+|.+++..+ ..++++++.+|||+|||++++++++.. ..+++|++||++|+.|+.+++..+.... +
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKR-N 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhc-C
Confidence 7899999977754 458899999999999999999999982 2389999999999999999998876555 6
Q ss_pred ceEEEEEcCcch---------------------------------HHHHHH-----------------hhcCCCcEEEec
Q 014801 135 IKVAVFYGGVNI---------------------------------KIHKDL-----------------LKNECPQIVVGT 164 (418)
Q Consensus 135 ~~~~~~~~~~~~---------------------------------~~~~~~-----------------~~~~~~~i~v~T 164 (418)
+++..+.|..++ ...... .....++|+|+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 777777664321 000000 011236999999
Q ss_pred cHHHHHHHhcCCCCC-CCccEEEEechhhhccC-------------------------------------C------C--
Q 014801 165 PGRILALARDKDLSL-KNVRHFILDECDKMLES-------------------------------------L------D-- 198 (418)
Q Consensus 165 ~~~l~~~~~~~~~~~-~~~~~iViDE~h~~~~~-------------------------------------~------~-- 198 (418)
+..+.....+....+ ....++||||||++.+. . .
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999987544333332 46778999999987640 0 0
Q ss_pred --------CHHHHH----------------------------HHH----------------------------hhCCCC-
Q 014801 199 --------MRRDVQ----------------------------EIF----------------------------KMTPHD- 213 (418)
Q Consensus 199 --------~~~~~~----------------------------~~~----------------------------~~~~~~- 213 (418)
+...+. .++ ..+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 000 011122
Q ss_pred ccEEEEEecCCccHHHHHHHhcCC-CeEE---EEcCCcccccccceEEEEEe--ch------hhHHHHHHHHHhh---cC
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQD-PMEI---YVDDEAKLTLHGLVQHYIKL--SE------LEKNRKLNDLLDA---LD 278 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~---~~ 278 (418)
..+|++|||+.+ ...+...+... +... ....... . ......++.. +. ......+.+.+.. ..
T Consensus 316 ~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~sp-f-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKR-V-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSC-C-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCc-C-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578999999986 33333433332 2211 0011111 1 1222222221 10 1112223222222 24
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEe--cccccCCCCC---C--CCEE
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIE---R--VNIV 351 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t--~~l~~G~d~~---~--~~~v 351 (418)
++.++||++|....+.+.+. .+.++..-..+++. ...++.|+.+.--||+++ +.+++|+|+| + ++.|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 57999999999999998863 34444433334454 445666743334799998 7999999999 3 7888
Q ss_pred EEecCCCC--------------------h----------hhhhhhcccccCCCCceeEEEEecCCC
Q 014801 352 INYDMPDS--------------------A----------DTYLHRVGRAGRFGTKGLAITFVSSAS 387 (418)
Q Consensus 352 i~~~~~~s--------------------~----------~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 387 (418)
|+.+.|.. . ..+.|.+||+.|..++..++++++..-
T Consensus 467 iI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 532 (551)
T 3crv_A 467 VIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRF 532 (551)
T ss_dssp EEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhc
Confidence 88776541 1 113599999999877777788887543
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=5.2e-22 Score=176.37 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=120.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
+|+++|.++++.++.+++.++++|||+|||.++++.+...+..+. .++||++|+++|+.||.++++++.... ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhcccc-cceEE
Confidence 799999999999999888999999999999998877766554222 279999999999999999999886443 56677
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.+.++..... ......+|+|+|++.+.+. ....+.++++||+||||++.+ ..+..+...+....++++
T Consensus 190 ~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 190 KIGGGASKDD----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp ECSTTCSSTT----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTCCEEEE
T ss_pred EEeCCCcchh----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcCCeEEE
Confidence 7766654321 1113469999999987542 223467889999999998764 367777777767899999
Q ss_pred EEecCCccH
Q 014801 219 FSATLSKEI 227 (418)
Q Consensus 219 lSAT~~~~~ 227 (418)
+|||++...
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998653
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=163.26 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC--CCeeEEEecCcHHHHHHHHHHHHHHhccCCC
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPD 134 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 134 (418)
...++++|.++++.+..|++++++||||+|||..+.++++....... ...++++++|+++++.|+.+.+........+
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 34679999999999999999999999999999877777766543222 2348999999999999998888765543223
Q ss_pred ceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCH-HHHHHHHhhCCCC
Q 014801 135 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHD 213 (418)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-~~~~~~~~~~~~~ 213 (418)
..+..-..... .......+|+|+||+.+.+.+.. .+.++++||+||+|...-..++. ..+..+.... .+
T Consensus 139 ~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 139 KSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp SSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred ceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 34433221111 01113358999999999998876 47899999999999742113444 3445555544 46
Q ss_pred ccEEEEEecCCccHHHHHHHhcCCC
Q 014801 214 KQVMMFSATLSKEIRPVCKKFMQDP 238 (418)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (418)
.|++++|||++.+. +.+.+...+
T Consensus 209 ~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 209 VRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp SEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CeEEEEecCCCHHH--HHHHcCCCC
Confidence 88999999999764 444444443
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=1.1e-19 Score=156.46 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=107.9
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce-E
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 137 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~-~ 137 (418)
.|+++|.+++..++.++++++++|||+|||.+++.++... +.++++++|+++|+.||.+.+.++ +++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeE
Confidence 7899999999999999899999999999999987776654 127999999999999999988874 666 7
Q ss_pred EEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEE
Q 014801 138 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 217 (418)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (418)
..+.|+... ..+|+|+|++.+...... ...++++||+||+|.+.+ ..+ ..+...+. ..+++
T Consensus 162 ~~~~g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~-~~~----~~i~~~~~-~~~~l 222 (237)
T 2fz4_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ESY----VQIAQMSI-APFRL 222 (237)
T ss_dssp EEESSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT-TTH----HHHHHTCC-CSEEE
T ss_pred EEEeCCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCC-hHH----HHHHHhcc-CCEEE
Confidence 777776542 359999999998765542 124689999999999875 232 33444443 56789
Q ss_pred EEEecCCcc
Q 014801 218 MFSATLSKE 226 (418)
Q Consensus 218 ~lSAT~~~~ 226 (418)
++|||+...
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=1.1e-18 Score=170.28 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=72.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEe--cccccCCCCCC--CCEEEEe
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIER--VNIVINY 354 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t--~~l~~G~d~~~--~~~vi~~ 354 (418)
++.++||++|....+.+.+.|.. .... ...+++..++..+++.|. ++-.||+++ +.+++|+|+|+ ++.||+.
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 46799999999999999888862 2222 444556678899999999 777899997 59999999997 7789988
Q ss_pred cCCCC-------------------h----------hhhhhhcccccCCCCceeEEEEecC
Q 014801 355 DMPDS-------------------A----------DTYLHRVGRAGRFGTKGLAITFVSS 385 (418)
Q Consensus 355 ~~~~s-------------------~----------~~~~Q~~GR~~R~~~~g~~~~~~~~ 385 (418)
+.|.- . ..+.|.+||+.|...+-.++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 87741 1 1236999999998777777777774
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=3.6e-18 Score=149.38 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=101.3
Q ss_pred chhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhC-CCCeEEecCCCCHHHHHHHHHhhhcC-Ccc-EEEEe
Q 014801 262 SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVAT 336 (418)
Q Consensus 262 ~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t 336 (418)
..+.+...+.+++... .+.++||||+....+..+...|.+. |+.+..+||+++..+|..+++.|++| +++ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456777788887776 6789999999999999999999874 99999999999999999999999998 777 67899
Q ss_pred cccccCCCCCCCCEEEEecCCCChhhhhhhcccccCCCCceeE--EEEecCCC-cHHHHHHHH
Q 014801 337 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSAS-DSDILNQVQ 396 (418)
Q Consensus 337 ~~l~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~~-~~~~~~~~~ 396 (418)
.++++|+|++.+++||++++|||+..+.|++||++|.|+.+.+ +.++.... +..+++.+.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~ 235 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 235 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765 44455332 334444443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.72 E-value=2.9e-08 Score=96.85 Aligned_cols=146 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhh--HHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTA--VFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~--~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+.|+.++..++.++.+++.|++|+|||+ .+++..+...... .+.++++++||..++.++.+.+....... ++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 68999999999999999999999999994 4445555443222 23479999999999999888776654433 22100
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.. ...... . ..-..++-.++... . +.........++++||||++.+. ...+..++...+...++++
T Consensus 229 ~~-~~~~~~--~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~-----~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 229 QK-KRIPED--A----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID-----LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CC-CSCSCC--C----BTTTSCC-------------CTTSCCSCSEEEECSGGGCB-----HHHHHHHHHTCCTTCEEEE
T ss_pred HH-hccchh--h----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC-----HHHHHHHHHhCCCCCEEEE
Confidence 00 000000 0 00011111222211 0 11111222378999999999553 3456777777888888888
Q ss_pred EEec
Q 014801 219 FSAT 222 (418)
Q Consensus 219 lSAT 222 (418)
+.-.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.53 E-value=1.9e-07 Score=92.12 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=54.5
Q ss_pred CCcHHHHHhHHhhhcCC-cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 59 HPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
.|++.|++|+..++..+ -.+|+||+|+|||.+..-.+...+..+. ++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~---~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL---KVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEcCchHHHHHHHHHHHhc
Confidence 68999999999988755 5799999999999886665555554433 8999999999999998877553
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.42 E-value=1.6e-06 Score=84.97 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
...+++.|.+|+..++.+...+|.||+|+|||.+....+...... .+.++++++||...++++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 457899999999998888889999999999998755443333321 1237999999999999988877653
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.38 E-value=2.2e-06 Score=82.81 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=78.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEE
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 138 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 138 (418)
.+++.|++++..+..++.++|.|++|+|||.+... ++..+... +.++++++||...+..+.+.. +....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~--------~~~a~ 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAESL--GLEVGLCAPTGKAARRLGEVT--------GRTAS 257 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHHT--TCCEEEEESSHHHHHHHHHHH--------TSCEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHhc--CCeEEEecCcHHHHHHhHhhh--------cccHH
Confidence 68999999999999999999999999999976433 33332222 237899999998777654432 22111
Q ss_pred EEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEE
Q 014801 139 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 218 (418)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (418)
.++. .+... ++ .+.........+++|||||++.+.. ..+..+....+...++++
T Consensus 258 Tih~---------ll~~~--------~~----~~~~~~~~~~~~dvlIIDEasml~~-----~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 258 TVHR---------LLGYG--------PQ----GFRHNHLEPAPYDLLIVDEVSMMGD-----ALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EHHH---------HTTEE--------TT----EESCSSSSCCSCSEEEECCGGGCCH-----HHHHHHHTTSCTTCEEEE
T ss_pred HHHH---------HHcCC--------cc----hhhhhhcccccCCEEEEcCccCCCH-----HHHHHHHHhCcCCCEEEE
Confidence 1110 00000 00 0011122334678999999997643 355666666666666666
Q ss_pred EEec
Q 014801 219 FSAT 222 (418)
Q Consensus 219 lSAT 222 (418)
+.-.
T Consensus 312 vGD~ 315 (574)
T 3e1s_A 312 VGDT 315 (574)
T ss_dssp EECT
T ss_pred Eecc
Confidence 5543
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.37 E-value=1.7e-05 Score=78.51 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=60.3
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCC-CCCeeEEEecCcHHHHHHHHHHHHHHhccC-CCc
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYL-PDI 135 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~ 135 (418)
..|++-|++++.. .+..++|.|+.|||||.+.+..+...+... ....+++++++|+..+.++.+.+.+..... .++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 4789999999973 367899999999999988776666555432 233479999999999999999988765321 244
Q ss_pred eEEEE
Q 014801 136 KVAVF 140 (418)
Q Consensus 136 ~~~~~ 140 (418)
.+..+
T Consensus 86 ~v~Tf 90 (647)
T 3lfu_A 86 WVGTF 90 (647)
T ss_dssp EEEEH
T ss_pred EEEcH
Confidence 44443
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.34 E-value=2.1e-06 Score=81.07 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=48.5
Q ss_pred CCCCCCcHHHHHhHHhhhcC----C-cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHH
Q 014801 55 SGFEHPSEVQHECIPQAILG----M-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 124 (418)
Q Consensus 55 ~~~~~l~~~Q~~~~~~~~~~----~-~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~ 124 (418)
..+..|++-|++++..++.. + .++|.|+.|+|||.+.. .++..+..... ..+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-TGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-CCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-ceEEEecCcHHHHHHHHhh
Confidence 46778999999999977542 3 89999999999997654 33333322222 2689999998877665443
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.2e-06 Score=84.83 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=54.4
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
+..|++.|.+|+..++.+...+|.||+|+|||.+....+...+.. .+.++++++||...++++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 346899999999999887779999999999998754433332221 1227999999999999998888764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.30 E-value=4.6e-06 Score=83.54 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=53.9
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
...+++.|.+|+..++.+...+|.||+|+|||.+..-.+..... .. +.++++++||...++++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~-~~-~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QG-NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHT-TC-SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34689999999999888888999999999999875443333332 12 237999999999999888777653
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.04 E-value=6.9e-05 Score=65.64 Aligned_cols=130 Identities=11% Similarity=-0.015 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHhhc--CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccc
Q 014801 263 ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 340 (418)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~ 340 (418)
.+.|...+..++... .+.+++||++.......+..+|...+++...+.|.....+++ -.++.+.+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 456777777777665 457999999999999999999998899998888874433211 1245556666677666
Q ss_pred cCCC-----CCCCCEEEEecCCCChhhh-hhhcccccCCC----CceeEEEEecCCCcHHHHHHHHH
Q 014801 341 RGID-----IERVNIVINYDMPDSADTY-LHRVGRAGRFG----TKGLAITFVSSASDSDILNQVQA 397 (418)
Q Consensus 341 ~G~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~~~~ 397 (418)
.|+| +..++.||.||..|++..- +|.+-|+.|.| ++-.++.++....-++..-.+-+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 6776 6679999999999999885 89888888863 34567777775555554444433
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.52 E-value=0.00089 Score=60.81 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.|+|+|+..+..+...+.+++..+-+.|||.+....++..+...+ +..+++++|+...+..+.+.++.+....|
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 789999999987655566899999999999876655554333322 33799999999999888888887765543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.25 E-value=0.0029 Score=61.53 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCC
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 133 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 133 (418)
.|+|+|+..+..+...+..++..+-|+|||.+....++..+...+ +.+++++.|+...+..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 589999999987755677999999999999876655444443333 33799999999999998888887776554
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00085 Score=54.29 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
++.+++.||+|+|||..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999997543
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.18 E-value=0.00074 Score=54.84 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
++-.++.||+|+|||..++-.+.+....+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeecc
Confidence 455789999999999875444444333322 788888874
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.16 E-value=0.0015 Score=60.10 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=62.3
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 155 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (418)
-.++.|+.|+|||..+.- .+. . .+.++++|+++++.+|.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~~---~----~~~lVlTpT~~aa~~l~~kl~~~-----~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RVN---F----EEDLILVPGRQAAEMIRRRANAS-----GII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HCC---T----TTCEEEESCHHHHHHHHHHHTTT-----SCC-------------------
T ss_pred EEEEEcCCCCCHHHHHHH-Hhc---c----CCeEEEeCCHHHHHHHHHHhhhc-----Ccc-------------------
Confidence 368999999999975432 222 1 15699999999999887766432 100
Q ss_pred CCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 156 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 156 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
.....-+.|.+.++- +......-..+++||||+-.+.. ..+..+....+. .+++++.-+
T Consensus 211 ~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~~~-----~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLMLHT-----GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGSCH-----HHHHHHHHHTTC-SEEEEEECT
T ss_pred ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccCCH-----HHHHHHHHhCCC-CEEEEecCc
Confidence 001334677776653 22222223478999999986532 233333333333 555665544
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.15 E-value=0.00038 Score=69.07 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=60.3
Q ss_pred CCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhccC--CCc
Q 014801 59 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL--PDI 135 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~--~~~ 135 (418)
.|++-|++++.. .+..++|.|+.|||||.+..-.+...+.. +....++++++.|+..+.++.+.+.+..... .++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 578999999975 36789999999999998876656555433 2233479999999999999999988764321 145
Q ss_pred eEEEEEc
Q 014801 136 KVAVFYG 142 (418)
Q Consensus 136 ~~~~~~~ 142 (418)
.+..+++
T Consensus 80 ~v~Tfhs 86 (673)
T 1uaa_A 80 MISTFHT 86 (673)
T ss_dssp EEEEHHH
T ss_pred EEEeHHH
Confidence 5655443
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.99 E-value=0.002 Score=57.82 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=26.4
Q ss_pred CcHHHHHhHHhhhc----CC---cEEEEccCCCchhhHHHHHh
Q 014801 60 PSEVQHECIPQAIL----GM---DVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 60 l~~~Q~~~~~~~~~----~~---~~~v~~~tGsGKT~~~~l~~ 95 (418)
++|||.+++..+.. ++ ..++.||.|+|||..+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 46888888766553 32 38999999999997655433
No 110
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.92 E-value=0.0015 Score=65.24 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCcHHHHHHHHHHHHHHhcc-CCCc
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY-LPDI 135 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~ 135 (418)
..|++-|++++.. .+..++|.|+.|||||.+....+...+.. +....++|+++.|+..+.++.+++.+.... ..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4789999999875 35789999999999998877666665543 223447999999999999999888876432 1245
Q ss_pred eEEEEE
Q 014801 136 KVAVFY 141 (418)
Q Consensus 136 ~~~~~~ 141 (418)
.+..++
T Consensus 88 ~v~Tfh 93 (724)
T 1pjr_A 88 WISTFH 93 (724)
T ss_dssp EEEEHH
T ss_pred EEeeHH
Confidence 555543
No 111
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.80 E-value=0.0019 Score=68.32 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=56.4
Q ss_pred CCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHHHHHhhhccCCCC---CCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 58 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 58 ~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
..+++-|++++..- +++++|.|+.|||||.+.+--++..+.... ...+++++++|++.+.++.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 37899999998753 789999999999999987776777665533 3448999999999999998888764
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.78 E-value=0.0029 Score=51.49 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
++-.++.||+|+|||..++-.+.+....+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 445788999999999876554444443333 789998874
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.64 E-value=0.0062 Score=59.02 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCcHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCce
Q 014801 59 HPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 136 (418)
Q Consensus 59 ~l~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 136 (418)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+..... .+++.+|+..-+... ..+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~------~~~vtAP~~~a~~~l----~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG------RAIVTAPAKASTDVL----AQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS------CEEEECSSCCSCHHH----HHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh------CcEEECCCHHHHHHH----HHHhhC-----
Confidence 678999999998887 445799999999999765555554432 468899998765533 233211
Q ss_pred EEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccE
Q 014801 137 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 216 (418)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (418)
.+-+..|+.+.. .....+++|||||=.+. ...+..+.... ..
T Consensus 240 ----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp-----~pll~~ll~~~----~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP-----APLLHQLVSRF----PR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC-----HHHHHHHHTTS----SE
T ss_pred ----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC-----HHHHHHHHhhC----Ce
Confidence 133345665432 22357899999997543 35566666533 25
Q ss_pred EEEEecCC
Q 014801 217 MMFSATLS 224 (418)
Q Consensus 217 i~lSAT~~ 224 (418)
+++|.|..
T Consensus 282 v~~~tTv~ 289 (671)
T 2zpa_A 282 TLLTTTVQ 289 (671)
T ss_dssp EEEEEEBS
T ss_pred EEEEecCC
Confidence 77888864
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.0012 Score=55.18 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 153 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (418)
|.-.++.|++|+|||..++-.+.+....+. +++++.|...-. - ........ ++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r--~---~~~i~srl-G~~~---------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR--S---IRNIQSRT-GTSL---------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG--G---CSSCCCCC-CCSS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch--H---HHHHHHhc-CCCc----------------
Confidence 445788999999999876555545444333 678887754210 0 00111111 1100
Q ss_pred hcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhc
Q 014801 154 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 194 (418)
Q Consensus 154 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~ 194 (418)
..+-+.+.+.+...+.... .-..+++|||||++.+.
T Consensus 67 ----~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233455666666655432 23457899999999754
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.012 Score=48.98 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
....+||+||+|.+.. .....+..+.........+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998754 234455556665555555555543
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.58 E-value=0.0049 Score=50.68 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
|+=.++.|++|+|||..++-.+.+....+. +++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 334578999999999876655555554443 7899998764
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.011 Score=52.19 Aligned_cols=45 Identities=2% Similarity=0.049 Sum_probs=25.7
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCcc
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 226 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~ 226 (418)
..-+|++||+|.+.. .+....+.++........-+|++++|+...
T Consensus 132 ~~~ii~lDE~d~l~~-q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 132 RKTLILIQNPENLLS-EKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp CEEEEEEECCSSSCC-THHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred CceEEEEecHHHhhc-chHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 456799999999873 222222222222223334577788887543
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0089 Score=53.30 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999997643
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.0046 Score=51.39 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
|+-.++.|++|+|||..++-.+.+....+. +++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecC
Confidence 445688999999999876666666555443 788888875
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.003 Score=53.51 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3577999999999999754
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0022 Score=50.00 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+..+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999753
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.01 E-value=0.022 Score=43.96 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34678999999999999764
No 123
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.017 Score=52.43 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=34.5
Q ss_pred cccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 31 YVGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
....+..+|++.+=-++.++.+... .+..|.-++.-. +...+.+++.||+|+|||+.+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4455677899987556666665543 011111222211 122467999999999999754
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.01 E-value=0.026 Score=52.05 Aligned_cols=55 Identities=13% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCccEEEEechhhhc--cCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh
Q 014801 180 KNVRHFILDECDKML--ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 180 ~~~~~iViDE~h~~~--~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
..++++|+|++.... ........+..+........-++.++|+...+....+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 467899999997654 3333445555555555555667788888765555555444
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.00 E-value=0.022 Score=53.09 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
...+++.||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.97 E-value=0.019 Score=51.11 Aligned_cols=60 Identities=10% Similarity=-0.003 Sum_probs=34.4
Q ss_pred CcccccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHH-hHHh-hhcCCcEEEEccCCCchhhHHH
Q 014801 30 GYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHE-CIPQ-AILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~-~~~~-~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
.....+...|+++.-.+...+.+... +. .|.... .+.. ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~-i~--~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEA-VI--LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHH-TH--HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHH-HH--HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34445566788887777777766643 10 111110 0000 1113569999999999997653
No 127
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0076 Score=55.58 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=35.6
Q ss_pred ccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+..+|++.+--++..+.+... .+..|.-++...+ ...+.+++.||+|+|||+.+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 345667899988777777776643 1112222222211 12467999999999999754
No 128
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.71 E-value=0.0083 Score=49.24 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
|.=.++.|+.|+|||...+-.+.+....+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 44468899999999976554444443333 27899988764
No 129
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.038 Score=51.06 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=34.9
Q ss_pred ccccCCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHhHHhh--hcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQA--ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q-~~~~~~~--~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+.-+|++.+=-++..+.+... + . .|.. -+.+..+ ...+.+++.||+|+|||+.+
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~-V-~-~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREV-V-E-LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHH-T-H-HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred cCCCCCCHHHhccHHHHHHHHHHH-H-H-HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 345667899987777777776643 1 1 1111 1222221 23577999999999999754
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.64 E-value=0.055 Score=46.72 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997653
No 131
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.02 Score=52.74 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=31.9
Q ss_pred ccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+..+|++.+=-+...+.+... .+..+.-++... +...+.+++.||+|+|||+.+
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 344556788876555555555432 011111122111 122467999999999999764
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.48 E-value=0.061 Score=47.80 Aligned_cols=39 Identities=10% Similarity=0.291 Sum_probs=23.9
Q ss_pred CCccEEEEechhhhc-cCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~-~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++++||+|.+. . .....+..+........++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~--~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLA--ESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGH--HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 367889999999886 3 23344555555444445555543
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.46 E-value=0.022 Score=50.28 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 134
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.023 Score=52.44 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=32.6
Q ss_pred ccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+..+|++.+=-++.++.+... .+..|.-++.-. +...+.+++.||+|+|||+.+
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345567799987555555555432 011111111111 122467999999999999764
No 135
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.37 E-value=0.037 Score=48.70 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=25.8
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++|+||+|.+.. .....+.+.++.-+....+|+.+
T Consensus 81 ~~~kvviIdead~lt~--~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ--QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCH--HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCH--HHHHHHHHHHhCCCCCeEEEEEE
Confidence 4678999999998864 33445666666555555555554
No 136
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.049 Score=49.77 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=32.6
Q ss_pred ccccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 32 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+..+|++.+=-++..+.+... .+..+.-++...+ ...+.+++.||+|+|||+.+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 344567899986445555544432 1112222222211 12467999999999999754
No 137
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.13 E-value=0.057 Score=53.97 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEEE
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 352 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~vi 352 (418)
.+.+++|.+|++..+.+..+.+.+ .++.+..++|+++..++...++.+.+|+.+|+|+|. .+...+++.++..||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 357899999999999888777654 378999999999999999999999999999999995 456677888888888
Q ss_pred EecC
Q 014801 353 NYDM 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.-..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 6443
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.24 Score=44.51 Aligned_cols=43 Identities=12% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
.+.+++|+||+|.+.. .....+...+........+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L~~--~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTK--DAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCH--HHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCH--HHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4677999999998543 334556666666555665666665543
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.053 Score=48.13 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=25.5
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
.+..++|+||+|.+.. .....+.......+....+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998754 334455566665555565555443
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.00 E-value=0.066 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.95 E-value=0.37 Score=40.18 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=22.8
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
...+||+||+|.+.. .....+...+........+++.|.
T Consensus 126 ~~~vlviDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH--HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH--HHHHHHHHHHhcCCCceEEEEEeC
Confidence 457899999998653 233444455554444454454443
No 142
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.86 E-value=0.3 Score=43.49 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999764
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.80 E-value=0.048 Score=49.78 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=21.4
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
.+++.||+|+|||..+- .+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc-CeeEEEEe
Confidence 69999999999997643 3334433221 12455554
No 144
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.036 Score=49.87 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=25.4
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEe
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 221 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (418)
....+|++||+|.+.. .....+...+........+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~--~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA--DAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCH--HHHHHHHHHHHhcCCCceEEEEeC
Confidence 3567899999998764 233455566665555555665543
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.62 E-value=0.19 Score=46.37 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=21.0
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEec
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 112 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~ 112 (418)
-++++|++|+|||+++.-.+...... + . +++++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~-G-~-kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR-G-Y-KVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-T-C-CEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC-C-C-eEEEEe
Confidence 37889999999998755433333322 2 2 555554
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.61 E-value=0.076 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
...+++.||+|+|||..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999997643
No 147
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.57 E-value=0.057 Score=43.69 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH-HHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 152 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (418)
...+++..++|.|||.+++-.+++.+..+. +++++-=.+.-...- .+.++++ ++.+...-.+.........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH-----GVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG-----TCEEEECCTTCCCCGGGHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC-----CcEEEEcccccccCCCCcH
Confidence 456899999999999999888888887665 677773222100000 0112222 2333222111110000000
Q ss_pred hhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEechhhhccC-CCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHH
Q 014801 153 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 231 (418)
Q Consensus 153 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (418)
. +..- .-+.+....+. +.-..+++||+||+-..... .--...+..++...+....+|+.+--.++++...+
T Consensus 100 ~-----~~~~-a~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 100 A-----DTAA-CMAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp H-----HHHH-HHHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred H-----HHHH-HHHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 0 0000 01112111111 22357899999999754321 22234566667766666656555555555544443
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.47 E-value=0.1 Score=47.06 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.+++.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997653
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.053 Score=48.03 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=23.8
Q ss_pred CccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 181 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 181 ~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+..+||+||+|.+.. .....+.......+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--GAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCH--HHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCH--HHHHHHHHHHhccCCCceEEEEe
Confidence 467899999998754 22334455555555555555555
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.99 E-value=0.2 Score=45.37 Aligned_cols=39 Identities=8% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
....++||||+|.+.. .....+...+...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH--HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH--HHHHHHHHHHhcCCCceEEEEEe
Confidence 4567899999998754 23344555555544445444444
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.78 E-value=0.11 Score=47.30 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.70 E-value=0.18 Score=46.51 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=64.1
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecc-cc---cCCCCCCCC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VG---RGIDIERVN 349 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-l~---~G~d~~~~~ 349 (418)
..+.++||.+|+++.+.++++.+.+ .+..+..++|+.+..++...++.+.+|+.+|+|+|+- +. .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 5779999999999988888888899999999999953 31 124555677
Q ss_pred EEEEec
Q 014801 350 IVINYD 355 (418)
Q Consensus 350 ~vi~~~ 355 (418)
.+|.-.
T Consensus 142 ~iViDE 147 (414)
T 3oiy_A 142 FVFVDD 147 (414)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 777544
No 153
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.66 E-value=0.32 Score=43.41 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=26.0
Q ss_pred CCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 180 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
...+++|+||+|.+.. .....+....+..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998764 33445666666666566555544
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.53 E-value=0.2 Score=45.74 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.44 E-value=0.28 Score=43.12 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 156
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.16 E-value=0.24 Score=46.62 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
...+++.||+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999998653
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.94 E-value=0.12 Score=48.00 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.+++++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.83 E-value=0.22 Score=46.54 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=24.8
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
.|.-++|.|++|+|||..++-.+.......+ .+++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 3566899999999999765544443332211 15777764
No 159
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.77 E-value=0.38 Score=38.14 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=54.4
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||.++++..+..+++.+... ++.+..++|+.+...+... +.++..+|+|+|. . -..++++..++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~-----~~~Gid~~~~~ 104 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-V-----CARGIDVKQVT 104 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-S-----CCTTTCCTTEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-c-----hhcCCCcccCC
Confidence 8999999999999888877664 7889999999876655544 4557789999992 1 13457788888
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
+||.-+
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887533
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.60 E-value=0.17 Score=47.31 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+++.||+|+|||+.+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999754
No 161
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.57 E-value=0.73 Score=35.97 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=62.2
Q ss_pred CchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEE
Q 014801 85 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIV 161 (418)
Q Consensus 85 sGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 161 (418)
..|... +..++.... ..++|+.++++..+..+.+.+... ++.+..++|+.+...+... +.++...|+
T Consensus 20 ~~K~~~-L~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vl 89 (163)
T 2hjv_A 20 ENKFSL-LKDVLMTEN----PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 89 (163)
T ss_dssp GGHHHH-HHHHHHHHC----CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHHH-HHHHHHhcC----CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 456533 344444332 227999999999999988888765 7889999998776655443 455777999
Q ss_pred EeccHHHHHHHhcCCCCCCCccEEEEech
Q 014801 162 VGTPGRILALARDKDLSLKNVRHFILDEC 190 (418)
Q Consensus 162 v~T~~~l~~~~~~~~~~~~~~~~iViDE~ 190 (418)
|+| +.+ ..++++..++++|.-+.
T Consensus 90 v~T-~~~-----~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 90 VAT-DVA-----ARGIDIENISLVINYDL 112 (163)
T ss_dssp EEC-GGG-----TTTCCCSCCSEEEESSC
T ss_pred EEC-Chh-----hcCCchhcCCEEEEeCC
Confidence 999 222 34677888888876443
No 162
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.28 E-value=0.93 Score=36.52 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=54.6
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||+++++.-+..+.+.++.. ++.+..++|+.+...+... +.++...|+|+| +.+ ...+++..++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~-----~~Gldi~~v~ 124 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVA-----SKGLDFPAIQ 124 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHH-----HTTCCCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-Cch-----hcCCCcccCC
Confidence 7999999999999998888775 7889999998876655443 445677999999 222 2356788888
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 877633
No 163
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.20 E-value=0.26 Score=45.86 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
|.-++|.|++|+|||..++-.+.......+ .+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC
Confidence 556899999999999765544444433221 25777664
No 164
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.94 E-value=0.55 Score=36.77 Aligned_cols=88 Identities=13% Similarity=0.284 Sum_probs=61.0
Q ss_pred hhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEe
Q 014801 87 KTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVG 163 (418)
Q Consensus 87 KT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~ 163 (418)
|... +..++.... ..++|+.++++.-+..+++.++.. ++.+..++|+.+...+... +.++...|+|+
T Consensus 17 K~~~-l~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 17 KYEC-LTDLYDSIS----VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp HHHH-HHHHHHHTT----CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHH-HHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 6543 444554432 227999999999999888887764 7889999998876655443 45577799999
Q ss_pred ccHHHHHHHhcCCCCCCCccEEEEech
Q 014801 164 TPGRILALARDKDLSLKNVRHFILDEC 190 (418)
Q Consensus 164 T~~~l~~~~~~~~~~~~~~~~iViDE~ 190 (418)
|. .+ ..++++..++++|.-+.
T Consensus 87 T~-~~-----~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 87 TD-LL-----ARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EG-GG-----TTTCCCCSCSEEEESSC
T ss_pred cC-hh-----hcCCCcccCCEEEEeCC
Confidence 92 22 34567788888776443
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.90 E-value=0.7 Score=43.29 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecccccCCCCCC
Q 014801 268 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 347 (418)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~l~~G~d~~~ 347 (418)
..+...++. .+.++++.+.+...++.+.+.|.+.++.+..... +..+..| .+.|+...+..|+.+|.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~----------~~~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMR----------LDEASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC----------GGGCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCc----------hhhcCCC--cEEEEEcccccCcccCC
Confidence 344444433 2478999999999999999999988877654432 1123334 46777888999999998
Q ss_pred CCEEEEec
Q 014801 348 VNIVINYD 355 (418)
Q Consensus 348 ~~~vi~~~ 355 (418)
...+++..
T Consensus 439 ~klaVITE 446 (483)
T 3hjh_A 439 RNLALICE 446 (483)
T ss_dssp TTEEEEEH
T ss_pred CCEEEEEc
Confidence 88877643
No 166
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.63 E-value=0.13 Score=39.29 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..+.++++.|++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 44678999999999999643
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.61 E-value=0.11 Score=46.28 Aligned_cols=50 Identities=24% Similarity=0.182 Sum_probs=29.7
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
..|.-++|.|++|+|||..++-.+...... +.+++|+..-- -..|+..++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSS-CHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCC-CHHHHHHHH
Confidence 345668999999999997655444443332 22677776432 234444443
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.59 E-value=6.8 Score=34.57 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=23.8
Q ss_pred ccEEEEechhhhcc--CCCCHHHHHHHHhhCCCCccEEEEEec
Q 014801 182 VRHFILDECDKMLE--SLDMRRDVQEIFKMTPHDKQVMMFSAT 222 (418)
Q Consensus 182 ~~~iViDE~h~~~~--~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (418)
.-+||+||+|.+.. ...+...+..+..... ... +.++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcC
Confidence 44799999999864 2456666666655432 333 444444
No 169
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.55 E-value=0.48 Score=37.45 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=62.2
Q ss_pred CchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEE
Q 014801 85 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIV 161 (418)
Q Consensus 85 sGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 161 (418)
..|... +..++.... ..++|+.++++..+..+++.+... ++.+..++|+.+...+... +.++...|+
T Consensus 16 ~~K~~~-L~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 85 (172)
T 1t5i_A 16 NEKNRK-LFDLLDVLE----FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 85 (172)
T ss_dssp GGHHHH-HHHHHHHSC----CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHHH-HHHHHHhCC----CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEE
Confidence 456543 444444432 227999999999999888888765 7889999998876655443 455778999
Q ss_pred EeccHHHHHHHhcCCCCCCCccEEEEech
Q 014801 162 VGTPGRILALARDKDLSLKNVRHFILDEC 190 (418)
Q Consensus 162 v~T~~~l~~~~~~~~~~~~~~~~iViDE~ 190 (418)
|+|. .+ ..++++..+++||.-+.
T Consensus 86 vaT~-~~-----~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 86 VATN-LF-----GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp EESS-CC-----STTCCGGGCSEEEESSC
T ss_pred EECC-ch-----hcCcchhhCCEEEEECC
Confidence 9993 22 34567778888876443
No 170
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.40 E-value=0.68 Score=48.65 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCCCCCCCEE
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIV 351 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d~~~~~~v 351 (418)
..+.+++|.+++...+.+..+.+.+ .+..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++..+
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3557999999999999988887764 356788899999999999999999999999999994 56666777777777
Q ss_pred EE
Q 014801 352 IN 353 (418)
Q Consensus 352 i~ 353 (418)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.38 E-value=0.33 Score=39.50 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 172
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.34 E-value=0.57 Score=38.60 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred CeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----ccCCCCCCC
Q 014801 280 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIERV 348 (418)
Q Consensus 280 ~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~G~d~~~~ 348 (418)
.++||.+++++.+.++.+.+.+. +..+..++|+.+....... +.++..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887764 6788889998886655433 4556778999994 22 234567778
Q ss_pred CEEEEec
Q 014801 349 NIVINYD 355 (418)
Q Consensus 349 ~~vi~~~ 355 (418)
+.+|.-.
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8877644
No 173
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.33 E-value=0.67 Score=37.14 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHhhcCCCcE
Q 014801 84 GMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQI 160 (418)
Q Consensus 84 GsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i 160 (418)
.+.|... +..++..... ..++||.++++.-+..+++.++.. ++.+..++|+.+...+. ..+.++...|
T Consensus 29 ~~~K~~~-L~~ll~~~~~---~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGK---DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHHHH-HHHHHHHC-C---CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHHHH-HHHHHHhcCC---CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 4567643 4455554322 237999999999999888887764 78888999886654433 3345566799
Q ss_pred EEeccHHHHHHHhcCCCCCCCccEEEEe
Q 014801 161 VVGTPGRILALARDKDLSLKNVRHFILD 188 (418)
Q Consensus 161 ~v~T~~~l~~~~~~~~~~~~~~~~iViD 188 (418)
+|+| +.+ ..++++..+++||.=
T Consensus 100 LvaT-~~~-----~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 100 LVAT-AVA-----ARGLDISNVKHVINF 121 (185)
T ss_dssp EEEE-C-----------CCCSBSEEEES
T ss_pred EEEc-Chh-----hcCCCcccCCEEEEe
Confidence 9999 332 234677788877763
No 174
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.05 E-value=0.51 Score=47.11 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=35.9
Q ss_pred cccccCCCccCCCCCHHHHHHHHHC-CCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 31 YVGIHSSGFRDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
....+...|++.+.-++..+.+... .+...+|.+-.-+ -+...+.+++.||+|+|||+.+
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 3445567788888888888888754 1111111111000 0112467999999999999754
No 175
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.65 E-value=1.3 Score=36.41 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=54.3
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||.++++.-++.+.+.+... ++.+..++|+.+...+... +.++..+|+|+|. . -...+++..++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-~-----~~~Gidi~~v~ 101 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-V-----AARGLDIPQVD 101 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-T-----TTCSSSCCCBS
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-h-----hhcCCCCccCc
Confidence 7999999999999988888775 7889999999876665544 4567779999992 1 23457788888
Q ss_pred EEEE
Q 014801 184 HFIL 187 (418)
Q Consensus 184 ~iVi 187 (418)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 176
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=90.51 E-value=1.2 Score=31.15 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=44.7
Q ss_pred EEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccE
Q 014801 282 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 332 (418)
Q Consensus 282 ~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 332 (418)
.++|..+.+...++.+.+++.|..+..++++.+...|.+.++.|.+..+++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 578889999999999999999999999999999999999999998755443
No 177
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.13 E-value=0.56 Score=49.00 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=64.0
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHh---CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cccc---CCCCCCCC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGR---GIDIERVN 349 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~---G~d~~~~~ 349 (418)
..+.++||.+|+++.+.++.+.+.+ .++.+..++|+.+..++...++.+.+|+.+|+|+|+ .+.. -+++.++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3557899999999999999999988 467899999999988888888889999999999995 3311 14456788
Q ss_pred EEEEec
Q 014801 350 IVINYD 355 (418)
Q Consensus 350 ~vi~~~ 355 (418)
++|.-.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 887644
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.06 E-value=2.3 Score=35.75 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=53.9
Q ss_pred cCCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc------ccCCCC
Q 014801 277 LDFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV------GRGIDI 345 (418)
Q Consensus 277 ~~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l------~~G~d~ 345 (418)
..+.++||.+++++.+.++.+.+.+. +..+..++|+.+...+...+ .+..+|+|+|. .+ ..++++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 34567999999999999888777654 78888899988766544332 24678999994 22 135677
Q ss_pred CCCCEEEEec
Q 014801 346 ERVNIVINYD 355 (418)
Q Consensus 346 ~~~~~vi~~~ 355 (418)
..++.+|.-.
T Consensus 185 ~~~~~lViDE 194 (249)
T 3ber_A 185 RALKYLVMDE 194 (249)
T ss_dssp TTCCEEEECS
T ss_pred cccCEEEEcC
Confidence 7788877543
No 179
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.98 E-value=0.36 Score=39.65 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=27.9
Q ss_pred CCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 57 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 57 ~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
+..-+.-|..++..+..|.-+.+.||.|+|||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33345567788888888999999999999999643
No 180
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.66 E-value=1.9 Score=40.91 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 337 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 337 (418)
.+++||.+|.++.+....+.|.+.+..+..++++.+..++..++..+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999998888889999999999995
No 181
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.34 E-value=2.4 Score=40.68 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=58.6
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
.++||.|+++.-+..+++.+...... ++.+..++|+.....+... +.++..+|+|+|.- -...+++..+
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 411 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 411 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCCcccC
Confidence 38999999999999999988876532 7889999998876655444 44577799999941 2356788889
Q ss_pred cEEEEech
Q 014801 183 RHFILDEC 190 (418)
Q Consensus 183 ~~iViDE~ 190 (418)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 98886554
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.23 E-value=0.47 Score=47.35 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
+.+++.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999754
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.90 E-value=0.42 Score=43.94 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=24.5
Q ss_pred cHHHHHhHHhhhc--CCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 61 SEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 61 ~~~Q~~~~~~~~~--~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.+-+..++..++. +.-++|.||||||||.. +-.++..+.
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 3445555555543 44589999999999975 333444444
No 184
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.87 E-value=6.2 Score=38.65 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=60.0
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||+++++..+..+.+.+... ++++..++|+.....+... +..+..+|+|+|- +-..++++..++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v~ 515 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEVS 515 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCCC
Confidence 8999999999999888888775 7888888988776655554 4457789999984 124567888999
Q ss_pred EEEEechhhhc
Q 014801 184 HFILDECDKML 194 (418)
Q Consensus 184 ~iViDE~h~~~ 194 (418)
++|+-+++.+.
T Consensus 516 lVi~~d~d~~G 526 (661)
T 2d7d_A 516 LVAILDADKEG 526 (661)
T ss_dssp EEEETTTTCCT
T ss_pred EEEEeCccccc
Confidence 99999987543
No 185
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.71 E-value=1.5 Score=36.33 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=51.6
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecc-c-----ccCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIE 346 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-l-----~~G~d~~ 346 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++|+.+...+...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999998888764 56788889988876654433 25789999952 2 1345566
Q ss_pred CCCEEEE
Q 014801 347 RVNIVIN 353 (418)
Q Consensus 347 ~~~~vi~ 353 (418)
+++.+|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777765
No 186
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.67 E-value=0.63 Score=44.03 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=24.5
Q ss_pred cHHHHHhHHh-hhcCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 61 SEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 61 ~~~Q~~~~~~-~~~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.+.+.+.+.. +..+..+++.||||||||+.. -.++..+
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 3444444443 345778999999999999743 3344444
No 187
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.26 E-value=1 Score=43.63 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHhh--hcCCccEEEEec
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGF--KEGNKRILVATD 337 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~t~ 337 (418)
.+.+||.+|.++.+....+.|.+.++.+..++++.+..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 47899999999999999999999999999999999999988888877 568899999996
No 188
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.24 E-value=2.8 Score=38.26 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=54.1
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
.++|++++++..+..+++.+.+. ++.+..++|+.+...+... +.++..+|+|+|. .+ ..++++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~-----~~Gidip~v 345 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-----ARGLDISNV 345 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HH-----HTTSCCCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hh-----hcCCCcccC
Confidence 38999999999999888888764 7889999999876655444 3456679999994 22 345788888
Q ss_pred cEEEE
Q 014801 183 RHFIL 187 (418)
Q Consensus 183 ~~iVi 187 (418)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.15 E-value=0.31 Score=42.80 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
+.++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999976543
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.91 E-value=0.41 Score=41.89 Aligned_cols=41 Identities=12% Similarity=-0.039 Sum_probs=27.0
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHH
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 117 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l 117 (418)
.+.|.+|+|+|||..++-.+.......... +++|+..-.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~-~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDA-VCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTC-EEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eEEEEeccchh
Confidence 589999999999977655544444321122 78888765544
No 191
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.83 E-value=0.25 Score=54.19 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
+..+++.||+|+|||..+...+......+. +++|+...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEcc
Confidence 678999999999999876655555444332 67777754
No 192
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.73 E-value=3.7 Score=39.53 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=59.2
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
.++||+|+++.-+..+++.+++.... ++.+..++|+.....+... +..+..+|+|+|.- -..++++..+
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiDip~v 360 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 360 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCCcccC
Confidence 38999999999999999988876532 7889999999876655443 44577799999941 2346788889
Q ss_pred cEEEEechh
Q 014801 183 RHFILDECD 191 (418)
Q Consensus 183 ~~iViDE~h 191 (418)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998876543
No 193
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.32 E-value=4.2 Score=35.84 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEEecCCccHHHHHHHh
Q 014801 182 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 234 (418)
Q Consensus 182 ~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (418)
.+++++|.+............+..+.........++.+.++...+....+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45688888875443334445555554444555567777777765555544443
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.28 E-value=0.34 Score=40.76 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=29.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 126 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~ 126 (418)
.|.-+++.||+|+|||..++-.+...+..+. +++++.-... ..+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccCC-HHHHHHHHH
Confidence 4667899999999999765444443333222 5677664322 344444443
No 195
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.21 E-value=3.2 Score=33.43 Aligned_cols=74 Identities=12% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----cc-CCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----GR-GIDIE 346 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~~-G~d~~ 346 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++++.+..+.... + .+..+|+|+|. .+ .. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999999988887653 5677888888776544322 2 35678999995 22 22 34566
Q ss_pred CCCEEEEec
Q 014801 347 RVNIVINYD 355 (418)
Q Consensus 347 ~~~~vi~~~ 355 (418)
+++.+|.-.
T Consensus 146 ~~~~lViDE 154 (206)
T 1vec_A 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 777777533
No 196
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.95 E-value=0.67 Score=41.14 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCchhhH
Q 014801 72 ILGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~ 90 (418)
..|+.+++.||+|+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999999973
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.83 E-value=0.65 Score=41.81 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.1
Q ss_pred hhcCCcEEEEccCCCchhhH
Q 014801 71 AILGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~ 90 (418)
+..|..++++||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44588999999999999974
No 198
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.42 E-value=1 Score=39.74 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=31.3
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHH-hHHh-hhcCCcEEEEccCCCchhhHHH
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHE-CIPQ-AILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~-~~~~-~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+...|++.+-.+...+.+... + ..|.+.. .+.. ....+.+++.||+|+|||+.+-
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~-v--~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEA-V--ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH-H--HHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHH-H--HHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3456788877666666666532 0 0111110 0001 1123679999999999997643
No 199
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.01 E-value=2.9 Score=37.72 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----ccCCCCCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIER 347 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~G~d~~~ 347 (418)
+.++||.+++++.+.++.+.+.+. +..+..++|+.+....... +.++..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887764 6788899998887655443 4557778999994 23 23456677
Q ss_pred CCEEEEe
Q 014801 348 VNIVINY 354 (418)
Q Consensus 348 ~~~vi~~ 354 (418)
++.+|.-
T Consensus 153 ~~~vViD 159 (391)
T 1xti_A 153 IKHFILD 159 (391)
T ss_dssp CSEEEEC
T ss_pred cCEEEEe
Confidence 8877753
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.58 E-value=1.7 Score=37.75 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 201
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.57 E-value=1.1 Score=47.21 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=42.9
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCC---------CCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~---------~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
...+|.|+.|||||.+....+++.+... -...++|+|+=|+.-+.++.+++++.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4569999999999998887777777532 22347999999999999998888754
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.47 E-value=0.38 Score=42.10 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=31.5
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHhHHh--hhcCCcEEEEccCCCchhhHHH
Q 014801 34 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQ--AILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q-~~~~~~--~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+...|++.+-.+...+.+... +. .+.. .+.+.. +..++.+++.||+|+|||+.+-
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~-v~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQEL-VQ--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH-HH--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-HH--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4456688776666666555532 00 0111 011111 1235679999999999997643
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.43 E-value=0.47 Score=37.80 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.|+-++++||+|+|||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999754
No 204
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.40 E-value=0.94 Score=42.68 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCCcHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 48 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 48 ~~~~l~~~~~~~l~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
+...+.. .+..-...=..+...+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3344442 343333333445555566899999999999999754
No 205
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.27 E-value=0.46 Score=41.05 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHhHHhh--hcCCcEEEEccCCCchhhHH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQA--ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q-~~~~~~~--~~~~~~~v~~~tGsGKT~~~ 91 (418)
...|+++.-.+...+.+... + . .+.+ .+.+... .....+++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~-~-~-~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREV-V-E-LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHH-T-H-HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHH-H-H-HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45577776666666666532 1 0 0111 1122221 23567999999999999754
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.23 E-value=0.68 Score=42.20 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=27.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
.+.+++|.|+||+|||...-..+......+ .+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEeCCcC
Confidence 567899999999999976554444443322 26777767543
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.22 E-value=0.41 Score=40.87 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=17.1
Q ss_pred hhcCCcEEEEccCCCchhhHH
Q 014801 71 AILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~ 91 (418)
+..|.-+++.||+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 455777999999999999753
No 208
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.13 E-value=0.56 Score=37.81 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
++=.++.||+|+|||.-.+-.+-+....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 45578999999999965444444444433 278888886
No 209
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.10 E-value=3.7 Score=34.22 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----c-cCCCCCCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----G-RGIDIERV 348 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~-~G~d~~~~ 348 (418)
+.++||.+++++.+.++.+.+.+ .+..+..++|+.+.......+. ...+|+|+|. .+ . ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999999988777665 4788999999988776555433 2478999995 22 2 23567778
Q ss_pred CEEEEe
Q 014801 349 NIVINY 354 (418)
Q Consensus 349 ~~vi~~ 354 (418)
..+|.-
T Consensus 178 ~~lViD 183 (242)
T 3fe2_A 178 TYLVLD 183 (242)
T ss_dssp CEEEET
T ss_pred cEEEEe
Confidence 887753
No 210
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.04 E-value=1.3 Score=39.87 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||.++-
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 211
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.80 E-value=14 Score=36.28 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=58.9
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||.++++..+..+.+.+... ++++..++|+.....+... +..+..+|+|+|- .+ ..++++..++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-~l-----~~GlDip~v~ 509 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-LL-----REGLDIPEVS 509 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-CC-----CTTCCCTTEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-hh-----hcCccCCCCC
Confidence 8999999999999888887775 7888888988776655554 4557789999982 22 4567888899
Q ss_pred EEEEechhhh
Q 014801 184 HFILDECDKM 193 (418)
Q Consensus 184 ~iViDE~h~~ 193 (418)
++|+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9998887654
No 212
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.66 E-value=0.64 Score=43.10 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 119 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~ 119 (418)
...+++|.|+||+|||..+...+.+.+..+ ..++++=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g---~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG---DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT---CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCCchhH
Confidence 357899999999999986422333333222 26777777766643
No 213
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.58 E-value=2.8 Score=36.47 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=61.0
Q ss_pred CCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcE
Q 014801 84 GMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQI 160 (418)
Q Consensus 84 GsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i 160 (418)
...|..+ +..++.... ..++||.|+++.-++.+++.+... ++.+..++|+.+...+... +.++..+|
T Consensus 12 ~~~K~~~-L~~ll~~~~----~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 12 VRGRLEV-LSDLLYVAS----PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SSSHHHH-HHHHHHHHC----CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred HHHHHHH-HHHHHHhcC----CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3456643 333443333 127999999999888887777654 7889999999876655544 44567799
Q ss_pred EEeccHHHHHHHhcCCCCCCCccEEEEec
Q 014801 161 VVGTPGRILALARDKDLSLKNVRHFILDE 189 (418)
Q Consensus 161 ~v~T~~~l~~~~~~~~~~~~~~~~iViDE 189 (418)
+|+|- . -...+++..+++||.=+
T Consensus 82 LVaT~-v-----a~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 82 LVATD-V-----AARGLDIPQVDLVVHYR 104 (300)
T ss_dssp EEECS-T-----TTCSTTCCCCSEEEESS
T ss_pred EEEec-h-----hhcCccccceeEEEEcC
Confidence 99992 1 23467788888887533
No 214
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.57 E-value=2.2 Score=35.16 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC---CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----ccCCCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIERV 348 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~G~d~~~~ 348 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++++.+...+... +. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999888774 6678888887665543333 22 3478999994 22 235567778
Q ss_pred CEEEEec
Q 014801 349 NIVINYD 355 (418)
Q Consensus 349 ~~vi~~~ 355 (418)
+.+|.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877533
No 215
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=84.51 E-value=14 Score=33.07 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=57.2
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCc
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNV 182 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 182 (418)
.++|++++++.-+..+++.++.. +..+..++|+.+...+... +.++..+|+|+|. .-..++++.++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 38999999999999888888765 7788899998876655444 4556779999993 12456788889
Q ss_pred cEEEEechh
Q 014801 183 RHFILDECD 191 (418)
Q Consensus 183 ~~iViDE~h 191 (418)
++||.-+..
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 998876554
No 216
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.43 E-value=2.8 Score=34.84 Aligned_cols=75 Identities=11% Similarity=0.209 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-----cccc-CCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVGR-GIDIER 347 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~l~~-G~d~~~ 347 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++++.+... ....+..+..+|+|+|. .+.. .+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888764 456666777654332 23345567789999993 2233 356667
Q ss_pred CCEEEEec
Q 014801 348 VNIVINYD 355 (418)
Q Consensus 348 ~~~vi~~~ 355 (418)
++.+|.-.
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 77777543
No 217
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.42 E-value=0.55 Score=38.14 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999754
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.25 E-value=0.53 Score=38.08 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
++.+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556899999999999653
No 219
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.19 E-value=0.46 Score=50.21 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=29.9
Q ss_pred EEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHH
Q 014801 78 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 116 (418)
Q Consensus 78 ~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~ 116 (418)
+|.|+.|||||.+.+--+...+..+..+.+++++||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 788999999999887777666554444458999999653
No 220
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.13 E-value=0.56 Score=37.34 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
...+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999764
No 221
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.92 E-value=0.61 Score=37.82 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.++.+++.|++|+|||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46779999999999997653
No 222
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.54 E-value=0.56 Score=41.48 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
+-++|.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997654
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.46 E-value=0.65 Score=38.00 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.|.-+++.||+|+|||..+-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35668999999999997543
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.45 E-value=1.7 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+.++++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3678999999999999754
No 225
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.36 E-value=1.9 Score=49.64 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH----hHHhhhcCCcEEEEccCCCchhhHHH
Q 014801 44 LKPELLRAIVDSGFEHPSEVQHE----CIPQAILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 44 l~~~~~~~l~~~~~~~l~~~Q~~----~~~~~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
+...+.+.+...|. ++.+.+.. .+..+...+.++++||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34556677777776 55665533 22333447789999999999998754
No 226
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.24 E-value=0.54 Score=41.71 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.0
Q ss_pred HHhhhcCCcEEEEccCCCchhhHH
Q 014801 68 IPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 68 ~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
...+..+.++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334455889999999999999754
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.16 E-value=0.72 Score=39.67 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=27.5
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHhHHhhh--cCCcEEEEccCCCchhhHH
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQAI--LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q-~~~~~~~~--~~~~~~v~~~tGsGKT~~~ 91 (418)
+...|++.+-.+++.+.+... + ..|+. .+++..+- -.+.+++.||+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-I--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHH-H--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456788887777777766642 1 11222 22332221 1345999999999999753
No 228
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.04 E-value=5.7 Score=37.33 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
.+++++++|+|||..+.-.+......+. +++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~---kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW---KTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEec
Confidence 3778999999999765443333322221 4555553
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.99 E-value=0.56 Score=38.93 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCchhhHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l 93 (418)
..|.-+++.||+|+|||..+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHH
Confidence 3466789999999999965443
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.97 E-value=0.54 Score=37.72 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..|.-+++.||+|+|||+.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44667899999999999753
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.95 E-value=0.68 Score=37.58 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.|.-+.+.||+|+|||..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999754
No 232
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.87 E-value=1.3 Score=41.67 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=19.6
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhc
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
..+.+++|.|+||||||...-..++..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999997654444333
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.87 E-value=0.58 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999764
No 234
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.80 E-value=0.5 Score=37.48 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 235
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.62 E-value=1.1 Score=39.50 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=31.4
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 127 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~ 127 (418)
..|.-++|.|++|+|||..++-.+...+..+ .+++++.-- .-..|+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 3356699999999999976554444444433 267777743 223444444443
No 236
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.60 E-value=0.69 Score=36.71 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCchhhHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~ 92 (418)
..+..+++.|++|+|||..+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346679999999999997654
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.52 E-value=0.71 Score=37.61 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.7
Q ss_pred hhcCCcEEEEccCCCchhhHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+.-++++||+|+|||..+-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 4457779999999999997543
No 238
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.46 E-value=0.65 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
+-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999997654
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=82.41 E-value=0.85 Score=38.19 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
.|.-+.+.||.|+|||+ ++-++.-+..
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 36778999999999996 3445544443
No 240
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.37 E-value=0.75 Score=36.64 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
.+.+++.|++|+|||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.34 E-value=0.57 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998654
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.16 E-value=0.76 Score=37.32 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCchhhHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~ 92 (418)
..|.-+++.||+|||||..+-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 346678999999999997543
No 243
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=82.01 E-value=5.3 Score=36.78 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=54.4
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||+|+++.-++.+++.+... ++.+..++|+.....+... +.++...|+|+|. +-..++++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCC
Confidence 4899999999999888887764 7889999999876655544 4557779999994 224567888888
Q ss_pred EEEE
Q 014801 184 HFIL 187 (418)
Q Consensus 184 ~iVi 187 (418)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 244
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.92 E-value=0.72 Score=40.23 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-++|+||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999997654
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.74 E-value=0.84 Score=36.98 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.++-++++||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 46678999999999997543
No 246
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.59 E-value=6.8 Score=31.44 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC--CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----c-cCCCCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----G-RGIDIERVN 349 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~-~G~d~~~~~ 349 (418)
.+.+++|.+++++.+..+.+.+.+. ...+..++++.+.......+. +..+|+|+|. .+ . ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3468999999999999999988876 356777888776544433322 2568999994 22 2 245667788
Q ss_pred EEEEec
Q 014801 350 IVINYD 355 (418)
Q Consensus 350 ~vi~~~ 355 (418)
.+|.-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877543
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.18 E-value=1.4 Score=36.71 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhh
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTL 96 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~ 96 (418)
.|.-+++.||+|+|||..+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 466789999999999976554444
No 248
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.11 E-value=0.59 Score=39.33 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
|.-+++.|++|+|||..++-.+.+.+..... .++++.-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeecc
Confidence 5568999999999996554333333222111 4666653
No 249
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.04 E-value=5.3 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=55.2
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++|++++++.-+..+++.+.+. ++.+..++|+.....+... +.++..+|+|+|. .-..++++..++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 7999999999999988888775 7788899998876655544 4556779999993 124567888888
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887533
No 250
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.96 E-value=0.8 Score=38.84 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=13.6
Q ss_pred EEEEccCCCchhhHHH
Q 014801 77 VICQAKSGMGKTAVFV 92 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~ 92 (418)
++|+||+|||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999997653
No 251
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.92 E-value=0.87 Score=37.38 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=23.0
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
.|.-+++.|++|+|||..+...+. . ... +++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~-~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGK-KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCS-EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCC-cEEEEEC
Confidence 456689999999999976544433 1 112 5666653
No 252
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.85 E-value=0.86 Score=38.64 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
...+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 253
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.75 E-value=0.69 Score=36.62 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=41.1
Q ss_pred cHHHHHhHHhhhcC--CcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHH
Q 014801 61 SEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 121 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~--~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~ 121 (418)
.+-|..++..++.. .-.+|.+.-|++|+...+..++......+. ++.+++|+..-..+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr--~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGR--EVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC--CEEEECSTTHHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCe--EEEEEcCchHHHHHH
Confidence 46788899888763 347889999999998754444444443332 799999997655443
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.57 E-value=1.6 Score=36.85 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=29.3
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhh--cCCcEEEEccCCCchhhHH
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~~v~~~tGsGKT~~~ 91 (418)
+..+|+++.-.+.....+.... ... -...++..+- -.+.+++.||+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~--~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIV--EFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHH--HHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH--HHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456777766666555554320 000 0112222221 1345999999999999754
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.57 E-value=0.98 Score=36.11 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44789999999999753
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.52 E-value=1 Score=37.17 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..|+-+.|.||+|+|||..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34777999999999999743
No 257
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.52 E-value=3.7 Score=33.62 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----ccCCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIER 347 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~G~d~~~ 347 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++|+.+..+.... +. +.+|+|+|. .+ ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999988877653 5677888887665443322 22 378999994 22 23456667
Q ss_pred CCEEEEec
Q 014801 348 VNIVINYD 355 (418)
Q Consensus 348 ~~~vi~~~ 355 (418)
++.+|.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 77777533
No 258
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=80.48 E-value=1.4 Score=37.60 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
.|.-+.+.||.|+|||+ ++-++.-+..
T Consensus 36 ~Ge~~~liG~nGsGKST--Ll~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST--LLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHH--HHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 36778999999999997 3444444443
No 259
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.40 E-value=5.3 Score=36.28 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=54.5
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++|++|+++.-+..+++.+... ++.+..++|+.....+... +.++...|+|+|.- -..++++..++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v~ 346 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLDVPQVS 346 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCCCTTEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCCcccCC
Confidence 7999999999999888887764 7888899998876655443 44566799999941 24567888888
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887533
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.34 E-value=0.61 Score=36.81 Aligned_cols=20 Identities=25% Similarity=0.111 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.|.-+.+.||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35668999999999997543
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.28 E-value=1 Score=35.27 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+..+++.|+.|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999754
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.27 E-value=0.87 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhhH
Q 014801 75 MDVICQAKSGMGKTAV 90 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~ 90 (418)
+.++|+||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 263
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.20 E-value=1.6 Score=38.62 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHT 114 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~ 114 (418)
|.-+++.|++|+|||..++-.+....... ..+.+++|+.-.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 45689999999999976554444433221 112267777654
No 264
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.16 E-value=0.92 Score=39.41 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=29.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHhHHhh-hcCCcEEEEccCCCchhhHH
Q 014801 36 SSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQA-ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 36 ~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q-~~~~~~~-~~~~~~~v~~~tGsGKT~~~ 91 (418)
...|+++.-.+...+.+... .. .+.. .+.+..+ ...+.+++.||+|+|||..+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~-i~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEM-VI--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-TH--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHH-HH--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 35577766566666655532 10 0100 0011111 12567999999999999764
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.99 E-value=0.76 Score=38.98 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999754
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.76 E-value=0.81 Score=41.35 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..+..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667999999999999753
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.74 E-value=0.86 Score=36.43 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|++|+|||..+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 268
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.74 E-value=6.5 Score=35.49 Aligned_cols=71 Identities=7% Similarity=0.143 Sum_probs=54.2
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++|++++++.-+..+++.+... ++.+..++|+.+...+... +.++...|+|+|. .-..++++..++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 7999999999999988888776 7888899998876655443 4456779999993 123467788888
Q ss_pred EEEEe
Q 014801 184 HFILD 188 (418)
Q Consensus 184 ~iViD 188 (418)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87753
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=79.72 E-value=0.79 Score=35.91 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|+|||..+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999997653
No 270
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.71 E-value=9.2 Score=33.82 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=53.4
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++|++++++.-+..+++.++.. ++.+..++|+.+...+... +.++..+|+|+|. .+. .++++..++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~-----~Gid~~~~~ 308 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMS-----RGIDVNDLN 308 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THH-----HHCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhh-----cCCCcccCC
Confidence 7899999999999888888765 7888999998776655443 4456679999993 222 235677788
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
++|.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887643
No 271
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.68 E-value=0.8 Score=37.26 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=26.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhHHhhhcC----CcEEEEccCCCchhhHH
Q 014801 45 KPELLRAIVDSGFEHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 45 ~~~~~~~l~~~~~~~l~~~Q~~~~~~~~~~----~~~~v~~~tGsGKT~~~ 91 (418)
...+.+-|.-.++ .+-.+ ...+..++.+ +.+++.||+|+|||..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3455555554432 33333 3334444443 35899999999999754
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.64 E-value=0.89 Score=40.76 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.+..++|.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355689999999999964
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=79.35 E-value=1.2 Score=38.26 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+ ++.++.-+.
T Consensus 33 ~Ge~~~iiGpnGsGKST--Ll~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST--LFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHcCC
Confidence 36778999999999997 344444443
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=79.29 E-value=1.2 Score=37.54 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+. +-++.-+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL--TKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 367789999999999973 34444443
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.28 E-value=1.1 Score=35.68 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+..+++.|++|+|||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998653
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.22 E-value=0.99 Score=39.23 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999997643
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=79.20 E-value=1.3 Score=36.35 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTL--lk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL--LKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 467789999999999973 3444433
No 278
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=79.18 E-value=1.3 Score=37.35 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||.. +.++.-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI--FSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 366789999999999973 34444433
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.14 E-value=0.85 Score=36.02 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36899999999997643
No 280
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=78.97 E-value=1.3 Score=36.78 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||+ ++-++.-+.
T Consensus 29 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST--LLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36678999999999996 344444443
No 281
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.80 E-value=1 Score=39.58 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.++|+||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997654
No 282
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.70 E-value=3.6 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999754
No 283
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=78.46 E-value=1.2 Score=36.17 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.0
Q ss_pred cEEEEccCCCchhhHHHHHhhhc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQ 98 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~ 98 (418)
-.++.|++|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999998765444443
No 284
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.43 E-value=8.8 Score=32.40 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-----ccc--cCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVG--RGIDIE 346 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~l~--~G~d~~ 346 (418)
.+.++||.+++++.+.++.+.+.+. +..+..+.|+......... +.++ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888763 5567778888776554433 3333 78999994 111 246777
Q ss_pred CCCEEEEe
Q 014801 347 RVNIVINY 354 (418)
Q Consensus 347 ~~~~vi~~ 354 (418)
++..+|.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 78887753
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.41 E-value=0.9 Score=43.16 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCccEEEEechhhhccC-CCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 180 KNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 180 ~~~~~iViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
....+|+|||+|.+... ......+..+.... ..++++++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35578999999988652 11224444444432 345777777653
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.36 E-value=2.5 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.3
Q ss_pred HhhhcCCcEEEEccCCCchhhHHHHHh
Q 014801 69 PQAILGMDVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 69 ~~~~~~~~~~v~~~tGsGKT~~~~l~~ 95 (418)
.-+..|.-++|.||+|+|||+.+...+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 345567889999999999997654433
No 287
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=78.35 E-value=1.4 Score=39.42 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=18.1
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
+..+++|.+ ++.-|.||||||+++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 344455766 5668999999998753
No 288
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.31 E-value=1.3 Score=36.66 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=15.7
Q ss_pred hhcCCcEEEEccCCCchhhH
Q 014801 71 AILGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~ 90 (418)
+..|.-++|.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34577799999999999974
No 289
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.25 E-value=1.1 Score=40.27 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999997644
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.17 E-value=0.92 Score=36.11 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|+.|||||+.+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 291
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=78.11 E-value=1.8 Score=36.79 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=30.3
Q ss_pred CHHHHHHHHHCCCCCCcHHH-HHhHHhhhcCC-----cEEEEccCCCchhhHHH
Q 014801 45 KPELLRAIVDSGFEHPSEVQ-HECIPQAILGM-----DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 45 ~~~~~~~l~~~~~~~l~~~Q-~~~~~~~~~~~-----~~~v~~~tGsGKT~~~~ 92 (418)
...+.+.|...|+ .+.+ ..++..++.++ .+++.||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3467788876665 3555 33345555543 48999999999997654
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.09 E-value=1.3 Score=39.64 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
.|.-++|.|++|+|||..++..+......+. +++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC
Confidence 4566899999999999765544444333222 57777643
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.07 E-value=0.94 Score=35.69 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|+.|+|||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999997543
No 294
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.06 E-value=1.5 Score=38.38 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3678999999999999754
No 295
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=78.01 E-value=1.4 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|+-+.+.||.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999963
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.00 E-value=1.1 Score=39.65 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-++|+||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997654
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.98 E-value=1.8 Score=37.57 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhhHHHHHh
Q 014801 74 GMDVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~ 95 (418)
++-+++.|++|+|||..+...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3458889999999997654433
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.93 E-value=1.3 Score=36.09 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=16.1
Q ss_pred hhhcCCcEEEEccCCCchhhH
Q 014801 70 QAILGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 70 ~~~~~~~~~v~~~tGsGKT~~ 90 (418)
.+..|+-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456678899999999999974
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.84 E-value=1.1 Score=39.21 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||+|+|||.. +.++..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 367799999999999974 34444443
No 300
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.81 E-value=2.4 Score=40.44 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCC-CCCCeeEEEecCc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHT 114 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~-~~~~~~~lii~P~ 114 (418)
..+++|.|.||||||.+.-..++..+.. .+...+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4679999999999997755555554433 2333344444444
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=77.75 E-value=1.4 Score=37.36 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||+ ++-++.-+.
T Consensus 32 ~Ge~~~liG~nGsGKST--Llk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST--LINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 36678999999999997 344444443
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.67 E-value=25 Score=32.15 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=15.0
Q ss_pred cEEEEccCCCchhhHHHHHh
Q 014801 76 DVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~ 95 (418)
-+.+.++.|+|||+.+...+
T Consensus 100 vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36778999999997654433
No 303
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.60 E-value=5.5 Score=41.43 Aligned_cols=75 Identities=5% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CC----CeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccccCCC-CCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGID-IER 347 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~~G~d-~~~ 347 (418)
.+.++||.+|+++.+.++.+.+.+. +. .+..++|+.+...+....+.+.+ .+|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4578999999999999988887653 55 78889999998888777777776 89999995 3333322 556
Q ss_pred CCEEEEe
Q 014801 348 VNIVINY 354 (418)
Q Consensus 348 ~~~vi~~ 354 (418)
++++|.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777753
No 304
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=77.60 E-value=1.5 Score=37.39 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
|.-+.+.||.|+|||+. +-++.-+.
T Consensus 50 Gei~~liG~NGsGKSTL--lk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTF--LRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHH--HHHHHcCC
Confidence 66789999999999973 44444443
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=77.45 E-value=1.5 Score=37.57 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+ ++-++.-+.
T Consensus 44 ~Ge~~~i~G~nGsGKST--Llk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST--VAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36778999999999997 344444443
No 306
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.45 E-value=1.5 Score=36.79 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||+. +-++.-+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL--l~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT--LSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 366789999999999973 44444443
No 307
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=77.42 E-value=1.5 Score=37.34 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+. +-++.-+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL--lk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF--LRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 366789999999999973 44444443
No 308
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.39 E-value=5.4 Score=36.93 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEc--------CcchHHHH---H
Q 014801 83 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG--------GVNIKIHK---D 151 (418)
Q Consensus 83 tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~ 151 (418)
..++|... +..++........+.++||.++++..+..+.+.++.. ++++..++| +.+...+. .
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~ 413 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILD 413 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHH
Confidence 45566644 3334433221111238999999999988888877765 788888888 55443333 3
Q ss_pred HhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEEEech
Q 014801 152 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 190 (418)
Q Consensus 152 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~ 190 (418)
.+.++...|+|+| +.+ ..++++..+++||+-+.
T Consensus 414 ~F~~~~~~vLv~T-~~~-----~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 414 EFARGEFNVLVAT-SVG-----EEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHTSCSEEEEC-GGG-----GGGGGSTTCCEEEESSC
T ss_pred HHhcCCceEEEEC-Ccc-----ccCCCchhCCEEEEeCC
Confidence 3445667999999 322 34567788888886544
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=77.04 E-value=1.6 Score=37.05 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+. +-++.-+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL--lk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT--LRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHH--HHHHhcCC
Confidence 366789999999999973 44444443
No 310
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.96 E-value=1.6 Score=38.37 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=18.2
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
+..+++|.+ ++.-|.||||||+++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 334556766 5668999999998753
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.94 E-value=1.5 Score=35.55 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+.-+++.|+.|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 312
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.85 E-value=4.6 Score=33.41 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----cc--CCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----GR--GIDIE 346 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~~--G~d~~ 346 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 36788888876654443332 4678999994 22 12 35666
Q ss_pred CCCEEEEe
Q 014801 347 RVNIVINY 354 (418)
Q Consensus 347 ~~~~vi~~ 354 (418)
+++.+|.-
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 77777753
No 313
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.80 E-value=1.5 Score=39.32 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=25.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
.+.-++|.|++|+|||..++-.+......+. +++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeC
Confidence 3566899999999999776554444433222 5777765
No 314
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.74 E-value=2.2 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.136 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCchhhHHHHHhhh
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQ 97 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~ 97 (418)
|.-++|.|++|+|||..++-.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999765544443
No 315
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.71 E-value=1.7 Score=35.95 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.2
Q ss_pred cEEEEccCCCchhhHHHHHhhhccCC
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
++++.++.|.|||..++-.+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48899999999998765555444443
No 316
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.67 E-value=22 Score=33.30 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=50.9
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HhhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
+.++++.+..-+..+.+.+... +.++..++|+.....+.. .+.++..+|+|+|++.+.. ++++.+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 4445555555555555554443 458889999887655443 3455777999999888764 46788899
Q ss_pred EEEEechh
Q 014801 184 HFILDECD 191 (418)
Q Consensus 184 ~iViDE~h 191 (418)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.66 E-value=0.89 Score=37.85 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=12.4
Q ss_pred hcCCcEEEEccCCCchhhHH
Q 014801 72 ILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~ 91 (418)
..|.-+.+.||+|+|||..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999754
No 318
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.36 E-value=1.7 Score=40.31 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 113 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P 113 (418)
.|.-++|.|++|+|||..++-.+...+..+ .+++++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 355689999999999976555455444432 26777764
No 319
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.33 E-value=21 Score=29.68 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccc-----cCCCCCCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVG-----RGIDIERV 348 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~-----~G~d~~~~ 348 (418)
+.++||.+++++.+.++.+.+.+. +..+..++|+.+.......+ ....+|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988877653 46677788877655443332 24678999994 222 23566677
Q ss_pred CEEEEec
Q 014801 349 NIVINYD 355 (418)
Q Consensus 349 ~~vi~~~ 355 (418)
+.+|.-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 7777533
No 320
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.27 E-value=1.2 Score=41.28 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.+++.||+|+|||+.+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=76.05 E-value=1.7 Score=37.06 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||+. +-++.-+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL--l~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL--LQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCCC
Confidence 366789999999999973 44444443
No 322
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=76.04 E-value=1.3 Score=37.16 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.6
Q ss_pred hhcCCcEEEEccCCCchhhHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~ 92 (418)
+..|.-+.+.||+|+|||..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3457779999999999997544
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=76.03 E-value=1.2 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.-+++.|+.|+|||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=75.97 E-value=1.2 Score=35.63 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-+++.||+|+|||..+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46889999999997543
No 325
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.96 E-value=1.8 Score=37.60 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=17.7
Q ss_pred hhcCCcEEEEccCCCchhhHHHH
Q 014801 71 AILGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 71 ~~~~~~~~v~~~tGsGKT~~~~l 93 (418)
+..|.-++|.|++|+|||..+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 33467799999999999975443
No 326
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.94 E-value=1.6 Score=37.54 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=30.4
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHhHHhhh--cCCcEEEEccCCCchhhHH
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~~Q~~~~~~~~--~~~~~~v~~~tGsGKT~~~ 91 (418)
+...|+++.-.+...+.+...- .... ...++..+- -.+.+++.||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~--~~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIV--EFLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHH--HHHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH--HHHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4566888777776666655320 0000 012222211 1344999999999999753
No 327
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=75.90 E-value=1.8 Score=38.64 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=17.3
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..++.|.+ ++.-|.||||||+++
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34556766 566899999999875
No 328
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.83 E-value=1.5 Score=39.61 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 329
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=75.81 E-value=1.7 Score=37.37 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.|.||.|+|||+. +-++.-+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL--lk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL--LNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCCC
Confidence 366789999999999973 44444433
No 330
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.74 E-value=1.3 Score=40.09 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36889999999997654
No 331
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=75.73 E-value=1.8 Score=38.50 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=17.2
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..+++|.+ ++.-|.||||||+++
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34455766 566899999999875
No 332
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.71 E-value=3.3 Score=47.23 Aligned_cols=48 Identities=29% Similarity=0.166 Sum_probs=31.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHH----hHHhhhcCCcEEEEccCCCchhhHHHH
Q 014801 45 KPELLRAIVDSGFEHPSEVQHE----CIPQAILGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 45 ~~~~~~~l~~~~~~~l~~~Q~~----~~~~~~~~~~~~v~~~tGsGKT~~~~l 93 (418)
.+.+.+.+...++ .+.+.+.. .+..+...+.+++.||||+|||.++-.
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 3456666666666 45555522 233344478899999999999987543
No 333
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=75.47 E-value=1.9 Score=38.77 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=17.7
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
+..+++|.+ ++.-|.||||||+++
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 334556766 566899999999875
No 334
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=75.36 E-value=1.9 Score=38.04 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=19.5
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4555667776 5668999999998753
No 335
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.27 E-value=1.1 Score=39.97 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcH
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 115 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~ 115 (418)
|.-++|.||+|+|||..++..+......+. +++++....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 456899999999999765443333322222 577776543
No 336
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.14 E-value=1.3 Score=33.90 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-.+|.||+|+|||.+.
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999753
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.14 E-value=1.8 Score=34.66 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCchhhHHH
Q 014801 72 ILGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~ 92 (418)
..+..+++.|+.|||||..+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678999999999998653
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.13 E-value=2.5 Score=37.65 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=25.1
Q ss_pred CcEEEEccCCCchhhHHHHHhhhccCCC---CCCeeEEEecCcH
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 115 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~~~~---~~~~~~lii~P~~ 115 (418)
.-++|.|++|+|||..++-.+....... ..+.+++|+....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4489999999999976554444422211 0122677776543
No 339
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=75.10 E-value=1.9 Score=38.45 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=18.5
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
.+..+++|.+ ++.-|.||||||+++
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445566776 566899999999875
No 340
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=75.09 E-value=2 Score=38.30 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=16.8
Q ss_pred hhhcCCc--EEEEccCCCchhhHH
Q 014801 70 QAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 70 ~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
.+++|.+ ++.-|.||||||+++
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3455766 566899999999875
No 341
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=75.06 E-value=1.9 Score=38.44 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.1
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..+++|.+ ++.-|.||||||+++
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 33455766 566899999999875
No 342
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=75.05 E-value=1.9 Score=38.46 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=17.5
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
+..+++|.+ ++.-|.||||||+++
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344456776 566799999999875
No 343
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.99 E-value=1.3 Score=38.44 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.-++++||+|+|||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999997543
No 344
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.81 E-value=2 Score=38.56 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=17.8
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
+..+++|.+ ++.-|.||||||+++
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344556776 566899999999875
No 345
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.81 E-value=1.9 Score=38.32 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=17.0
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..+++|.+ ++.-|.||||||+++
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33445766 566899999999875
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.76 E-value=1 Score=36.68 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=16.7
Q ss_pred hhhcCCcEEEEccCCCchhhHH
Q 014801 70 QAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 70 ~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
.+..+.-+.|.|++|+|||..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3344556889999999999754
No 347
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.75 E-value=2 Score=39.02 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=17.6
Q ss_pred HhhhcCCc--EEEEccCCCchhhHHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
..++.|.+ ++.-|.||||||+++.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 34456766 5668999999998753
No 348
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.74 E-value=1.8 Score=37.71 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997653
No 349
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.70 E-value=2.1 Score=38.08 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=19.6
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4555667777 5668999999998754
No 350
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.67 E-value=1.3 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+.-+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998653
No 351
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=74.62 E-value=1.9 Score=38.55 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=18.7
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..++.|.+ ++.-|.||||||+++.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 3344556776 5668999999998753
No 352
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.61 E-value=0.9 Score=38.77 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999997653
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.58 E-value=2.1 Score=36.11 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+..+++.|++|+|||.++-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38899999999999997643
No 354
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.55 E-value=1.6 Score=40.71 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
++++++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 467999999999999765
No 355
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.55 E-value=2.2 Score=37.92 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=19.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4455566776 5668999999998754
No 356
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.52 E-value=1.7 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 357
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.40 E-value=2.1 Score=38.39 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=17.2
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..++.|.+ ++.-|.||||||+++
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34455766 566899999999875
No 358
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.39 E-value=2 Score=34.17 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=24.2
Q ss_pred EEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHH
Q 014801 77 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 128 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 128 (418)
++|.|++|||||.-+.-.+.. + . +++++......-.++.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~--~-~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----A--P-QVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----C--S-SEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc----C--C-CeEEEecCCCCCHHHHHHHHHH
Confidence 589999999999644322211 1 2 5788877554434444445444
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=74.35 E-value=1.7 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+..+++.|+.|||||+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998653
No 360
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.33 E-value=1.9 Score=37.69 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhhHHHH
Q 014801 76 DVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l 93 (418)
-+++.+++|+|||+.+..
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 478899999999976543
No 361
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.22 E-value=1.6 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+.|.||+|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999643
No 362
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.14 E-value=1.3 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997653
No 363
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.08 E-value=1.8 Score=34.34 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhhH
Q 014801 76 DVICQAKSGMGKTAV 90 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~ 90 (418)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999964
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.02 E-value=2.8 Score=36.57 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+.+.||+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 445788999999999754
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.78 E-value=1.4 Score=35.92 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.-+++.|+.|||||..+-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34568999999999997653
No 366
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=73.75 E-value=10 Score=37.82 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=53.6
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----c----
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----G---- 340 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~---- 340 (418)
....+..++|.+++++.|...++.+.. .|+.+.++.|+++...+.... .++|+++|+ -+ .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 445667899999999999988877654 589999999999987665542 368999995 23 1
Q ss_pred ---cCCCCCCCCEEEE
Q 014801 341 ---RGIDIERVNIVIN 353 (418)
Q Consensus 341 ---~G~d~~~~~~vi~ 353 (418)
..+++..++.+|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 2355566777664
No 367
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.68 E-value=1.7 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+.-+.+.|+.|+|||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566889999999999754
No 368
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.65 E-value=2 Score=38.66 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 114 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~ 114 (418)
+.-++|.|++|+|||..++-.+......+. +++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECC
Confidence 456899999999999765544444333222 57777643
No 369
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.51 E-value=2.2 Score=38.81 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=19.5
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4555667777 5668999999998753
No 370
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=73.45 E-value=1.9 Score=33.59 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.7
Q ss_pred CcEEEEccCCCchhhHHHH
Q 014801 75 MDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l 93 (418)
+++++.|+.|||||.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 371
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=73.44 E-value=2.3 Score=37.77 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=17.1
Q ss_pred HhhhcCCc--EEEEccCCCchhhHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
..+++|.+ ++.-|.||||||+++
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34455766 566899999999875
No 372
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.68 E-value=0.69 Score=36.40 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=49.2
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---hhcCCCcEEEeccHHHHHHHhcCCCCCCCcc
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 183 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 183 (418)
++||.++++..+..+++.++.. ++.+..++|+.+...+... +.++...|+|+| +.+. .++++..++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~-----~Gid~~~~~ 100 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAA-----RGIDIPDVS 100 (170)
Confidence 7999999999888887777664 6778888888665544433 344566899988 3332 345566666
Q ss_pred EEEEec
Q 014801 184 HFILDE 189 (418)
Q Consensus 184 ~iViDE 189 (418)
+||.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 666543
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.34 E-value=1.8 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999754
No 374
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.22 E-value=2.1 Score=38.52 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=17.7
Q ss_pred HhhhcCCc--EEEEccCCCchhhHHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
..+++|.+ ++.-|.||||||+++.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCceEEEEeecCCCCCcceecc
Confidence 34555766 5668999999998753
No 375
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=73.19 E-value=1.9 Score=38.86 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=22.5
Q ss_pred CcHHHHHhHHh--------hhcCCc--EEEEccCCCchhhHHH
Q 014801 60 PSEVQHECIPQ--------AILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 60 l~~~Q~~~~~~--------~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
+..-|.+++.. +++|.+ ++.-|.||||||+++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 44556666653 445666 5668999999998753
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.16 E-value=1.5 Score=34.94 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|+|||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997653
No 377
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.13 E-value=1.5 Score=36.24 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhhHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l 93 (418)
.|.-+.|.||+|+|||..+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999975443
No 378
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.11 E-value=2.2 Score=36.02 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||.. +-++.-+.
T Consensus 25 ~Ge~~~liG~NGsGKSTL--lk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL--LARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCCC
Confidence 367789999999999973 44444443
No 379
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.03 E-value=1.9 Score=37.62 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|+-+.|.||+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477799999999999964
No 380
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.88 E-value=3.9 Score=37.84 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=45.8
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
+++|+||++.-+..+++.++.. ++++..++|.. .......+.++..+|+|+|.- -...+++. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~v------~e~GiDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATDI------AEMGANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESSS------TTCCTTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECCh------hheeeccC-ceEEE
Confidence 7999999999999988888775 77888888843 333445566677899999931 13456777 88776
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.83 E-value=2.1 Score=33.61 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|||||.++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999997654
No 382
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.82 E-value=2 Score=38.52 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=19.0
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
.+..++.|.+ ++.-|.||||||+++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4455567776 5668999999998753
No 383
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.62 E-value=4.7 Score=43.10 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCCccEEEEechhhhccCCCCHHHHHHHHhhCCCCccEEEEE
Q 014801 179 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 220 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (418)
+++.+++++||+=.-.+... ...+.+.+....++..+|..|
T Consensus 570 ~~~~~IliLDE~tSaLD~~t-e~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAES-EGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTT-HHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHH-HHHHHHHHHHHhCCCEEEEEc
Confidence 45778999999987776433 455555554443444344443
No 384
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=72.40 E-value=2.1 Score=38.50 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-++|.||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=72.36 E-value=2.1 Score=35.40 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
...+++.|++|||||..+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=72.35 E-value=2.3 Score=34.08 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCCccEEEEechhhhccC-CCCHHHHHHHHhhCCCCccEEEEEecCC
Q 014801 179 LKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLS 224 (418)
Q Consensus 179 ~~~~~~iViDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (418)
..+.+++|+||+..+... ..+...+..++.. ...+++-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 466789999997554321 2344455555542 233454466653
No 387
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=72.02 E-value=2 Score=35.08 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhhHHHH
Q 014801 76 DVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l 93 (418)
.+++.|+.|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986543
No 388
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.94 E-value=2.3 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhhHHHH
Q 014801 76 DVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l 93 (418)
-+.+.+++|+|||+.+..
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 389
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=71.86 E-value=3 Score=36.62 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.9
Q ss_pred EEEEccCCCchhhHH
Q 014801 77 VICQAKSGMGKTAVF 91 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~ 91 (418)
++|.|+.|+|||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 689999999999753
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.70 E-value=2.4 Score=33.53 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.|++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 347899999999998653
No 391
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=71.65 E-value=2.6 Score=38.90 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=17.5
Q ss_pred HhhhcCCc--EEEEccCCCchhhHHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
..+++|.+ ++.-|.||||||+++.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEee
Confidence 33456766 5668999999998753
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=71.61 E-value=2.7 Score=35.17 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=16.4
Q ss_pred CcEEEEccCCCchhhHHHHHhhhcc
Q 014801 75 MDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.-+.+.||.|+|||+. +-++.-+
T Consensus 25 e~~~liG~nGsGKSTL--l~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF--LELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHH--HHHHHTS
T ss_pred EEEEEECCCCCCHHHH--HHHHhCC
Confidence 4578999999999973 3444443
No 393
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=71.60 E-value=11 Score=37.74 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=52.5
Q ss_pred hhcCCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecc-c-----ccC--
Q 014801 275 DALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRG-- 342 (418)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-l-----~~G-- 342 (418)
....+.+++|.+++++.|...++.+.. .++.+.++.|+++...+.... .++|+|+|+. + ..+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~ 184 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMA 184 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhh
Confidence 344567899999999999888777654 489999999999986655442 3689999953 2 223
Q ss_pred -----CCCCCCCEEEE
Q 014801 343 -----IDIERVNIVIN 353 (418)
Q Consensus 343 -----~d~~~~~~vi~ 353 (418)
++...+..+|.
T Consensus 185 ~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 185 FSPEERVQRKLHYALV 200 (853)
T ss_dssp SSGGGCCCCSCCEEEE
T ss_pred ccHhHhcccCCcEEEE
Confidence 44556776664
No 394
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=71.54 E-value=2.6 Score=38.02 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=17.6
Q ss_pred HhhhcCCc--EEEEccCCCchhhHHH
Q 014801 69 PQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 69 ~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
..+++|.+ ++.-|.||||||+++.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 34556766 5668999999998753
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=71.50 E-value=2.4 Score=33.96 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+.-+++.|++|||||..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5568999999999997643
No 396
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.44 E-value=1.3 Score=39.39 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999754
No 397
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=71.38 E-value=2.1 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+.|.||+|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445789999999999753
No 398
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=71.29 E-value=5.6 Score=36.65 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=47.1
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHF 185 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 185 (418)
+++|++|++.-++.+++.+++. ++++..++|.. .......+.++..+|+|+|. .+ ...+++. +..|
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~-v~-----e~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD-IS-----EMGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG-GG-----GTSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc-hH-----HcCcccC-CcEE
Confidence 7999999999999888888775 77888999873 33334445667789999993 11 2345665 5544
No 399
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.19 E-value=2.4 Score=38.65 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=19.0
Q ss_pred hHHhhhcCCc--EEEEccCCCchhhHH
Q 014801 67 CIPQAILGMD--VICQAKSGMGKTAVF 91 (418)
Q Consensus 67 ~~~~~~~~~~--~~v~~~tGsGKT~~~ 91 (418)
.+..+++|.+ ++.-|.||||||+++
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555667777 566899999999875
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.16 E-value=5.3 Score=35.06 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.1
Q ss_pred EEEEccCCCchhhHH
Q 014801 77 VICQAKSGMGKTAVF 91 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~ 91 (418)
+.|.||+|+|||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999754
No 401
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=71.08 E-value=14 Score=37.25 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=54.0
Q ss_pred HhhcCCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----cc--
Q 014801 274 LDALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GR-- 341 (418)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~-- 341 (418)
+....+..++|.+++++.|...++++.. .|+.+.++.|+++...+.... .++|+++|+ -+ ..
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 3445667899999999999888877654 589999999999987666543 368999995 22 12
Q ss_pred -----CCCCCCCCEEEE
Q 014801 342 -----GIDIERVNIVIN 353 (418)
Q Consensus 342 -----G~d~~~~~~vi~ 353 (418)
.++...++.+|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 355556776664
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=71.08 E-value=2.3 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-.+|.||+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999753
No 403
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=71.05 E-value=2.6 Score=37.65 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
|.-+.+.||.|+|||+. +-++.-+
T Consensus 30 Ge~~~llGpsGsGKSTL--Lr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTL--LRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHH--HHHHHTS
T ss_pred CCEEEEECCCCchHHHH--HHHHhcC
Confidence 66689999999999963 4444433
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=70.99 E-value=2.2 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhhHHHH
Q 014801 76 DVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l 93 (418)
.+++.|+.|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986543
No 405
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.95 E-value=2.6 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+.+.||+|+|||+..
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 344789999999999754
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.58 E-value=2.4 Score=34.57 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=20.5
Q ss_pred cHHHHHhHHhhhcCCcEEEEccCCCchhhHH
Q 014801 61 SEVQHECIPQAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 61 ~~~Q~~~~~~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
.+.++... .+..+.-+++.|+.|+|||..+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 2344667889999999999754
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.51 E-value=2.3 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|||||..+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.44 E-value=1.9 Score=34.06 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
|..+++.|+.|||||..+
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556889999999999754
No 409
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=70.44 E-value=2.7 Score=35.27 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
...+++.|+.|||||+.+-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 410
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.36 E-value=1.9 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
.+.|.|+.|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999754
No 411
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=70.34 E-value=5.8 Score=34.40 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC-----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEecc-c-----c-cCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----G-RGIDI 345 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-l-----~-~G~d~ 345 (418)
.+.++||.+++++.+.++...+.+. +..+....++..... -.....+|+|+|+- + . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-------hhcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 3347999999999999988887654 355666666543211 11356689999952 2 1 35677
Q ss_pred CCCCEEEEec
Q 014801 346 ERVNIVINYD 355 (418)
Q Consensus 346 ~~~~~vi~~~ 355 (418)
.++.++|+-.
T Consensus 234 ~~l~~lVlDE 243 (300)
T 3fmo_B 234 KKIKVFVLDE 243 (300)
T ss_dssp GGCSEEEETT
T ss_pred hhceEEEEeC
Confidence 7788887533
No 412
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=70.34 E-value=1.8 Score=33.61 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.4
Q ss_pred hcCCcEEEEccCCCchhhH
Q 014801 72 ILGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~ 90 (418)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466688999999999963
No 413
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=70.08 E-value=2.4 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+.+.|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999997543
No 414
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.08 E-value=2.4 Score=34.33 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+.+.|+.|||||+++-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997643
No 415
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.08 E-value=2.6 Score=34.63 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.08 E-value=2.4 Score=33.03 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
+.+++.|+.|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997653
No 417
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=70.06 E-value=2.8 Score=37.74 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=18.1
Q ss_pred HHhhhcCCc--EEEEccCCCchhhHHH
Q 014801 68 IPQAILGMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 68 ~~~~~~~~~--~~v~~~tGsGKT~~~~ 92 (418)
+..+++|.+ ++.-|.||||||+++.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344556766 5668999999998753
No 418
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=69.80 E-value=2.9 Score=37.43 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
.|.-+.|.||.|+|||+ ++-++.-+..
T Consensus 53 ~Gei~~IiGpnGaGKST--Llr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKST--LIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHH--HHHHHhcCCC
Confidence 36678999999999996 3455555443
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.67 E-value=2 Score=34.65 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
.+++.|+.|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 420
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.65 E-value=2.5 Score=40.89 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhhH
Q 014801 76 DVICQAKSGMGKTAV 90 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~ 90 (418)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 421
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=69.58 E-value=2.9 Score=37.33 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 40 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTI--LRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 366789999999999973 4444433
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=69.44 E-value=3 Score=37.32 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT--LLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHCC
Confidence 366689999999999973 4444443
No 423
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.40 E-value=2.5 Score=34.33 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchhhHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~ 92 (418)
.+.-+++.|+.|||||..+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35668999999999998654
No 424
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=69.23 E-value=2.2 Score=33.19 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 425
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=69.19 E-value=18 Score=30.75 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHh---hcC-CC
Q 014801 83 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KNE-CP 158 (418)
Q Consensus 83 tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~ 158 (418)
..+||... +..++...... +.++||.+.+...++.+.+.+.... ++.+..++|+.+...+...+ .++ ..
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDE--GDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHH-HHHHHHHHHhC--CCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 45677754 33444433211 2279999999998888887776632 67788889988766554443 333 34
Q ss_pred cEEEeccHHHHHHHhcCCCCCCCccEEEEechh
Q 014801 159 QIVVGTPGRILALARDKDLSLKNVRHFILDECD 191 (418)
Q Consensus 159 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h 191 (418)
.|++++.... ..++++...+.||+=+..
T Consensus 166 ~v~L~st~~~-----g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 166 KFIVLSVKAG-----GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CEEEEECCTT-----CCCCCCTTCSEEEECSCC
T ss_pred CEEEEehhhh-----cCCcCcccCCEEEEECCC
Confidence 5444443332 446777777777664443
No 426
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.17 E-value=9.3 Score=35.20 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999754
No 427
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.02 E-value=2.6 Score=33.91 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|+|||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36899999999997543
No 428
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.00 E-value=2.9 Score=39.50 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=30.0
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 125 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~ 125 (418)
.|.-++|.|++|+|||..++-.+...+...+ .+++++.--- -..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEESSS-CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEeccC-CHHHHHHHH
Confidence 3556899999999999765544444443312 1577776432 234454444
No 429
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=68.91 E-value=35 Score=34.28 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=60.0
Q ss_pred CchhhHHHHHhhhccCCCCCCeeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhc---CCCc--
Q 014801 85 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN---ECPQ-- 159 (418)
Q Consensus 85 sGKT~~~~l~~~~~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-- 159 (418)
+||... +..++..+...+ .++||.+.....++-+.+.+... ++++..++|+.+...+...+.. +...
T Consensus 555 s~K~~~-L~~lL~~~~~~g--~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~ 626 (800)
T 3mwy_W 555 SGKMVL-LDQLLTRLKKDG--HRVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDF 626 (800)
T ss_dssp CHHHHH-HHHHHHHHTTTT--CCEEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCC
T ss_pred ChHHHH-HHHHHHHHhhCC--CeEEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCce
Confidence 556533 333444443322 37999999998888777777654 7889999999887777666543 2223
Q ss_pred EEEeccHHHHHHHhcCCCCCCCccEEEEechh
Q 014801 160 IVVGTPGRILALARDKDLSLKNVRHFILDECD 191 (418)
Q Consensus 160 i~v~T~~~l~~~~~~~~~~~~~~~~iViDE~h 191 (418)
+++++.... ..++++...+.||+=+.+
T Consensus 627 v~LlSt~ag-----g~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 627 VFLLSTRAG-----GLGINLMTADTVVIFDSD 653 (800)
T ss_dssp CEEEEHHHH-----TTTCCCTTCCEEEESSCC
T ss_pred EEEEecccc-----cCCCCccccceEEEecCC
Confidence 444443333 456788888888775554
No 430
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.89 E-value=4.7 Score=28.70 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 314 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 314 (418)
++.+++++|.+-..+...+..|.+.|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4468999999999999999999999998888888743
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.87 E-value=2.4 Score=35.41 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|+-+.|.||.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999963
No 432
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=68.83 E-value=2.2 Score=34.03 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.6
Q ss_pred EEEEccCCCchhhHHH
Q 014801 77 VICQAKSGMGKTAVFV 92 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~ 92 (418)
+++.|+.|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997654
No 433
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=68.82 E-value=2.9 Score=34.36 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.|++|||||..+-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998654
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.76 E-value=2.7 Score=34.25 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhhHHHH
Q 014801 76 DVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l 93 (418)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999976543
No 435
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=68.75 E-value=3.1 Score=37.47 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 28 ~Ge~~~llGpsGsGKSTL--Lr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL--LRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHcC
Confidence 366689999999999973 3444433
No 436
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.65 E-value=2.9 Score=34.02 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhhHHHH
Q 014801 73 LGMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l 93 (418)
.+.-+++.|+.|||||..+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356689999999999986543
No 437
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=68.58 E-value=2.7 Score=33.89 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.|++|||||..+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 438
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=68.40 E-value=3.2 Score=37.15 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTL--LYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEECCCCchHHHH--HHHHhcC
Confidence 366689999999999973 3444433
No 439
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.20 E-value=2.2 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.-++++|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357899999999997643
No 440
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.07 E-value=4.6 Score=36.72 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=19.1
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCC
Q 014801 35 HSSGFRDFLLKPELLRAIVDSGFE 58 (418)
Q Consensus 35 ~~~~~~~~~l~~~~~~~l~~~~~~ 58 (418)
+...+...|+++..++.|.+.|+.
T Consensus 82 ~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 82 PIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp BGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred CHHHHHhCCCCHHHHHHHHHcCCC
Confidence 344577788999999999988876
No 441
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.07 E-value=8.3 Score=31.37 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=47.4
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhC--------CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----cc-CC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----GR-GI 343 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~~-G~ 343 (418)
.+.++||.+++++.+.++.+.+.+. +..+..++|+.+..... +.+ .+..+|+|+|. .+ .. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3468999999999999988877653 56777788876543321 112 24678999994 22 22 34
Q ss_pred CCCCCCEEEE
Q 014801 344 DIERVNIVIN 353 (418)
Q Consensus 344 d~~~~~~vi~ 353 (418)
++..++.+|.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5666777765
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.02 E-value=2.2 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-.++.|+||+|||.+.
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 443
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=67.99 E-value=2.1 Score=33.83 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=11.5
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+.-+++.|+.|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 444
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=67.91 E-value=3.3 Score=37.22 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 74 GMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
|.-+.+.||.|+|||+ ++-++.-+
T Consensus 37 Ge~~~llGpnGsGKST--LLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTT--TLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHH--HHHHHHTS
T ss_pred CCEEEEECCCCChHHH--HHHHHHcC
Confidence 6668999999999997 34444433
No 445
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.90 E-value=2.8 Score=33.29 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|+.|+|||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997654
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.50 E-value=1.7 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-+.|.|++|+|||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 447
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.34 E-value=3 Score=34.31 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
.+-+++.||+||||++.+-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34578899999999976543
No 448
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=67.27 E-value=2.5 Score=33.86 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.9
Q ss_pred EEEEccCCCchhhHHHH
Q 014801 77 VICQAKSGMGKTAVFVL 93 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l 93 (418)
+++.|+.|||||+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 449
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.16 E-value=41 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
..++++.||+|+|||..+-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35699999999999976443
No 450
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.11 E-value=3.1 Score=32.77 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
|..+++.|+.|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 6679999999999997544
No 451
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=66.99 E-value=4.1 Score=31.93 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhhHHHHHhhhcc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
-+.+.|+.|+|||... ..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 3678999999999753 3344433
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.94 E-value=4 Score=34.70 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhH
Q 014801 74 GMDVICQAKSGMGKTAV 90 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~ 90 (418)
|.-+.+.||.|+|||+.
T Consensus 30 Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp SSEEEEECCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 66789999999999973
No 453
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.93 E-value=4 Score=38.10 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997654
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.91 E-value=3.2 Score=34.41 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
+..+++.|++|||||..+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.88 E-value=3 Score=34.03 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=66.88 E-value=3.3 Score=33.87 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhhHHH
Q 014801 74 GMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~ 92 (418)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999997653
No 457
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=66.87 E-value=14 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=46.5
Q ss_pred HhhcCCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec
Q 014801 274 LDALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 337 (418)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 337 (418)
+....+.+++|.++++..|...++.+.. .|+.+.++.|+++...+.... .++|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 4455677899999999999988777654 589999999999987766653 378999995
No 458
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=66.84 E-value=2.8 Score=37.33 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|.-+.+.||.|+|||+ ++-++.-+.
T Consensus 25 ~Ge~~~llGpnGsGKST--LLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTL--FLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHH--HHHHHHTSS
T ss_pred CCCEEEEECCCCccHHH--HHHHHHcCC
Confidence 36678999999999997 344454443
No 459
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=66.54 E-value=3.6 Score=37.02 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTT--LRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEECCCCcHHHHH--HHHHHcC
Confidence 366789999999999973 4444433
No 460
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.51 E-value=3.7 Score=36.62 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchhhHHHHHhh
Q 014801 75 MDVICQAKSGMGKTAVFVLSTL 96 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~l~~~ 96 (418)
.-+.|.||+|+|||..+...+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999976544333
No 461
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.49 E-value=3.3 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
...+++.||.|+|||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 462
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.42 E-value=4.4 Score=39.28 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.3
Q ss_pred hhhcCCcEEEEccCCCchhhHH
Q 014801 70 QAILGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 70 ~~~~~~~~~v~~~tGsGKT~~~ 91 (418)
.+..+..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3456889999999999999754
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.42 E-value=2.9 Score=35.53 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|+-+.|.||.|+|||.. +.++.-+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI--AKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhccC
Confidence 367799999999999973 34444433
No 464
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=66.30 E-value=5.1 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 313 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 313 (418)
+..+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 347899999999999999999999999888787763
No 465
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=66.02 E-value=4.6 Score=38.93 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.3
Q ss_pred hcCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
..|+-+.+.||+|+|||.. +.++..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTl--l~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTI--ANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 3477899999999999974 34444443
No 466
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=65.95 E-value=3.2 Score=33.31 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+.|.|++|||||.++-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 467
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=65.92 E-value=3.6 Score=36.81 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-+.+.||+|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4789999999999754
No 468
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=65.61 E-value=4.9 Score=28.38 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 313 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 313 (418)
++.+++++|.+-..+...+..|.+.|++...+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 346899999998899999999999999888777763
No 469
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.54 E-value=3.5 Score=34.77 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhhHH
Q 014801 73 LGMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~ 91 (418)
.+..+.|.||+|||||.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566899999999999754
No 470
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=65.25 E-value=6 Score=35.71 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHhHHhhh---cCCcEEEEccCCCchhhHHH
Q 014801 65 HECIPQAI---LGMDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 65 ~~~~~~~~---~~~~~~v~~~tGsGKT~~~~ 92 (418)
.++++.+. .|+.+.|.+|+|+|||..+.
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 45555544 48899999999999997653
No 471
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=65.21 E-value=5 Score=28.18 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHhCCCCeEEecCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 313 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 313 (418)
+..+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 346899999999899999999999999888887763
No 472
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.99 E-value=8.9 Score=31.82 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=47.4
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc----cc---CCCCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----GR---GIDIE 346 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l----~~---G~d~~ 346 (418)
+.++||.+++++.+.++.+.+.+. +..+..++++. ...........+..+|+|+|. .+ .. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA---VAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH---HHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc---cHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999998888765 45555555431 111112223356778999993 22 12 46777
Q ss_pred CCCEEEEec
Q 014801 347 RVNIVINYD 355 (418)
Q Consensus 347 ~~~~vi~~~ 355 (418)
++..+|.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888887543
No 473
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.72 E-value=2.1 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
..+++.|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999997643
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.65 E-value=3.7 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.1
Q ss_pred EEEEccCCCchhhHHHH
Q 014801 77 VICQAKSGMGKTAVFVL 93 (418)
Q Consensus 77 ~~v~~~tGsGKT~~~~l 93 (418)
+.+.|+.|||||+++-.
T Consensus 15 IgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999986543
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=64.60 E-value=3.6 Score=33.91 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
.+++.|+.|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999997654
No 476
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=64.45 E-value=3.6 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
.-+.+.|+.|+|||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44889999999999754
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.30 E-value=3.8 Score=33.23 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhhHH
Q 014801 75 MDVICQAKSGMGKTAVF 91 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~ 91 (418)
.-.+|.||+|+|||.+.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34789999999999754
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.06 E-value=3.5 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|.-+.|.||.|+|||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 366789999999999973
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.04 E-value=4.4 Score=35.17 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhhHHHHHh
Q 014801 76 DVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~ 95 (418)
-+++.+++|+|||..+...+
T Consensus 100 vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999997654433
No 480
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.86 E-value=4.4 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhhHHHHHhhhcc
Q 014801 76 DVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.++++++.|+|||+++.-.+....
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467789999999987654443333
No 481
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.85 E-value=9.9 Score=37.28 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=48.9
Q ss_pred eeEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEE
Q 014801 106 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHF 185 (418)
Q Consensus 106 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 185 (418)
.++||+||++.-++.+++.+++. ++++..++|. ........+.++..+|+|+|. .+ ...+++. +++|
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-v~-----e~GIDip-v~~V 477 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-IS-----EMGANFG-ASRV 477 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-GG-----GTTCCCC-CSEE
T ss_pred CCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-hh-----hcceeeC-CcEE
Confidence 37999999999999888877664 7889999985 333334445667789999993 22 2356677 7776
Q ss_pred E
Q 014801 186 I 186 (418)
Q Consensus 186 V 186 (418)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=63.60 E-value=3.1 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhhHHH
Q 014801 75 MDVICQAKSGMGKTAVFV 92 (418)
Q Consensus 75 ~~~~v~~~tGsGKT~~~~ 92 (418)
.-+.|.|+.|||||+++-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997543
No 483
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=63.54 E-value=3.7 Score=35.48 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhhHH
Q 014801 76 DVICQAKSGMGKTAVF 91 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~ 91 (418)
-+.|.|++|+|||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 484
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.49 E-value=3.6 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|.-+.+.||.|+|||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367789999999999974
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=63.02 E-value=4.8 Score=42.99 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccCC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 101 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~~ 101 (418)
.|+.+.++|+||+|||.. +.++..+..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL--~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTV--VALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSH--HHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHH--HHHHhcCcc
Confidence 478899999999999974 334444443
No 486
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=62.79 E-value=4.4 Score=39.08 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|+-+.+.||+|+|||.. +.++..+.
T Consensus 368 ~G~~~~ivG~sGsGKSTL--l~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTI--ASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHH--HHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhhcc
Confidence 477899999999999974 34444433
No 487
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=62.71 E-value=2.9 Score=37.32 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 30 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTF--MRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHH--HHHHHTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 366789999999999973 4444433
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=62.58 E-value=3.7 Score=34.34 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhhHH
Q 014801 74 GMDVICQAKSGMGKTAVF 91 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~ 91 (418)
+.-+.|.||.|||||+.+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445789999999999754
No 489
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.45 E-value=22 Score=31.65 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHh----CCCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-cc-----ccCCCCCC
Q 014801 278 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIER 347 (418)
Q Consensus 278 ~~~~~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l-----~~G~d~~~ 347 (418)
.+.++||.+++++.+.++.+.+.+ .+..+..++|+.+..+....+. ..+|+|+|. .+ ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999999988887765 3677888899888766554433 457999983 22 12344556
Q ss_pred CCEEEEec
Q 014801 348 VNIVINYD 355 (418)
Q Consensus 348 ~~~vi~~~ 355 (418)
++++|.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777533
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=62.41 E-value=4.6 Score=39.08 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|+-+.+.||+|+|||.. +.++..+.
T Consensus 380 ~G~~~~ivG~sGsGKSTl--l~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTI--VNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhcCc
Confidence 477899999999999974 34444443
No 491
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=62.35 E-value=3.7 Score=34.71 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhcc
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQT 99 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~ 99 (418)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 30 ~Ge~~~l~G~nGsGKSTL--l~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL--LDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 366789999999999973 3444443
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.08 E-value=3.4 Score=36.25 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=17.7
Q ss_pred hcCCcEEEEccCCCchhhHHHHHh
Q 014801 72 ILGMDVICQAKSGMGKTAVFVLST 95 (418)
Q Consensus 72 ~~~~~~~v~~~tGsGKT~~~~l~~ 95 (418)
..+..+++.||+|+|||..+...+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 345567999999999997654433
No 493
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=61.96 E-value=4.2 Score=39.14 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhhH
Q 014801 73 LGMDVICQAKSGMGKTAV 90 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~ 90 (418)
.|+-+.+.||+|+|||..
T Consensus 366 ~G~~~~ivG~sGsGKSTl 383 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTL 383 (578)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 477799999999999973
No 494
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.96 E-value=11 Score=34.95 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred eEEEecCcHHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHhhcCCCcEEEeccHHHHHHHhcCCCCCCCccEEE
Q 014801 107 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 186 (418)
Q Consensus 107 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 186 (418)
++||++|++.-++++++.++.. ++++..+++... ......+.++..+|+|+|. . -...+++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-v-----~~~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-I-----SEMGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-G-----GGSSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-H-----HHhCcCCCC-CEEE
Confidence 7999999999999888877654 778888888655 2333445667789999993 1 134567777 6655
No 495
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=61.83 E-value=4.9 Score=34.82 Aligned_cols=20 Identities=20% Similarity=0.013 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhhHHHH
Q 014801 74 GMDVICQAKSGMGKTAVFVL 93 (418)
Q Consensus 74 ~~~~~v~~~tGsGKT~~~~l 93 (418)
++-+.+.++.|+|||..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567789999999975443
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=61.46 E-value=3.5 Score=36.61 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-.++.||+|+|||.+.-
T Consensus 25 ~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36899999999997643
No 497
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.32 E-value=3.6 Score=34.62 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhhHHH
Q 014801 76 DVICQAKSGMGKTAVFV 92 (418)
Q Consensus 76 ~~~v~~~tGsGKT~~~~ 92 (418)
-+.|.|+.|||||+++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 498
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.31 E-value=12 Score=35.36 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHhC----CCCeEEecCCCCHHHHHHHHHhhhcCCccEEEEec-ccc----cC-C-CCCC
Q 014801 279 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVG----RG-I-DIER 347 (418)
Q Consensus 279 ~~~~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~l~----~G-~-d~~~ 347 (418)
+.++||.+|+++.+..+.+.+.+. +..+..++|+.+...+...+. ...+|+|+|. .+. .| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999999888877664 889999999876554332221 2367999994 332 22 3 5666
Q ss_pred CCEEEEec
Q 014801 348 VNIVINYD 355 (418)
Q Consensus 348 ~~~vi~~~ 355 (418)
++.+|.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 77777543
No 499
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=61.28 E-value=4.7 Score=38.98 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCchhhHHHHHhhhccC
Q 014801 73 LGMDVICQAKSGMGKTAVFVLSTLQQTE 100 (418)
Q Consensus 73 ~~~~~~v~~~tGsGKT~~~~l~~~~~~~ 100 (418)
.|+-+.+.||+|+|||.. +.++..+.
T Consensus 369 ~G~~~~ivG~sGsGKSTL--l~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTV--LSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCc
Confidence 377899999999999974 34444443
No 500
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.24 E-value=5.3 Score=35.66 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCc--EEEEccCCCchhhHHH
Q 014801 74 GMD--VICQAKSGMGKTAVFV 92 (418)
Q Consensus 74 ~~~--~~v~~~tGsGKT~~~~ 92 (418)
|.+ ++.-|.||||||+++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 665 5779999999998753
Done!