BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014802
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54Y85|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum
GN=pole2 PE=3 SV=1
Length = 676
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 222/415 (53%), Gaps = 26/415 (6%)
Query: 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
M Q +K+I K + G+ ++ DA+ I++ + + ID LL + L++
Sbjct: 1 MDIQWKKQITKSFSLTGFSIKADAMKCIINRIKNEGYDITQLIDNLLKNLDKSQYLQTI- 59
Query: 61 IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAG-S 119
E ++ + +S A A++VIDAF P F +DS K F +
Sbjct: 60 ---EGCFKLIDTI---------NSSDAIEKEALKVIDAFNTPLFNFDSNSKQFIKSENFD 107
Query: 120 LPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSF--DVVNSEFGSCEISTIQSLVGQT 177
+HG +++K+ LYR R+L + QR R+ +FS P D + +E+ + I+ + SL+G T
Sbjct: 108 RSLHGSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQT--ITPLSSLLGNT 165
Query: 178 GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237
GR+ V+G ISQ+E+ FY+EDL +V+ID+SKAK G T N+I+ A GE +DG+F
Sbjct: 166 GRKHVLGTISQIEEDQFYIEDLNTNVKIDISKAKFEFGIVTINSIIQASGE-FIDGVFIA 224
Query: 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE 297
PP E+R ++LK L D FG KK +L EK ++ + LSD+WLD+E
Sbjct: 225 DKIQLPPTEERCETLKFLQNIDMFGERPQKKT-MEQLIKYEKEKEDNSILFLSDVWLDSE 283
Query: 298 EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357
VM +L+ + G++ + P + MGNF HP L + L+ F +L +I +P
Sbjct: 284 RVMERLDYLFGGYK--DCPPFAMILMGNFTEHP--LINGTQYQLKKYFNQLAMVIQKYPN 339
Query: 358 LKEHSRFLFIPGPDDAGPS--TVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
+ + ++F+F+PGP D S +LP+ + ++ IP + F++NPCR+ +
Sbjct: 340 IHQFTQFIFVPGPTDPTGSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRY 394
>sp|Q5ZKQ6|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2
SV=1
Length = 527
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 231/418 (55%), Gaps = 30/418 (7%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R+++ ++RG LR +A+ + + + E ++ ID ++D E + L +++I+
Sbjct: 7 RRRLGSAFRVRGLLLRAEAVKYLTETLESLNEEEFEDVIDKIIDAVEKQP-LSTNMIELS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHFYQHA-GSLP 121
+V EAA + S + + +I AF +P++ Y+ +K F + +LP
Sbjct: 66 TV----------EAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLP 115
Query: 122 I---HGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSC--EISTIQSLVGQ 176
+ G A KA L+R+R+ +L QR R + F+ P+ V++ + ++ T+++L+G
Sbjct: 116 VPNLFGTARDKAELFRERYSILQQRTHRHELFT-PAAVVIHPDDNRSKFQLKTVETLLGN 174
Query: 177 TGRR---WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG 233
T + V+G+I+QL++G ++LED V++DLSKA+ +G +TE+ V+AEG D
Sbjct: 175 TAKVREVIVLGMITQLKEGKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEG-WYEDE 233
Query: 234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGG-GTLKKEDTLRLADLEKRAANDMFVILSDI 292
+F V GFPP E + +FFGG + + + +L LE + MFV LSD+
Sbjct: 234 VFHVNAFGFPPTEPSATTRAFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDV 293
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352
WLD EV+ KL + G+ S P+ F F GNF S P + SL+ L +I
Sbjct: 294 WLDQAEVLEKLHTMFSGYSSAP--PTCFFFCGNFSSAP--YGKNQIQSLKGSLKALADII 349
Query: 353 AAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
+P + + SRF+F+PGP+D GP +VLPR L + +T+E ++ +P ++F++NPCR+ +
Sbjct: 350 CEYPSIHKSSRFVFVPGPEDPGPGSVLPRPPLAENITQEFRQLVPFSVFTTNPCRVQY 407
>sp|A7YWS7|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1
Length = 527
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/419 (32%), Positives = 224/419 (53%), Gaps = 32/419 (7%)
Query: 6 RKKIQKKMKIRGYGLRMDA---LDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIID 62
R + K+RG LR +A L E L +N + ED A++ ++D E + L S++I+
Sbjct: 7 RSRALSAFKLRGLMLRGEAVKYLTEALQSINEI-ELED-ALEKIIDAVEKQP-LSSNMIE 63
Query: 63 KESVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHF----YQH 116
+ V EAA + S S +I AF +P+F Y+S +K F +
Sbjct: 64 RSVV----------EAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTN 113
Query: 117 AGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVG 175
+ + G A KA L+R+R+ +L QR R + F+ P E GS ++ TI++L+G
Sbjct: 114 HPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLG 173
Query: 176 QT---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVD 232
T G V+G+I+QL++G F+LED ++++DLSKA+ +G +TE+ V+AEG D
Sbjct: 174 STSKIGDVIVLGMITQLKEGKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEG-WFED 232
Query: 233 GIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDT-LRLADLEKRAANDMFVILSD 291
+F V GFPP E + +FFGG + T +L LE + MFV +SD
Sbjct: 233 QVFHVNAFGFPPTEPSSTTRAYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISD 292
Query: 292 IWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQM 351
+WLD EV+ KL ++ G+ P+ F+ GNF S P + +L+ L +
Sbjct: 293 VWLDQVEVLEKLHIMFSGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKTLADI 348
Query: 352 IAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
I +P + + SRF+F+PGP+D G ++LPR + +T E ++ +P ++F++NPCR+ +
Sbjct: 349 ICGYPNIHQSSRFVFVPGPEDPGFGSILPRPPFAESITNEFRQRVPFSVFTTNPCRIQY 407
>sp|O54956|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2
Length = 527
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 219/418 (52%), Gaps = 30/418 (7%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R + K+RG LR +A + + + E +E + ++D E + L S++I++
Sbjct: 7 RSRTVSAFKLRGLLLRSEATKYLTEALQSVTELELEENLGKIIDAVEKQP-LSSNMIERS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHFY-----QHA 117
V EAA + S S +I AF +P+F Y+S +K F HA
Sbjct: 66 VV----------EAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHA 115
Query: 118 GSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVGQ 176
+ G A KA LY +R+ +L QR R + F+ P E GS ++ TI++L+G
Sbjct: 116 APT-LFGTARDKAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGS 174
Query: 177 T---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG 233
T G V+G+I+QL++G F+LED +V++DLSKA+ +G +TE V+AEG D
Sbjct: 175 TSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEG-WFEDQ 233
Query: 234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTL-RLADLEKRAANDMFVILSDI 292
+F GFPP E + +FFGG + T +L LE + MFVI+SD+
Sbjct: 234 VFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDV 293
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352
WLD +V+ K V+ G+ P+ F+ GNF S P + +L+ L +I
Sbjct: 294 WLDQVQVLEKFHVMFSGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKSLADII 349
Query: 353 AAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
+P + + SRF+F+PGP+D G ++LPR L + +T+E ++ +P ++F++NPCR+ +
Sbjct: 350 CEYPSIHQSSRFVFVPGPEDPGFGSILPRPPLAESITQEFRQRVPFSVFTTNPCRIQY 407
>sp|P56282|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2
Length = 527
Score = 211 bits (538), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 222/417 (53%), Gaps = 28/417 (6%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R + K+RG LR +A+ + + + E ++ ++ +++ E + L S++I++
Sbjct: 7 RSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQP-LSSNMIERS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHF----YQHAG 118
V EAA + S S +I AF +P+F Y+S +K F +
Sbjct: 66 VV----------EAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHP 115
Query: 119 SLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVGQT 177
+ + G KA ++R+R+ +L QR R + F+ P E GS ++ TI++L+G T
Sbjct: 116 APNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGST 175
Query: 178 ---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGI 234
G V+G+I+QL++G F+LED +V++DLSKA+ +G +TE V+AEG D +
Sbjct: 176 TKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEG-WFEDQV 234
Query: 235 FQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDT-LRLADLEKRAANDMFVILSDIW 293
F V GFPP E + +FFGG + T +L LE+ + MFV LSD+W
Sbjct: 235 FHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVW 294
Query: 294 LDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353
LD EV+ KL ++ G+ P+ F+ GNF S P + +L+ L +I
Sbjct: 295 LDQVEVLEKLRIMFAGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKTLADIIC 350
Query: 354 AHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
+P + + SRF+F+PGP+D G ++LPR L + +T E ++ +P ++F++NPCR+ +
Sbjct: 351 EYPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQY 407
>sp|O94263|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1
Length = 594
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 185/330 (56%), Gaps = 12/330 (3%)
Query: 89 NHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQ 148
N RV+DAF +PKF+YDS +K F S + ASA + RF +++ R+ R++
Sbjct: 135 NEKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNE 194
Query: 149 HFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLAASVEIDL 207
F PSF S+ G+ +++ I++L+G+ G +++ G+++ DG +LEDL + V++D+
Sbjct: 195 SFQTPSFSGSFSQTGTYQLTPIRNLLGRAGNTFLLFGLLTIAPDGTLWLEDLDSQVQLDV 254
Query: 208 SKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLK 267
S+A+ G F +V+ G+ L G+F V G PP+E RD SLK L D G
Sbjct: 255 SQAEQGFGLFCPGCLVLVNGQFLSSGLFLVFELGHPPIERRDASLKALNNLDILGLNMDA 314
Query: 268 KEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFC 327
K+ L L E+ + FV +S++ LDN + LE + +ES E VP + G+F
Sbjct: 315 KQLAL-LRHAEQAYQSQAFVCISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILCGSFM 373
Query: 328 SHPCNLSFH-SFSSLRLQ--FGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPS---TVLPR 381
S +FH S SS++ + F KL + P++ E ++F+F+PGP+D + +++P+
Sbjct: 374 SS----AFHNSGSSIQYKEGFNKLAASLEKFPKICEKTKFIFVPGPNDPWTTNGISLMPK 429
Query: 382 CALPKYLTEELQKYIPNAIFSSNPCRLNFL 411
++P + +Q+ + IF+SNPCR+ F
Sbjct: 430 HSIPLHFVNRIQRVCKHTIFASNPCRIIFF 459
>sp|P0CN24|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DPB2 PE=3 SV=1
Length = 541
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 9/333 (2%)
Query: 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLF 141
D + S V+D+F +P RYD ++ F Q + G+AS+++A R+R+ ++
Sbjct: 87 ADPSEVNVESHFSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIK 146
Query: 142 QRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLA 200
+ + R+++F+ P+ + ++++I++L+G+ G+ +++ G++++ E+G LED
Sbjct: 147 EIILRNENFTPPAIGG-HDRANYLKLTSIRNLLGRAGQLFLLFGMLARNEEGKLCLEDGE 205
Query: 201 ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDF 260
+ V +D+ A G FTE +V+ EGE V+ +V+ G PP E R+ + L DF
Sbjct: 206 SRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDF 265
Query: 261 FGGG--TLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGF-ESVEVVP 317
GGG +LK+E L + FVILSD+WLD+ M L + +G+ + E P
Sbjct: 266 LGGGAVSLKEEQKYNPTVLANTQIS--FVILSDVWLDHPRTMPALRQMFEGYANTAEYRP 323
Query: 318 SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377
+FV GNFC F L +++ + P L S F+F+PGP D ST
Sbjct: 324 MVFVLCGNFCQGGWE-GQEGLKRYSRGFNSLAELLQSIPLLHS-SHFVFVPGPSDPWSST 381
Query: 378 VLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
LPR +LP T L IPNA F SNPCRL +
Sbjct: 382 TLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKY 414
>sp|P0CN25|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1
Length = 541
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 9/333 (2%)
Query: 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLF 141
D + S V+D+F +P RYD ++ F Q + G+AS+++A R+R+ ++
Sbjct: 87 ADPSEVNVESHFSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIK 146
Query: 142 QRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLA 200
+ + R+++F+ P+ + ++++I++L+G+ G+ +++ G++++ E+G LED
Sbjct: 147 EIILRNENFTPPAIGG-HDRANYLKLTSIRNLLGRAGQLFLLFGMLARNEEGKLCLEDGE 205
Query: 201 ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDF 260
+ V +D+ A G FTE +V+ EGE V+ +V+ G PP E R+ + L DF
Sbjct: 206 SRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDF 265
Query: 261 FGGG--TLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGF-ESVEVVP 317
GGG +LK+E L + FVILSD+WLD+ M L + +G+ + E P
Sbjct: 266 LGGGAVSLKEEQKYNPTVLANTQIS--FVILSDVWLDHPRTMPALRQMFEGYANTAEYRP 323
Query: 318 SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377
+FV GNFC F L +++ + P L S F+F+PGP D ST
Sbjct: 324 MVFVLCGNFCQGGWE-GQEGLKRYSRGFNSLAELLQSIPLLHS-SHFVFVPGPSDPWSST 381
Query: 378 VLPRCALPKYLTEELQKYIPNAIFSSNPCRLNF 410
LPR +LP T L IPNA F SNPCRL +
Sbjct: 382 TLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKY 414
>sp|Q6FSK8|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB2 PE=3 SV=1
Length = 719
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 176/365 (48%), Gaps = 49/365 (13%)
Query: 94 RVIDAFLVPKFRYDSIKKH-FYQ----HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQ 148
R+I+ KF Y+ +K+ FYQ S+ A AK L+R R+ L R+ R++
Sbjct: 198 RIINTTDQKKFSYNPVKRQIFYQPPKDQLKSVLKIPNAQAKTDLFRTRYFLTRDRLLRNE 257
Query: 149 HF--SRPSFDVVNSEF---------------GSCEISTIQSLVGQTGRRW-VMGVISQLE 190
F S +F+ ++S I+ I++L+G+ G+ + ++GV+
Sbjct: 258 SFQSSHDTFNPLSSMIQLKNNINNNNQDDTPTGLSITQIKNLLGRDGQNFLILGVLKMNP 317
Query: 191 DGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEMLVDG-IFQVITCGFPPLEDR 248
G + LED + S++ID+S+ + G F+ IV+AEG G F V + FPP E R
Sbjct: 318 KGQWSLEDASGSIDIDISQTLPSPGLFYIPGAIVLAEGIYYTVGHTFAVTSMTFPPGERR 377
Query: 249 DQSLKLLAGYDFFG-GGT--------LKKEDTLRLADLEKRAANDMFVIL-SDIWLDNEE 298
D++L + D G GT L E +RL LE+ + FV+L D++LD++
Sbjct: 378 DKTLDHIGNLDLLGIHGTEKSSYIPRLDNEIKIRLHLLEQDLTHQKFVLLGGDLFLDDQH 437
Query: 299 VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSF-----HSFSSLRLQFGKLGQMIA 353
VM L+ V + + P++ V G+F S P + + S + + F L +M++
Sbjct: 438 VMDGLKKVFTKLD--QEAPTVIVLFGSFSSFPVHAAMSSKNISSTTEYKNNFDSLAEMLS 495
Query: 354 AHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC 406
+ H+ + IPGP D G + LP+ ++P + ++ + K N ++SNP
Sbjct: 496 QFENIINHTHVVLIPGPHDPWVSLCSLGANGSLPQSSIPTHFSKRMNKICKNITWASNPT 555
Query: 407 RLNFL 411
R+ +L
Sbjct: 556 RIAYL 560
>sp|Q19196|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans
GN=pole-2 PE=3 SV=2
Length = 534
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 200/423 (47%), Gaps = 56/423 (13%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEA--------IDLLLDQFEHESSLK 57
R++I K +I + L+ +A+ V F D + E I+LL Q +L+
Sbjct: 11 RREIVKTFQIHAFELKKEAVKLC---VKLFLDHDKETRKKWTNKMIELLKKQ-----TLQ 62
Query: 58 SSIIDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHA 117
SS+I +E + Q ++ D+G N V DAF + + +D+ +
Sbjct: 63 SSLISEELIR---DTFRQCKSKGTQDAGKLLN-----VFDAFSLQPYDFDADLRKMVLRK 114
Query: 118 GSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEI-----STIQS 172
+ ++S+ + R RF ++ QR R + N +F +CEI +QS
Sbjct: 115 EKTSLAADSSSFSHAARQRFFIVKQRAMR-------CASLKNFKFTTCEILGSSTKHLQS 167
Query: 173 LVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSK-AKITTGFFTENTIVVAEGEMLV 231
+V V+G+++Q + +++EDL+ SVE++ + K F E++I + EG
Sbjct: 168 VV-------VLGMLTQQKADCYHIEDLSGSVEVEFKEDTKFHHALFHEHSIAIFEG-TFE 219
Query: 232 DGIFQVITCGFPPLEDRDQSLK-LLAGYDFFGGG---TLKKEDTLRLADLEKRAANDMFV 287
+ + V P+E + + K L + ++FGG + D LR A L K+ + V
Sbjct: 220 NSVLTVNEVAMVPVESAEVTRKELSSNENWFGGDDKIAFRCSDRLRSA-LAKQEDTSL-V 277
Query: 288 ILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGK 347
LSD++LD+++VM + +L G++ + P VF GNFCS P + L F
Sbjct: 278 FLSDVFLDDKKVMKAVFKLLQGYK--DQPPVAIVFCGNFCSRPRQTD--TIDLLDRGFRW 333
Query: 348 LGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCR 407
L + + E ++F+F+PGPDD TVLPR LP L + + I + F+SNPCR
Sbjct: 334 LANQLTPLRKDYEKTQFIFVPGPDDPFVDTVLPRPHLPSLLFKHISPII-SCTFASNPCR 392
Query: 408 LNF 410
+ F
Sbjct: 393 IQF 395
>sp|P24482|DPB2_YEAST DNA polymerase epsilon subunit B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB2 PE=1 SV=3
Length = 689
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 178/370 (48%), Gaps = 57/370 (15%)
Query: 94 RVIDAFLVPKFRYDSIKKHFY------QH-----AGSLPIHGEASAKAALYRDRFLLLFQ 142
+VI+A +F Y+ K F Q+ AG LP + K ++ R+ L
Sbjct: 171 KVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLP---DIEDKVQMFLTRYYLTND 227
Query: 143 RVSRDQHFSRPS-FDVVNS---------------EFGSCEISTIQSLVGQTGRRWVM-GV 185
RV R+++F F+ ++S + S I+ I++L+G+ + +++ G+
Sbjct: 228 RVMRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGL 287
Query: 186 ISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEML-VDGIFQVITCGFP 243
+++ G++ LED + SVEID+S+ T G ++ +V+ EG V F V + P
Sbjct: 288 LNKNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLP 347
Query: 244 PLEDRDQSLKLLAGYDFFGG---------GTLKKEDTLRLADLEKRAANDMFVIL-SDIW 293
P E R+ +L+ + D G L K+ +RL LEK + FVIL ++++
Sbjct: 348 PGERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLF 407
Query: 294 LDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPC-----NLSFHSFSSLRLQFGKL 348
LD+ ++M L +L + P+L ++ G+F S P + + S + + F L
Sbjct: 408 LDDLKIMTALSKILQKLN--DDPPTLLIWQGSFTSVPVFASMSSRNISSSTQFKNNFDAL 465
Query: 349 GQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAIF 401
+++ L E++ +FIPGP+D G S LP+ +P T+++ K N ++
Sbjct: 466 ATLLSRFDNLTENTTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKVCKNVVW 525
Query: 402 SSNPCRLNFL 411
SSNP R+ +L
Sbjct: 526 SSNPTRIAYL 535
>sp|Q6BQR8|DPB2_DEBHA DNA polymerase epsilon subunit B OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB2 PE=3 SV=1
Length = 669
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 179/382 (46%), Gaps = 70/382 (18%)
Query: 94 RVIDAFLVPKFRYDSIKKH--FYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFS 151
+VI+ P ++YD +K F + + ++ + +R+ L+ R+SR+++F
Sbjct: 141 KVINPDEQPNYKYDKHRKQLSFIPSTNAKRLANNLNSNVDYFNNRYHLISDRLSRNENFQ 200
Query: 152 RPSFDVVNSEF-------GSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLAASV 203
+PSF ++S + EI+ I++++G+ G ++++ G++S+ + F LED +
Sbjct: 201 KPSFSSISSISKSLSHNNKTNEITLIKNVLGRDGSKFILFGLLSKNANDDFILEDSTDHI 260
Query: 204 EIDLSKAKITTG-FFTENTIVVAEG-----------EMLVDGIFQVITCGFPPLEDRDQS 251
E++L++A T G F+ V+ EG ++ G F V G PP E R+ S
Sbjct: 261 ELNLTQAYKTEGSFYCPGMFVIVEGIYSASGGSMSNANVIGGCFHVSNIGHPPAERRELS 320
Query: 252 LKLLAGYDFFG-----------------GGTLKKEDTLRLADLEKRAANDMFVIL-SDIW 293
++ DF G +LKK +L LEK N +IL SD +
Sbjct: 321 MENYGNLDFMGINRDNDTNNNDNHILRVNKSLKK----KLVSLEKTLVNHKLIILGSDCF 376
Query: 294 LDNEEVM-------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSL----- 341
LD+ +++ GK+E L E+ + P + V +G+F S+P + S +++
Sbjct: 377 LDDLKILDGIKKLFGKIESSLIDDETNQ--PLVIVLIGSFTSNPLTPTNSSVANVSNTEN 434
Query: 342 -RLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST---------VLPRCALPKYLTEE 391
+ F L +++ P + + + IPG +D S+ P+ ++PK T
Sbjct: 435 YKSNFDNLSNILSNFPNIVQKVKIALIPGINDPWQSSHSLGGSNLNAFPQRSIPKIFTNR 494
Query: 392 LQKYIP--NAIFSSNPCRLNFL 411
L++ +P N I NP R+N+L
Sbjct: 495 LERLLPKGNLIAGWNPLRINYL 516
>sp|Q6CPH8|DPB2_KLULA DNA polymerase epsilon subunit B OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB2 PE=3 SV=1
Length = 710
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 168/372 (45%), Gaps = 56/372 (15%)
Query: 94 RVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGE-----------ASAKAALYRDRFLLLFQ 142
+VIDAF F YD K+ + + +K +L+ R+ ++
Sbjct: 186 KVIDAFNQQTFTYDHTKRQYIYVPRPKEVEKNMLSIAKLKLPNVESKVSLFTTRYHIIKD 245
Query: 143 RVSRDQHFSRPS-FDVVNS--EFGS---------------CEISTIQSLVGQTGRRWVM- 183
+V R++ F F+ ++S E G +I+ I++L+G G+ +++
Sbjct: 246 KVLRNEKFQNNDIFNPLSSIIEMGKHMNESDVSPLNSASYMKITQIKNLLGHDGKNFLLL 305
Query: 184 GVISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEG-EMLVDGIFQVITCG 241
G++ Q G++ LED + S+E+ L +A T G ++ IV+ EG F V +
Sbjct: 306 GLLDQNSKGNWSLEDPSGSIELHLQQAIPTKGTYYVPGCIVLVEGIYYTASNTFVVSSIT 365
Query: 242 FPPLEDRDQSLKLLAGYDFFGG---------GTLKKEDTLRLADLEKRAANDMFVIL-SD 291
PP E R+ +++ + D G L K+ +RL LE+ +++ FVIL D
Sbjct: 366 HPPGEKREDTIEAIGNLDLLGAYNPSNENYVARLDKDLKIRLHYLEQELSDNKFVILGGD 425
Query: 292 IWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFS-----SLRLQFG 346
I+LD M L+ D + P VF G+F S P + S ++ + S + F
Sbjct: 426 IYLDEMTTMDGLKKTFDKLTTDP--PVAIVFNGSFVSVPVHPSLNAKNVSATVSYKNNFD 483
Query: 347 KLGQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNA 399
L +++ + L + +FIPGP+D G +T+ P+ +P T+++ +
Sbjct: 484 ALATLLSNYENLINDTHMIFIPGPNDPWTSMVGLGTTTMWPQKIIPSSFTQKMSRICRKV 543
Query: 400 IFSSNPCRLNFL 411
+ SNP R+ +L
Sbjct: 544 HWGSNPLRIAYL 555
>sp|Q758V1|DPB2_ASHGO DNA polymerase epsilon subunit B OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB2
PE=3 SV=1
Length = 677
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 169/371 (45%), Gaps = 57/371 (15%)
Query: 94 RVIDAFLVPKFRYDSIKKHF----YQHAGSLPIHG-----EASAKAALYRDRFLLLFQRV 144
+VID F +F YD K+ + + + + P+ A A + R+ L+ RV
Sbjct: 153 KVIDTFSQQQFTYDVTKRRYRLVQQRESAAGPLSTLLRIPSLEANLAQFPTRYHLVRDRV 212
Query: 145 SRDQHFSRPSFDVVN-------------------SEFGSCEISTIQSLVGQTGRRWVM-G 184
R+ F + DV N + I+ I++L+G+ G+ +++ G
Sbjct: 213 LRNASFQ--NDDVYNPLSSMQQLQQQLDAGGAPLASTAYMSITQIKNLLGRDGKNFLLLG 270
Query: 185 VISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEMLVDG-IFQVITCGF 242
+I + G + LED + S+EID+S+ T G ++ IV+AEG G F+V +
Sbjct: 271 LIRKDSKGFWSLEDPSGSIEIDISETYPTKGTYYVPGCIVLAEGIYSSAGNRFRVSSITH 330
Query: 243 PPLEDRDQSLKLLAGYDFFG--GGT-------LKKEDTLRLADLEKRAANDMFVILS-DI 292
PP E R+ L+ + D G G + L KE +RL LEK + FV L +I
Sbjct: 331 PPGERREAFLEAIGNLDLLGIHGPSNESYISRLDKELKIRLHYLEKELTDHRFVFLGGNI 390
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPC-----NLSFHSFSSLRLQFGK 347
+LD+ L + D E P++ V G+F S P + S S ++ R F
Sbjct: 391 FLDDTMTETALAKLFDVLEHDP--PTVLVLPGSFTSTPIYPSSDSKSSSSTAAYRANFDA 448
Query: 348 LGQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAI 400
L ++++ + RL + F+FIPG +D G + LP+ +P ++ + + +
Sbjct: 449 LAKLLSKYERLINETTFVFIPGDNDPWGSMAYLGVAGTLPQHPIPGDFVTKVNRICKHVV 508
Query: 401 FSSNPCRLNFL 411
+ SNP R+ +L
Sbjct: 509 WGSNPTRIAYL 519
>sp|Q6C030|DPB2_YARLI DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB2 PE=3 SV=1
Length = 652
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 150/347 (43%), Gaps = 48/347 (13%)
Query: 94 RVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRP 153
+VI AF P F Y++ ++ F + + A + + ++ R+ L++ R+ R
Sbjct: 142 KVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR------- 194
Query: 154 SFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKA-KI 212
N + +I++I+SL+G+ G + G++S+ + L+D + + L+ K
Sbjct: 195 -----NDDTTDLKITSIRSLIGRQGEFSIFGMLSKNPEQKICLQDDTGRILLILAAGCKP 249
Query: 213 TTG-FFTENTIVVAEGEMLVDG---IFQVITCGFPPLEDRDQSLKLLAGYDFFG------ 262
G ++ E + V+ G + G +F VIT G P E R +++ D+ G
Sbjct: 250 DPGVYYPEGSFVICNGRYMKSGDAEVFVVITMGPPVAEKRQETITAYGNMDYLGLHGNPH 309
Query: 263 GGTLKKEDTLRLADL---EKRAANDMFVIL-SDIWLDNEEVMGKLEVVLDGFE-----SV 313
G +++ + A + EKR + ++ D++LDN + L+ V E S
Sbjct: 310 GSVVRRIERQVEASMLAEEKRLVDQKVIVFGGDMYLDNPLTLKALQKVFSTIELEFQDSG 369
Query: 314 EVVPSLFVFMGNFCS--HPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPD 371
P VF G+F S P +L F L F + +I + +F+PG
Sbjct: 370 TKKPLAMVFSGDFTSQYQPPHLYKKGFDKLEELFKEFSSIITG-------VKIIFVPGQR 422
Query: 372 DAGPST------VLPRCALPKYLTEELQKYIPNAI-FSSNPCRLNFL 411
D +T V+P LP + + + + SSNPCR+ +L
Sbjct: 423 DPWTNTFPTQNAVVPLQPLPTTMINRVARLCGEDVSMSSNPCRMAYL 469
>sp|A1WRJ3|MUTS_VEREI DNA mismatch repair protein MutS OS=Verminephrobacter eiseniae
(strain EF01-2) GN=mutS PE=3 SV=1
Length = 871
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 325 NFCSHPC---NLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPR 381
F S PC H RL G IA H RL ++R I GP+ G ST + +
Sbjct: 583 QFVSEPCIEIEGGRHPVVEARLAETASGSFIANHTRLNANTRMQLITGPNMGGKSTYMRQ 642
Query: 382 CALPKYLTEELQKYIPNAIFSSNPCRLN 409
AL L + ++P ++ CRL
Sbjct: 643 VAL-IVLLASIGSHVP-----ASSCRLG 664
>sp|B4R8T7|ISPH_PHEZH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Phenylobacterium zucineum (strain HLK1) GN=ispH PE=3
SV=1
Length = 314
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 173 LVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVD 232
L+G G V+G + QL +G L + A + F T+ T+ V + +V+
Sbjct: 124 LIGHAGHPEVVGTMGQLPEGAVALIETVADAMAFQPRDPANVAFVTQTTLSVDDTAEIVE 183
Query: 233 GI---FQVITCGFPPLED-------RDQSLKLLAGYD--FFGGGTLKKEDTLRLADLEKR 280
+ F I P ED R +++K +A G+ +++RLA++ +R
Sbjct: 184 ALRARFPAIAA--PHKEDICYATTNRQEAVKAIAAKAQVLVVLGSANSSNSVRLAEVGRR 241
Query: 281 AANDMFVI-----LSDIWLDNEEVMG 301
A ++I L WL+ E +G
Sbjct: 242 AGARAYLIDDAEGLDFTWLEGVETVG 267
>sp|Q7NUG7|KUP1_CHRVO Probable potassium transport system protein kup 1
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=kup1 PE=3 SV=1
Length = 640
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 300 MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ--MIAAHPR 357
+G + + L G E+ L+ MG+F + P L+++ + L LGQ ++ AHP+
Sbjct: 234 LGAVVLCLTGAEA------LYADMGHFGARPIRLAWYGLALPALILSYLGQGALLLAHPQ 287
Query: 358 LKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFS--SNPCRLNFLITVQ 415
L + +P + G +LP AL T + + A+FS +L F V+
Sbjct: 288 LSGRPFYSMVP---EWG---LLPMVALSTLATIVASQALITAVFSLTHQSAQLGFFPRVK 341
Query: 416 LNH 418
+ H
Sbjct: 342 VLH 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,881,173
Number of Sequences: 539616
Number of extensions: 6277760
Number of successful extensions: 15857
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15795
Number of HSP's gapped (non-prelim): 21
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)