Query 014802
Match_columns 418
No_of_seqs 163 out of 353
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3818 DNA polymerase epsilon 100.0 1E-95 2E-100 719.3 33.1 398 3-414 6-409 (525)
2 PRK04036 DNA polymerase II sma 100.0 6.4E-40 1.4E-44 344.1 29.9 343 7-413 2-379 (504)
3 PTZ00235 DNA polymerase epsilo 100.0 9.5E-37 2.1E-41 293.7 14.4 133 282-414 26-170 (291)
4 COG1311 HYS2 Archaeal DNA poly 99.9 7.8E-27 1.7E-31 236.3 14.9 250 116-414 91-358 (481)
5 KOG2732 DNA polymerase delta, 99.9 1.9E-21 4.2E-26 192.3 17.0 244 127-413 27-321 (435)
6 PF04042 DNA_pol_E_B: DNA poly 99.8 1.7E-21 3.6E-26 182.5 6.8 126 286-414 1-130 (209)
7 cd07387 MPP_PolD2_C PolD2 (DNA 99.7 4.3E-17 9.4E-22 157.1 11.0 124 285-413 1-144 (257)
8 KOG1625 DNA polymerase alpha-p 99.7 1.9E-15 4.1E-20 155.0 20.2 206 176-412 243-466 (600)
9 PF12213 Dpoe2NT: DNA polymera 99.5 5E-14 1.1E-18 110.0 8.2 70 3-73 3-73 (73)
10 cd07386 MPP_DNA_pol_II_small_a 99.5 1.2E-13 2.5E-18 132.7 11.9 122 286-413 1-130 (243)
11 COG5214 POL12 DNA polymerase a 99.0 1.7E-08 3.7E-13 100.7 17.3 204 178-410 203-430 (581)
12 PHA02546 47 endonuclease subun 98.0 4E-05 8.7E-10 77.4 11.1 116 285-413 2-123 (340)
13 cd07402 MPP_GpdQ Enterobacter 97.9 4E-05 8.7E-10 72.7 7.5 75 285-374 1-83 (240)
14 cd08165 MPP_MPPE1 human MPPE1 97.6 0.00027 5.8E-09 63.4 9.0 77 316-406 38-114 (156)
15 PRK11148 cyclic 3',5'-adenosin 97.6 0.00018 4E-09 70.2 7.2 75 284-373 15-97 (275)
16 cd07400 MPP_YydB Bacillus subt 97.5 0.00017 3.7E-09 62.9 6.2 74 286-373 1-80 (144)
17 cd07398 MPP_YbbF-LpxH Escheric 97.5 0.00019 4E-09 67.0 6.4 81 287-375 1-83 (217)
18 cd00840 MPP_Mre11_N Mre11 nucl 97.5 0.00036 7.9E-09 65.0 7.5 79 285-375 1-90 (223)
19 cd07396 MPP_Nbla03831 Homo sap 97.4 0.00033 7.1E-09 68.2 7.4 77 285-375 2-87 (267)
20 PRK05340 UDP-2,3-diacylglucosa 97.4 0.00057 1.2E-08 65.5 8.9 105 285-413 2-108 (241)
21 cd07385 MPP_YkuE_C Bacillus su 97.4 0.00043 9.4E-09 64.8 7.0 75 285-375 3-77 (223)
22 cd07391 MPP_PF1019 Pyrococcus 97.3 0.00057 1.2E-08 62.1 6.9 76 287-375 1-89 (172)
23 cd07395 MPP_CSTP1 Homo sapiens 97.3 0.00088 1.9E-08 64.7 8.2 85 283-375 4-100 (262)
24 cd04490 PolII_SU_OBF PolII_SU_ 97.2 0.003 6.5E-08 50.2 9.3 66 181-246 3-78 (79)
25 TIGR00619 sbcd exonuclease Sbc 97.2 0.0012 2.7E-08 63.9 8.4 80 285-375 2-89 (253)
26 PRK11340 phosphodiesterase Yae 97.2 0.00088 1.9E-08 65.5 7.1 77 284-375 50-126 (271)
27 TIGR01854 lipid_A_lpxH UDP-2,3 97.1 0.0021 4.6E-08 61.2 8.7 103 287-413 2-106 (231)
28 PF00149 Metallophos: Calcineu 97.1 0.0034 7.4E-08 53.6 9.3 75 285-375 2-79 (200)
29 PRK10966 exonuclease subunit S 97.1 0.0012 2.7E-08 68.3 7.4 81 285-375 2-88 (407)
30 COG0420 SbcD DNA repair exonuc 97.1 0.0012 2.7E-08 67.7 7.4 82 285-376 2-90 (390)
31 COG2908 Uncharacterized protei 97.1 0.0028 6E-08 60.4 9.0 104 287-413 1-106 (237)
32 cd07383 MPP_Dcr2 Saccharomyces 97.1 0.0024 5.2E-08 59.2 8.4 75 284-373 3-88 (199)
33 COG1409 Icc Predicted phosphoh 97.0 0.0018 3.9E-08 62.6 7.6 76 285-375 2-79 (301)
34 cd07384 MPP_Cdc1_like Saccharo 97.0 0.00086 1.9E-08 61.1 5.0 57 316-375 45-101 (171)
35 PRK09453 phosphodiesterase; Pr 97.0 0.0019 4E-08 59.1 7.1 76 285-375 2-77 (182)
36 cd07388 MPP_Tt1561 Thermus the 97.0 0.003 6.5E-08 60.2 8.2 70 284-373 5-74 (224)
37 TIGR03729 acc_ester putative p 96.9 0.0026 5.6E-08 60.8 7.3 72 285-374 1-74 (239)
38 cd07401 MPP_TMEM62_N Homo sapi 96.9 0.0029 6.2E-08 61.4 7.6 86 286-375 2-90 (256)
39 cd07399 MPP_YvnB Bacillus subt 96.9 0.0017 3.7E-08 61.2 5.6 80 285-375 2-83 (214)
40 TIGR00024 SbcD_rel_arch putati 96.9 0.0034 7.3E-08 59.9 7.5 78 284-375 15-103 (225)
41 TIGR00583 mre11 DNA repair pro 96.8 0.0038 8.3E-08 64.5 7.7 85 285-375 5-124 (405)
42 cd08166 MPP_Cdc1_like_1 unchar 96.8 0.0056 1.2E-07 57.0 8.1 59 316-381 42-100 (195)
43 cd07392 MPP_PAE1087 Pyrobaculu 96.8 0.0032 6.9E-08 56.9 6.4 65 286-374 1-65 (188)
44 COG1407 Predicted ICC-like pho 96.7 0.0062 1.3E-07 58.2 7.9 89 282-382 18-118 (235)
45 cd07379 MPP_239FB Homo sapiens 96.6 0.0063 1.4E-07 52.7 6.9 64 285-375 1-64 (135)
46 cd07393 MPP_DR1119 Deinococcus 96.6 0.006 1.3E-07 58.2 7.2 73 287-374 2-84 (232)
47 cd07390 MPP_AQ1575 Aquifex aeo 96.5 0.0069 1.5E-07 54.8 7.0 71 287-375 2-83 (168)
48 PF12850 Metallophos_2: Calcin 96.3 0.0067 1.5E-07 53.0 5.5 58 285-373 2-59 (156)
49 cd00841 MPP_YfcE Escherichia c 96.2 0.0095 2.1E-07 52.6 5.9 60 285-375 1-60 (155)
50 cd07404 MPP_MS158 Microscilla 96.0 0.0094 2E-07 53.4 4.6 67 286-373 1-67 (166)
51 cd08164 MPP_Ted1 Saccharomyces 95.7 0.073 1.6E-06 49.6 9.2 56 316-375 44-112 (193)
52 PHA02239 putative protein phos 95.6 0.042 9.2E-07 52.7 7.9 71 285-373 2-72 (235)
53 PF14582 Metallophos_3: Metall 95.5 0.037 8E-07 52.6 6.7 79 284-373 6-101 (255)
54 cd00838 MPP_superfamily metall 95.4 0.015 3.3E-07 48.2 3.6 70 287-373 1-70 (131)
55 PRK13254 cytochrome c-type bio 95.4 0.087 1.9E-06 47.0 8.5 62 178-241 51-120 (148)
56 TIGR00040 yfcE phosphoesterase 95.3 0.061 1.3E-06 47.8 7.4 63 285-374 2-64 (158)
57 PF03100 CcmE: CcmE; InterPro 95.3 0.13 2.7E-06 44.9 9.1 63 177-241 49-120 (131)
58 cd00839 MPP_PAPs purple acid p 95.2 0.049 1.1E-06 53.2 7.0 79 283-375 4-82 (294)
59 COG4186 Predicted phosphoester 94.8 0.075 1.6E-06 47.6 6.2 75 284-375 4-87 (186)
60 cd08163 MPP_Cdc1 Saccharomyces 94.7 0.11 2.3E-06 50.6 7.6 54 316-375 45-98 (257)
61 COG2129 Predicted phosphoester 94.7 0.12 2.6E-06 49.0 7.5 73 284-373 4-76 (226)
62 cd07394 MPP_Vps29 Homo sapiens 94.7 0.11 2.4E-06 47.6 7.2 62 286-374 2-65 (178)
63 cd07424 MPP_PrpA_PrpB PrpA and 94.0 0.15 3.2E-06 47.7 6.7 65 285-373 2-66 (207)
64 cd07425 MPP_Shelphs Shewanella 93.8 0.27 5.9E-06 46.1 8.1 74 287-374 1-80 (208)
65 cd07378 MPP_ACP5 Homo sapiens 93.5 0.19 4.2E-06 48.6 6.8 83 285-375 2-84 (277)
66 cd07397 MPP_DevT Myxococcus xa 93.4 0.23 5E-06 47.8 7.0 63 285-375 2-64 (238)
67 PRK13150 cytochrome c-type bio 93.3 0.31 6.7E-06 43.9 7.1 62 178-241 57-127 (159)
68 COG1408 Predicted phosphohydro 93.1 0.18 3.9E-06 49.8 5.9 75 284-375 45-119 (284)
69 PF01336 tRNA_anti-codon: OB-f 92.7 0.42 9.2E-06 36.3 6.4 50 181-230 2-58 (75)
70 PRK13165 cytochrome c-type bio 92.4 0.49 1.1E-05 42.7 7.1 62 178-241 57-127 (160)
71 cd07421 MPP_Rhilphs Rhilph pho 92.3 0.54 1.2E-05 46.7 7.9 74 285-374 3-80 (304)
72 PRK13159 cytochrome c-type bio 92.2 0.53 1.1E-05 42.2 7.1 61 178-241 51-120 (155)
73 COG2332 CcmE Cytochrome c-type 92.2 0.57 1.2E-05 41.5 7.0 63 177-241 50-121 (153)
74 PRK11439 pphA serine/threonine 92.1 0.24 5.2E-06 46.7 5.0 43 282-329 15-57 (218)
75 PRK00166 apaH diadenosine tetr 92.0 0.46 1E-05 46.7 7.1 66 286-373 3-68 (275)
76 cd07413 MPP_PA3087 Pseudomonas 91.6 0.53 1.2E-05 44.6 6.9 68 287-373 2-75 (222)
77 cd07422 MPP_ApaH Escherichia c 91.3 0.48 1E-05 46.1 6.4 65 287-373 2-66 (257)
78 cd00144 MPP_PPP_family phospho 91.0 0.66 1.4E-05 43.3 6.8 67 288-374 2-68 (225)
79 cd07423 MPP_PrpE Bacillus subt 90.9 0.8 1.7E-05 43.6 7.4 70 285-373 2-79 (234)
80 PF04076 BOF: Bacterial OB fol 90.4 2.3 5.1E-05 35.6 8.7 66 166-231 21-89 (103)
81 PRK09968 serine/threonine-spec 90.3 0.47 1E-05 44.9 5.1 68 282-373 13-80 (218)
82 KOG3662 Cell division control 90.3 1.1 2.3E-05 46.4 7.9 55 316-377 93-147 (410)
83 cd04489 ExoVII_LU_OBF ExoVII_L 89.8 1.9 4.1E-05 33.2 7.5 60 181-240 3-74 (78)
84 cd00844 MPP_Dbr1_N Dbr1 RNA la 88.5 1.6 3.4E-05 42.7 7.4 81 286-373 1-85 (262)
85 PLN02533 probable purple acid 88.1 0.86 1.9E-05 47.6 5.6 73 283-374 139-211 (427)
86 PRK05907 hypothetical protein; 87.9 0.47 1E-05 47.5 3.4 62 4-72 138-202 (311)
87 cd04478 RPA2_DBD_D RPA2_DBD_D: 87.8 3.2 6.9E-05 33.4 7.7 58 180-237 2-69 (95)
88 PRK13625 bis(5'-nucleosyl)-tet 87.7 1.9 4E-05 41.5 7.3 70 285-373 2-78 (245)
89 cd00842 MPP_ASMase acid sphing 86.9 2.4 5.3E-05 41.5 7.8 59 316-381 68-129 (296)
90 PRK08487 DNA polymerase III su 86.7 1.4 3E-05 44.2 6.1 61 4-72 139-199 (328)
91 PRK07914 hypothetical protein; 86.7 1.9 4.1E-05 43.1 7.0 60 4-71 132-192 (320)
92 TIGR00156 conserved hypothetic 86.6 2.6 5.6E-05 36.6 6.8 65 166-230 44-111 (126)
93 PRK05629 hypothetical protein; 85.9 2.3 4.9E-05 42.4 7.1 61 4-71 130-190 (318)
94 PRK06920 dnaE DNA polymerase I 85.0 9.8 0.00021 44.5 12.4 73 168-240 933-1020(1107)
95 COG0622 Predicted phosphoester 84.7 1.8 3.8E-05 39.6 5.2 64 285-375 3-66 (172)
96 PRK10053 hypothetical protein; 84.5 3.8 8.2E-05 35.8 6.8 65 166-230 48-115 (130)
97 COG3111 Periplasmic protein wi 84.3 5 0.00011 34.6 7.2 65 166-230 44-111 (128)
98 cd07403 MPP_TTHA0053 Thermus t 84.1 1.9 4.2E-05 37.1 5.0 31 288-326 2-32 (129)
99 PRK07452 DNA polymerase III su 84.1 2.2 4.7E-05 42.5 6.0 61 4-71 134-197 (326)
100 PRK05574 holA DNA polymerase I 84.0 2 4.3E-05 42.8 5.7 61 4-72 150-212 (340)
101 smart00156 PP2Ac Protein phosp 83.8 5 0.00011 39.3 8.2 73 283-374 27-99 (271)
102 cd04485 DnaE_OBF DnaE_OBF: A s 83.8 4.9 0.00011 30.6 6.7 47 194-240 23-74 (84)
103 TIGR00668 apaH bis(5'-nucleosy 83.3 3.4 7.4E-05 40.7 6.8 39 286-329 3-41 (279)
104 cd07416 MPP_PP2B PP2B, metallo 83.2 5.3 0.00011 39.9 8.2 73 283-374 42-114 (305)
105 cd04488 RecG_wedge_OBF RecG_we 82.4 3.5 7.7E-05 30.8 5.3 51 194-246 22-73 (75)
106 cd00845 MPP_UshA_N_like Escher 82.0 2.8 6E-05 39.9 5.6 45 285-331 2-52 (252)
107 PRK05673 dnaE DNA polymerase I 81.6 17 0.00036 42.8 12.6 123 168-325 966-1105(1135)
108 PRK06585 holA DNA polymerase I 81.6 5.5 0.00012 39.9 7.9 62 4-72 146-209 (343)
109 cd07419 MPP_Bsu1_C Arabidopsis 81.6 6 0.00013 39.6 8.0 73 284-373 48-126 (311)
110 cd07420 MPP_RdgC Drosophila me 81.2 6.5 0.00014 39.6 8.1 71 285-373 52-122 (321)
111 PRK07373 DNA polymerase III su 81.2 5.3 0.00011 42.1 7.7 61 180-240 283-357 (449)
112 cd07415 MPP_PP2A_PP4_PP6 PP2A, 81.1 5.1 0.00011 39.6 7.2 72 283-373 41-112 (285)
113 cd07414 MPP_PP1_PPKL PP1, PPKL 81.1 5.8 0.00013 39.4 7.6 73 283-374 49-121 (293)
114 cd04483 hOBFC1_like hOBFC1_lik 80.2 9.8 0.00021 31.0 7.5 49 182-230 2-76 (92)
115 TIGR01128 holA DNA polymerase 78.1 4.5 9.8E-05 39.4 5.8 63 4-72 115-177 (302)
116 PTZ00480 serine/threonine-prot 75.9 9.5 0.00021 38.4 7.4 73 283-374 58-130 (320)
117 PTZ00239 serine/threonine prot 74.8 11 0.00024 37.7 7.5 72 283-373 42-113 (303)
118 PRK06461 single-stranded DNA-b 74.4 22 0.00048 30.7 8.4 70 166-237 3-87 (129)
119 KOG0373 Serine/threonine speci 74.3 11 0.00023 36.0 6.7 71 284-373 46-116 (306)
120 PRK09087 hypothetical protein; 73.7 11 0.00023 35.8 6.9 65 5-73 158-222 (226)
121 PRK08084 DNA replication initi 72.8 12 0.00025 35.7 6.9 63 3-70 169-233 (235)
122 cd07418 MPP_PP7 PP7, metalloph 72.7 13 0.00028 38.3 7.6 72 284-374 66-138 (377)
123 cd04492 YhaM_OBF_like YhaM_OBF 72.4 7.6 0.00016 29.8 4.7 47 194-240 23-73 (83)
124 PRK06620 hypothetical protein; 71.3 11 0.00023 35.6 6.2 64 3-70 149-213 (214)
125 PRK06893 DNA replication initi 70.2 15 0.00032 34.8 6.9 64 2-70 162-227 (229)
126 COG1466 HolA DNA polymerase II 69.5 18 0.0004 36.3 7.8 63 4-72 144-206 (334)
127 PF13742 tRNA_anti_2: OB-fold 69.1 31 0.00067 28.3 7.8 71 170-240 11-97 (99)
128 PRK05642 DNA replication initi 68.7 16 0.00034 34.8 6.8 64 3-71 168-233 (234)
129 PF15072 DUF4539: Domain of un 68.6 11 0.00024 30.5 4.8 48 181-228 6-59 (86)
130 cd03524 RPA2_OBF_family RPA2_O 67.4 33 0.00071 24.7 7.1 38 193-230 20-60 (75)
131 cd07406 MPP_CG11883_N Drosophi 67.1 11 0.00023 36.4 5.4 30 300-330 23-52 (257)
132 cd07417 MPP_PP5_C PP5, C-termi 65.9 22 0.00048 35.7 7.5 70 284-373 60-131 (316)
133 cd04479 RPA3 RPA3: A subfamily 65.2 62 0.0013 26.7 8.9 58 178-239 15-74 (101)
134 cd04491 SoSSB_OBF SoSSB_OBF: A 61.8 27 0.00059 27.2 5.9 35 194-229 27-62 (82)
135 PRK07374 dnaE DNA polymerase I 61.8 23 0.00049 41.9 7.5 73 168-240 989-1077(1170)
136 PRK14086 dnaA chromosomal repl 61.1 28 0.0006 38.2 7.6 68 3-74 448-516 (617)
137 cd04482 RPA2_OBF_like RPA2_OBF 60.0 77 0.0017 25.6 8.4 61 181-241 2-72 (91)
138 cd07408 MPP_SA0022_N Staphyloc 57.8 19 0.00041 34.7 5.2 42 286-329 3-50 (257)
139 PTZ00244 serine/threonine-prot 57.4 28 0.00062 34.5 6.5 71 284-374 52-123 (294)
140 PRK07217 replication factor A; 56.4 85 0.0018 31.5 9.5 72 166-238 71-151 (311)
141 PRK12402 replication factor C 56.1 33 0.00072 33.8 6.8 60 4-71 188-247 (337)
142 PRK08402 replication factor A; 55.8 46 0.001 34.0 7.8 73 166-238 61-152 (355)
143 PRK08727 hypothetical protein; 55.7 40 0.00087 31.9 7.0 65 3-71 164-229 (233)
144 PRK00440 rfc replication facto 55.4 33 0.00071 33.5 6.6 60 4-71 165-224 (319)
145 KOG1432 Predicted DNA repair e 53.9 54 0.0012 33.4 7.6 81 282-375 52-148 (379)
146 PRK05672 dnaE2 error-prone DNA 53.0 33 0.00073 40.1 7.0 61 180-240 956-1028(1046)
147 PRK06826 dnaE DNA polymerase I 50.6 46 0.001 39.3 7.6 61 180-240 994-1069(1151)
148 PTZ00422 glideosome-associated 49.1 56 0.0012 33.9 7.2 81 285-373 28-108 (394)
149 COG0593 DnaA ATPase involved i 49.1 51 0.0011 34.4 6.9 68 4-75 247-315 (408)
150 PRK10917 ATP-dependent DNA hel 48.5 60 0.0013 36.1 7.9 75 166-245 49-134 (681)
151 PRK13480 3'-5' exoribonuclease 47.8 81 0.0018 31.7 8.0 75 169-245 4-92 (314)
152 TIGR02397 dnaX_nterm DNA polym 46.0 60 0.0013 32.3 6.9 61 4-71 180-240 (355)
153 PRK06386 replication factor A; 45.0 1.3E+02 0.0028 30.8 9.0 65 166-237 106-186 (358)
154 cd04456 S1_IF1A_like S1_IF1A_l 45.0 99 0.0021 24.4 6.5 45 182-226 2-48 (78)
155 KOG3350 Uncharacterized conser 44.6 16 0.00035 33.7 2.2 59 17-75 9-69 (217)
156 PRK00149 dnaA chromosomal repl 43.2 74 0.0016 33.3 7.2 66 4-73 283-349 (450)
157 cd04320 AspRS_cyto_N AspRS_cyt 43.0 1.5E+02 0.0033 24.0 7.7 50 181-230 3-65 (102)
158 cd04321 ScAspRS_mt_like_N ScAs 42.9 1.5E+02 0.0033 23.3 7.5 51 180-230 2-61 (86)
159 TIGR00362 DnaA chromosomal rep 42.7 69 0.0015 32.9 6.9 66 4-73 271-337 (405)
160 cd05793 S1_IF1A S1_IF1A: Trans 42.2 1.1E+02 0.0025 24.0 6.4 46 182-227 2-49 (77)
161 PRK14970 DNA polymerase III su 40.9 1E+02 0.0022 31.1 7.7 61 4-71 171-231 (367)
162 PRK12422 chromosomal replicati 39.9 79 0.0017 33.3 6.8 69 4-73 274-343 (445)
163 cd04316 ND_PkAspRS_like_N ND_P 39.8 99 0.0022 25.5 6.2 53 178-230 12-75 (108)
164 PRK14955 DNA polymerase III su 39.4 69 0.0015 33.0 6.2 63 4-70 190-254 (397)
165 PRK07135 dnaE DNA polymerase I 39.4 63 0.0014 37.5 6.4 71 168-240 889-969 (973)
166 PRK05159 aspC aspartyl-tRNA sy 38.9 1.3E+02 0.0027 31.6 8.2 54 178-231 16-79 (437)
167 PRK14088 dnaA chromosomal repl 38.4 87 0.0019 32.9 6.8 67 3-73 265-332 (440)
168 COG1190 LysU Lysyl-tRNA synthe 38.2 64 0.0014 34.4 5.7 51 180-230 64-125 (502)
169 PRK07279 dnaE DNA polymerase I 38.0 79 0.0017 37.0 6.9 71 168-240 876-962 (1034)
170 cd04319 PhAsnRS_like_N PhAsnRS 37.8 1.1E+02 0.0025 24.8 6.2 51 180-230 2-61 (103)
171 COG1570 XseA Exonuclease VII, 37.5 1.3E+02 0.0028 31.7 7.7 69 170-238 15-94 (440)
172 smart00652 eIF1a eukaryotic tr 37.3 1.5E+02 0.0033 23.6 6.5 45 182-227 7-54 (83)
173 PRK14963 DNA polymerase III su 36.9 94 0.002 33.3 6.9 59 4-70 179-237 (504)
174 cd07410 MPP_CpdB_N Escherichia 35.4 48 0.001 32.1 4.1 29 300-330 29-58 (277)
175 PRK09419 bifunctional 2',3'-cy 35.3 49 0.0011 39.2 4.8 43 285-330 662-705 (1163)
176 KOG0372 Serine/threonine speci 35.0 1.1E+02 0.0025 29.7 6.3 72 283-373 42-113 (303)
177 PRK07211 replication factor A; 35.0 1.1E+02 0.0025 32.6 7.0 65 166-233 268-347 (485)
178 PF11657 Activator-TraM: Trans 34.6 54 0.0012 29.1 3.9 23 1-23 1-23 (144)
179 cd04322 LysRS_N LysRS_N: N-ter 34.5 2E+02 0.0043 23.6 7.2 51 180-230 2-63 (108)
180 cd04497 hPOT1_OB1_like hPOT1_O 34.2 1.4E+02 0.003 25.9 6.5 64 166-229 2-81 (138)
181 PF01176 eIF-1a: Translation i 33.8 1.3E+02 0.0029 22.6 5.5 46 182-227 5-52 (65)
182 PLN02502 lysyl-tRNA synthetase 33.4 3.8E+02 0.0083 29.1 10.9 51 180-230 111-174 (553)
183 PRK06305 DNA polymerase III su 33.3 1.1E+02 0.0025 32.1 6.8 60 4-70 184-243 (451)
184 cd04317 EcAspRS_like_N EcAspRS 33.2 1.3E+02 0.0028 25.8 6.1 51 180-230 17-75 (135)
185 PRK14962 DNA polymerase III su 33.1 1.2E+02 0.0025 32.4 6.8 61 4-71 180-240 (472)
186 COG5235 RFA2 Single-stranded D 33.1 2.6E+02 0.0057 26.5 8.2 68 180-247 69-145 (258)
187 TIGR00643 recG ATP-dependent D 33.0 1.6E+02 0.0035 32.4 8.1 62 167-230 23-94 (630)
188 PF13309 HTH_22: HTH domain 32.5 71 0.0015 24.1 3.8 35 1-35 21-55 (64)
189 TIGR03015 pepcterm_ATPase puta 32.2 1.6E+02 0.0034 27.9 7.1 67 4-74 196-267 (269)
190 TIGR00499 lysS_bact lysyl-tRNA 31.9 1.6E+02 0.0035 31.5 7.7 51 180-230 56-117 (496)
191 PRK15491 replication factor A; 31.3 1.2E+02 0.0027 31.1 6.5 64 166-229 56-136 (374)
192 PRK03932 asnC asparaginyl-tRNA 31.1 2E+02 0.0042 30.4 8.1 53 178-230 16-78 (450)
193 PRK00286 xseA exodeoxyribonucl 31.1 1.5E+02 0.0033 30.9 7.3 72 170-241 15-99 (438)
194 PRK01889 GTPase RsgA; Reviewed 30.9 3E+02 0.0065 27.9 9.2 46 182-227 29-79 (356)
195 PRK14087 dnaA chromosomal repl 30.7 1.6E+02 0.0034 31.1 7.3 65 4-73 278-348 (450)
196 PRK04012 translation initiatio 30.3 2.1E+02 0.0046 23.7 6.5 47 180-226 21-69 (100)
197 TIGR00617 rpa1 replication fac 30.2 94 0.002 34.1 5.7 66 164-229 295-378 (608)
198 KOG3416 Predicted nucleic acid 29.7 1.2E+02 0.0026 26.4 5.0 45 183-229 26-74 (134)
199 PLN03025 replication factor C 29.6 1.5E+02 0.0032 29.4 6.6 29 4-32 162-190 (319)
200 cd04323 AsnRS_cyto_like_N AsnR 29.3 2.5E+02 0.0054 21.8 6.7 50 181-230 3-60 (84)
201 PF06581 p31comet: Mad1 and Cd 29.1 94 0.002 30.3 4.8 68 316-383 137-221 (264)
202 PRK14954 DNA polymerase III su 28.7 1.3E+02 0.0028 33.3 6.4 30 4-33 190-219 (620)
203 cd04487 RecJ_OBF2_like RecJ_OB 28.6 2.7E+02 0.0059 21.4 7.9 60 181-240 2-70 (73)
204 KOG3770 Acid sphingomyelinase 28.3 2.2E+02 0.0047 31.1 7.8 78 304-387 198-276 (577)
205 KOG3035 Isoamyl acetate-hydrol 27.8 3E+02 0.0064 26.4 7.7 70 299-374 53-129 (245)
206 cd04100 Asp_Lys_Asn_RS_N Asp_L 27.5 2.5E+02 0.0053 21.8 6.4 50 181-230 3-61 (85)
207 PRK14961 DNA polymerase III su 27.5 1.7E+02 0.0036 29.8 6.6 61 4-71 182-242 (363)
208 TIGR03420 DnaA_homol_Hda DnaA 27.3 1.6E+02 0.0034 27.1 6.0 60 7-70 165-225 (226)
209 PF08661 Rep_fac-A_3: Replicat 27.3 3.6E+02 0.0077 22.3 9.0 64 177-244 17-85 (109)
210 KOG1378 Purple acid phosphatas 27.0 98 0.0021 32.7 4.8 76 282-375 146-222 (452)
211 PRK12366 replication factor A; 26.9 2.4E+02 0.0053 31.1 8.2 65 165-230 393-474 (637)
212 TIGR00237 xseA exodeoxyribonuc 26.7 1.9E+02 0.0042 30.2 7.1 64 178-241 18-93 (432)
213 PF07524 Bromo_TP: Bromodomain 26.3 2.7E+02 0.0059 21.3 6.3 31 4-34 7-38 (77)
214 PF11116 DUF2624: Protein of u 25.8 3.6E+02 0.0078 21.8 7.4 48 6-53 17-66 (85)
215 PF02084 Bindin: Bindin; Inte 25.4 1.1E+02 0.0023 29.3 4.3 65 17-81 98-168 (238)
216 PRK14953 DNA polymerase III su 24.9 1.9E+02 0.0042 30.8 6.8 60 4-70 182-241 (486)
217 TIGR00635 ruvB Holliday juncti 24.7 2.2E+02 0.0048 27.6 6.8 65 4-72 163-228 (305)
218 PRK06645 DNA polymerase III su 24.6 1.7E+02 0.0036 31.5 6.2 29 4-32 191-219 (507)
219 PRK13895 conjugal transfer pro 24.4 84 0.0018 27.8 3.2 57 1-57 1-65 (144)
220 PHA01513 mnt Mnt 24.3 2.8E+02 0.0061 22.3 5.9 35 1-35 12-46 (82)
221 cd04474 RPA1_DBD_A RPA1_DBD_A: 24.2 2.5E+02 0.0053 23.0 6.0 49 180-228 12-76 (104)
222 PRK14964 DNA polymerase III su 24.2 2E+02 0.0043 30.8 6.6 30 4-33 179-208 (491)
223 PF10451 Stn1: Telomere regula 24.1 2E+02 0.0043 28.0 6.2 64 181-245 70-149 (256)
224 PRK15491 replication factor A; 23.9 2.8E+02 0.006 28.6 7.5 67 165-233 274-356 (374)
225 PF13654 AAA_32: AAA domain; P 23.8 3E+02 0.0064 29.6 7.9 66 5-72 432-505 (509)
226 PRK09111 DNA polymerase III su 23.8 2.1E+02 0.0045 31.5 6.8 30 4-33 195-224 (598)
227 PRK08903 DnaA regulatory inact 23.6 2.4E+02 0.0051 26.1 6.5 60 7-71 164-224 (227)
228 COG2845 Uncharacterized protei 23.5 77 0.0017 32.0 3.1 36 337-375 157-192 (354)
229 TIGR00457 asnS asparaginyl-tRN 23.0 1.7E+02 0.0037 30.8 5.9 53 178-230 16-80 (453)
230 PRK12445 lysyl-tRNA synthetase 22.9 3.3E+02 0.0073 29.2 8.1 51 180-230 68-129 (505)
231 PRK07218 replication factor A; 22.8 4.7E+02 0.01 27.5 9.0 68 167-237 162-243 (423)
232 COG3390 Uncharacterized protei 22.8 2.4E+02 0.0052 26.2 6.0 61 165-229 36-108 (196)
233 KOG0371 Serine/threonine prote 22.8 2.2E+02 0.0049 28.0 6.0 71 284-373 60-130 (319)
234 PLN00208 translation initiatio 22.5 3.3E+02 0.0071 24.3 6.6 47 182-228 34-82 (145)
235 TIGR00523 eIF-1A eukaryotic/ar 21.7 3.5E+02 0.0075 22.4 6.3 45 181-225 20-66 (99)
236 KOG3108 Single-stranded DNA-bi 21.4 2.1E+02 0.0046 28.0 5.7 27 180-206 71-101 (265)
237 PRK14985 maltodextrin phosphor 21.3 3.9E+02 0.0085 30.4 8.4 52 316-372 567-618 (798)
238 cd08164 MPP_Ted1 Saccharomyces 20.7 3.5E+02 0.0076 25.2 6.8 20 274-293 36-55 (193)
239 KOG3818 DNA polymerase epsilon 20.6 92 0.002 32.8 3.1 46 18-63 1-49 (525)
240 PF03869 Arc: Arc-like DNA bin 20.3 1.3E+02 0.0028 21.6 3.0 34 1-34 11-44 (50)
241 smart00576 BTP Bromodomain tra 20.2 4.1E+02 0.009 20.5 7.2 31 4-34 7-38 (77)
No 1
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=100.00 E-value=1e-95 Score=719.27 Aligned_cols=398 Identities=28% Similarity=0.542 Sum_probs=369.4
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChH-HHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHhhhhc
Q 014802 3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAED-EAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAE 81 (418)
Q Consensus 3 ~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~-~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~~~~~~~~ 81 (418)
+.+|+.+...||+.|.+++++|..+|+++.......++ +|++++++.|+++ ++.+..+.++.+++++++|+..
T Consensus 6 ~~L~~~as~~fk~~G~l~R~~~ik~L~e~~~~~~~~er~~~i~~i~e~iq~q-~l~s~~~~r~~~~~avq~~~~s----- 79 (525)
T KOG3818|consen 6 DRLRELASFVFKLCGHLWRSEAIKLLVELALDWKKEERKKWINKIIELIQKQ-KLNSPHEEREAIEAAVQECSSS----- 79 (525)
T ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhh-ccCCchhhHHHHHHHHHHhhhc-----
Confidence 48999999999999999999999999998887655554 6999999999999 9999999999999999999863
Q ss_pred cCCCCCCCCCceEEecCCccCceeeecccccccc-cCCCCCccCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc-
Q 014802 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQ-HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVN- 159 (418)
Q Consensus 82 ~~~~~~~~~~~~~Vi~af~~P~~~yd~~~k~f~~-~~~~~~~~~~~~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~~~~- 159 (418)
+..+|+++|+|||||++|||.||+.+|+|+- ...++++++++++|++|||+||.+++||++||+.|++|..+.+.
T Consensus 80 ---g~~~~e~~F~vidAf~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~ 156 (525)
T KOG3818|consen 80 ---GTQDAEKYFNVIDAFSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRC 156 (525)
T ss_pred ---ccccHHHHHhhcchhcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchh
Confidence 4568899999999999999999999999974 55567999999999999999999999999999999998765544
Q ss_pred CCCCcccceeccccc-CCCCcEE-EEEEEEEccCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEE
Q 014802 160 SEFGSCEISTIQSLV-GQTGRRW-VMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237 (418)
Q Consensus 160 ~~~~~~~it~I~~Ll-g~~g~~~-vlGml~~~~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V 237 (418)
.+.++++||||++|+ |+.++.+ |+|||+|..+|+|+|||+||.|+||++++.++.|+|||||+|+|||.| .+|+|+|
T Consensus 157 ~q~~~fklt~ienLL~t~~~~~~lvLGlLTq~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~EG~f-~~~vf~V 235 (525)
T KOG3818|consen 157 AQLKKFKLTPIENLLSTRALQSFLVLGLLTQLKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVEGTF-ESGVFHV 235 (525)
T ss_pred hhccccceeEHHHhhccccccceeeeehhhhccCCcEEEeCCCCcEEEeecccccccceeccceEEEEeeee-ecceEEE
Confidence 456679999999999 6777665 899999999999999999999999999999999999999999999999 6799999
Q ss_pred EEecCCCCCCchhhhhhccCcccCCCCCC-chhhhHHHHHHHHhcCCCcEEEEEccccCcHHHHHHHHHHHhcccCCCCC
Q 014802 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTL-KKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVV 316 (418)
Q Consensus 238 ~~i~~Pp~e~r~~s~~~~~~ld~~G~~~~-~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~ 316 (418)
+++|+||.|+|+.|++.+||+|+||+++. +.+...+|+.+|++++|.++||+||||||++++|++|+++|+||+++ +
T Consensus 236 ~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~--p 313 (525)
T KOG3818|consen 236 NELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDA--P 313 (525)
T ss_pred eeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHHHHhhccCC--C
Confidence 99999999999999999999999999865 55788999999999999999999999999999999999999999975 8
Q ss_pred CeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhC
Q 014802 317 PSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYI 396 (418)
Q Consensus 317 p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~ 396 (418)
|.+||+||+|+|.|... ++...|+++|+.||..|+.++.+.++++|||||||+|||.+++|||||||++|++++.+.+
T Consensus 314 P~~iIlcG~FtS~p~~~--~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~ 391 (525)
T KOG3818|consen 314 PTAIILCGSFTSSPRQT--SSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVC 391 (525)
T ss_pred CeEEEEecccccccccc--chHHHHHHHHHHHHhhccccccccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhc
Confidence 99999999999999764 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCcEEEEcccc
Q 014802 397 PNAIFSSNPCRLNFLITV 414 (418)
Q Consensus 397 ~~~~~~sNP~ri~~~~~~ 414 (418)
|+++|+||||||+||||.
T Consensus 392 ~~tvfasNPcRIqy~sQE 409 (525)
T KOG3818|consen 392 KNTVFASNPCRIQYCSQE 409 (525)
T ss_pred CCceeccCCeeeEeecce
Confidence 999999999999999993
No 2
>PRK04036 DNA polymerase II small subunit; Validated
Probab=100.00 E-value=6.4e-40 Score=344.07 Aligned_cols=343 Identities=18% Similarity=0.265 Sum_probs=236.5
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCC---cccccHHHHHHHHHHHHHHhhhhccC
Q 014802 7 KKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLK---SSIIDKESVNRVTSVLLQAEAAAEGD 83 (418)
Q Consensus 7 ~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~---~~~vd~~~~~~~~~~~~~~~~~~~~~ 83 (418)
++|+++|..+|++++|+|+.+|.+.-. ..+..+|+.+.+. ... -.+|+.+.++..+......+...+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (504)
T PRK04036 2 AEIVRKFLERGYLLSPEAYELLKELDE-------DDLSELIEKIKEG-KPDKADVIVIDSEDLEEFLSSADLEEEREE-E 72 (504)
T ss_pred hHHHHHHHHcCCCcCHHHHHHHHhccc-------cCHHHHHHHHHhc-CCccccEEEechHHhHHHhhcccccccccc-c
Confidence 589999999999999999999987322 2244444444444 222 228888888887622111000000 0
Q ss_pred CCCCCCCCceEEecCCccCceee----ecccccc---cccCCCCCccCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 014802 84 SGSASNHSAIRVIDAFLVPKFRY----DSIKKHF---YQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFD 156 (418)
Q Consensus 84 ~~~~~~~~~~~Vi~af~~P~~~y----d~~~k~f---~~~~~~~~~~~~~~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~ 156 (418)
.........-..|...+ .+....+ ...++++++.|++.++++||++||..|++++.++.
T Consensus 73 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~y~~R~~~L~~~l~~~~-------- 138 (504)
T PRK04036 73 ------EEESESIRESVNPKINTIAKDIEVDIEVEVLSDVTGKSTCTGEVEDFVAYFRDRYEKLSKIIRGRV-------- 138 (504)
T ss_pred ------ccccccccccccccccccccccccCCCcEEeecCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 00000000111111111 1111111 12467789999999999999999999988886643
Q ss_pred cccCCCCcccceecccccCCC---CcEEEEEEEEEcc---CCc--EEEeeCCcEEEEEecccc--c-c-ceeeccCcEEE
Q 014802 157 VVNSEFGSCEISTIQSLVGQT---GRRWVMGVISQLE---DGH--FYLEDLAASVEIDLSKAK--I-T-TGFFTENTIVV 224 (418)
Q Consensus 157 ~~~~~~~~~~it~I~~Llg~~---g~~~vlGml~~~~---~g~--~~LED~tG~I~Ldls~~~--~-~-~g~~~~g~vV~ 224 (418)
+..+|++|++.. ++.+|+|||++.. +|+ ++|||+||+|+|.++++. . . .+.+++|+||+
T Consensus 139 ---------~~~~i~~l~~~~~~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~ 209 (504)
T PRK04036 139 ---------NHRPIESLKKLKRGGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIG 209 (504)
T ss_pred ---------ccccHHHHhcCccCCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEE
Confidence 345777777654 3467999999975 676 899999999999987553 1 1 24578999999
Q ss_pred EEEEEeeCC-eEEEEEecCCCCCCchhhhhhccCcccCCCCCCchhhhHHHHHHHHhcCCCcEEEEEccccCcHHHHHH-
Q 014802 225 AEGEMLVDG-IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGK- 302 (418)
Q Consensus 225 veG~~~~~G-~F~V~~i~~Pp~e~r~~s~~~~~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~~~l~~- 302 (418)
|+|.+..+| .|+|.+|++|+++++... ++...+.+++++||+|+++..+++.
T Consensus 210 v~G~~~~~g~~f~v~~i~~p~~p~~~~~--------------------------~~~~~~~~i~~ISDlHlgs~~~~~~~ 263 (504)
T PRK04036 210 VEGTLSGDGGLIFADEIIRPDVPRTKEP--------------------------PTKDEKVYAVFISDVHVGSKEFLEDA 263 (504)
T ss_pred EEEEEcCCCCEEEEEEEECCCCCccCCC--------------------------CcCCCccEEEEEcccCCCCcchhHHH
Confidence 999998888 999999999999874210 1123567899999999999877654
Q ss_pred HHHHHhcccCC-------CCCCeEEEEEcCCCCCCCCCCCc----chHHHHHHHHHHHHHHhcCCCccccceEEEecCCC
Q 014802 303 LEVVLDGFESV-------EVVPSLFVFMGNFCSHPCNLSFH----SFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPD 371 (418)
Q Consensus 303 L~~l~~~~~~~-------~~~p~~~Vl~Gnf~s~~~~~~~~----~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~ 371 (418)
+..|+++..+. ...|.++|++||++++...+++. ...++.++++.++++|++. .+++++++|||||
T Consensus 264 l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L---~~~i~V~~ipGNH 340 (504)
T PRK04036 264 FEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQI---PEDIKIIISPGNH 340 (504)
T ss_pred HHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhh---hcCCeEEEecCCC
Confidence 55555555421 23688999999999874433221 1234456678888888864 4678999999999
Q ss_pred CCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 372 DAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 372 Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
||+. .++||||+|+++...+. -+++++++|||++++.++
T Consensus 341 D~~~-~~lPQ~~l~~~l~~~l~--~~~v~~lsNP~~i~l~G~ 379 (504)
T PRK04036 341 DAVR-QAEPQPAFPEEIRSLFP--EHNVTFVSNPALVNLHGV 379 (504)
T ss_pred cchh-hccCCCCccHHHHHhcC--cCCeEEecCCeEEEECCE
Confidence 9998 89999999999855443 258999999999988775
No 3
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=100.00 E-value=9.5e-37 Score=293.71 Aligned_cols=133 Identities=26% Similarity=0.510 Sum_probs=119.0
Q ss_pred CCCcEEEEEccccCcHHHHHHHHHHHhcccCC---CCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHH-HHhcCCC
Q 014802 282 ANDMFVILSDIWLDNEEVMGKLEVVLDGFESV---EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ-MIAAHPR 357 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~---~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~-~l~~~p~ 357 (418)
..++||||||||||++++|++|+++|++|++. +..|.+|||||||+|.|..++.+....|+++|++||+ +|++||.
T Consensus 26 ~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 26 KRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred CceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 34789999999999999999999999999542 3479999999999999976554555679999999998 6899999
Q ss_pred ccccceEEEecCCCCCCC-CCCCCCCCcchHHHHHHHhhC-------CCeEEecCCcEEEEcccc
Q 014802 358 LKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEELQKYI-------PNAIFSSNPCRLNFLITV 414 (418)
Q Consensus 358 l~~~~~~v~vPG~~Dp~~-~~~lPqpplp~~~~~~~~~~~-------~~~~~~sNP~ri~~~~~~ 414 (418)
|+++|+|||||||+|||. +.+|||||||+.|++++++++ |+++|+||||||+|+||.
T Consensus 106 L~~~s~fVFVPGpnDPw~s~~~LPR~PIp~~f~~~~~~~~e~~~~~~~~~i~aSNPcRI~y~sqE 170 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPCACKNSIPKMPILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKK 170 (291)
T ss_pred HHhcCeEEEECCCCCCCcCcccCCCCCchHHHHHHHHHhhhhccCCCCceEEecCCcEEEecCce
Confidence 999999999999999976 479999999999999998664 799999999999999983
No 4
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.94 E-value=7.8e-27 Score=236.33 Aligned_cols=250 Identities=18% Similarity=0.294 Sum_probs=189.0
Q ss_pred cCCCCCccCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCCCCcccceecc-cccCCCCcEEEEEEEEEc---cC
Q 014802 116 HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQ-SLVGQTGRRWVMGVISQL---ED 191 (418)
Q Consensus 116 ~~~~~~~~~~~~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~~~~~~~~~~~it~I~-~Llg~~g~~~vlGml~~~---~~ 191 (418)
..+.+++.|.++++..+||+||..|+..+..++. .--.++++ .+.|+.+ +.|+||++.. ..
T Consensus 91 ~~~~s~~~g~vedf~~~f~~R~~kL~~ii~~~~~--------------~~~~~~~~~~~~~g~d-v~Iig~v~~~r~t~~ 155 (481)
T COG1311 91 VRGNSTCGGIVEDFVPYFRDRYEKLSRIIREREE--------------ARYVSPIKKDLEGGSD-VKIIGEVNDVRETKN 155 (481)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHhcccc--------------CCCcchhhcccccCCC-cEEEEEEccceeeec
Confidence 3556777889999999999999999855544442 11245555 6666555 7899999985 35
Q ss_pred Cc--EEEeeCCcEEEEEecccccccee----eccCcEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhccCcccCCCCC
Q 014802 192 GH--FYLEDLAASVEIDLSKAKITTGF----FTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGT 265 (418)
Q Consensus 192 g~--~~LED~tG~I~Ldls~~~~~~g~----~~~g~vV~veG~~~~~G~F~V~~i~~Pp~e~r~~s~~~~~~ld~~G~~~ 265 (418)
|+ +.+||.||.|.+.+.+.. ..|- .+.+.++++.|.++..|. +++.+.+|..+.+.. .
T Consensus 156 gh~ii~~ed~tG~v~vvl~k~~-e~~~~~~dvl~d~vig~~g~~t~~~~-~a~~~~~p~Vpg~~~-------------~- 219 (481)
T COG1311 156 GHFIISLEDTTGVVTVVLGKDR-EAGRFVVDVLFDEVIGVSGPVTPRSS-FADRIYLPDVPGLSL-------------N- 219 (481)
T ss_pred ccEEEEcccccceEEEEeccch-hhhhhHHhhcCCccccccCccCCccc-cCCcceeccCccccC-------------C-
Confidence 75 448999999999988732 2222 367888999999987777 799999999874211 0
Q ss_pred CchhhhHHHHHHHHhcCCCcEEEEEccccCcHHHHH-HHHHHHhcccCCC---CCCeEEEEEcCCCCCCCCCCCcc----
Q 014802 266 LKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMG-KLEVVLDGFESVE---VVPSLFVFMGNFCSHPCNLSFHS---- 337 (418)
Q Consensus 266 ~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~~~l~-~L~~l~~~~~~~~---~~p~~~Vl~Gnf~s~~~~~~~~~---- 337 (418)
.....+.+++++||+|.|+..|++ .+.+++.|+.... .+..++|++||.+++.+.|+++.
T Consensus 220 ------------~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~ 287 (481)
T COG1311 220 ------------NTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELV 287 (481)
T ss_pred ------------CCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccc
Confidence 011234689999999999999996 5777778876521 23479999999999988886542
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEcccc
Q 014802 338 FSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITV 414 (418)
Q Consensus 338 ~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~~ 414 (418)
+.+..+++++||++|.+ ++.+++++++||||||.+ .++|||..|....+.+. ..|+.|+||||.+++.|.+
T Consensus 288 i~di~~qy~~~A~~L~~---vp~~I~v~i~PGnhDa~r-~a~PQp~~~~~~kslf~--~~n~~~v~NP~~~~l~G~~ 358 (481)
T COG1311 288 IADIYEQYEELAEFLDQ---VPEHIKVFIMPGNHDAVR-QALPQPHFPELIKSLFS--LNNLLFVSNPALVSLHGVD 358 (481)
T ss_pred cccchHHHHHHHHHHhh---CCCCceEEEecCCCCccc-cccCCCCcchhhccccc--ccceEecCCCcEEEECCEE
Confidence 34556889999999986 557899999999999999 99999966665554442 4579999999999999864
No 5
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]
Probab=99.87 E-value=1.9e-21 Score=192.27 Aligned_cols=244 Identities=17% Similarity=0.240 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCccccccCCCCcccceecccccC---CCCcEEEEEEEEEc--------------
Q 014802 127 SAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVG---QTGRRWVMGVISQL-------------- 189 (418)
Q Consensus 127 ~~k~~~fr~Ry~~l~qrl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg---~~g~~~vlGml~~~-------------- 189 (418)
..+.+.|-.|...+|.||+++..= ..++ =-+++.+++ -.|+-+|+|.|-+.
T Consensus 27 ~Qy~~iY~aRL~elRp~i~~~A~k---~wg~---------~~~l~~~l~l~~~~~~C~vVGTlfk~~~lKPsIl~~v~~e 94 (435)
T KOG2732|consen 27 RQYFHIYFARLKELRPRILELAQK---KWGS---------GPPLKKQLDLEKGKGECWVVGTLFKAMALKPSILDEVSNE 94 (435)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHh---hcCC---------CCchhhheeeccCCccEEEEEehhhhcccCcHHHHHHhhh
Confidence 568889999999999999997621 0111 122334433 22345799998762
Q ss_pred --------------cCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhc
Q 014802 190 --------------EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLL 255 (418)
Q Consensus 190 --------------~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~~Pp~e~r~~s~~~~ 255 (418)
++++|.|||++|||+|..+ ......+.+|++|+|.|...++|+|+|.++++|...++.+.++.
T Consensus 95 ~~~~p~~~~~~y~~ped~i~LEDe~grV~L~G~--~i~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~~pq~~P~~~- 171 (435)
T KOG2732|consen 95 HKVAPDPEESNYHSPEDEIVLEDESGRVRLEGS--FISHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGSSPQGKPRAT- 171 (435)
T ss_pred hccCCCCcccccCCccceEEEecCCceEEEEee--cccccceeeeEEEEEecccccCceEEEEEEeccCCCccCCCCCc-
Confidence 2678999999999999876 34567888999999999999999999999999999876322100
Q ss_pred cCcccCCCCCCchhhhHHHHHHHHhcCCCcEEEEEccccCcH-HHHHHHHHHHhcccC-----CC---CCCeEEEEEcCC
Q 014802 256 AGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE-EVMGKLEVVLDGFES-----VE---VVPSLFVFMGNF 326 (418)
Q Consensus 256 ~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~-~~l~~L~~l~~~~~~-----~~---~~p~~~Vl~Gnf 326 (418)
...+.++++.|.+-|++. ..+..++-|-+++.. .+ ....++|++||.
T Consensus 172 ------------------------~~~~~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~lg~e~~~~~~~i~rliv~Gn~ 227 (435)
T KOG2732|consen 172 ------------------------LPSQRKIALVSGLDLGGGSKNLLRLELLVDWLRGQLGNEYEQSASSIGRLIVAGNS 227 (435)
T ss_pred ------------------------CCCCCEEEEEeccccCCCcchhHHHHHHHHHHhcccCccccccccccceEEEeccc
Confidence 012347888888888765 445555544444321 11 134699999999
Q ss_pred CCCCCCC-CC----------cchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhh
Q 014802 327 CSHPCNL-SF----------HSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKY 395 (418)
Q Consensus 327 ~s~~~~~-~~----------~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~ 395 (418)
++..... +. .+....-...++|.++|.+ ++.++++.+|||++||.. .+|||||+|++++++....
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ld~~L~~---~~~s~~VdimPG~~Dp~~-~~lPqqPlh~~lfp~s~~~ 303 (435)
T KOG2732|consen 228 LSFSIKILDSQSTSISRLTKKDSAASVIPVKELDNFLAQ---IPASISVDIMPGVNDPSN-FMLPQQPLHRCLFPKSPQS 303 (435)
T ss_pred cchhhhccccceeeeeeccccccccccccHHHHHHHHHh---ccccCCccCCCCCCChhh-ccCCcCCcchhhhccCccc
Confidence 8763211 10 0111122355668888875 556899999999999998 9999999999999988654
Q ss_pred CCCeEEecCCcEEEEccc
Q 014802 396 IPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 396 ~~~~~~~sNP~ri~~~~~ 413 (418)
...+..+|||+.+++.+-
T Consensus 304 ~~~~q~vTNPy~~~ld~~ 321 (435)
T KOG2732|consen 304 LSTLQLVTNPYEFSLDGA 321 (435)
T ss_pred cchhhcccCceEEEEcCE
Confidence 667889999999998764
No 6
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=99.84 E-value=1.7e-21 Score=182.48 Aligned_cols=126 Identities=27% Similarity=0.426 Sum_probs=91.5
Q ss_pred EEEEEccccC-cHHHHHHHHHHHhccc-CCCCCCeEEEEEcCCCCCCCCCCCcc--hHHHHHHHHHHHHHHhcCCCcccc
Q 014802 286 FVILSDIWLD-NEEVMGKLEVVLDGFE-SVEVVPSLFVFMGNFCSHPCNLSFHS--FSSLRLQFGKLGQMIAAHPRLKEH 361 (418)
Q Consensus 286 ~v~lSDv~ld-~~~~l~~L~~l~~~~~-~~~~~p~~~Vl~Gnf~s~~~~~~~~~--~~~~~~~f~~La~~l~~~p~l~~~ 361 (418)
|||+||+|++ ++..++.|+++|.++. .. +|.++||||||++....+.... ...++..++.+..+++.++++..+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~--~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDAS--KPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPS 78 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCT--TECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccC--CCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccc
Confidence 6899999999 6778999999999998 43 7999999999999864331111 124566777788888888899999
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEcccc
Q 014802 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLITV 414 (418)
Q Consensus 362 ~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~~ 414 (418)
++||||||++||+...++||||||+.+++++++ ..+++++|||||+++.++.
T Consensus 79 ~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~-~~~~~~~sNP~~~~i~~~~ 130 (209)
T PF04042_consen 79 TQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKK-YSNIHFVSNPCRISINGQE 130 (209)
T ss_dssp SEEEEE--TTCTT-S-SCSB----TTTTCHHCT-TTTEEE--CSEEEEETTEE
T ss_pred cEEEEeCCCccccccCCCCCCCCCHHHHhhhhh-cCceEEeCCCeEEEEeCCc
Confidence 999999999999995599999999999988854 4459999999999999873
No 7
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.71 E-value=4.3e-17 Score=157.11 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=95.1
Q ss_pred cEEEEEccccCcHHHH-HHHHHHHhcccCC---------CCCCeEEEEEcCCCCCCCCCCC----------cchHHHHHH
Q 014802 285 MFVILSDIWLDNEEVM-GKLEVVLDGFESV---------EVVPSLFVFMGNFCSHPCNLSF----------HSFSSLRLQ 344 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l-~~L~~l~~~~~~~---------~~~p~~~Vl~Gnf~s~~~~~~~----------~~~~~~~~~ 344 (418)
+++|+||+|+++..+. .+|+.|.+|+.+. ....+++|++||.+++...... .......++
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 5899999999998654 4555555554321 1245799999999997643210 112344677
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 345 FGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 345 f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
+++|+++|++ |++++++++|||+|||+. .+|||||||++++++.. .++++.++|||+.++..+.
T Consensus 81 ~~~ld~~l~~---l~~~i~V~imPG~~Dp~~-~~lPQqplh~~lfp~s~-~~~~~~~vtNP~~~~i~g~ 144 (257)
T cd07387 81 VKELDNFLSQ---LASSVPVDLMPGEFDPAN-HSLPQQPLHRCLFPKSS-NYSTLNLVTNPYEFSIDGV 144 (257)
T ss_pred HHHHHHHHHh---hhcCCeEEECCCCCCccc-ccCCCCCCCHHHhhccc-ccCCcEEeCCCeEEEECCE
Confidence 8899999996 557899999999999998 99999999999997764 4679999999999988765
No 8
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=99.69 E-value=1.9e-15 Score=154.96 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=140.5
Q ss_pred CCCcEEEEEEEEEcc---CCcE-----EE----eeCCc-EEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEecC
Q 014802 176 QTGRRWVMGVISQLE---DGHF-----YL----EDLAA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGF 242 (418)
Q Consensus 176 ~~g~~~vlGml~~~~---~g~~-----~L----ED~tG-~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~~ 242 (418)
+.+.++.+|||+... +|++ .| ||.+| +|+||+++-. ...+| +|+||+|+|....++.|.|.+|.-
T Consensus 243 Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~~g~~Vrldls~l~-e~SiF-PGQIVavkG~N~~G~~l~v~ki~~ 320 (600)
T KOG1625|consen 243 SQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDSSGVRVRLDLSRLK-EYSIF-PGQIVAVKGKNPTGEKLTVEKILP 320 (600)
T ss_pred cccceEEEEEEecCCCCcccccCccceEeeeccccCCCceEEeehhhcc-ceeec-CCcEEEEeeecCCCCeEEeeeecc
Confidence 345578999999865 5543 23 77778 8999999753 35677 999999999997788899999887
Q ss_pred CCCCCchhhhhhccCcccCCCCCCchhhhHHHHHHHHhcCCCcEEEEEccccCcH-HHHHHHHHHHhcccCCCCCCeEEE
Q 014802 243 PPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE-EVMGKLEVVLDGFESVEVVPSLFV 321 (418)
Q Consensus 243 Pp~e~r~~s~~~~~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~-~~l~~L~~l~~~~~~~~~~p~~~V 321 (418)
+|.=+... .+.+..+ ..+ .+..||+.|.-|-.+. -.++.|..+++..... +|..+|
T Consensus 321 ~~plp~~~----------------~~~qed~--~~~---~~~~ivvasGPyt~sDnl~yepL~dll~~v~~~--~pdvLI 377 (600)
T KOG1625|consen 321 IPPLPIPV----------------QPLQEDA--TFE---ANTVIVVASGPYTASDNLSYEPLCDLLDYVNAE--RPDVLI 377 (600)
T ss_pred CCCCCCCc----------------Cchhhhh--hcc---ccceEEEEecCccCccccchhHHHHHHHHHhcC--CCCEEE
Confidence 66322000 0000000 111 1124677777777655 4569999999877643 799999
Q ss_pred EEcCCCCC--CCCCCCcchHHHHHHHHHH-HHHHhcCCCcc-ccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCC
Q 014802 322 FMGNFCSH--PCNLSFHSFSSLRLQFGKL-GQMIAAHPRLK-EHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIP 397 (418)
Q Consensus 322 l~Gnf~s~--~~~~~~~~~~~~~~~f~~L-a~~l~~~p~l~-~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~ 397 (418)
|+|.|++. +....+.....|.+-|.++ ..+|.. +. .++++|+||.-+|.....++||||+ ...++....+
T Consensus 378 L~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~---~~~~~~~vVlvPs~~Da~~~~vfPq~pf---~~~~~~~~~~ 451 (600)
T KOG1625|consen 378 LFGPFLDSKHPLINKGALTITFDELFEKLILGILET---LVGSKTQVVLVPSTNDALCLPVFPQPPF---ARNRLSDEKK 451 (600)
T ss_pred EeccccCccChhhccCCcCccHHHHHHHHHHHHHHh---ccCCcceEEEeccccccccCccCCCCch---hhhhccCccc
Confidence 99999986 2222111123577888664 344543 33 3468999999999977789999998 2333322225
Q ss_pred CeEEecCCcEEEEcc
Q 014802 398 NAIFSSNPCRLNFLI 412 (418)
Q Consensus 398 ~~~~~sNP~ri~~~~ 412 (418)
|+.++.|||-+++-+
T Consensus 452 ~l~~~~nPc~f~in~ 466 (600)
T KOG1625|consen 452 NLKCVANPCLFSING 466 (600)
T ss_pred ceEEccCcceEEEcc
Confidence 999999999998754
No 9
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=99.51 E-value=5e-14 Score=110.01 Aligned_cols=70 Identities=30% Similarity=0.482 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChH-HHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAED-EAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 3 ~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~-~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
+++|++|+++||+|||+|++||++||++++.+....+. +|+++|++.|.|| ++++++||+++|+.++++|
T Consensus 3 ~~lrk~I~~~FkL~Gl~Lr~eA~~~l~~~l~~~~~~e~e~~l~~Ii~~v~kq-~Lss~~v~~~~ie~Av~ec 73 (73)
T PF12213_consen 3 AKLRKKIVKAFKLRGLSLRSEASKYLAEQLQSLSEEEREDWLDKIIDAVQKQ-PLSSSIVDKEHIESAVKEC 73 (73)
T ss_dssp HHHHHHHHHHHHHTT-EE-HHHHHHHHHHTTTS-TTTHHHHHHHHHHHHTTS---SSSEE-HHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhccceecHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcC-CCCCCccCHHHHHHHHHcC
Confidence 58999999999999999999999999999999877764 6999999999999 9999999999999999986
No 10
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.51 E-value=1.2e-13 Score=132.67 Aligned_cols=122 Identities=17% Similarity=0.272 Sum_probs=88.3
Q ss_pred EEEEEccccCcHHHHH-HHHHHHhcccCCC---CCCeEEEEEcCCCCCCCCCCCc----chHHHHHHHHHHHHHHhcCCC
Q 014802 286 FVILSDIWLDNEEVMG-KLEVVLDGFESVE---VVPSLFVFMGNFCSHPCNLSFH----SFSSLRLQFGKLGQMIAAHPR 357 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~-~L~~l~~~~~~~~---~~p~~~Vl~Gnf~s~~~~~~~~----~~~~~~~~f~~La~~l~~~p~ 357 (418)
.+++||+||+++...+ .++.+.+++.+.. ..|.++|++||+++........ ......+.+..++++|++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 77 (243)
T cd07386 1 AVFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSD--- 77 (243)
T ss_pred CEEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHh---
Confidence 3789999999986653 3445555444321 2578999999999873211111 012334556778888775
Q ss_pred ccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 358 LKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 358 l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
+.+.+++++||||||++. ..+||+|+++.+.+.+. .+++++.+|||++++.++
T Consensus 78 L~~~~~v~~ipGNHD~~~-~~~pq~~l~~~l~~~~~--~~~v~~l~Np~~~~~~g~ 130 (243)
T cd07386 78 VPSHIKIIIIPGNHDAVR-QAEPQPALPEEIRKLFL--PGNVEFVSNPALVKIHGV 130 (243)
T ss_pred cccCCeEEEeCCCCCccc-ccCCCCCccHHHHhhcC--CCceEEeCCCCEEEECCE
Confidence 445689999999999987 89999999999887653 368999999999988776
No 11
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.7e-08 Score=100.71 Aligned_cols=204 Identities=17% Similarity=0.225 Sum_probs=126.0
Q ss_pred CcEEEEEEEEEcc--------CCcEEEeeC----Cc-EEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEe-cCC
Q 014802 178 GRRWVMGVISQLE--------DGHFYLEDL----AA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC-GFP 243 (418)
Q Consensus 178 g~~~vlGml~~~~--------~g~~~LED~----tG-~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i-~~P 243 (418)
...+++|.|+--. ...+.||-. .| ||+|++++.. ...+| +|+||.|.|+...+|.|.|.+| ..|
T Consensus 203 s~~y~vGrIv~~s~~~g~~Ln~eSv~lesSr~gg~gvrVRL~l~~l~-~yS~F-pGQIVavKGkN~~G~~ftv~~ilpiP 280 (581)
T COG5214 203 SSFYTVGRIVNPSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQ-RYSVF-PGQIVAVKGKNTDGGKFTVEAILPIP 280 (581)
T ss_pred CceEEEEEecCCCcccccccCcceeeeeeecccCCCeEEEeehhhcc-ccccc-cccEEEEecccCCCCeEEeeeeeccC
Confidence 3456899887631 123556543 23 8999888642 34667 9999999999988889999986 455
Q ss_pred CCCCchhhhhhccCcccCCCCCCchhhhHHHHHHHHhcCCCcEEEEEccccCcH-HHHHHHHHHHhcccCCCCCCeEEEE
Q 014802 244 PLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE-EVMGKLEVVLDGFESVEVVPSLFVF 322 (418)
Q Consensus 244 p~e~r~~s~~~~~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~lSDv~ld~~-~~l~~L~~l~~~~~~~~~~p~~~Vl 322 (418)
+.+---. .+.++...++ ..-.+....||+.|.-|--.. -..+.|..+++..... ....+|+
T Consensus 281 ~~p~~p~---------------s~~qE~~~fq-an~~~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n--~vdvlIl 342 (581)
T COG5214 281 VVPINPA---------------SDGQEKKYFQ-ANTNNQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVNAN--DVDVLIL 342 (581)
T ss_pred CcCCCcC---------------cchhhhhhhc-cccCCCceEEEEEcCCCCCccccCcChHHHHHHHhccC--CccEEEE
Confidence 4442100 0111111111 111123345777777665433 3345677777765533 3459999
Q ss_pred EcCCCCC--CCCC----CCcchHHHHHHHHHHHH-HHhcCCCccccceEEEecCCCCCCC-CCCCCCCCcchHHHHHHHh
Q 014802 323 MGNFCSH--PCNL----SFHSFSSLRLQFGKLGQ-MIAAHPRLKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEELQK 394 (418)
Q Consensus 323 ~Gnf~s~--~~~~----~~~~~~~~~~~f~~La~-~l~~~p~l~~~~~~v~vPG~~Dp~~-~~~lPqpplp~~~~~~~~~ 394 (418)
||.|++- +... .+.....++|.|-.+-. +|.. + .-.+-|+||.-+|+.. ..++||-||-..- +
T Consensus 343 ~GPFidi~h~li~~G~~~~t~~~~l~ElF~~r~tpiL~~---~-~~p~~vLIPstnDa~s~h~a~PQ~~~~r~a---l-- 413 (581)
T COG5214 343 IGPFIDINHILIQYGATQSTPDSMLKELFIPRITPILDR---N-AGPKAVLIPSTNDATSCHNAFPQGPIGRNA---L-- 413 (581)
T ss_pred eccccCcchhhhhhCCCCCCChhHHHHHHHHhhhHHHhc---c-CCCceEEeccccchhhccccCCccccchhh---h--
Confidence 9999985 2111 11234667887765443 3432 1 2237999999999974 3799999985532 2
Q ss_pred hCC-CeEEecCCcEEEE
Q 014802 395 YIP-NAIFSSNPCRLNF 410 (418)
Q Consensus 395 ~~~-~~~~~sNP~ri~~ 410 (418)
.+| |..++.|||.+..
T Consensus 414 ~lp~nfkC~~NPc~F~I 430 (581)
T COG5214 414 RLPSNFKCTGNPCEFFI 430 (581)
T ss_pred cCCccccccCCcceeEe
Confidence 244 7889999998764
No 12
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.01 E-value=4e-05 Score=77.40 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=64.7
Q ss_pred cEEEEEccccCcHH----HHHHHHHHHhcccC--CCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCc
Q 014802 285 MFVILSDIWLDNEE----VMGKLEVVLDGFES--VEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRL 358 (418)
Q Consensus 285 ~~v~lSDv~ld~~~----~l~~L~~l~~~~~~--~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l 358 (418)
+++.+||+|||... ..+.....|+...+ .+..|.++|++||+.+.....+......+.+ .+...|.+
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~---~l~~~L~~---- 74 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVRE---KIFDLLKE---- 74 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHH---HHHHHHHH----
Confidence 57889999998542 22223333433311 1226899999999998742211111111111 12233332
Q ss_pred cccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 359 KEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 359 ~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
..+++++||||||... .-..++.-+..+. ...+++++...|..+.+.+.
T Consensus 75 -~gi~v~~I~GNHD~~~-~~~~~~~~~~~ll----~~~~~v~v~~~~~~v~i~g~ 123 (340)
T PHA02546 75 -AGITLHVLVGNHDMYY-KNTIRPNAPTELL----GQYDNITVIDEPTTVDFDGC 123 (340)
T ss_pred -CCCeEEEEccCCCccc-ccccccCchHHHH----hhCCCEEEeCCceEEEECCE
Confidence 2479999999999854 2222332222222 34678888888887766543
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.86 E-value=4e-05 Score=72.70 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=52.5
Q ss_pred cEEEEEccccCcH--------HHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 014802 285 MFVILSDIWLDNE--------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (418)
Q Consensus 285 ~~v~lSDv~ld~~--------~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p 356 (418)
+|+++||+|++.. ...+.|+++++.+.+....|..+|++||+++... ..+ ++.+.+++.+.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~------~~~----~~~~~~~l~~~- 69 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS------PES----YERLRELLAAL- 69 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC------HHH----HHHHHHHHhhc-
Confidence 4789999999963 3456788888877653235889999999997521 122 33344445443
Q ss_pred CccccceEEEecCCCCCC
Q 014802 357 RLKEHSRFLFIPGPDDAG 374 (418)
Q Consensus 357 ~l~~~~~~v~vPG~~Dp~ 374 (418)
.+++++||||||..
T Consensus 70 ----~~p~~~v~GNHD~~ 83 (240)
T cd07402 70 ----PIPVYLLPGNHDDR 83 (240)
T ss_pred ----CCCEEEeCCCCCCH
Confidence 47899999999973
No 14
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.64 E-value=0.00027 Score=63.45 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCCCCcchHHHHHHHhh
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKY 395 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~ 395 (418)
.|..+|+.||+++.... .....+.+.+..+..++...+ ..++++||||||.+... +++.....++.+.
T Consensus 38 ~pd~vv~~GDl~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~GNHD~~~~~-----~~~~~~~~~~~~~ 105 (156)
T cd08165 38 QPDVVFVLGDLFDEGKW---STDEEWEDYVERFKKMFGHPP----DLPLHVVVGNHDIGFHY-----EMTTYKLERFEKV 105 (156)
T ss_pred CCCEEEECCCCCCCCcc---CCHHHHHHHHHHHHHHhccCC----CCeEEEEcCCCCcCCCC-----ccCHHHHHHHHHH
Confidence 69999999999875321 122445555666666665432 36899999999997622 3344445555433
Q ss_pred CCCeEEecCCc
Q 014802 396 IPNAIFSSNPC 406 (418)
Q Consensus 396 ~~~~~~~sNP~ 406 (418)
+ +.+.=+|.
T Consensus 106 ~--~~l~H~p~ 114 (156)
T cd08165 106 F--ILLQHFPL 114 (156)
T ss_pred e--eeeeCChH
Confidence 2 45555665
No 15
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=97.55 E-value=0.00018 Score=70.23 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=51.9
Q ss_pred CcEEEEEccccCc--------HHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcC
Q 014802 284 DMFVILSDIWLDN--------EEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (418)
Q Consensus 284 ~~~v~lSDv~ld~--------~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~ 355 (418)
-+|+.+||+||.. ..+.+.|+++++........|..+|+.||+++.. ...+ ++.+.+.++++
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~------~~~~----~~~~~~~l~~l 84 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH------SSEA----YQHFAEGIAPL 84 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC------CHHH----HHHHHHHHhhc
Confidence 5688899999843 1355678888877655333588999999998742 1223 33344555544
Q ss_pred CCccccceEEEecCCCCC
Q 014802 356 PRLKEHSRFLFIPGPDDA 373 (418)
Q Consensus 356 p~l~~~~~~v~vPG~~Dp 373 (418)
+ .++.+||||||.
T Consensus 85 ~-----~Pv~~v~GNHD~ 97 (275)
T PRK11148 85 R-----KPCVWLPGNHDF 97 (275)
T ss_pred C-----CcEEEeCCCCCC
Confidence 2 589999999997
No 16
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.54 E-value=0.00017 Score=62.94 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=45.4
Q ss_pred EEEEEccccCcHHHHHH------HHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCcc
Q 014802 286 FVILSDIWLDNEEVMGK------LEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLK 359 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~------L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~ 359 (418)
|+.+||+|++....... |..++....+ ..|..+|++||+++.... .+ ++.+.+++.++....
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~--~~~d~vi~~GDl~~~~~~------~~----~~~~~~~~~~l~~~~ 68 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKA--LDPDLVVITGDLTQRGLP------EE----FEEAREFLDALPAPL 68 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhc--cCCCEEEECCCCCCCCCH------HH----HHHHHHHHHHccccC
Confidence 46799999987743322 2224443333 258999999999875321 22 233444454433211
Q ss_pred ccceEEEecCCCCC
Q 014802 360 EHSRFLFIPGPDDA 373 (418)
Q Consensus 360 ~~~~~v~vPG~~Dp 373 (418)
.++.+||||||.
T Consensus 69 --~~~~~v~GNHD~ 80 (144)
T cd07400 69 --EPVLVVPGNHDV 80 (144)
T ss_pred --CcEEEeCCCCeE
Confidence 589999999994
No 17
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.51 E-value=0.00019 Score=67.03 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=48.1
Q ss_pred EEEEccccCcHHHH--HHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 287 VILSDIWLDNEEVM--GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 287 v~lSDv~ld~~~~l--~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|+||+||+..... ..+..++.... +..|..+|++||+++.-..........+.+.+..+...+. ..+++
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~--~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~v 72 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALA--LGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLAD------RGTRV 72 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhc--cCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHH------CCCeE
Confidence 48999999987543 23444443322 1258899999999975221111112223332333444433 45799
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
++|+||||...
T Consensus 73 ~~v~GNHD~~~ 83 (217)
T cd07398 73 YYVPGNHDFLL 83 (217)
T ss_pred EEECCCchHHH
Confidence 99999999853
No 18
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.45 E-value=0.00036 Score=65.01 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=49.3
Q ss_pred cEEEEEccccCcHH-----------HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014802 285 MFVILSDIWLDNEE-----------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353 (418)
Q Consensus 285 ~~v~lSDv~ld~~~-----------~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~ 353 (418)
+|+.+||+||+... .++.|..+++...+. .|..+|++||+++.... +...+....+.|..+-.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~i~~~GD~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE--KVDFVLIAGDLFDSNNP----SPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc--CCCEEEECCcccCCCCC----CHHHHHHHHHHHHHHHH
Confidence 47899999999753 234566666554433 57899999999886421 11222222222222211
Q ss_pred cCCCccccceEEEecCCCCCCC
Q 014802 354 AHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 354 ~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
..+.+.++|||||...
T Consensus 75 ------~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 75 ------AGIPVFIIAGNHDSPS 90 (223)
T ss_pred ------CCCCEEEecCCCCCcc
Confidence 2468999999999865
No 19
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.45 E-value=0.00033 Score=68.21 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=53.4
Q ss_pred cEEEEEccccCcHH---------HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcC
Q 014802 285 MFVILSDIWLDNEE---------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (418)
Q Consensus 285 ~~v~lSDv~ld~~~---------~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~ 355 (418)
+|+++||+|+..+. ..+.|+..++.+.+. .|..+|++||.++.... . -.+.|+.+.+.+.++
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~---~----~~~~~~~~~~~l~~l 72 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNA---R----AEEALDAVLAILDRL 72 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCc---h----HHHHHHHHHHHHHhc
Confidence 58899999988742 346777777777654 48899999999864321 1 223444455555543
Q ss_pred CCccccceEEEecCCCCCCC
Q 014802 356 PRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 356 p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.+++.++|||||-..
T Consensus 73 -----~~p~~~v~GNHD~~~ 87 (267)
T cd07396 73 -----KGPVHHVLGNHDLYN 87 (267)
T ss_pred -----CCCEEEecCcccccc
Confidence 268999999999753
No 20
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.44 E-value=0.00057 Score=65.51 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred cEEEEEccccCcH--HHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 285 MFVILSDIWLDNE--EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 285 ~~v~lSDv~ld~~--~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+++|+||+|++.. ...+++.+++.... ..|..++++||+++.-.... .......+..+.|..+-. ..+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~---~~~d~l~i~GDl~d~~~g~~-~~~~~~~~~~~~l~~l~~------~g~ 71 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEA---RQADALYILGDLFEAWIGDD-DPSPFAREIAAALKALSD------SGV 71 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEccceeccccccC-cCCHHHHHHHHHHHHHHH------cCC
Confidence 4789999999854 33345555554322 25889999999997521111 011122222222322211 236
Q ss_pred eEEEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 363 RFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 363 ~~v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
++++||||||.... ..+.. -.++....||..+.+.++
T Consensus 72 ~v~~v~GNHD~~~~---------~~~~~-----~~g~~~l~~~~~~~~~g~ 108 (241)
T PRK05340 72 PCYFMHGNRDFLLG---------KRFAK-----AAGMTLLPDPSVIDLYGQ 108 (241)
T ss_pred eEEEEeCCCchhhh---------HHHHH-----hCCCEEeCCcEEEEECCE
Confidence 89999999997541 12221 234667778877665444
No 21
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.37 E-value=0.00043 Score=64.82 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=52.0
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|++.....+.++++++...+. .|..++++||+++..... . +.+.+++++ +.....+
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~--~~d~vl~~GD~~~~~~~~-----~------~~~~~~l~~---l~~~~~v 66 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINAL--KPDLVVLTGDLVDGSVDV-----L------ELLLELLKK---LKAPLGV 66 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhcc--CCCEEEEcCcccCCcchh-----h------HHHHHHHhc---cCCCCCE
Confidence 68899999999775555667776665543 588999999998764211 1 223344443 2335789
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
.++|||||...
T Consensus 67 ~~v~GNHD~~~ 77 (223)
T cd07385 67 YAVLGNHDYYS 77 (223)
T ss_pred EEECCCccccc
Confidence 99999999865
No 22
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.32 E-value=0.00057 Score=62.09 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=45.0
Q ss_pred EEEEccccCcHHHHH-------------HHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014802 287 VILSDIWLDNEEVMG-------------KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353 (418)
Q Consensus 287 v~lSDv~ld~~~~l~-------------~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~ 353 (418)
+++||+||+....+. .++.+.+.+.. ..|..+|++||++...... ... .+..+. ++.
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~--~~~d~lii~GDl~~~~~~~---~~~----~~~~~~-~~~ 70 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEE--YGPERLIILGDLKHSFGGL---SRQ----EFEEVA-FLR 70 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHh--cCCCEEEEeCccccccccc---CHH----HHHHHH-HHH
Confidence 378999999876542 23333333332 2589999999999754221 111 111121 111
Q ss_pred cCCCccccceEEEecCCCCCCC
Q 014802 354 AHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 354 ~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.....+++++|+||||...
T Consensus 71 ---~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 71 ---LLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred ---hccCCCeEEEEcccCccch
Confidence 1124579999999999876
No 23
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.29 E-value=0.00088 Score=64.72 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred CCcEEEEEccccCcHHHH------------HHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHH
Q 014802 283 NDMFVILSDIWLDNEEVM------------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ 350 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l------------~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~ 350 (418)
+..|+++||.|++..... ..|+.+++...+....|..+|++||+++.... .. ...+.++.+.+
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~---~~--~~~~~~~~~~~ 78 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPG---DE--LRERQVSDLKD 78 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcc---hh--hHHHHHHHHHH
Confidence 357889999999964222 34566666655433358899999999876321 11 12234556666
Q ss_pred HHhcCCCccccceEEEecCCCCCCC
Q 014802 351 MIAAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 351 ~l~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
++.++ ...+++.++|||||-+.
T Consensus 79 ~~~~~---~~~vp~~~i~GNHD~~~ 100 (262)
T cd07395 79 VLSLL---DPDIPLVCVCGNHDVGN 100 (262)
T ss_pred HHhhc---cCCCcEEEeCCCCCCCC
Confidence 66543 23579999999999764
No 24
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=97.23 E-value=0.003 Score=50.24 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=50.0
Q ss_pred EEEEEEEEc---cCC--cEEEeeCCcEEEEEecccccc----ceeeccCcEEEEEEEEe-eCCeEEEEEecCCCCC
Q 014802 181 WVMGVISQL---EDG--HFYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML-VDGIFQVITCGFPPLE 246 (418)
Q Consensus 181 ~vlGml~~~---~~g--~~~LED~tG~I~Ldls~~~~~----~g~~~~g~vV~veG~~~-~~G~F~V~~i~~Pp~e 246 (418)
.+.||++.. ..| .+.|||.+|++++.+-...+. ..++.+|.+|+++|... .++.+.|.+|.+|+++
T Consensus 3 ~i~GiI~~v~~TK~g~~~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~~~l~~~~I~~~~~~ 78 (79)
T cd04490 3 SIIGMVNDVRSTKNGHRIVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEIFRPDVP 78 (79)
T ss_pred EEEEEEeEEEEcCCCCEEEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCCCEEEEEEeEcCCCC
Confidence 467777653 334 577999999999977654333 35788999999999985 2336889999999975
No 25
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0012 Score=63.87 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=46.3
Q ss_pred cEEEEEccccCcHH--------HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 014802 285 MFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (418)
Q Consensus 285 ~~v~lSDv~ld~~~--------~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p 356 (418)
+++.+||+||+... ....|..+++...+ ..|..+|++||+.+..... . . -.+.|..+-.-|++
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~--~~~D~lli~GDi~d~~~p~---~-~-~~~~~~~~l~~l~~-- 72 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKA--EQIDALLVAGDVFDTANPP---A-E-AQELFNAFFRNLSD-- 72 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHH--cCCCEEEECCccCCCCCCC---H-H-HHHHHHHHHHHHHh--
Confidence 47889999998742 12234444433332 2589999999999875321 1 1 11122222222221
Q ss_pred CccccceEEEecCCCCCCC
Q 014802 357 RLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 357 ~l~~~~~~v~vPG~~Dp~~ 375 (418)
. ..+++++|+||||...
T Consensus 73 -~-~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 73 -A-NPIPIVVISGNHDSAQ 89 (253)
T ss_pred -c-CCceEEEEccCCCChh
Confidence 1 1268999999999864
No 26
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.19 E-value=0.00088 Score=65.50 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=48.1
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
-+++++||+|++...-.+.++++++...+. .|..+|++||+++... ......+ .+.|.++ .+...
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~--~pDlVli~GD~~d~~~---~~~~~~~-------~~~L~~L---~~~~p 114 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQ--KPDLILLGGDYVLFDM---PLNFSAF-------SDVLSPL---AECAP 114 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEccCcCCCCc---cccHHHH-------HHHHHHH---hhcCC
Confidence 569999999997443344566666655443 6899999999987311 1112222 2233322 12257
Q ss_pred EEEecCCCCCCC
Q 014802 364 FLFIPGPDDAGP 375 (418)
Q Consensus 364 ~v~vPG~~Dp~~ 375 (418)
+++|+||||-..
T Consensus 115 v~~V~GNHD~~~ 126 (271)
T PRK11340 115 TFACFGNHDRPV 126 (271)
T ss_pred EEEecCCCCccc
Confidence 999999999753
No 27
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.11 E-value=0.0021 Score=61.19 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=56.2
Q ss_pred EEEEccccCcH--HHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 287 VILSDIWLDNE--EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 287 v~lSDv~ld~~--~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++||+|++.. ...+.+.+++..... .|..+|++||+++.-..... ....+ +.+...|.++.. ..+.+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~---~~d~lii~GDi~d~~~~~~~-~~~~~----~~~~~~l~~L~~--~~~~v 71 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR---KADALYILGDLFEAWIGDDD-PSTLA----RSVAQAIRQVSD--QGVPC 71 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc---cCCEEEEcCceeccccCCCC-CCHHH----HHHHHHHHHHHH--CCCeE
Confidence 68999999864 233444444443322 48899999999985211111 11111 122222222111 13689
Q ss_pred EEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 365 v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
++||||||.... ..+. + ..++.+..||..+...++
T Consensus 72 ~~v~GNHD~~~~---------~~~~----~-~~gi~~l~~~~~~~~~g~ 106 (231)
T TIGR01854 72 YFMHGNRDFLIG---------KRFA----R-EAGMTLLPDPSVIDLYGQ 106 (231)
T ss_pred EEEcCCCchhhh---------HHHH----H-HCCCEEECCCEEEEECCE
Confidence 999999997431 1111 1 125677777776665544
No 28
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=97.11 E-value=0.0034 Score=53.63 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=43.7
Q ss_pred cEEEEEccccCcHHHH---HHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 014802 285 MFVILSDIWLDNEEVM---GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l---~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~ 361 (418)
+|+++||+|++..... ..+..... . ..|..+|+.||+++..... ......+....... ...
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~---~--~~~d~ii~~GD~~~~~~~~-----~~~~~~~~~~~~~~------~~~ 65 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAA---E--NKPDFIIFLGDLVDGGNPS-----EEWRAQFWFFIRLL------NPK 65 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHH---H--TTTSEEEEESTSSSSSSHH-----HHHHHHHHHHHHHH------HTT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhc---c--CCCCEEEeecccccccccc-----ccchhhhccchhhh------hcc
Confidence 5899999999988662 22222211 1 2588999999998764321 11111111111111 235
Q ss_pred ceEEEecCCCCCCC
Q 014802 362 SRFLFIPGPDDAGP 375 (418)
Q Consensus 362 ~~~v~vPG~~Dp~~ 375 (418)
.+++++|||||...
T Consensus 66 ~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 66 IPVYFILGNHDYYS 79 (200)
T ss_dssp TTEEEEE-TTSSHH
T ss_pred ccccccccccccce
Confidence 79999999999853
No 29
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.09 E-value=0.0012 Score=68.31 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=46.6
Q ss_pred cEEEEEccccCcHH----HHHHHHHHHhcccC--CCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCc
Q 014802 285 MFVILSDIWLDNEE----VMGKLEVVLDGFES--VEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRL 358 (418)
Q Consensus 285 ~~v~lSDv~ld~~~----~l~~L~~l~~~~~~--~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l 358 (418)
+++.+||+|||... ..+..+.++.++.. .+..|.++|++||+.+.... + ..-.+.|.++-..|++
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p-~----~~a~~~~~~~l~~L~~---- 72 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSP-P----SYARELYNRFVVNLQQ---- 72 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCC-c----HHHHHHHHHHHHHHHh----
Confidence 57889999999642 11223333333321 12368999999999986421 1 1111223333233332
Q ss_pred cccceEEEecCCCCCCC
Q 014802 359 KEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 359 ~~~~~~v~vPG~~Dp~~ 375 (418)
..+++++||||||...
T Consensus 73 -~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 73 -TGCQLVVLAGNHDSVA 88 (407)
T ss_pred -cCCcEEEEcCCCCChh
Confidence 1368999999999754
No 30
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0012 Score=67.67 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=50.5
Q ss_pred cEEEEEccccCcH-----HHHHHHHHHHhcccC--CCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCC
Q 014802 285 MFVILSDIWLDNE-----EVMGKLEVVLDGFES--VEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357 (418)
Q Consensus 285 ~~v~lSDv~ld~~-----~~l~~L~~l~~~~~~--~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~ 357 (418)
+|+-+||.|||.. .-.+...+.|.+.-+ .+..+.++|++||..+.... +......+.+.|.+|..
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~P-s~~a~~~~~~~l~~l~~------- 73 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNP-SPRALKLFLEALRRLKD------- 73 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCC-CHHHHHHHHHHHHHhcc-------
Confidence 4777999999932 112333333333311 12256899999999987432 22334444555554433
Q ss_pred ccccceEEEecCCCCCCCC
Q 014802 358 LKEHSRFLFIPGPDDAGPS 376 (418)
Q Consensus 358 l~~~~~~v~vPG~~Dp~~~ 376 (418)
..++++.+|||||+...
T Consensus 74 --~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 74 --AGIPVVVIAGNHDSPSR 90 (390)
T ss_pred --CCCcEEEecCCCCchhc
Confidence 36899999999999653
No 31
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0028 Score=60.40 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=60.6
Q ss_pred EEEEccccC--cHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 287 VILSDIWLD--NEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 287 v~lSDv~ld--~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+||||+||+ .|..-+.|..++..... ...++.++||+++.=.... +-.+...+-..+|-.+-. +.+++
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~---~ad~lyilGDifd~w~g~~-~~~~~~~~V~~~l~~~a~------~G~~v 70 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAA---QADALYILGDIFDGWIGDD-EPPQLHRQVAQKLLRLAR------KGTRV 70 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccc---cCcEEEEechhhhhhhcCC-cccHHHHHHHHHHHHHHh------cCCeE
Confidence 489999999 33444566667665432 1369999999998622111 111222233333333222 45899
Q ss_pred EEecCCCCCCCCCCCCCCCcchHHHHHHHhhCCCeEEecCCcEEEEccc
Q 014802 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRLNFLIT 413 (418)
Q Consensus 365 v~vPG~~Dp~~~~~lPqpplp~~~~~~~~~~~~~~~~~sNP~ri~~~~~ 413 (418)
++||||+|--. .+++.+....+.++.-|+.+.++++
T Consensus 71 ~~i~GN~Dfll-------------~~~f~~~~g~~~l~~~~~~~~l~g~ 106 (237)
T COG2908 71 YYIHGNHDFLL-------------GKRFAQEAGGMTLLPDPIVLDLYGK 106 (237)
T ss_pred EEecCchHHHH-------------HHHHHhhcCceEEcCcceeeeecCc
Confidence 99999999421 2333334445666666666666665
No 32
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.06 E-value=0.0024 Score=59.18 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=45.2
Q ss_pred CcEEEEEccccCcHH-----------HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 014802 284 DMFVILSDIWLDNEE-----------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~-----------~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l 352 (418)
-+++++||+|++... +.+.+..++. . ..|..+|+.||+++..... .+..+.++++.+.+
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~d~vv~~GDl~~~~~~~-----~~~~~~~~~~~~~l 72 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLD---A--EKPDLVVLTGDLITGENTN-----DNSTSALDKAVSPM 72 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHh---h--cCCCEEEECCccccCCCCc-----hHHHHHHHHHHHHH
Confidence 468899999997753 2223333322 2 2588999999998754321 11223333333333
Q ss_pred hcCCCccccceEEEecCCCCC
Q 014802 353 AAHPRLKEHSRFLFIPGPDDA 373 (418)
Q Consensus 353 ~~~p~l~~~~~~v~vPG~~Dp 373 (418)
.+ ..+++.++|||||.
T Consensus 73 ~~-----~~~p~~~~~GNHD~ 88 (199)
T cd07383 73 ID-----RKIPWAATFGNHDG 88 (199)
T ss_pred HH-----cCCCEEEECccCCC
Confidence 32 24799999999994
No 33
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.04 E-value=0.0018 Score=62.57 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=53.5
Q ss_pred cEEEEEccccC--cHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 285 MFVILSDIWLD--NEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 285 ~~v~lSDv~ld--~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+++-+||+|++ ....-+.+..++..+... .|..+|+.||++... ..+.++.+.++|. .+....
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~--~~D~~v~tGDl~~~~----------~~~~~~~~~~~l~---~~~~~~ 66 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQL--KPDLLVVTGDLTNDG----------EPEEYRRLKELLA---RLELPA 66 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcC--CCCEEEEccCcCCCC----------CHHHHHHHHHHHh---hccCCC
Confidence 46789999999 556666777777777633 689999999998652 1233344555555 122346
Q ss_pred eEEEecCCCCCCC
Q 014802 363 RFLFIPGPDDAGP 375 (418)
Q Consensus 363 ~~v~vPG~~Dp~~ 375 (418)
++++||||||...
T Consensus 67 ~~~~vpGNHD~~~ 79 (301)
T COG1409 67 PVIVVPGNHDARV 79 (301)
T ss_pred ceEeeCCCCcCCc
Confidence 8999999999754
No 34
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.03 E-value=0.00086 Score=61.12 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.|..+|++||+++..... ....+.+.+..+..++.........+.+++||||||.+.
T Consensus 45 ~pd~vi~lGDl~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 45 KPDVVLFLGDLFDGGRIA---DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCCEEEEeccccCCcEeC---CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 699999999999864322 113455555556565543210012578999999999987
No 35
>PRK09453 phosphodiesterase; Provisional
Probab=97.01 E-value=0.0019 Score=59.14 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=44.4
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|.+- .+++.+++.+.+. .|..+|++||+++.-...... ..|. .+++.+.|.+. ...+
T Consensus 2 ri~viSD~Hg~~----~~~~~~l~~~~~~--~~d~ii~lGDi~~~~~~~~~~--~~~~--~~~~~~~l~~~-----~~~v 66 (182)
T PRK09453 2 KLMFASDTHGSL----PATEKALELFAQS--GADWLVHLGDVLYHGPRNPLP--EGYA--PKKVAELLNAY-----ADKI 66 (182)
T ss_pred eEEEEEeccCCH----HHHHHHHHHHHhc--CCCEEEEcccccccCcCCCCc--cccC--HHHHHHHHHhc-----CCce
Confidence 478999999552 3455555555432 578999999998641100000 0110 12344444432 2478
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
++|+||||...
T Consensus 67 ~~V~GNhD~~~ 77 (182)
T PRK09453 67 IAVRGNCDSEV 77 (182)
T ss_pred EEEccCCcchh
Confidence 99999999753
No 36
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=96.96 E-value=0.003 Score=60.21 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=43.5
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
.+|+++||+| ++...+++ +++...+ ..|..+|++||+++... ....|.+.++.|+ ++ ..+
T Consensus 5 ~kIl~iSDiH-gn~~~le~---l~~~~~~--~~~D~vv~~GDl~~~g~-----~~~~~~~~l~~l~----~l-----~~p 64 (224)
T cd07388 5 RYVLATSNPK-GDLEALEK---LVGLAPE--TGADAIVLIGNLLPKAA-----KSEDYAAFFRILG----EA-----HLP 64 (224)
T ss_pred eEEEEEEecC-CCHHHHHH---HHHHHhh--cCCCEEEECCCCCCCCC-----CHHHHHHHHHHHH----hc-----CCc
Confidence 4688999999 55544444 4443322 24789999999987421 1233443333332 21 258
Q ss_pred EEEecCCCCC
Q 014802 364 FLFIPGPDDA 373 (418)
Q Consensus 364 ~v~vPG~~Dp 373 (418)
+++||||||.
T Consensus 65 v~~V~GNhD~ 74 (224)
T cd07388 65 TFYVPGPQDA 74 (224)
T ss_pred eEEEcCCCCh
Confidence 9999999996
No 37
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.90 E-value=0.0026 Score=60.78 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=45.6
Q ss_pred cEEEEEccccCcHHH--HHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 285 MFVILSDIWLDNEEV--MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~--l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+|+++||+|++...+ .+.|..+++...+. .|..+|++||+++.. ....+.++.|.++ ...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~--~~d~vv~~GDl~~~~--------~~~~~~~~~l~~~--------~~~ 62 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ--KIDHLHIAGDISNDF--------QRSLPFIEKLQEL--------KGI 62 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEECCccccch--------hhHHHHHHHHHHh--------cCC
Confidence 478899999974332 22355566655432 488999999998642 1122233333331 136
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
++.+||||||..
T Consensus 63 pv~~v~GNHD~~ 74 (239)
T TIGR03729 63 KVTFNAGNHDML 74 (239)
T ss_pred cEEEECCCCCCC
Confidence 899999999975
No 38
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.90 E-value=0.0029 Score=61.37 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=48.5
Q ss_pred EEEEEccccCcHH--HHHHH-HHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 286 FVILSDIWLDNEE--VMGKL-EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 286 ~v~lSDv~ld~~~--~l~~L-~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
|+.+||+|++... ..... +.+....... .|..+|++||+++......... .+..+..+++-+.+.+... ....
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~--~pd~i~~~GD~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 77 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVI--KPALVLATGDLTDNKTGNKLPS-YQYQEEWQKYYNILKESSV-INKE 77 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhh--CCCEEEEccccccccccCCCcc-cccHHHHHHHHHHHHHhCC-CCcc
Confidence 6789999998652 21122 3344444332 6899999999998643221111 1112222233333333221 2347
Q ss_pred eEEEecCCCCCCC
Q 014802 363 RFLFIPGPDDAGP 375 (418)
Q Consensus 363 ~~v~vPG~~Dp~~ 375 (418)
++..||||||.+.
T Consensus 78 p~~~v~GNHD~~~ 90 (256)
T cd07401 78 KWFDIRGNHDLFN 90 (256)
T ss_pred eEEEeCCCCCcCC
Confidence 8999999999864
No 39
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.86 E-value=0.0017 Score=61.16 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=49.3
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCC--CCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESV--EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~--~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+|+++||+|.......+.++..+++..+. +..|..+|++||+++.... ..+|....+.+..+ .+ ..+
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-----~~~~~~~~~~~~~l-~~-----~~~ 70 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-----DAEWEAADKAFARL-DK-----AGI 70 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-----HHHHHHHHHHHHHH-HH-----cCC
Confidence 58899999997776556565555554321 1258899999999875421 12333322222221 11 246
Q ss_pred eEEEecCCCCCCC
Q 014802 363 RFLFIPGPDDAGP 375 (418)
Q Consensus 363 ~~v~vPG~~Dp~~ 375 (418)
++.++|||||-..
T Consensus 71 p~~~~~GNHD~~~ 83 (214)
T cd07399 71 PYSVLAGNHDLVL 83 (214)
T ss_pred cEEEECCCCcchh
Confidence 8999999999643
No 40
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.85 E-value=0.0034 Score=59.90 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred CcEEEEEccccCcHHHHHH---------HHHHHhcccC--CCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 014802 284 DMFVILSDIWLDNEEVMGK---------LEVVLDGFES--VEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~---------L~~l~~~~~~--~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l 352 (418)
...+++||+||+....+.+ +++.++...+ .+..|..+|++||+...... . ..+ ..+.+++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~--~---~~~----~~~~~~l 85 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK--G---LEW----RFIREFI 85 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC--h---HHH----HHHHHHH
Confidence 4578999999997654322 2233333322 12358999999999865331 1 222 2344445
Q ss_pred hcCCCccccceEEEecCCCCCCC
Q 014802 353 AAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 353 ~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.+. ...+++||||||+..
T Consensus 86 ~~~-----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 86 EVT-----FRDLILIRGNHDALI 103 (225)
T ss_pred Hhc-----CCcEEEECCCCCCcc
Confidence 432 248999999999854
No 41
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.77 E-value=0.0038 Score=64.55 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=52.7
Q ss_pred cEEEEEccccCcHH--------HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHH------
Q 014802 285 MFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ------ 350 (418)
Q Consensus 285 ~~v~lSDv~ld~~~--------~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~------ 350 (418)
+|+.+||.||+-.. ..+.|+++++...+. .|.++|++||+.+..... . ..+....+.|..
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~--~vD~VLiaGDLFd~~~Ps-~---~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ--DVDMILLGGDLFHENKPS-R---KSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc--CCCEEEECCccCCCCCCC-H---HHHHHHHHHHHHhhccCC
Confidence 58889999998432 234566666554432 588999999999875431 1 222222222221
Q ss_pred -----HHhc---------C-------CCccccceEEEecCCCCCCC
Q 014802 351 -----MIAA---------H-------PRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 351 -----~l~~---------~-------p~l~~~~~~v~vPG~~Dp~~ 375 (418)
+|++ | |++-..++|+.|+||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 2221 1 33345799999999999854
No 42
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.76 E-value=0.0056 Score=57.05 Aligned_cols=59 Identities=14% Similarity=0.349 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPR 381 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPq 381 (418)
.|..+|++||+++.... ....++.+.++.+.+++..- ...+++.||||||.|.....|.
T Consensus 42 ~PD~Vi~lGDL~D~G~~---~~~~e~~e~l~Rf~~If~~~----~~~~~~~VpGNHDIG~~~~~~~ 100 (195)
T cd08166 42 QPDIVIFLGDLMDEGSI---ANDDEYYSYVQRFINIFEVP----NGTKIIYLPGDNDIGGEEEDPI 100 (195)
T ss_pred CCCEEEEeccccCCCCC---CCHHHHHHHHHHHHHHhcCC----CCCcEEEECCCCCcCCCCCCcC
Confidence 59999999999987322 22355777777777776643 3679999999999996433343
No 43
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=96.76 E-value=0.0032 Score=56.91 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=39.7
Q ss_pred EEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEE
Q 014802 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v 365 (418)
|+++||+|.+-... ++ .... ...|..+|++||+++... ...+. .+ +.+++. ..++.
T Consensus 1 i~~~sD~H~~~~~~----~~--~~~~--~~~~D~vv~~GDl~~~~~------~~~~~----~~-~~l~~~-----~~p~~ 56 (188)
T cd07392 1 ILAISDIHGDVEKL----EA--IILK--AEEADAVIVAGDITNFGG------KEAAV----EI-NLLLAI-----GVPVL 56 (188)
T ss_pred CEEEEecCCCHHHH----HH--HHhh--ccCCCEEEECCCccCcCC------HHHHH----HH-HHHHhc-----CCCEE
Confidence 46899999875433 22 1122 125889999999986421 11222 22 334432 36799
Q ss_pred EecCCCCCC
Q 014802 366 FIPGPDDAG 374 (418)
Q Consensus 366 ~vPG~~Dp~ 374 (418)
+||||||..
T Consensus 57 ~v~GNHD~~ 65 (188)
T cd07392 57 AVPGNCDTP 65 (188)
T ss_pred EEcCCCCCH
Confidence 999999963
No 44
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.68 E-value=0.0062 Score=58.16 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCcEEEEEccccCcHHHH------------HHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHH
Q 014802 282 ANDMFVILSDIWLDNEEVM------------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLG 349 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~~~l------------~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La 349 (418)
.....+++||+||+-...+ +++.+.++.+.+. ..|..+|+.||+-..-......... -...|.
T Consensus 18 ~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~-~~p~~lIilGD~KH~~~~~~~~e~~----~~~~f~ 92 (235)
T COG1407 18 PLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIER-YGPKRLIILGDLKHEFGKSLRQEKE----EVREFL 92 (235)
T ss_pred ccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHh-cCCCEEEEcCccccccCccccccHH----HHHHHH
Confidence 4567889999999977665 2344444433321 2699999999985432111011111 112233
Q ss_pred HHHhcCCCccccceEEEecCCCCCCCCCCCCCC
Q 014802 350 QMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRC 382 (418)
Q Consensus 350 ~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~lPqp 382 (418)
+.+++ -.+++|+||||+....++|..
T Consensus 93 ~~~~~-------~evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 93 ELLDE-------REVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred HHhcc-------CcEEEEeccCCCccccccccC
Confidence 33332 269999999999987888887
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=96.60 E-value=0.0063 Score=52.72 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=39.6
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|+++||+|.+-. .... ..|..+|++||+++... ..+ ++.+.+.+.+.+ ...+
T Consensus 1 ~i~~isD~H~~~~-----------~~~~--~~~D~vi~~GD~~~~~~------~~~----~~~~~~~l~~~~----~~~~ 53 (135)
T cd07379 1 RFVCISDTHSRHR-----------TISI--PDGDVLIHAGDLTERGT------LEE----LQKFLDWLKSLP----HPHK 53 (135)
T ss_pred CEEEEeCCCCCCC-----------cCcC--CCCCEEEECCCCCCCCC------HHH----HHHHHHHHHhCC----CCeE
Confidence 4788999997644 1111 25789999999986421 122 233445555432 1246
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
++||||||...
T Consensus 54 ~~v~GNHD~~~ 64 (135)
T cd07379 54 IVIAGNHDLTL 64 (135)
T ss_pred EEEECCCCCcC
Confidence 78999999643
No 46
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.59 E-value=0.006 Score=58.18 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=41.3
Q ss_pred EEEEccccCcH------HH----HHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 014802 287 VILSDIWLDNE------EV----MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (418)
Q Consensus 287 v~lSDv~ld~~------~~----l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p 356 (418)
.++||+|+++. .+ .+.++.+..-++.....|..+|++||+++.. ....+.+.++ .|...+
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~------~~~~~~~~l~----~l~~l~ 71 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAM------KLEEAKLDLA----WIDALP 71 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCC------ChHHHHHHHH----HHHhCC
Confidence 45899999951 11 2334444444433323589999999997432 1122222222 333322
Q ss_pred CccccceEEEecCCCCCC
Q 014802 357 RLKEHSRFLFIPGPDDAG 374 (418)
Q Consensus 357 ~l~~~~~~v~vPG~~Dp~ 374 (418)
..+++||||||.+
T Consensus 72 -----~~v~~V~GNHD~~ 84 (232)
T cd07393 72 -----GTKVLLKGNHDYW 84 (232)
T ss_pred -----CCeEEEeCCcccc
Confidence 2478999999974
No 47
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.54 E-value=0.0069 Score=54.78 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=45.7
Q ss_pred EEEEccccCcHHHHH-----------HHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcC
Q 014802 287 VILSDIWLDNEEVMG-----------KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (418)
Q Consensus 287 v~lSDv~ld~~~~l~-----------~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~ 355 (418)
.|+||+||+....+. ..+.+++.+.+....+..+|++||+++.... ..+ .+.+.+.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~------~~~-------~~~l~~~ 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA------GTE-------LELLSRL 68 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh------HHH-------HHHHHhC
Confidence 478999999986543 2445555555432347899999999875211 111 2233332
Q ss_pred CCccccceEEEecCCCCCCC
Q 014802 356 PRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 356 p~l~~~~~~v~vPG~~Dp~~ 375 (418)
+ ..+++||||||...
T Consensus 69 ~-----~~~~~v~GNHD~~~ 83 (168)
T cd07390 69 N-----GRKHLIKGNHDSSL 83 (168)
T ss_pred C-----CCeEEEeCCCCchh
Confidence 2 47999999999865
No 48
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=96.34 E-value=0.0067 Score=53.02 Aligned_cols=58 Identities=17% Similarity=0.363 Sum_probs=34.7
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|++... ++++++... .|..+|++||+++. ++ +.+.+++ .++
T Consensus 2 ki~~~sD~H~~~~~----~~~~~~~~~----~~d~vi~~GDi~~~------------~~----~~~~~~~-------~~~ 50 (156)
T PF12850_consen 2 KIAVISDLHGNLDA----LEAVLEYIN----EPDFVIILGDIFDP------------EE----VLELLRD-------IPV 50 (156)
T ss_dssp EEEEEE--TTTHHH----HHHHHHHHT----TESEEEEES-SCSH------------HH----HHHHHHH-------HEE
T ss_pred EEEEEeCCCCChhH----HHHHHHHhc----CCCEEEECCCchhH------------HH----HHHHHhc-------CCE
Confidence 47899999998774 344544442 38899999998751 22 2233332 279
Q ss_pred EEecCCCCC
Q 014802 365 LFIPGPDDA 373 (418)
Q Consensus 365 v~vPG~~Dp 373 (418)
.+|+||||-
T Consensus 51 ~~v~GNHD~ 59 (156)
T PF12850_consen 51 YVVRGNHDN 59 (156)
T ss_dssp EEE--CCHS
T ss_pred EEEeCCccc
Confidence 999999994
No 49
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=96.23 E-value=0.0095 Score=52.60 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=40.3
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|.+. +.++.+++.+.. +..+|++||+++.... .. +.....+
T Consensus 1 ~i~~isD~H~~~----~~~~~~~~~~~~----~d~ii~~GD~~~~~~~----~~-------------------~~~~~~~ 49 (155)
T cd00841 1 KIGVISDTHGSL----ELLEKALELFGD----VDLIIHAGDVLYPGPL----NE-------------------LELKAPV 49 (155)
T ss_pred CEEEEecCCCCH----HHHHHHHHHhcC----CCEEEECCcccccccc----ch-------------------hhcCCcE
Confidence 478999999664 445555555432 6799999999865321 00 1123578
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
.+|+||||...
T Consensus 50 ~~V~GNhD~~~ 60 (155)
T cd00841 50 IAVRGNCDGEV 60 (155)
T ss_pred EEEeCCCCCcC
Confidence 99999999764
No 50
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=95.97 E-value=0.0094 Score=53.39 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=39.5
Q ss_pred EEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEE
Q 014802 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v 365 (418)
+.++||+|++.......+. .+.. +..|..+|++||++..... ..+.. +... .....+++
T Consensus 1 ~~~iSDlH~~~~~~~~~~~----~~~~-~~~~d~li~~GDi~~~~~~------~~~~~----~~~~------~~~~~~v~ 59 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLL----NFPI-APDADILVLAGDIGYLTDA------PRFAP----LLLA------LKGFEPVI 59 (166)
T ss_pred CceEccccccCcccccccc----ccCC-CCCCCEEEECCCCCCCcch------HHHHH----HHHh------hcCCccEE
Confidence 4589999998753322211 2212 2257899999999864311 11111 2111 12357899
Q ss_pred EecCCCCC
Q 014802 366 FIPGPDDA 373 (418)
Q Consensus 366 ~vPG~~Dp 373 (418)
+||||||.
T Consensus 60 ~v~GNHD~ 67 (166)
T cd07404 60 YVPGNHEF 67 (166)
T ss_pred EeCCCcce
Confidence 99999997
No 51
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.66 E-value=0.073 Score=49.58 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcC-CCc------------cccceEEEecCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH-PRL------------KEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~-p~l------------~~~~~~v~vPG~~Dp~~ 375 (418)
.|.+++++||..++.-. +-.++.+.++.+-+++-.- +.. ...+.++.||||||.|.
T Consensus 44 ~Pd~V~fLGDLfd~~w~----~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 44 KPDAVVVLGDLFSSQWI----DDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred CCCEEEEeccccCCCcc----cHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 69999999999987432 2255666666666665311 111 12489999999999987
No 52
>PHA02239 putative protein phosphatase
Probab=95.64 E-value=0.042 Score=52.71 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=42.8
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|- . .+.|..++..+.....++..+|+.||+++.-- .+ .+.++.|-+++. ....+
T Consensus 2 ~~~~IsDIHG-~---~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~----~s----~~v~~~l~~~~~------~~~~~ 63 (235)
T PHA02239 2 AIYVVPDIHG-E---YQKLLTIMDKINNERKPEETIVFLGDYVDRGK----RS----KDVVNYIFDLMS------NDDNV 63 (235)
T ss_pred eEEEEECCCC-C---HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCC----Ch----HHHHHHHHHHhh------cCCCe
Confidence 3678999994 3 34456666665332113478999999998521 11 123333433332 12468
Q ss_pred EEecCCCCC
Q 014802 365 LFIPGPDDA 373 (418)
Q Consensus 365 v~vPG~~Dp 373 (418)
++++||||.
T Consensus 64 ~~l~GNHE~ 72 (235)
T PHA02239 64 VTLLGNHDD 72 (235)
T ss_pred EEEECCcHH
Confidence 899999986
No 53
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=95.52 E-value=0.037 Score=52.58 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=38.3
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCC------------C-Ccch-HHHHHH---HH
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNL------------S-FHSF-SSLRLQ---FG 346 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~------------~-~~~~-~~~~~~---f~ 346 (418)
.+++-+||++ ++-..+++|-++...- .|.++|+.||.+....-. + ...+ .+=... ++
T Consensus 6 ~kilA~s~~~-g~~e~l~~l~~~~~e~-----~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFR-GDFELLERLVEVIPEK-----GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--T-T-HHHHHHHHHHHHHH-----T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcc-hHHHHHHHHHhhcccc-----CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 4577789976 5555556666555432 588999999998653110 0 0000 011123 33
Q ss_pred HHHHHHhcCCCccccceEEEecCCCCC
Q 014802 347 KLGQMIAAHPRLKEHSRFLFIPGPDDA 373 (418)
Q Consensus 347 ~La~~l~~~p~l~~~~~~v~vPG~~Dp 373 (418)
++-+.|..+ +++...||||+||
T Consensus 80 ~ff~~L~~~-----~~p~~~vPG~~Da 101 (255)
T PF14582_consen 80 KFFRILGEL-----GVPVFVVPGNMDA 101 (255)
T ss_dssp HHHHHHHCC------SEEEEE--TTS-
T ss_pred HHHHHHHhc-----CCcEEEecCCCCc
Confidence 444445543 5899999999998
No 54
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=95.45 E-value=0.015 Score=48.16 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=41.9
Q ss_pred EEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEE
Q 014802 287 VILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLF 366 (418)
Q Consensus 287 v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~ 366 (418)
+++||+|.+......... ..... ...|..+|++||+++..... ....+.. +.. ......++++
T Consensus 1 ~~~gD~h~~~~~~~~~~~--~~~~~--~~~~~~vi~~GD~~~~~~~~---~~~~~~~----~~~------~~~~~~~~~~ 63 (131)
T cd00838 1 AVISDIHGNLEALEAVLE--AALAA--AEKPDFVLVLGDLVGDGPDP---EEVLAAA----LAL------LLLLGIPVYV 63 (131)
T ss_pred CeeecccCCccchHHHHH--HHHhc--ccCCCEEEECCcccCCCCCc---hHHHHHH----HHH------hhcCCCCEEE
Confidence 368999999886655432 11111 23588999999998764321 1111111 111 1234689999
Q ss_pred ecCCCCC
Q 014802 367 IPGPDDA 373 (418)
Q Consensus 367 vPG~~Dp 373 (418)
++||||-
T Consensus 64 ~~GNHDi 70 (131)
T cd00838 64 VPGNHDI 70 (131)
T ss_pred eCCCceE
Confidence 9999994
No 55
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=95.44 E-value=0.087 Score=46.99 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=49.3
Q ss_pred CcEE-EEEEEEEc---c-CC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 178 GRRW-VMGVISQL---E-DG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 178 g~~~-vlGml~~~---~-~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
|+.+ |-||+... . ++ +|.|.|....|++.-.+.. ..+|.+|.-|+|+|.+..+|+|++++|.
T Consensus 51 g~~vrvgG~V~~gSi~~~~~~~~~F~ltD~~~~i~V~Y~G~l--Pd~F~eg~~VVv~G~~~~~g~F~A~~vL 120 (148)
T PRK13254 51 GRRFRLGGLVEKGSVQRGDGLTVRFVVTDGNATVPVVYTGIL--PDLFREGQGVVAEGRLQDGGVFVADEVL 120 (148)
T ss_pred CCeEEEeEEEecCcEEeCCCCEEEEEEEeCCeEEEEEECCCC--CccccCCCEEEEEEEECCCCeEEEEEEE
Confidence 5554 89999651 1 22 5889999999999877653 5689999999999999777899999875
No 56
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=95.34 E-value=0.061 Score=47.82 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=38.2
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+|..... ++.+.++++.. ..|..+|++||+++. +.+ +.+.+. ..++
T Consensus 2 ~i~viSD~H~~~~~-~~~~~~~~~~~----~~~d~ii~~GD~~~~-------------~~~----~~l~~~-----~~~~ 54 (158)
T TIGR00040 2 KILVISDTHGPLRA-TELPVELFNLE----SNVDLVIHAGDLTSP-------------FVL----KEFEDL-----AAKV 54 (158)
T ss_pred EEEEEecccCCcch-hHhHHHHHhhc----cCCCEEEEcCCCCCH-------------HHH----HHHHHh-----CCce
Confidence 47899999965432 34444444321 147899999998721 111 122221 2368
Q ss_pred EEecCCCCCC
Q 014802 365 LFIPGPDDAG 374 (418)
Q Consensus 365 v~vPG~~Dp~ 374 (418)
+.|+||||-.
T Consensus 55 ~~V~GN~D~~ 64 (158)
T TIGR00040 55 IAVRGNNDGE 64 (158)
T ss_pred EEEccCCCch
Confidence 9999999953
No 57
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=95.32 E-value=0.13 Score=44.95 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=45.4
Q ss_pred CCcEE-EEEEEEE-----ccCC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 177 TGRRW-VMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 177 ~g~~~-vlGml~~-----~~~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
.|+.+ |-|++.. .+++ +|.|.|...+|++.-++.. ...|.+|.-|+|+|.+..+|.|++++|.
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~~~~i~V~Y~G~~--Pd~F~eg~~VVv~G~~~~~g~F~A~~lL 120 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGNTLTFTITDGGKEIPVVYTGPL--PDLFREGQGVVVEGRLGEDGVFEATELL 120 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-SS-EEEEEEES----CTT--TTSEEEEEEEECCTSEEEEEEEE
T ss_pred CCceEEEeeEEccCCEEEcCCCCEEEEEEEECCcEEEEEECCCC--CccccCCCeEEEEEEECCCCEEEEEEEE
Confidence 35554 8998873 2222 5889999999999887764 4689999999999999899999999864
No 58
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=95.24 E-value=0.049 Score=53.21 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
..+|+++||.+.+.....+-+..+.+. ...|..+|+.||++...... +..++...++.+..+. ...
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~l~~~----~~~~d~vl~~GDl~~~~~~~---~~~~~~~~~~~~~~~~-------~~~ 69 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDHLEKE----LGNYDAILHVGDLAYADGYN---NGSRWDTFMRQIEPLA-------SYV 69 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHHHHhc----cCCccEEEEcCchhhhcCCc---cchhHHHHHHHHHHHH-------hcC
Confidence 467999999987533333333333332 12588999999998442211 1123333334343332 246
Q ss_pred eEEEecCCCCCCC
Q 014802 363 RFLFIPGPDDAGP 375 (418)
Q Consensus 363 ~~v~vPG~~Dp~~ 375 (418)
++..+|||||-..
T Consensus 70 P~~~~~GNHD~~~ 82 (294)
T cd00839 70 PYMVTPGNHEADY 82 (294)
T ss_pred CcEEcCccccccc
Confidence 8999999999754
No 59
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.83 E-value=0.075 Score=47.61 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=45.5
Q ss_pred CcEEEEEccccCcHHHHH--------HH-HHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 014802 284 DMFVILSDIWLDNEEVMG--------KL-EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA 354 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~--------~L-~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~ 354 (418)
.++-|+||.|++.+.+.. .. ..+++.|.+.-.+-..+-+.|||+++.- .- .++..+++.
T Consensus 4 ~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n-----~~-------~~a~~Iler 71 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGAN-----RE-------RAAGLILER 71 (186)
T ss_pred eEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccc-----hh-------hHHHHHHHH
Confidence 368899999999986642 11 2233444432223358889999987631 11 113333443
Q ss_pred CCCccccceEEEecCCCCCCC
Q 014802 355 HPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 355 ~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.+ -..+|||||||++.
T Consensus 72 Ln-----Grkhlv~GNhDk~~ 87 (186)
T COG4186 72 LN-----GRKHLVPGNHDKCH 87 (186)
T ss_pred cC-----CcEEEeeCCCCCCc
Confidence 33 35699999999965
No 60
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=94.68 E-value=0.11 Score=50.58 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
.|..+|+.||+++.... ....++.+.++.+.+++... .....+..||||||-+-
T Consensus 45 ~PD~vv~lGDL~d~G~~---~~~~~~~~~~~rf~~i~~~~---~~~~pv~~VpGNHDig~ 98 (257)
T cd08163 45 KPDSTIFLGDLFDGGRD---WADEYWKKEYNRFMRIFDPS---PGRKMVESLPGNHDIGF 98 (257)
T ss_pred CCCEEEEecccccCCee---CcHHHHHHHHHHHHHHhcCC---CccceEEEeCCCcccCC
Confidence 59999999999886221 12244555666666666542 23468999999999865
No 61
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.67 E-value=0.12 Score=49.01 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=42.1
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
-++++++|+|-+. ..+.++......+ .+.++|++||++.- ..+.. ..-.+.. .+..+.. ...+
T Consensus 4 mkil~vtDlHg~~-~~~~k~~~~~~~~-----~~D~lviaGDlt~~--~~~~~--~~~~~~~-~~e~l~~------~~~~ 66 (226)
T COG2129 4 MKILAVTDLHGSE-DSLKKLLNAAADI-----RADLLVIAGDLTYF--HFGPK--EVAEELN-KLEALKE------LGIP 66 (226)
T ss_pred ceEEEEeccccch-HHHHHHHHHHhhc-----cCCEEEEecceehh--hcCch--HHHHhhh-HHHHHHh------cCCe
Confidence 3578899999554 3445555454433 47799999999811 11110 1111110 1222222 3579
Q ss_pred EEEecCCCCC
Q 014802 364 FLFIPGPDDA 373 (418)
Q Consensus 364 ~v~vPG~~Dp 373 (418)
++.||||.||
T Consensus 67 v~avpGNcD~ 76 (226)
T COG2129 67 VLAVPGNCDP 76 (226)
T ss_pred EEEEcCCCCh
Confidence 9999999999
No 62
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=94.66 E-value=0.11 Score=47.56 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=39.4
Q ss_pred EEEEEccccCcHH--HHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 286 FVILSDIWLDNEE--VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 286 ~v~lSDv~ld~~~--~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
|.|+||.||+... ..+.+.++++. ..+..+|.|||+++. + ..+.+.++ ...
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~-----~~~d~iih~GDi~~~-------------~----~~~~l~~~-----~~~ 54 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP-----GKIQHVLCTGNLCSK-------------E----TYDYLKTI-----APD 54 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc-----CCCCEEEECCCCCCH-------------H----HHHHHHhh-----CCc
Confidence 7899999998753 22345555543 146799999998751 1 11222221 125
Q ss_pred EEEecCCCCCC
Q 014802 364 FLFIPGPDDAG 374 (418)
Q Consensus 364 ~v~vPG~~Dp~ 374 (418)
+..|.||+|..
T Consensus 55 ~~~V~GN~D~~ 65 (178)
T cd07394 55 VHIVRGDFDEN 65 (178)
T ss_pred eEEEECCCCcc
Confidence 88999999953
No 63
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=94.01 E-value=0.15 Score=47.68 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=40.1
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+++++||+| ++. ++|++++...... ..+..+|++||+++.- ..+ .+.++ +|.+ ..+
T Consensus 2 ri~~isDiH-g~~---~~l~~~l~~~~~~-~~~d~~~~~GD~v~~g----~~~----~~~~~----~l~~-------~~~ 57 (207)
T cd07424 2 RDFVVGDIH-GHY---SLLQKALDAVGFD-PARDRLISVGDLIDRG----PES----LACLE----LLLE-------PWF 57 (207)
T ss_pred CEEEEECCC-CCH---HHHHHHHHHcCCC-CCCCEEEEeCCcccCC----CCH----HHHHH----HHhc-------CCE
Confidence 588999999 554 4555566554211 1367999999998752 111 12222 2221 257
Q ss_pred EEecCCCCC
Q 014802 365 LFIPGPDDA 373 (418)
Q Consensus 365 v~vPG~~Dp 373 (418)
++|+||||.
T Consensus 58 ~~v~GNhe~ 66 (207)
T cd07424 58 HAVRGNHEQ 66 (207)
T ss_pred EEeECCChH
Confidence 899999996
No 64
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=93.77 E-value=0.27 Score=46.13 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=40.8
Q ss_pred EEEEccccCcHHHHHHHHHHHhccc--CC----CCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccc
Q 014802 287 VILSDIWLDNEEVMGKLEVVLDGFE--SV----EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (418)
Q Consensus 287 v~lSDv~ld~~~~l~~L~~l~~~~~--~~----~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~ 360 (418)
+++||+|=+ +++|+.++.... +. ...+..+|++||+++.- ..+ ...-+.+.+|.....+ .
T Consensus 1 ~vi~DIHG~----~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG----~~~-~~vl~~l~~l~~~~~~-----~ 66 (208)
T cd07425 1 VAIGDLHGD----LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRG----PDV-IEILWLLYKLEQEAAK-----A 66 (208)
T ss_pred CEEeCccCC----HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCC----cCH-HHHHHHHHHHHHHHHh-----c
Confidence 468999944 344555554332 10 12467999999999852 111 1111222223222111 2
Q ss_pred cceEEEecCCCCCC
Q 014802 361 HSRFLFIPGPDDAG 374 (418)
Q Consensus 361 ~~~~v~vPG~~Dp~ 374 (418)
..++++++||||-.
T Consensus 67 ~~~v~~l~GNHE~~ 80 (208)
T cd07425 67 GGKVHFLLGNHELM 80 (208)
T ss_pred CCeEEEeeCCCcHH
Confidence 35899999999974
No 65
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=93.50 E-value=0.19 Score=48.62 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=44.6
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|++++|.-.........+...+..+.+. ..|..+|++||++..-+... .....+.+.|+++-..+ ...+++
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~~-~~~~~~~~~~~~~~~~~------~~~~P~ 73 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAE-LGPDFILSLGDNFYDDGVGS-VDDPRFETTFEDVYSAP------SLQVPW 73 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHh-cCCCEEEeCCCccccCCCCC-CcchHHHHHHHHHccch------hhcCCe
Confidence 47888997543122223333333333221 26889999999874322111 11133444444432222 135799
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
..+|||||-..
T Consensus 74 ~~v~GNHD~~~ 84 (277)
T cd07378 74 YLVLGNHDYSG 84 (277)
T ss_pred EEecCCcccCC
Confidence 99999999763
No 66
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=93.42 E-value=0.23 Score=47.79 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=38.9
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|+++||+|.+-.. . ....+.. ..|..+|++||++... .+ +.+.|.+++ .++
T Consensus 2 rIa~isDiHg~~~~--~-~~~~l~~-----~~pD~Vl~~GDi~~~~-----------~~----~~~~l~~l~-----~p~ 53 (238)
T cd07397 2 RIAIVGDVHGQWDL--E-DIKALHL-----LQPDLVLFVGDFGNES-----------VQ----LVRAISSLP-----LPK 53 (238)
T ss_pred EEEEEecCCCCchH--H-HHHHHhc-----cCCCEEEECCCCCcCh-----------HH----HHHHHHhCC-----CCe
Confidence 58899999965332 1 1112222 1488999999996321 11 222344332 468
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
.+|+||||-+.
T Consensus 54 ~~V~GNHD~~~ 64 (238)
T cd07397 54 AVILGNHDAWY 64 (238)
T ss_pred EEEcCCCcccc
Confidence 89999999876
No 67
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=93.28 E-value=0.31 Score=43.91 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=48.6
Q ss_pred CcEE-EEEEEEE-----ccCC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 178 GRRW-VMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 178 g~~~-vlGml~~-----~~~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
|+.+ |-||+.. ..++ .|.|.|..+.|.+.-++.. ..+|.||.=|+|+|.+..+|+|++++|.
T Consensus 57 g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gil--PDlFrEG~gVVveG~~~~~g~F~A~evL 127 (159)
T PRK13150 57 GQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGIL--PDLFREGQGVVVQGTLEKGNHVLAHEVL 127 (159)
T ss_pred CCEEEEeeEEeCCcEEECCCCcEEEEEEEcCCcEEEEEEeccC--CccccCCCeEEEEEEECCCCEEEEeEEE
Confidence 5555 7777764 2333 5779999999999766543 5799999999999999778999999875
No 68
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.14 E-value=0.18 Score=49.80 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=48.5
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
-++|.+||+|..... +...+++....+. .|..+|+.||++++.. .. ....+++.|++ |.+.-.
T Consensus 45 ~~iv~lSDlH~~~~~--~~~~~~~~~i~~~--~~DlivltGD~~~~~~---~~-------~~~~~~~~L~~---L~~~~g 107 (284)
T COG1408 45 LKIVQLSDLHSLPFR--EEKLALLIAIANE--LPDLIVLTGDYVDGDR---PP-------GVAALALFLAK---LKAPLG 107 (284)
T ss_pred eEEEEeehhhhchhh--HHHHHHHHHHHhc--CCCEEEEEeeeecCCC---CC-------CHHHHHHHHHh---hhccCC
Confidence 459999999999887 3333344444332 4699999999998610 11 11223444442 344568
Q ss_pred EEEecCCCCCCC
Q 014802 364 FLFIPGPDDAGP 375 (418)
Q Consensus 364 ~v~vPG~~Dp~~ 375 (418)
++.|.||||=+.
T Consensus 108 v~av~GNHd~~~ 119 (284)
T COG1408 108 VFAVLGNHDYGV 119 (284)
T ss_pred EEEEeccccccc
Confidence 999999999876
No 69
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=92.74 E-value=0.42 Score=36.28 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=36.4
Q ss_pred EEEEEEEEc-cCC----cEEEeeCCcEEEEEeccc--cccceeeccCcEEEEEEEEe
Q 014802 181 WVMGVISQL-EDG----HFYLEDLAASVEIDLSKA--KITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 181 ~vlGml~~~-~~g----~~~LED~tG~I~Ldls~~--~~~~g~~~~g~vV~veG~~~ 230 (418)
.|.|++... ..+ .+.|+|.||+|.+.+-.. ......+.+|++|.|+|...
T Consensus 2 ~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~ 58 (75)
T PF01336_consen 2 TVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVRGKVK 58 (75)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEEEEEE
Confidence 477888876 332 256999999999987761 11245678999999999975
No 70
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=92.36 E-value=0.49 Score=42.67 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=48.2
Q ss_pred CcEE-EEEEEEE-----ccCC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 178 GRRW-VMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 178 g~~~-vlGml~~-----~~~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
|+.+ |-||+.. ..++ .|.|-|....|++.-++.. ..+|.||.=|+|+|.+..+|+|++++|.
T Consensus 57 g~~iRvgG~V~~GSi~r~~~~l~v~F~vtD~~~~v~V~Y~Gil--PDlFrEG~gVVveG~~~~~g~F~A~~vL 127 (160)
T PRK13165 57 GQRLRVGGMVMPGSVQRDPNSLKVSFTLYDAGGSVTVTYEGIL--PDLFREGQGIVAQGVLEEGNHIEAKEVL 127 (160)
T ss_pred CCEEEEeeEEeCCcEEECCCCeEEEEEEEcCCeEEEEEEcccC--CccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 5555 7787764 2333 5778999889988766543 5799999999999999777999999875
No 71
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=92.27 E-value=0.54 Score=46.69 Aligned_cols=74 Identities=22% Similarity=0.436 Sum_probs=41.7
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCC----CCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccc
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESV----EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~----~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~ 360 (418)
.++++|||| +.... |+.+|..+... ......+|++||+++.-- ++ ++.++-|..+...+|.
T Consensus 3 ~iyaIGDIH-G~~d~---L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGP----dS----~eVld~L~~l~~~~~~--- 67 (304)
T cd07421 3 VVICVGDIH-GYISK---LNNLWLNLQSALGPSDFASALVIFLGDYCDRGP----ET----RKVIDFLISLPEKHPK--- 67 (304)
T ss_pred eEEEEEecc-CCHHH---HHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCC----CH----HHHHHHHHHhhhcccc---
Confidence 477899999 44433 33344433221 112347999999998621 11 2233334443333432
Q ss_pred cceEEEecCCCCCC
Q 014802 361 HSRFLFIPGPDDAG 374 (418)
Q Consensus 361 ~~~~v~vPG~~Dp~ 374 (418)
..++++.||||-.
T Consensus 68 -~~vv~LrGNHE~~ 80 (304)
T cd07421 68 -QRHVFLCGNHDFA 80 (304)
T ss_pred -cceEEEecCChHH
Confidence 2578999999964
No 72
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=92.23 E-value=0.53 Score=42.23 Aligned_cols=61 Identities=21% Similarity=0.365 Sum_probs=47.0
Q ss_pred CcEE-EEEEEEE-----ccCC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 178 GRRW-VMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 178 g~~~-vlGml~~-----~~~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
++.+ +=||+.. ..++ +|.+.|....|++.-++.. ..+|.||.=|+++|.+. +|+|+++++.
T Consensus 51 ~~~~RlGG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gil--PDlFrEGqgVVaeG~~~-~g~F~A~~vL 120 (155)
T PRK13159 51 YQQFRLGGMVKAGSIQRAADSLKVSFTVIDKNAATQVEYTGIL--PDLFRDNQSVIANGRMQ-GGRFVANEVL 120 (155)
T ss_pred CCeEEEccEEecCcEEEcCCCcEEEEEEEcCCcEEEEEEccCC--CccccCCCeEEEEEEEc-CCEEEEeEEE
Confidence 3444 6677553 2333 5789999999999877643 57999999999999995 7999999975
No 73
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.57 Score=41.55 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=47.2
Q ss_pred CCcEE-EEEEEEEc-----cCC---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 177 TGRRW-VMGVISQL-----EDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 177 ~g~~~-vlGml~~~-----~~g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
+|+++ +-||+-.- .++ +|.+.|...+|++.-.+.. ..+|.||.-|+++|.+...|+|++.++-
T Consensus 50 ~G~rlR~GGlV~~GSv~R~~~~~~v~F~vtD~~~~v~V~Y~GiL--PDLFREGQgVVa~G~~~~~~~f~A~~vL 121 (153)
T COG2332 50 TGQRLRLGGLVEAGSVQRDPGSLKVSFVVTDGNKSVTVSYEGIL--PDLFREGQGVVAEGQLQGGGVFEAKEVL 121 (153)
T ss_pred CCcEEEEeeeEeeceEEecCCCcEEEEEEecCCceEEEEEeccC--chhhhcCCeEEEEEEecCCCEEEeeehh
Confidence 46776 77777541 222 3667888888888766543 5799999999999999666899999875
No 74
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=92.05 E-value=0.24 Score=46.73 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=29.1
Q ss_pred CCCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCC
Q 014802 282 ANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSH 329 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~ 329 (418)
...++.++||+|=. +++|..+|+...-. .....+|++||+++.
T Consensus 15 ~~~ri~vigDIHG~----~~~L~~lL~~i~~~-~~~D~li~lGDlvDr 57 (218)
T PRK11439 15 QWRHIWLVGDIHGC----FEQLMRKLRHCRFD-PWRDLLISVGDLIDR 57 (218)
T ss_pred CCCeEEEEEcccCC----HHHHHHHHHhcCCC-cccCEEEEcCcccCC
Confidence 34578999999943 34555566655321 134689999999986
No 75
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=92.03 E-value=0.46 Score=46.71 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=39.5
Q ss_pred EEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEE
Q 014802 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v 365 (418)
++++|||| +. +++|..++....- +..+..+|++||+++.- .++. +.+ ++|.+. ...++
T Consensus 3 ~~vIGDIH-G~---~~~l~~ll~~~~~-~~~~D~li~lGDlVdrG----p~s~----~vl----~~l~~l-----~~~~~ 60 (275)
T PRK00166 3 TYAIGDIQ-GC---YDELQRLLEKIDF-DPAKDTLWLVGDLVNRG----PDSL----EVL----RFVKSL-----GDSAV 60 (275)
T ss_pred EEEEEccC-CC---HHHHHHHHHhcCC-CCCCCEEEEeCCccCCC----cCHH----HHH----HHHHhc-----CCCeE
Confidence 67899999 33 4455556655421 11356899999999852 1221 111 122222 23688
Q ss_pred EecCCCCC
Q 014802 366 FIPGPDDA 373 (418)
Q Consensus 366 ~vPG~~Dp 373 (418)
+|.||||-
T Consensus 61 ~VlGNHD~ 68 (275)
T PRK00166 61 TVLGNHDL 68 (275)
T ss_pred EEecChhH
Confidence 99999996
No 76
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=91.61 E-value=0.53 Score=44.61 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEEccccCcHHHHHHHHHHHhcccCCC------CCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccc
Q 014802 287 VILSDIWLDNEEVMGKLEVVLDGFESVE------VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (418)
Q Consensus 287 v~lSDv~ld~~~~l~~L~~l~~~~~~~~------~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~ 360 (418)
.++|||| +. ++.|..+++...-.. .+...+|++||.++.- .++ .+.++.|.++..
T Consensus 2 ~vIGDIH-G~---~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG----p~S----~~vl~~l~~l~~------- 62 (222)
T cd07413 2 DFIGDIH-GH---AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG----PEI----RELLEIVKSMVD------- 62 (222)
T ss_pred EEEEecc-CC---HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC----CCH----HHHHHHHHHhhc-------
Confidence 5789999 33 445555555542210 1235899999999862 111 122333333221
Q ss_pred cceEEEecCCCCC
Q 014802 361 HSRFLFIPGPDDA 373 (418)
Q Consensus 361 ~~~~v~vPG~~Dp 373 (418)
...+++|-||||-
T Consensus 63 ~~~~~~l~GNHE~ 75 (222)
T cd07413 63 AGHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEEccCcH
Confidence 2368889999995
No 77
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=91.33 E-value=0.48 Score=46.11 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=39.3
Q ss_pred EEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEE
Q 014802 287 VILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLF 366 (418)
Q Consensus 287 v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~ 366 (418)
.++|||| + .+++|+.+++.+.-. .....+|++||+++.- .++. +.++ +|.+. ...+++
T Consensus 2 yvIGDIH-G---~~~~L~~LL~~i~~~-~~~D~Li~lGDlVdRG----p~s~----evl~----~l~~l-----~~~v~~ 59 (257)
T cd07422 2 YAIGDIQ-G---CYDELQRLLEKINFD-PAKDRLWLVGDLVNRG----PDSL----ETLR----FVKSL-----GDSAKT 59 (257)
T ss_pred EEEECCC-C---CHHHHHHHHHhcCCC-CCCCEEEEecCcCCCC----cCHH----HHHH----HHHhc-----CCCeEE
Confidence 5789999 3 345666666665321 1346999999999852 1221 1122 22221 136889
Q ss_pred ecCCCCC
Q 014802 367 IPGPDDA 373 (418)
Q Consensus 367 vPG~~Dp 373 (418)
|.||||.
T Consensus 60 VlGNHD~ 66 (257)
T cd07422 60 VLGNHDL 66 (257)
T ss_pred EcCCchH
Confidence 9999996
No 78
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=90.95 E-value=0.66 Score=43.28 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=41.0
Q ss_pred EEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEe
Q 014802 288 ILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFI 367 (418)
Q Consensus 288 ~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~v 367 (418)
++||+| ++. ..|..+++.+... .+..+|++||+++.-- .+ .+.++.+..+.. . ...++++
T Consensus 2 ~igDiH-g~~---~~l~~~l~~~~~~--~~d~li~lGD~vdrg~----~~----~~~l~~l~~~~~----~--~~~~~~l 61 (225)
T cd00144 2 VIGDIH-GCL---DDLLRLLEKIGFP--PNDKLIFLGDYVDRGP----DS----VEVIDLLLALKI----L--PDNVILL 61 (225)
T ss_pred EEeCCC-CCH---HHHHHHHHHhCCC--CCCEEEEECCEeCCCC----Cc----HHHHHHHHHhcC----C--CCcEEEE
Confidence 689999 443 4555666655432 4679999999998621 11 122222322211 1 3479999
Q ss_pred cCCCCCC
Q 014802 368 PGPDDAG 374 (418)
Q Consensus 368 PG~~Dp~ 374 (418)
.||||-.
T Consensus 62 ~GNHe~~ 68 (225)
T cd00144 62 RGNHEDM 68 (225)
T ss_pred ccCchhh
Confidence 9999974
No 79
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=90.93 E-value=0.8 Score=43.60 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=40.8
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCC--C------CCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESV--E------VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~--~------~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p 356 (418)
++.++||||= .+++|..+|+...-. + .....+|++||+++.-- ++. +.++.|-++..
T Consensus 2 ~i~vigDIHG----~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~----~s~----evl~~l~~l~~--- 66 (234)
T cd07423 2 PFDIIGDVHG----CYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGP----DSP----EVLRLVMSMVA--- 66 (234)
T ss_pred CeEEEEECCC----CHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCC----CHH----HHHHHHHHHhh---
Confidence 5789999993 345566666654211 1 02468999999998521 111 22222222211
Q ss_pred CccccceEEEecCCCCC
Q 014802 357 RLKEHSRFLFIPGPDDA 373 (418)
Q Consensus 357 ~l~~~~~~v~vPG~~Dp 373 (418)
...+++|-||||-
T Consensus 67 ----~~~~~~v~GNHE~ 79 (234)
T cd07423 67 ----AGAALCVPGNHDN 79 (234)
T ss_pred ----CCcEEEEECCcHH
Confidence 1357899999995
No 80
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=90.37 E-value=2.3 Score=35.56 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=42.6
Q ss_pred cceecccccC-CCCc-EEEEEEEEEc-cCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEee
Q 014802 166 EISTIQSLVG-QTGR-RWVMGVISQL-EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (418)
Q Consensus 166 ~it~I~~Llg-~~g~-~~vlGml~~~-~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~ 231 (418)
..++++.++- .+++ +.+=|-|.+. .+.+|...|.||+|++.|.+.....--++++.-|-+.|++..
T Consensus 21 ~~~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 21 TVTTVAQAKNAKDDTPVTLEGNIVKQLGDDKYLFRDATGEIEVEIDDDVWRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp ----HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEE
T ss_pred CeEeHHHHhhCcCCCeEEEEEEEEEEecCCEEEEECCCCcEEEEEChhhcCCcccCCCCEEEEEEEEeC
Confidence 4566666543 3444 4589988774 677899999999999999876554346789999999999853
No 81
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=90.32 E-value=0.47 Score=44.87 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 014802 282 ANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~ 361 (418)
...++.++||+|= + +++|+.++..+.-. .....+|++||+++.- .++. +.++ ++.+
T Consensus 13 ~~~ri~visDiHg-~---~~~l~~~l~~~~~~-~~~d~l~~lGD~vdrG----~~~~----~~l~----~l~~------- 68 (218)
T PRK09968 13 HYRHIWVVGDIHG-E---YQLLQSRLHQLSFC-PETDLLISVGDNIDRG----PESL----NVLR----LLNQ------- 68 (218)
T ss_pred CCCeEEEEEeccC-C---HHHHHHHHHhcCCC-CCCCEEEECCCCcCCC----cCHH----HHHH----HHhh-------
Confidence 3357999999993 3 45566666655311 1346999999999851 1111 2222 2221
Q ss_pred ceEEEecCCCCC
Q 014802 362 SRFLFIPGPDDA 373 (418)
Q Consensus 362 ~~~v~vPG~~Dp 373 (418)
..++.|.||||-
T Consensus 69 ~~~~~v~GNHE~ 80 (218)
T PRK09968 69 PWFISVKGNHEA 80 (218)
T ss_pred CCcEEEECchHH
Confidence 247899999995
No 82
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=90.30 E-value=1.1 Score=46.42 Aligned_cols=55 Identities=15% Similarity=0.389 Sum_probs=38.6
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~~~ 377 (418)
.|.+.+|+||..|+-...+. +++++.++.+-.+... ..+.+++-+|||||-|-..
T Consensus 93 kPdvvffLGDLfDeG~~~~~---eEf~~~~~RfkkIf~~----k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662|consen 93 KPDVVFFLGDLFDEGQWAGD---EEFKKRYERFKKIFGR----KGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred CCCEEEEeccccccCccCCh---HHHHHHHHHHHHhhCC----CCCCeeEEeCCcccccccc
Confidence 59999999999995322222 4555555556555431 2578999999999998754
No 83
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=89.85 E-value=1.9 Score=33.24 Aligned_cols=60 Identities=30% Similarity=0.393 Sum_probs=40.6
Q ss_pred EEEEEEEEcc---CCc--EEEeeCCcEEEEEeccccc--cceeeccCcEEEEEEEEeeC---C--eEEEEEe
Q 014802 181 WVMGVISQLE---DGH--FYLEDLAASVEIDLSKAKI--TTGFFTENTIVVAEGEMLVD---G--IFQVITC 240 (418)
Q Consensus 181 ~vlGml~~~~---~g~--~~LED~tG~I~Ldls~~~~--~~g~~~~g~vV~veG~~~~~---G--~F~V~~i 240 (418)
++.|+++... .|. +.|+|.+|.+++.+-.... ....+.+|.+|+++|....+ | .+.|.+|
T Consensus 3 ~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i 74 (78)
T cd04489 3 WVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEI 74 (78)
T ss_pred EEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Confidence 4678877642 342 4489999999986543322 24678899999999997522 3 3666655
No 84
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=88.52 E-value=1.6 Score=42.71 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=39.8
Q ss_pred EEEEEccccCcHHHHHHHHHHHhcccCC-CCCCeEEEEEcCCCCCCCCCCCcch---HHHHHHHHHHHHHHhcCCCcccc
Q 014802 286 FVILSDIWLDNEEVMGKLEVVLDGFESV-EVVPSLFVFMGNFCSHPCNLSFHSF---SSLRLQFGKLGQMIAAHPRLKEH 361 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~L~~l~~~~~~~-~~~p~~~Vl~Gnf~s~~~~~~~~~~---~~~~~~f~~La~~l~~~p~l~~~ 361 (418)
|++.+|+|=+=....+.+ +.++.. ..++.++|+||||....-..+.+.. ..|+ ....+..+++.... ..
T Consensus 1 i~v~Gd~HG~~~~~~~~~----~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~-~~~~f~~~~~g~~~--~p 73 (262)
T cd00844 1 IAVEGCCHGELDKIYETL----EKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYR-KMGDFYKYYSGEKK--AP 73 (262)
T ss_pred CEEEecCCccHHHHHHHH----HHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhh-hhhhHHHHhcCCcc--CC
Confidence 467899985322222222 222211 1257899999999532111010010 1122 22334445543221 23
Q ss_pred ceEEEecCCCCC
Q 014802 362 SRFLFIPGPDDA 373 (418)
Q Consensus 362 ~~~v~vPG~~Dp 373 (418)
...+||+||||.
T Consensus 74 ~~t~fi~GNHE~ 85 (262)
T cd00844 74 ILTIFIGGNHEA 85 (262)
T ss_pred eeEEEECCCCCC
Confidence 567999999996
No 85
>PLN02533 probable purple acid phosphatase
Probab=88.06 E-value=0.86 Score=47.62 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=44.2
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
..+|+++||++...- .. ..++.+... .|..++++||++... .+...++++.+++.. +....
T Consensus 139 ~~~f~v~GDlG~~~~--~~---~tl~~i~~~--~pD~vl~~GDl~y~~---------~~~~~wd~f~~~i~~---l~s~~ 199 (427)
T PLN02533 139 PIKFAVSGDLGTSEW--TK---STLEHVSKW--DYDVFILPGDLSYAN---------FYQPLWDTFGRLVQP---LASQR 199 (427)
T ss_pred CeEEEEEEeCCCCcc--cH---HHHHHHHhc--CCCEEEEcCcccccc---------chHHHHHHHHHHhhh---HhhcC
Confidence 467999999864321 11 122222222 588999999986421 123344555555542 34567
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
++..+|||||-.
T Consensus 200 P~m~~~GNHE~~ 211 (427)
T PLN02533 200 PWMVTHGNHELE 211 (427)
T ss_pred ceEEeCcccccc
Confidence 999999999975
No 86
>PRK05907 hypothetical protein; Provisional
Probab=87.91 E-value=0.47 Score=47.49 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccC---CCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESS---LKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~---~~~~~vd~~~~~~~~~~ 72 (418)
++.++|.+.|+.+|++|.++|+++|.+..+. . -+..+..++.|- . .....||.+.|++++..
T Consensus 138 ~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~---~---nL~~l~~EleKL-~ly~g~~~~It~e~V~~lv~~ 202 (311)
T PRK05907 138 RIAQLLIQRAKELGISCSLGLASLFVSKFPQ---T---GLFEILSEFQKL-LCQMGKKESLEASDIQSFVVK 202 (311)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHccC---C---CHHHHHHHHHHH-HHhcCCCCeECHHHHHHHhcC
Confidence 7899999999999999999999999986631 1 144555555553 2 23567999999887653
No 87
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=87.80 E-value=3.2 Score=33.43 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEEEEEEEEccC-C---cEEEeeCCcEEEEEeccccc-----cceeeccCcEEEEEEEEee-CCeEEE
Q 014802 180 RWVMGVISQLED-G---HFYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEGEMLV-DGIFQV 237 (418)
Q Consensus 180 ~~vlGml~~~~~-g---~~~LED~tG~I~Ldls~~~~-----~~g~~~~g~vV~veG~~~~-~G~F~V 237 (418)
+.++|++...++ + .|.|+|.||+|+...=.... ....+.+|.+|-|.|.... +|..++
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~g~~ql 69 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQGKKSI 69 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccCCeeEE
Confidence 458999998654 3 36699999999986543221 2446789999999999852 455444
No 88
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=87.68 E-value=1.9 Score=41.52 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=39.5
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccC----C-C--CCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCC
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFES----V-E--VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~----~-~--~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~ 357 (418)
++.++|||| +.-.. |.++++.+.- . . .....+|+.||++++- .++. +.++.+.++.
T Consensus 2 ~~~vIGDIH-G~~~~---L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRG----p~S~----~vl~~~~~~~----- 64 (245)
T PRK13625 2 KYDIIGDIH-GCYQE---FQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRG----PHSL----RMIEIVWELV----- 64 (245)
T ss_pred ceEEEEECc-cCHHH---HHHHHHHcCCCcccCcccCCCCCEEEEECcccCCC----cChH----HHHHHHHHHh-----
Confidence 367899999 54444 4444444211 0 0 0125899999999962 1121 2223233332
Q ss_pred ccccceEEEecCCCCC
Q 014802 358 LKEHSRFLFIPGPDDA 373 (418)
Q Consensus 358 l~~~~~~v~vPG~~Dp 373 (418)
....++++-||||-
T Consensus 65 --~~~~~~~l~GNHE~ 78 (245)
T PRK13625 65 --EKKAAYYVPGNHCN 78 (245)
T ss_pred --hCCCEEEEeCccHH
Confidence 12478999999984
No 89
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=86.92 E-value=2.4 Score=41.50 Aligned_cols=59 Identities=15% Similarity=0.344 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHH--HHHHHHHHHhc-CCCccccceEEEecCCCCCCCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRL--QFGKLGQMIAA-HPRLKEHSRFLFIPGPDDAGPSTVLPR 381 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~--~f~~La~~l~~-~p~l~~~~~~v~vPG~~Dp~~~~~lPq 381 (418)
.|..+|+.||.+...... ....... ....+.+.+.+ +| .++++.++||||.......+.
T Consensus 68 ~~dfii~tGD~v~h~~~~---~~~~~~~~~~~~~~~~~l~~~~~----~~pv~~~~GNHD~~p~~~~~~ 129 (296)
T cd00842 68 KPDFILWTGDLVRHDVDE---QTPETLVLISISNLTSLLKKAFP----DTPVYPALGNHDSYPVNQFPP 129 (296)
T ss_pred CCCEEEEcCCCCCCCchh---hchhHHHHHHHHHHHHHHHHhCC----CCCEEEcCCCCCCCcccccCC
Confidence 588999999998764321 1111111 12223333332 34 468999999999876454443
No 90
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=86.73 E-value=1.4 Score=44.19 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~ 72 (418)
.+.++|.+.++.+|++|.++|+++|++.++.. +..+-.|+.|- .+=...|+.+.|++++..
T Consensus 139 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d-------l~~l~~ELeKL-~ly~~~It~edV~~~v~~ 199 (328)
T PRK08487 139 EALELLQERAKELGLDIDQNALNHLYFIHNED-------LALAANELEKL-AILNEPITLKDIQELVFG 199 (328)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcH-------HHHHHHHHHHH-HHhcCCCCHHHHHHHhcc
Confidence 57889999999999999999999999977742 33444444443 221226899999887653
No 91
>PRK07914 hypothetical protein; Reviewed
Probab=86.71 E-value=1.9 Score=43.06 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCC-CcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSL-KSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~-~~~~vd~~~~~~~~~ 71 (418)
.+.++|.+.++.+|++|.++|+++|.+.++.. +..+-.++.|. .. .+..||.+.|++++.
T Consensus 132 ~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~d-------l~~l~~EleKL-~~~~~~~It~e~V~~~v~ 192 (320)
T PRK07914 132 ERADFVRKEFRSLRVKVDDDTVTALLDAVGSD-------LRELASACSQL-VADTGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHCcc-------HHHHHHHHHHH-hcCCCCCcCHHHHHHHcC
Confidence 56889999999999999999999999988743 22222333332 21 234589988888765
No 92
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=86.63 E-value=2.6 Score=36.59 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=50.2
Q ss_pred cceecccccC-CCCc-EEEEEEEEEc-cCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe
Q 014802 166 EISTIQSLVG-QTGR-RWVMGVISQL-EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 166 ~it~I~~Llg-~~g~-~~vlGml~~~-~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~ 230 (418)
..++++.++. +++. +.+=|-|.+. .+.+|...|.||+|.++|.+.....--+.++.-|-+.|++.
T Consensus 44 ~~~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p~d~V~I~GeVD 111 (126)
T TIGR00156 44 KKMTVDFAKSMHDGASVTLRGNIISHIGDDRYVFRDKSGEINVVIPAAVWNGREVQPKDMVNISGSLD 111 (126)
T ss_pred ceEeHHHHhhCCCCCEEEEEEEEEEEeCCceEEEECCCCCEEEEECHHHcCCCcCCCCCEEEEEEEEC
Confidence 4677777764 3444 4588988885 55679999999999999987665333668999999999984
No 93
>PRK05629 hypothetical protein; Validated
Probab=85.94 E-value=2.3 Score=42.40 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
++.++|.+.|+.+|++|.++|+++|.+.++..-..-...+++|+- . . +.-||.+.|++++.
T Consensus 130 ~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~----~-~--~~~It~e~V~~~v~ 190 (318)
T PRK05629 130 ERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVE----D-T--QGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHh----c-C--CCCcCHHHHHHHhC
Confidence 678899999999999999999999999877531111123444431 1 1 23589998888754
No 94
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=85.00 E-value=9.8 Score=44.51 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=48.6
Q ss_pred eecccccCCCCc-EEEEEEEEEc-----cCCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEe-eCC-
Q 014802 168 STIQSLVGQTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEML-VDG- 233 (418)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~-~~G- 233 (418)
+++..|....|. +.|.||++.. ..|+ +.|||.||.+++.+-...+. ...+.+|.+|+|+|+.. .+|
T Consensus 933 ~~~~~l~~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~~~ 1012 (1107)
T PRK06920 933 PSLAQAMRHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGAIVLVDGTIELRNHK 1012 (1107)
T ss_pred cCHHHHhhcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCc
Confidence 455555322344 5699999874 3453 45899999999976543322 35678999999999986 333
Q ss_pred -eEEEEEe
Q 014802 234 -IFQVITC 240 (418)
Q Consensus 234 -~F~V~~i 240 (418)
.+.|.+|
T Consensus 1013 ~~~~~~~i 1020 (1107)
T PRK06920 1013 LQWIVNGL 1020 (1107)
T ss_pred EEEEEeec
Confidence 3555555
No 95
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=84.73 E-value=1.8 Score=39.63 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=39.2
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|.++||.|.+...... ..+.+.. ..+.++|.+||+++... ... |..- + ..++
T Consensus 3 ~ilviSDtH~~~~~~~~-~~~~~~~-----~~~d~vih~GD~~~~~~------~~~-------l~~~------~--~~~i 55 (172)
T COG0622 3 KILVISDTHGPLRAIEK-ALKIFNL-----EKVDAVIHAGDSTSPFT------LDA-------LEGG------L--AAKL 55 (172)
T ss_pred EEEEEeccCCChhhhhH-HHHHhhh-----cCCCEEEECCCcCCccc------hHH-------hhcc------c--ccce
Confidence 57889999998874322 2222221 14789999999986421 111 1110 1 2588
Q ss_pred EEecCCCCCCC
Q 014802 365 LFIPGPDDAGP 375 (418)
Q Consensus 365 v~vPG~~Dp~~ 375 (418)
+.|=||+|-..
T Consensus 56 ~~V~GN~D~~~ 66 (172)
T COG0622 56 IAVRGNCDGEV 66 (172)
T ss_pred EEEEccCCCcc
Confidence 89999999643
No 96
>PRK10053 hypothetical protein; Provisional
Probab=84.46 E-value=3.8 Score=35.79 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=50.2
Q ss_pred cceecccccC-CCCc-EEEEEEEEEc-cCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe
Q 014802 166 EISTIQSLVG-QTGR-RWVMGVISQL-EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 166 ~it~I~~Llg-~~g~-~~vlGml~~~-~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~ 230 (418)
.+++++..+. +++. +.+=|-|.+. .+.+|...|.||.|.++|.+.....--++++.-|-+.|++.
T Consensus 48 ~~~tV~~a~~~~Dd~~V~L~G~Iv~~lg~d~Y~F~D~tG~I~VeID~~~w~G~~v~p~~kV~I~GevD 115 (130)
T PRK10053 48 RKMTVEQAKTMHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPAAVFDGREVQPDQMININGSLD 115 (130)
T ss_pred ceEEHHHhhcCcCCCeEEEEEEEEEEeCCceEEEECCCCcEEEEeCHHHcCCCcCCCCCEEEEEEEEC
Confidence 3567777653 4454 4578988875 66779999999999999998765333678999999999984
No 97
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=84.26 E-value=5 Score=34.56 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=49.2
Q ss_pred cceecccccC-CCCc-EEEEEEEEE-ccCCcEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe
Q 014802 166 EISTIQSLVG-QTGR-RWVMGVISQ-LEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 166 ~it~I~~Llg-~~g~-~~vlGml~~-~~~g~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~ 230 (418)
+.++++.-+. +.+. +.+-|-|.+ ..++.|..-|-||.|.+++....+..--.++.+-|-++|++.
T Consensus 44 ~~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D~y~FrD~sGeI~VeIdd~~w~g~tv~P~dkV~I~GevD 111 (128)
T COG3111 44 KVTTVDQAKTLHDDAWVSLEGNIVRQIGDDRYVFRDASGEINVDIDDKVWNGQTVTPKDKVRIQGEVD 111 (128)
T ss_pred ceeEHHHhhccccCCeEEEEeeEEEeeCCceEEEEcCCccEEEEecccccCCcccCcccEEEEEeEEc
Confidence 4555554433 3344 457898877 477889999999999999998766545778999999999983
No 98
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=84.13 E-value=1.9 Score=37.07 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=20.1
Q ss_pred EEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCC
Q 014802 288 ILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNF 326 (418)
Q Consensus 288 ~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf 326 (418)
++||.| +. .+.+.++... ...+..+|++||+
T Consensus 2 viSDtH-~~---~~~~~~~~~~----~~~~d~ii~~GD~ 32 (129)
T cd07403 2 VISDTE-SP---ALYSPEIKVR----LEGVDLILSAGDL 32 (129)
T ss_pred eecccc-Cc---cccchHHHhh----CCCCCEEEECCCC
Confidence 789999 44 2344433332 1257899999997
No 99
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=84.07 E-value=2.2 Score=42.49 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccC---CCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESS---LKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~---~~~~~vd~~~~~~~~~ 71 (418)
++.+.|.+.|+.+|++|.++|+++|++.++.. +..+..++.|... .++..|+.+.|++++.
T Consensus 134 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d-------l~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 134 GLKQLVERTAQELGVKLTPEAAELLAEAVGND-------SRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcc-------HHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 47889999999999999999999999988753 2233333333311 1244688888888764
No 100
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=83.98 E-value=2 Score=42.76 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhcc--CCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~--~~~~~~vd~~~~~~~~~~ 72 (418)
+..+.|.+.|+..|++|.++|+++|++.++.. +..+..++.|.. ...+. |+.+.|++++..
T Consensus 150 ~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d-------~~~l~~El~KL~l~~~~~~-It~~~I~~~i~~ 212 (340)
T PRK05574 150 ELPQWIQQRLKQQGLQIDAAALQLLAERVEGN-------LLALAQELEKLALLYPDGK-ITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCch-------HHHHHHHHHHHHhhcCCCC-CCHHHHHHHHhh
Confidence 56778999999999999999999999977742 333444444431 11233 899999888764
No 101
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=83.78 E-value=5 Score=39.33 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=44.6
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| ++- +.|..+|..+.. .....+|++||+++.-- .+. +.+..|-.+...+| .
T Consensus 27 ~~~i~vvGDiH-G~~---~~l~~ll~~~~~--~~~~~~vfLGD~VDrG~----~s~----e~l~~l~~lk~~~p-----~ 87 (271)
T smart00156 27 SAPVTVCGDIH-GQF---DDLLRLFDLNGP--PPDTNYVFLGDYVDRGP----FSI----EVILLLFALKILYP-----N 87 (271)
T ss_pred CCCEEEEEeCc-CCH---HHHHHHHHHcCC--CCCceEEEeCCccCCCC----ChH----HHHHHHHHHHhcCC-----C
Confidence 35788999998 333 444555554332 13468999999998521 111 23333333333455 3
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||..
T Consensus 88 ~v~llrGNHE~~ 99 (271)
T smart00156 88 RVVLLRGNHESR 99 (271)
T ss_pred CEEEEeccccHH
Confidence 789999999983
No 102
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=83.76 E-value=4.9 Score=30.63 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=32.7
Q ss_pred EEEeeCCcEEEEEeccccc--cceeeccCcEEEEEEEEee-CC--eEEEEEe
Q 014802 194 FYLEDLAASVEIDLSKAKI--TTGFFTENTIVVAEGEMLV-DG--IFQVITC 240 (418)
Q Consensus 194 ~~LED~tG~I~Ldls~~~~--~~g~~~~g~vV~veG~~~~-~G--~F~V~~i 240 (418)
+.|+|.+|.+.+.+=+..+ ....+.+|.+|.+.|.... +| .+.+.++
T Consensus 23 ~~l~D~tg~~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i 74 (84)
T cd04485 23 VTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEGKVERRDGGLRLIAERI 74 (84)
T ss_pred EEEEeCCCeEEEEECHHHHHHHHHHhcCCCEEEEEEEEEecCCceEEEeecc
Confidence 4589999999987654332 2346789999999999864 33 3445444
No 103
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=83.26 E-value=3.4 Score=40.71 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=26.5
Q ss_pred EEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCC
Q 014802 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSH 329 (418)
Q Consensus 286 ~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~ 329 (418)
+.++||||= .+++|..+|+...-. .....+|++||+++.
T Consensus 3 ~YvIGDIHG----c~daL~~LL~~i~f~-~~~D~l~~lGDlVdR 41 (279)
T TIGR00668 3 TYLIGDLHG----CYDELQALLERVEFD-PGQDTLWLTGDLVAR 41 (279)
T ss_pred EEEEEcccC----CHHHHHHHHHHhCcC-CCCCEEEEeCCccCC
Confidence 467899983 356666677665311 123589999999985
No 104
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=83.17 E-value=5.3 Score=39.89 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=46.1
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| |+- +.|..+|..... .+...+|++||+++.-- .+. +.+..|..+...+|+
T Consensus 42 ~~~i~ViGDIH-G~~---~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~----~s~----Evi~lL~~lki~~p~----- 102 (305)
T cd07416 42 EAPVTVCGDIH-GQF---YDLLKLFEVGGS--PANTRYLFLGDYVDRGY----FSI----ECVLYLWALKILYPK----- 102 (305)
T ss_pred CCCEEEEEeCC-CCH---HHHHHHHHhcCC--CCCceEEEECCccCCCC----ChH----HHHHHHHHHHhhcCC-----
Confidence 46788999998 443 334555553321 12368999999998621 122 334444444445664
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||..
T Consensus 103 ~v~lLRGNHE~~ 114 (305)
T cd07416 103 TLFLLRGNHECR 114 (305)
T ss_pred CEEEEeCCCcHH
Confidence 899999999973
No 105
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=82.41 E-value=3.5 Score=30.79 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=36.4
Q ss_pred EEEeeCCcEEEEEecc-ccccceeeccCcEEEEEEEEeeCCeEEEEEecCCCCC
Q 014802 194 FYLEDLAASVEIDLSK-AKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLE 246 (418)
Q Consensus 194 ~~LED~tG~I~Ldls~-~~~~~g~~~~g~vV~veG~~~~~G~F~V~~i~~Pp~e 246 (418)
+.+.|.+|.|.+.+=+ .......|..|..+.+.|++...+ --..|.||..+
T Consensus 22 ~~~~D~~g~i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~~--~~~qi~~P~~~ 73 (75)
T cd04488 22 VTLSDGTGTLTLVFFNFQPYLKKQLPPGTRVRVSGKVKRFR--GGLQIVHPEYE 73 (75)
T ss_pred EEEEcCCCEEEEEEECCCHHHHhcCCCCCEEEEEEEEeecC--CeeEEeCCcEE
Confidence 4589999999987654 223356788999999999985321 13468888763
No 106
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=81.96 E-value=2.8 Score=39.92 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=30.2
Q ss_pred cEEEEEccccCcH------HHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCC
Q 014802 285 MFVILSDIWLDNE------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPC 331 (418)
Q Consensus 285 ~~v~lSDv~ld~~------~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~ 331 (418)
.|+.+||+| +.- .-+..+..++...... .+...+|..||++++..
T Consensus 2 ~i~~~sD~h-g~~~~~~~~~g~~~l~~~v~~~~~~-~~~~l~v~~GD~~~~~~ 52 (252)
T cd00845 2 TILHTNDLH-GHFEPAGGVGGAARLATLIKEERAE-NENTLLLDAGDNFDGSP 52 (252)
T ss_pred EEEEecccc-cCccccCCcCCHHHHHHHHHHHHhc-CCCeEEEeCCccCCCcc
Confidence 477899999 433 3456677777766543 24457788999987643
No 107
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=81.64 E-value=17 Score=42.84 Aligned_cols=123 Identities=21% Similarity=0.335 Sum_probs=71.8
Q ss_pred eecccccC-CCCc-EEEEEEEEEc-----cCCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEeeC-C
Q 014802 168 STIQSLVG-QTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G 233 (418)
Q Consensus 168 t~I~~Llg-~~g~-~~vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~~~-G 233 (418)
+++..|.. ..|+ +.+.|||+.. ..|+ +.|||.||.+++.+-...+. ...+.+|.+|+|+|+.... |
T Consensus 966 ~~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~ye~~~~~L~~g~iV~V~GkVe~~~~ 1045 (1135)
T PRK05673 966 TRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDDG 1045 (1135)
T ss_pred cCHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 34555432 2344 4589999874 3464 45899999999976543222 3567899999999998632 4
Q ss_pred --eEEEEEecCCCCCCchhhhhhccCcccCCCCCCchhhhHHHHHHHHhcCCCcEEE-EEccccCcHHHHHHHHHHHhcc
Q 014802 234 --IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVI-LSDIWLDNEEVMGKLEVVLDGF 310 (418)
Q Consensus 234 --~F~V~~i~~Pp~e~r~~s~~~~~~ld~~G~~~~~~~~~~~l~~~e~~~~~~~~v~-lSDv~ld~~~~l~~L~~l~~~~ 310 (418)
.+.|.+|. | . ...... ....+.+ +.+-+ .++..+++|+.++..+
T Consensus 1046 ~~qlii~~I~-~-L-----------------------------~~~~~~-~~~~l~i~~~~~~-~~~~~~~~l~~~l~~~ 1092 (1135)
T PRK05673 1046 GLRLTAREVM-D-L-----------------------------EEARAK-YARPLRISLPDRQ-LTPQLLERLKQVLEPH 1092 (1135)
T ss_pred eEEEEEeecc-c-H-----------------------------HHHhhc-cCceEEEEecccc-cCHHHHHHHHHHHHhC
Confidence 35555442 0 0 000111 1112333 32211 2456688999999988
Q ss_pred cCCCCCCeEEEEEcC
Q 014802 311 ESVEVVPSLFVFMGN 325 (418)
Q Consensus 311 ~~~~~~p~~~Vl~Gn 325 (418)
.+. .|+.+.+-.+
T Consensus 1093 ~G~--~~v~~~~~~~ 1105 (1135)
T PRK05673 1093 RGT--SPVHLYLQDP 1105 (1135)
T ss_pred CCC--ceEEEEEecC
Confidence 653 5777666543
No 108
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=81.60 E-value=5.5 Score=39.91 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhcc--CCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~--~~~~~~vd~~~~~~~~~~ 72 (418)
.+.++|.+.|+.+|++|.++|+++|++.++.. +..+..++.|.- ......|+.+.|++++..
T Consensus 146 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d-------l~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 146 DLARLIDDELAEAGLRITPDARALLVALLGGD-------RLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 56788999999999999999999999977743 223333333320 112346899888887653
No 109
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=81.56 E-value=6 Score=39.59 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=42.5
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCC------CCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCC
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESV------EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~------~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~ 357 (418)
..+.++||+| |+ ++.|..+|+.+.-. +.....+|++||+++.- ..+. +.+.-|..+...+|
T Consensus 48 ~~~~viGDIH-G~---~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRG----p~s~----evl~ll~~lk~~~p- 114 (311)
T cd07419 48 APIKIFGDIH-GQ---FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRG----SNSL----ETICLLLALKVKYP- 114 (311)
T ss_pred CCEEEEEecc-CC---HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCC----CChH----HHHHHHHHhhhcCC-
Confidence 4577889998 33 34455555544210 00124689999999862 1121 33333433333455
Q ss_pred ccccceEEEecCCCCC
Q 014802 358 LKEHSRFLFIPGPDDA 373 (418)
Q Consensus 358 l~~~~~~v~vPG~~Dp 373 (418)
-+++++-||||.
T Consensus 115 ----~~v~lLRGNHE~ 126 (311)
T cd07419 115 ----NQIHLIRGNHED 126 (311)
T ss_pred ----CcEEEeccccch
Confidence 389999999996
No 110
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=81.24 E-value=6.5 Score=39.59 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=41.7
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
.++++||+| |+- ..|..+|....- ......+|++||++++-- .+. |.+.-|..+-..+|+ ++
T Consensus 52 ~~~vvGDiH-G~~---~dL~~il~~~g~-~~~~~~~lFLGDyVDRG~----~s~----Evl~ll~~lk~~~p~-----~v 113 (321)
T cd07420 52 QVTICGDLH-GKL---DDLFLIFYKNGL-PSPENPYVFNGDFVDRGK----RSI----EILIILFAFFLVYPN-----EV 113 (321)
T ss_pred CeEEEEeCC-CCH---HHHHHHHHHcCC-CCccceEEEeccccCCCC----CcH----HHHHHHHHHhhcCCC-----cE
Confidence 688999999 443 334445543321 001247999999999721 122 222223333234564 78
Q ss_pred EEecCCCCC
Q 014802 365 LFIPGPDDA 373 (418)
Q Consensus 365 v~vPG~~Dp 373 (418)
+++-|||+-
T Consensus 114 ~llRGNHE~ 122 (321)
T cd07420 114 HLNRGNHED 122 (321)
T ss_pred EEecCchhh
Confidence 999999986
No 111
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=81.23 E-value=5.3 Score=42.09 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEEEEEEEEc-----cCCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEeeC-C--eEEEEEe
Q 014802 180 RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G--IFQVITC 240 (418)
Q Consensus 180 ~~vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~~~-G--~F~V~~i 240 (418)
+.|.|||+.. ..|+ +.|||.||++++.+-...+. ..++.+|.+|+|+|+.... | .+.|.+|
T Consensus 283 v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~liv~~i 357 (449)
T PRK07373 283 VSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYERISELLQVDARLIIWGKVDRRDDQVQLIVEDA 357 (449)
T ss_pred EEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCeEEEEEeEe
Confidence 4589999984 3454 34899999999976533332 3577899999999998633 4 4666666
No 112
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=81.12 E-value=5.1 Score=39.61 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| |+- +.|..+|..... .+...+|++||+++.- . .+. +.+..|..+...+| .
T Consensus 41 ~~~i~vvGDIH-G~~---~dL~~ll~~~~~--~~~~~~lfLGDyVDRG-~---~s~----evl~ll~~lk~~~p-----~ 101 (285)
T cd07415 41 RSPVTVCGDIH-GQF---YDLLELFRVGGD--PPDTNYLFLGDYVDRG-Y---YSV----ETFLLLLALKVRYP-----D 101 (285)
T ss_pred CCCEEEEEeCC-CCH---HHHHHHHHHcCC--CCCCeEEEEeEECCCC-c---CHH----HHHHHHHHHhhcCC-----C
Confidence 35688899998 333 334445543321 1235899999999862 1 111 33333433333455 4
Q ss_pred eEEEecCCCCC
Q 014802 363 RFLFIPGPDDA 373 (418)
Q Consensus 363 ~~v~vPG~~Dp 373 (418)
.++++-|||+.
T Consensus 102 ~v~llrGNHE~ 112 (285)
T cd07415 102 RITLLRGNHES 112 (285)
T ss_pred cEEEEecccch
Confidence 88999999997
No 113
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=81.10 E-value=5.8 Score=39.37 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| |+- ..|..+|...... +...+|++||+++.- . .+. +.+..|..+-..+|.
T Consensus 49 ~~~i~viGDIH-G~~---~~L~~l~~~~~~~--~~~~~lfLGDyVDRG-~---~s~----e~i~ll~~lk~~~p~----- 109 (293)
T cd07414 49 EAPLKICGDIH-GQY---YDLLRLFEYGGFP--PESNYLFLGDYVDRG-K---QSL----ETICLLLAYKIKYPE----- 109 (293)
T ss_pred CCceEEEEecC-CCH---HHHHHHHHhcCCC--CcceEEEEeeEecCC-C---CcH----HHHHHHHHhhhhCCC-----
Confidence 45688899998 333 3344455443211 235789999999862 1 122 223333333334553
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||..
T Consensus 110 ~i~llrGNHE~~ 121 (293)
T cd07414 110 NFFLLRGNHECA 121 (293)
T ss_pred cEEEEecccchh
Confidence 689999999984
No 114
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=80.23 E-value=9.8 Score=30.97 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=34.8
Q ss_pred EEEEEEEccC----CcEEEeeCCcEEEEEeccccc----------------------cceeeccCcEEEEEEEEe
Q 014802 182 VMGVISQLED----GHFYLEDLAASVEIDLSKAKI----------------------TTGFFTENTIVVAEGEML 230 (418)
Q Consensus 182 vlGml~~~~~----g~~~LED~tG~I~Ldls~~~~----------------------~~g~~~~g~vV~veG~~~ 230 (418)
|+|++....+ -.|.|+|-||.|++.+=.... ....+.+|.+|-|.|...
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~ 76 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIR 76 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEe
Confidence 6888887543 246699999999886542211 123478999999999974
No 115
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=78.12 E-value=4.5 Score=39.39 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~ 72 (418)
...+.|.+.|+..|++|.++|+++|++.++. +...+...++.+.-. ..+. .|+.+.|++++..
T Consensus 115 ~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~-~~~~-~It~e~I~~~~~~ 177 (302)
T TIGR01128 115 ELPRWIQARLKKLGLRIDPDAVQLLAELVEG----NLLAIAQELEKLALY-APDG-KITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhh-CCCC-CCCHHHHHHHHhh
Confidence 5677899999999999999999999986653 222233323322222 1122 5899999888764
No 116
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=75.92 E-value=9.5 Score=38.40 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| |+- +.|..+|...... +...+|++||+++.- . .+. +.+..|..+.-.+| .
T Consensus 58 ~~~i~vvGDIH-G~~---~dL~~l~~~~g~~--~~~~ylfLGDyVDRG-~---~s~----evl~ll~~lki~~p-----~ 118 (320)
T PTZ00480 58 EAPLKICGDVH-GQY---FDLLRLFEYGGYP--PESNYLFLGDYVDRG-K---QSL----ETICLLLAYKIKYP-----E 118 (320)
T ss_pred CCCeEEEeecc-cCH---HHHHHHHHhcCCC--CcceEEEeceecCCC-C---CcH----HHHHHHHHhcccCC-----C
Confidence 45688999998 333 3344455433211 235789999999862 1 121 23333333333445 3
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||..
T Consensus 119 ~v~llRGNHE~~ 130 (320)
T PTZ00480 119 NFFLLRGNHECA 130 (320)
T ss_pred ceEEEecccchh
Confidence 799999999973
No 117
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=74.80 E-value=11 Score=37.66 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=42.9
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+..++++||+| |+- +.|..+|..... .+...+|++||+++.-- .+. +.+..|..+...+| .
T Consensus 42 ~~~i~vvGDIH-G~~---~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~----~s~----evl~ll~~lk~~~p-----~ 102 (303)
T PTZ00239 42 RAPVNVCGDIH-GQF---YDLQALFKEGGD--IPNANYIFIGDFVDRGY----NSV----ETMEYLLCLKVKYP-----G 102 (303)
T ss_pred CCCEEEEEeCC-CCH---HHHHHHHHhcCC--CCCceEEEeeeEcCCCC----CHH----HHHHHHHHhhhcCC-----C
Confidence 35588899998 333 344445554321 12358999999998621 111 22333333333445 3
Q ss_pred eEEEecCCCCC
Q 014802 363 RFLFIPGPDDA 373 (418)
Q Consensus 363 ~~v~vPG~~Dp 373 (418)
.++++-||||.
T Consensus 103 ~v~llrGNHE~ 113 (303)
T PTZ00239 103 NITLLRGNHES 113 (303)
T ss_pred cEEEEecccch
Confidence 88999999997
No 118
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=74.36 E-value=22 Score=30.74 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=42.8
Q ss_pred cceecccccCCCCcEEEEEEEEEc--------cCC--c---EEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe--
Q 014802 166 EISTIQSLVGQTGRRWVMGVISQL--------EDG--H---FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML-- 230 (418)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~--------~~g--~---~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~-- 230 (418)
.+++|+.|--....+-++|.+... ..| . +.|.|.||+|.+.+=... ...+.+|++|.++|.+.
T Consensus 3 ~~~kI~dL~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~--a~~l~~GdvV~I~na~v~~ 80 (129)
T PRK06461 3 MITKIKDLKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ--AGSLKEGEVVEIENAWTTL 80 (129)
T ss_pred CceEHHHcCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc--cccCCCCCEEEEECcEEee
Confidence 367777774211224466666632 122 2 358999999999765432 34578999999995542
Q ss_pred eCCeEEE
Q 014802 231 VDGIFQV 237 (418)
Q Consensus 231 ~~G~F~V 237 (418)
-.|.+.+
T Consensus 81 f~G~lqL 87 (129)
T PRK06461 81 YRGKVQL 87 (129)
T ss_pred eCCEEEE
Confidence 2465443
No 119
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=74.29 E-value=11 Score=35.99 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=47.4
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
.-+-+.+|+| ++- -.|.++|..= .+.|-.-.|+||||++.-. ++ -|.|.-|--+.++||. +
T Consensus 46 tPVTvCGDIH-GQF---yDL~eLFrtg--G~vP~tnYiFmGDfVDRGy-yS-------LEtfT~l~~LkaryP~-----~ 106 (306)
T KOG0373|consen 46 TPVTVCGDIH-GQF---YDLLELFRTG--GQVPDTNYIFMGDFVDRGY-YS-------LETFTLLLLLKARYPA-----K 106 (306)
T ss_pred CCeeEeeccc-hhH---HHHHHHHHhc--CCCCCcceEEecccccccc-cc-------HHHHHHHHHHhhcCCc-----e
Confidence 4577889998 332 2334455431 2334578999999998743 11 2456667677788995 8
Q ss_pred EEEecCCCCC
Q 014802 364 FLFIPGPDDA 373 (418)
Q Consensus 364 ~v~vPG~~Dp 373 (418)
+-++-|||.-
T Consensus 107 ITLlRGNHEs 116 (306)
T KOG0373|consen 107 ITLLRGNHES 116 (306)
T ss_pred eEEeeccchh
Confidence 9999999985
No 120
>PRK09087 hypothetical protein; Validated
Probab=73.68 E-value=11 Score=35.83 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 5 TRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 5 ~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
.++-+.++|+.+|+.|.+|++++|++.+... -..+..+++.+.+.......-||...++++++.+
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~----~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMERS----LFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 3444555668899999999999999866532 2344545555554311234568999999988764
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=72.81 E-value=12 Score=35.70 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=40.6
Q ss_pred hHHHHHHHHH-HHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCC-CcccccHHHHHHHH
Q 014802 3 GQTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSL-KSSIIDKESVNRVT 70 (418)
Q Consensus 3 ~~~~~~I~~~-Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~-~~~~vd~~~~~~~~ 70 (418)
+..+.+|+++ ++.+|+.+.+|+++||++..... -..+..+++.+.+. .+ ...-||.+.+++++
T Consensus 169 ~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d----~r~l~~~l~~l~~~-~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 169 DEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE----MRTLFMTLDQLDRA-SITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC----HHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHH
Confidence 4455555555 88899999999999999855532 34445555544432 21 13448888887765
No 122
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=72.72 E-value=13 Score=38.25 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=41.6
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCC-eEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVP-SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p-~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
..++++||+| ++-.. |..+|....-. .+ ..+|+.||+++.- . .+. +.+..|-.+-..+| .
T Consensus 66 ~~i~VvGDIH-G~~~d---L~~ll~~~g~~--~~~~~ylFLGDyVDRG-p---~Sl----Evl~lL~~lki~~p-----~ 126 (377)
T cd07418 66 CEVVVVGDVH-GQLHD---VLFLLEDAGFP--DQNRFYVFNGDYVDRG-A---WGL----ETFLLLLSWKVLLP-----D 126 (377)
T ss_pred CCEEEEEecC-CCHHH---HHHHHHHhCCC--CCCceEEEeccccCCC-C---ChH----HHHHHHHHHhhccC-----C
Confidence 5689999999 44433 33445432210 12 3689999999852 1 122 22222322323355 3
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||.-
T Consensus 127 ~v~lLRGNHE~~ 138 (377)
T cd07418 127 RVYLLRGNHESK 138 (377)
T ss_pred eEEEEeeecccc
Confidence 889999999973
No 123
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=72.44 E-value=7.6 Score=29.80 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=33.0
Q ss_pred EEEeeCCcEEEEEeccccc-cceeeccCcEEEEEEEEee-CCe--EEEEEe
Q 014802 194 FYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGEMLV-DGI--FQVITC 240 (418)
Q Consensus 194 ~~LED~tG~I~Ldls~~~~-~~g~~~~g~vV~veG~~~~-~G~--F~V~~i 240 (418)
+.|+|.+|.|++.+=+..+ ....+.+|.+|.+.|.... +|. +.+.+|
T Consensus 23 ~~l~D~tg~i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i 73 (83)
T cd04492 23 LTLQDKTGEIEAKLWDASEEDEEKFKPGDIVHVKGRVEEYRGRLQLKIQRI 73 (83)
T ss_pred EEEEcCCCeEEEEEcCCChhhHhhCCCCCEEEEEEEEEEeCCceeEEEEEE
Confidence 5689999999997654222 2457889999999999863 442 444444
No 124
>PRK06620 hypothetical protein; Validated
Probab=71.35 E-value=11 Score=35.59 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=39.7
Q ss_pred hHHHHHH-HHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHH
Q 014802 3 GQTRKKI-QKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (418)
Q Consensus 3 ~~~~~~I-~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~ 70 (418)
+..+..| .+.++.+|+.|..+++++|++.+.. +-..+..+++.+...+.....-||.+.+++++
T Consensus 149 ~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 149 DELIKILIFKHFSISSVTISRQIIDFLLVNLPR----EYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 3344444 4667889999999999999986553 23344444444443211223457887777764
No 125
>PRK06893 DNA replication initiation factor; Validated
Probab=70.21 E-value=15 Score=34.83 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=40.6
Q ss_pred ChHHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCC-cccccHHHHHHHH
Q 014802 2 SGQTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLK-SSIIDKESVNRVT 70 (418)
Q Consensus 2 ~~~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~-~~~vd~~~~~~~~ 70 (418)
++..+.+|++ .+..+|+.+..|++.||++.... +-..+..+++.+.+. .+. ..-||.+.+++++
T Consensus 162 d~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~~~-~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR----DMHTLFDALDLLDKA-SLQAQRKLTIPFVKEIL 227 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHh
Confidence 4556666655 45779999999999999985543 233444444444432 221 3458888887765
No 126
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=69.50 E-value=18 Score=36.28 Aligned_cols=63 Identities=22% Similarity=0.150 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~ 72 (418)
++.+.|.+.|+.+|+.+.++|+++|++.++..-..-...+++|. =. .... .|+.+.|+.++..
T Consensus 144 ~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~----l~-~~~~-~I~~~~V~~~v~~ 206 (334)
T COG1466 144 ELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLA----LY-AGDK-EITLEDVEEVVSD 206 (334)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHH----Hh-CCCC-cCCHHHHHHHHhc
Confidence 57889999999999999999999999988743111112333332 12 1234 8999999887754
No 127
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=69.06 E-value=31 Score=28.32 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=47.9
Q ss_pred cccccCCC---CcEEEEEEEEEc---cCCcEE--EeeCCcEEEEEecccccc--c-eeeccCcEEEEEEEEe---eCCe-
Q 014802 170 IQSLVGQT---GRRWVMGVISQL---EDGHFY--LEDLAASVEIDLSKAKIT--T-GFFTENTIVVAEGEML---VDGI- 234 (418)
Q Consensus 170 I~~Llg~~---g~~~vlGml~~~---~~g~~~--LED~tG~I~Ldls~~~~~--~-g~~~~g~vV~veG~~~---~~G~- 234 (418)
|+.++.++ +..+|-|=|+.. ..|++| |-|...+|.+.+=..... . ..+.+|+-|+|.|... ..|.
T Consensus 11 ik~~le~~~~~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~ 90 (99)
T PF13742_consen 11 IKDLLERDPPLPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSL 90 (99)
T ss_pred HHHHHhcCCCcCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEE
Confidence 44555443 557899999984 457766 788888888876533221 2 3578999999999953 5675
Q ss_pred -EEEEEe
Q 014802 235 -FQVITC 240 (418)
Q Consensus 235 -F~V~~i 240 (418)
|.|.+|
T Consensus 91 sl~v~~i 97 (99)
T PF13742_consen 91 SLIVEDI 97 (99)
T ss_pred EEEEEEe
Confidence 455554
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=68.67 E-value=16 Score=34.82 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=42.7
Q ss_pred hHHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCC-cccccHHHHHHHHH
Q 014802 3 GQTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLK-SSIIDKESVNRVTS 71 (418)
Q Consensus 3 ~~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~-~~~vd~~~~~~~~~ 71 (418)
+..+..|++ +++.+|+.+.++++++|++.... +-..++.+++.+.+. .+. ..-||..-+++++.
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~-~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTRGTR----SMSALFDLLERLDQA-SLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHH-HHHcCCcCCHHHHHHHhc
Confidence 345556666 88889999999999999985543 334556666666543 322 34578777777653
No 129
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=68.65 E-value=11 Score=30.51 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=35.8
Q ss_pred EEEEEEEEc----cCCcEEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEE
Q 014802 181 WVMGVISQL----EDGHFYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGE 228 (418)
Q Consensus 181 ~vlGml~~~----~~g~~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~ 228 (418)
.+.|||... .+....|.|+||+|.-.+++.... ...+.+|++++.+-.
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~i~~tiH~~v~~~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGEIRGTIHRKVLEEYGDELSPGAVLLLKDV 59 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCcEEEEEeHHHHhhcCCccccCEEEEEeee
Confidence 467777663 344577999999999998865443 367789999888765
No 130
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=67.36 E-value=33 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.4
Q ss_pred cEEEeeCC-cEEEEEecccccc--ceeeccCcEEEEEEEEe
Q 014802 193 HFYLEDLA-ASVEIDLSKAKIT--TGFFTENTIVVAEGEML 230 (418)
Q Consensus 193 ~~~LED~t-G~I~Ldls~~~~~--~g~~~~g~vV~veG~~~ 230 (418)
.+.|+|.+ |.+++.+-..... ...+.+|.+|.++|...
T Consensus 20 ~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~ 60 (75)
T cd03524 20 IFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIKGKVK 60 (75)
T ss_pred EEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEEEEEE
Confidence 35689999 9999976543222 24678999999999985
No 131
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=67.10 E-value=11 Score=36.41 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEcCCCCCC
Q 014802 300 MGKLEVVLDGFESVEVVPSLFVFMGNFCSHP 330 (418)
Q Consensus 300 l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~ 330 (418)
+..+..+++...+. .+...++.+||++++.
T Consensus 23 ~~rl~~~i~~~r~~-~~~~l~l~~GD~~~g~ 52 (257)
T cd07406 23 AARFATLRKQLRKE-NPNTLVLFSGDVLSPS 52 (257)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEECCCccCCc
Confidence 45566666665543 2556899999998764
No 132
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=65.87 E-value=22 Score=35.70 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=40.8
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCC--eEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVP--SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p--~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~ 361 (418)
..++++||+| |+- +.|.++|....- +| ..+|++||+++.- . .+. +.+..|-.+.-.+|
T Consensus 60 ~~~~VvGDIH-G~~---~dL~~ll~~~g~---~~~~~~ylFLGDyVDRG-~---~S~----Evl~ll~~lki~~p----- 119 (316)
T cd07417 60 EKITVCGDTH-GQF---YDLLNIFELNGL---PSETNPYLFNGDFVDRG-S---FSV----EVILTLFAFKLLYP----- 119 (316)
T ss_pred ceeEEeeccc-CCH---HHHHHHHHhcCC---CCccCeEEEEeeEecCC-C---ChH----HHHHHHHHhhhccC-----
Confidence 4588899998 333 344445543221 22 3799999999862 1 122 22332333322345
Q ss_pred ceEEEecCCCCC
Q 014802 362 SRFLFIPGPDDA 373 (418)
Q Consensus 362 ~~~v~vPG~~Dp 373 (418)
-.++++-|||+.
T Consensus 120 ~~v~lLRGNHE~ 131 (316)
T cd07417 120 NHFHLNRGNHET 131 (316)
T ss_pred CceEEEeeccch
Confidence 368899999996
No 133
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=65.24 E-value=62 Score=26.68 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=43.1
Q ss_pred Cc-EEEEEEEEEccCCcEEEeeCCc-EEEEEeccccccceeeccCcEEEEEEEEeeCCeEEEEE
Q 014802 178 GR-RWVMGVISQLEDGHFYLEDLAA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVIT 239 (418)
Q Consensus 178 g~-~~vlGml~~~~~g~~~LED~tG-~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G~F~V~~ 239 (418)
|+ +.++|-+.+...+.+.+.+.+| .|.+.+.... -...+-+|-|.|+...+....+.+
T Consensus 15 gk~V~ivGkV~~~~~~~~~~~~~Dg~~v~v~l~~~~----~~~~~~~vEViG~V~~~~~I~~~~ 74 (101)
T cd04479 15 GKTVRIVGKVEKVDGDSLTLISSDGVNVTVELNRPL----DLPISGYVEVIGKVSPDLTIRVLS 74 (101)
T ss_pred CCEEEEEEEEEEecCCeEEEEcCCCCEEEEEeCCCC----CcccCCEEEEEEEECCCCeEEEEE
Confidence 45 5699999999877899999998 8999876421 233566788999986665555544
No 134
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=61.85 E-value=27 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=26.4
Q ss_pred EEEeeCCcEEEEEeccccccceeeccCcEEEEE-EEE
Q 014802 194 FYLEDLAASVEIDLSKAKITTGFFTENTIVVAE-GEM 229 (418)
Q Consensus 194 ~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~ve-G~~ 229 (418)
+.|.|.||+|++.+=+... ...+.+|.+|.++ |..
T Consensus 27 ~~l~D~TG~i~~~~W~~~~-~~~~~~G~vv~i~~~~v 62 (82)
T cd04491 27 GLVGDETGTIRFTLWDEKA-ADDLEPGDVVRIENAYV 62 (82)
T ss_pred EEEECCCCEEEEEEECchh-cccCCCCCEEEEEeEEE
Confidence 4589999999997765432 4457899999999 554
No 135
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=61.82 E-value=23 Score=41.90 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred eecccccC-CCCc-EEEEEEEEEc-----cCCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEeeC-C
Q 014802 168 STIQSLVG-QTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G 233 (418)
Q Consensus 168 t~I~~Llg-~~g~-~~vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~~~-G 233 (418)
+++..|.. ..|. +.|.|||+.. ..|+ +.|||.+|.+++.+-...+. ..++.+|.+|+|+|+.... |
T Consensus 989 ~~~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~~~ 1068 (1170)
T PRK07374 989 ISLSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRDD 1068 (1170)
T ss_pred cCHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 34555532 2344 5699999874 4464 45899999999976543332 3567899999999998633 4
Q ss_pred --eEEEEEe
Q 014802 234 --IFQVITC 240 (418)
Q Consensus 234 --~F~V~~i 240 (418)
.+.|.++
T Consensus 1069 ~~~~~~~~i 1077 (1170)
T PRK07374 1069 RVQLIIDDC 1077 (1170)
T ss_pred eEEEEEeee
Confidence 4555555
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=61.09 E-value=28 Score=38.23 Aligned_cols=68 Identities=21% Similarity=0.102 Sum_probs=44.5
Q ss_pred hHHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHH
Q 014802 3 GQTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLL 74 (418)
Q Consensus 3 ~~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~ 74 (418)
+.+|..|++ +++.+|+.|..|+++||++.+... -..|+.+|+.|.........-||.+.++.+++.+.
T Consensus 448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn----vR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 448 LETRIAILRKKAVQEQLNAPPEVLEFIASRISRN----IRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 455665554 558899999999999999866543 23344444444332113345588888888887653
No 137
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=59.96 E-value=77 Score=25.58 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=41.1
Q ss_pred EEEEEEEEc----cCCcEE--EeeCCcEEEEEecccc--cc--ceeeccCcEEEEEEEEeeCCeEEEEEec
Q 014802 181 WVMGVISQL----EDGHFY--LEDLAASVEIDLSKAK--IT--TGFFTENTIVVAEGEMLVDGIFQVITCG 241 (418)
Q Consensus 181 ~vlGml~~~----~~g~~~--LED~tG~I~Ldls~~~--~~--~g~~~~g~vV~veG~~~~~G~F~V~~i~ 241 (418)
+|-|-++.. ..|+++ |.|.++.|.+.+=+.. .. .-.+.+|+-|.|.|.......|.|..+-
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGTTLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecCCEEEEEEEE
Confidence 456777753 457755 7999999988553221 11 2245799999999998654467777765
No 138
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=57.76 E-value=19 Score=34.66 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=27.1
Q ss_pred EEEEEccccC------cHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCC
Q 014802 286 FVILSDIWLD------NEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSH 329 (418)
Q Consensus 286 ~v~lSDv~ld------~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~ 329 (418)
++.+||+|-- ..--+.++..+++..... ++..++.+||++++
T Consensus 3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~--~~~l~l~~GD~~~g 50 (257)
T cd07408 3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL--DNDLLVDAGDAIQG 50 (257)
T ss_pred EEEeccCcccccCCCCccccHHHHHHHHHHHHhc--CCEEEEeCCCcCCC
Confidence 5667888731 112245566666665443 57888999999876
No 139
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=57.36 E-value=28 Score=34.54 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=40.9
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCC-eEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVP-SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p-~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
..+.++||+| |+- ..|..+|+...- +| ..+|++||.++.- . .+. +.+..|-.+--.+| .
T Consensus 52 ~p~~ViGDIH-G~~---~~L~~l~~~~~~---~~~~~~lfLGDyVDRG-~---~s~----evl~ll~~lk~~~p-----~ 111 (294)
T PTZ00244 52 PPVRVCGDTH-GQY---YDLLRIFEKCGF---PPYSNYLFLGDYVDRG-K---HSV----ETITLQFCYKIVYP-----E 111 (294)
T ss_pred CCceeeccCC-CCH---HHHHHHHHHcCC---CCcccEEEeeeEecCC-C---CHH----HHHHHHHHHhhccC-----C
Confidence 4578899998 333 445556654321 23 3788999999862 1 121 22222222212244 3
Q ss_pred eEEEecCCCCCC
Q 014802 363 RFLFIPGPDDAG 374 (418)
Q Consensus 363 ~~v~vPG~~Dp~ 374 (418)
.++++-||||..
T Consensus 112 ~v~llrGNHE~~ 123 (294)
T PTZ00244 112 NFFLLRGNHECA 123 (294)
T ss_pred eEEEEecccchH
Confidence 799999999974
No 140
>PRK07217 replication factor A; Reviewed
Probab=56.45 E-value=85 Score=31.48 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=48.1
Q ss_pred cceecccccCCCCcEEEEEEEEEcc---CCc----EEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe--eCCeEE
Q 014802 166 EISTIQSLVGQTGRRWVMGVISQLE---DGH----FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML--VDGIFQ 236 (418)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~~---~g~----~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~--~~G~F~ 236 (418)
.++.|+.|-.....+.|.|.+.+.- ++. =.|.|+||+|++.+=... ..+.+.+|.+|-+++.+. -+|.+.
T Consensus 71 ~~~kI~Di~~~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~IkfT~W~~s-~~~~leeGd~~rI~na~v~ey~G~~~ 149 (311)
T PRK07217 71 ELVNIADIDEPEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGTIKFTKWAKS-DLPELEEGKSYLLKNVVTDEYQGRFS 149 (311)
T ss_pred CceeeeecCCCCCcEEEEEEEEEecCCCCCceEEEEEEEcCCceEEEEEccCC-CCCcccCCCEEEEEeEEEeeECCEEE
Confidence 5777887743334456888888752 222 149999999999754321 245678999999999885 356665
Q ss_pred EE
Q 014802 237 VI 238 (418)
Q Consensus 237 V~ 238 (418)
++
T Consensus 150 ln 151 (311)
T PRK07217 150 VK 151 (311)
T ss_pred EE
Confidence 53
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=56.12 E-value=33 Score=33.77 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
..++.+.+.++.+|+.+.++|+++|++..+ | + +..++..+.+. ...+..|+.+.+++++.
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~~---g-d---lr~l~~~l~~~-~~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYAG---G-D---LRKAILTLQTA-ALAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C-C---HHHHHHHHHHH-HHcCCCCCHHHHHHHhC
Confidence 456667777899999999999999998553 2 2 33344444443 22234788888887655
No 142
>PRK08402 replication factor A; Reviewed
Probab=55.81 E-value=46 Score=34.03 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=47.0
Q ss_pred cceecccccCCCCcEEEEEEEEEcc--------CCc------EEEeeCCcEEEEEeccccccc--eeeccCcEEEEEEEE
Q 014802 166 EISTIQSLVGQTGRRWVMGVISQLE--------DGH------FYLEDLAASVEIDLSKAKITT--GFFTENTIVVAEGEM 229 (418)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~~--------~g~------~~LED~tG~I~Ldls~~~~~~--g~~~~g~vV~veG~~ 229 (418)
.+.+|+.|......+.+.|.|.... +|. ..|.|.||+|++.+=+..... ..+.+|.+|.+.|.+
T Consensus 61 ~~~kI~dl~~g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~ 140 (355)
T PRK08402 61 PLMHISDLVPGMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKVAKYYNKINVGDVIKVIDAQ 140 (355)
T ss_pred CccCHHHccCCCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhhhhhcccCCCCCEEEEECCE
Confidence 4677887742223355888888742 242 679999999999765432221 236799999998776
Q ss_pred ee---CCeEEEE
Q 014802 230 LV---DGIFQVI 238 (418)
Q Consensus 230 ~~---~G~F~V~ 238 (418)
.. +|.+.++
T Consensus 141 V~e~~~G~~eLs 152 (355)
T PRK08402 141 VRESLSGLPELH 152 (355)
T ss_pred EeecCCCcEEEE
Confidence 53 4554443
No 143
>PRK08727 hypothetical protein; Validated
Probab=55.68 E-value=40 Score=31.95 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=39.3
Q ss_pred hHHHHHHHHH-HHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 3 GQTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 3 ~~~~~~I~~~-Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
+..+.+|++. ++.+|+.+..+++++|++.... +-..+..+++.+...+......||.+.+++++.
T Consensus 164 ~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r----d~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 164 DVARAAVLRERAQRRGLALDEAAIDWLLTHGER----ELAGLVALLDRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 3556666665 7889999999999999985442 222232333333221001123588888887764
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=55.36 E-value=33 Score=33.47 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
+.++.|.+.++..|+.+.++|+++|++..+ .+-..+...++..... +..|+.+.|++++.
T Consensus 165 ei~~~l~~~~~~~~~~i~~~al~~l~~~~~----gd~r~~~~~l~~~~~~----~~~it~~~v~~~~~ 224 (319)
T PRK00440 165 AVAERLRYIAENEGIEITDDALEAIYYVSE----GDMRKAINALQAAAAT----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHc----CCCCCHHHHHHHhC
Confidence 567788888899999999999999988543 2223333333322222 44678888777654
No 145
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=53.95 E-value=54 Score=33.39 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=50.1
Q ss_pred CCCcEEEEEccccCcH---HHHHHH------------HHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHH
Q 014802 282 ANDMFVILSDIWLDNE---EVMGKL------------EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFG 346 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~---~~l~~L------------~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~ 346 (418)
...+|+.++|+|++.. ...+-+ ..+++..-+. +.|..+|+.||.+.+ .+.+++.....
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~s-E~PDlVVfTGD~i~g------~~t~Da~~sl~ 124 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLAS-EKPDLVVFTGDNIFG------HSTQDAATSLM 124 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhc-cCCCEEEEeCCcccc------cccHhHHHHHH
Confidence 3457888999999866 221111 1122222122 379999999998865 23345544433
Q ss_pred H-HHHHHhcCCCccccceEEEecCCCCCCC
Q 014802 347 K-LGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 347 ~-La~~l~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
+ ++ |-+...++++.+=||||--.
T Consensus 125 kAva------P~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 125 KAVA------PAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred HHhh------hHhhcCCCeEEEeccccccc
Confidence 2 33 55567899999999999754
No 146
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=52.96 E-value=33 Score=40.06 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=43.6
Q ss_pred EEEEEEEEEc-----cCC--cEEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEe-eCC--eEEEEEe
Q 014802 180 RWVMGVISQL-----EDG--HFYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEML-VDG--IFQVITC 240 (418)
Q Consensus 180 ~~vlGml~~~-----~~g--~~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~-~~G--~F~V~~i 240 (418)
+.|.||++.. ..| -+.|||.||.+++.+-...+. ..++.+|.+++|+|+.. .+| .+.|.+|
T Consensus 956 v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~i 1028 (1046)
T PRK05672 956 VRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQRREALGARLLLVRGRVQNAEGVRHLVADRL 1028 (1046)
T ss_pred EEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCeEEEEEeee
Confidence 5689999853 345 144899999999987644332 35677999999999986 334 4666666
No 147
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=50.56 E-value=46 Score=39.31 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=43.5
Q ss_pred EEEEEEEEEc-----cCCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEee--CC--eEEEEEe
Q 014802 180 RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV--DG--IFQVITC 240 (418)
Q Consensus 180 ~~vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~~--~G--~F~V~~i 240 (418)
+.|.||++.. ..|+ +.|||.+|.+++.+-...+. ...+.+|.+|+|+|+... +| .+.|..+
T Consensus 994 v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~~~ 1069 (1151)
T PRK06826 994 VIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLREDEEPKLICEEI 1069 (1151)
T ss_pred EEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCCceEEEEeee
Confidence 4589999874 3464 44999999999977543322 356779999999999862 34 4666655
No 148
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=49.12 E-value=56 Score=33.90 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=44.0
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceE
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~ 364 (418)
+|+.++|-- ..........+.+..+.+. ..+..+|-+||-.. .+..+ ....++++.|+..-+- +.-...++|
T Consensus 28 ~F~~vGDwG-~g~~~Q~~VA~~M~~~~~~-~~~~FVls~GDNF~-~Gv~s-v~Dp~f~~~FE~vY~~----~s~~L~~Pw 99 (394)
T PTZ00422 28 RFASLGNWG-TGSKQQKLVASYLKQYAKN-ERVTFLVSPGSNFP-GGVDG-LNDPKWKHCFENVYSE----ESGDMQIPF 99 (394)
T ss_pred EEEEEecCC-CCchhHHHHHHHHHHHHHh-CCCCEEEECCcccc-CCCCC-ccchhHHhhHhhhccC----cchhhCCCe
Confidence 466677743 2222233334444555432 36788899995432 22222 2235566767655321 110025799
Q ss_pred EEecCCCCC
Q 014802 365 LFIPGPDDA 373 (418)
Q Consensus 365 v~vPG~~Dp 373 (418)
-.|.||||-
T Consensus 100 y~vLGNHDy 108 (394)
T PTZ00422 100 FTVLGQADW 108 (394)
T ss_pred EEeCCcccc
Confidence 999999995
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=49.07 E-value=51 Score=34.39 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHH
Q 014802 4 QTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQ 75 (418)
Q Consensus 4 ~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~~ 75 (418)
.+|..|+. ++...|+.|..|++.+|++-+.+. -..++..++.+...-.....-+|.+.++++++++..
T Consensus 247 e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~n----vReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 247 ETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRN----VRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 45555554 579999999999999999866653 233444444444431133558889999998887654
No 150
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=48.49 E-value=60 Score=36.08 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=49.2
Q ss_pred cceecccccCCCCc-EEEEEEEEEcc---CC----cEEEeeCCcEEEEEec--cccccceeeccCcEEEEEEEEeeC-Ce
Q 014802 166 EISTIQSLVGQTGR-RWVMGVISQLE---DG----HFYLEDLAASVEIDLS--KAKITTGFFTENTIVVAEGEMLVD-GI 234 (418)
Q Consensus 166 ~it~I~~Llg~~g~-~~vlGml~~~~---~g----~~~LED~tG~I~Ldls--~~~~~~g~~~~g~vV~veG~~~~~-G~ 234 (418)
.+++|..+ ..|+ +.|.|.+.... .+ ++.+.|.+|.+.+.+= +..+....|.+|.-+.|.|++... |.
T Consensus 49 ~~~~i~~l--~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n~~~~~~~l~~G~~~~v~Gkv~~~~~~ 126 (681)
T PRK10917 49 RLKPIAEL--RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFNQPYLKKQLKVGKRVAVYGKVKRGKYG 126 (681)
T ss_pred CcCCHHHC--CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccCcHHHHhhCCCCCEEEEEEEEEecCCe
Confidence 36677776 4455 55888776531 12 3558999999999765 233335678899999999998532 22
Q ss_pred EEEEEecCCCC
Q 014802 235 FQVITCGFPPL 245 (418)
Q Consensus 235 F~V~~i~~Pp~ 245 (418)
..|.||..
T Consensus 127 ---~qm~~P~~ 134 (681)
T PRK10917 127 ---LEMVHPEY 134 (681)
T ss_pred ---EEEEcCEE
Confidence 34555654
No 151
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=47.82 E-value=81 Score=31.69 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=48.3
Q ss_pred ecccccCCCCcEE-EEEEEEEc-----cCCc----EEEeeCCcEEEEEecccc-ccceeeccCcEEEEEEEEe-eCCe--
Q 014802 169 TIQSLVGQTGRRW-VMGVISQL-----EDGH----FYLEDLAASVEIDLSKAK-ITTGFFTENTIVVAEGEML-VDGI-- 234 (418)
Q Consensus 169 ~I~~Llg~~g~~~-vlGml~~~-----~~g~----~~LED~tG~I~Ldls~~~-~~~g~~~~g~vV~veG~~~-~~G~-- 234 (418)
.|+.| +.|+.+ .+.++.+. .+|+ +.|+|.||.|+-.+=+.. .....|.+|.+|-|+|... -+|.
T Consensus 4 ~i~~l--~~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~~~~~~~~~~g~vv~v~G~v~~y~g~~Q 81 (314)
T PRK13480 4 GIEEL--EVGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVSPEDEATYVPETIVHVKGDIINYRGRKQ 81 (314)
T ss_pred hHhhc--CCCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCChhhHhhcCCCCEEEEEEEEEEECCcce
Confidence 34555 345544 56677663 4565 348999999998654322 2245788999999999975 3555
Q ss_pred EEEEEecCCCC
Q 014802 235 FQVITCGFPPL 245 (418)
Q Consensus 235 F~V~~i~~Pp~ 245 (418)
+.+..|-.+..
T Consensus 82 l~i~~i~~~~~ 92 (314)
T PRK13480 82 LKVNQIRLATE 92 (314)
T ss_pred EEEEEeEECCC
Confidence 55666665443
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=45.99 E-value=60 Score=32.29 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
++.+.|...++..|+.+.++|+++|++..+. +...+...++.+... . ..-|+.+.|++++.
T Consensus 180 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g----~~~~a~~~lekl~~~-~--~~~it~~~v~~~~~ 240 (355)
T TIGR02397 180 DIVERLKKILDKEGIKIEDEALELIARAADG----SLRDALSLLDQLISF-G--NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----ChHHHHHHHHHHHhh-c--CCCCCHHHHHHHhC
Confidence 5677888889999999999999999986553 222222233222221 1 12377777766543
No 153
>PRK06386 replication factor A; Reviewed
Probab=45.00 E-value=1.3e+02 Score=30.82 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=43.2
Q ss_pred cceecccccCCCCc--EEEEEEEEEccC---------C---cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEee
Q 014802 166 EISTIQSLVGQTGR--RWVMGVISQLED---------G---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (418)
Q Consensus 166 ~it~I~~Llg~~g~--~~vlGml~~~~~---------g---~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~ 231 (418)
.+++|+-| ..|. +-|.|.+.+..+ | ...|.|+||+|++.+=.. -+.+|++|-+++.+..
T Consensus 106 ~~~KI~DL--~~g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~TlW~~-----~l~eGd~v~i~na~v~ 178 (358)
T PRK06386 106 KLVKIRDL--SLVTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISSFGK-----PLEDNRFVRIENARVS 178 (358)
T ss_pred CccEeEec--cCCCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEEccc-----cccCCCEEEEeeeEEE
Confidence 45667777 3343 346777776533 2 356999999999975432 2678999999998742
Q ss_pred --CCeEEE
Q 014802 232 --DGIFQV 237 (418)
Q Consensus 232 --~G~F~V 237 (418)
.|.+.+
T Consensus 179 e~~G~~el 186 (358)
T PRK06386 179 QYNGYIEI 186 (358)
T ss_pred ccCCeEEE
Confidence 355444
No 154
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=44.99 E-value=99 Score=24.42 Aligned_cols=45 Identities=2% Similarity=0.085 Sum_probs=30.0
Q ss_pred EEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEEE
Q 014802 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAE 226 (418)
Q Consensus 182 vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~ve 226 (418)
++|.+.+. ..+.|..|.++|...| .+.......=.+.+|++|+|+
T Consensus 2 ~i~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~ 48 (78)
T cd04456 2 QIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVD 48 (78)
T ss_pred eEEEEEEECCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEE
Confidence 46667764 6678889999996555 444322123456799999995
No 155
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.62 E-value=16 Score=33.70 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=44.9
Q ss_pred CCccCHHHHHHHHHhhccCCCChH--HHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHH
Q 014802 17 GYGLRMDALDEILSFVNRFPDAED--EAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQ 75 (418)
Q Consensus 17 Gl~l~~dAl~~l~~~~~~~~~~~~--~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~~ 75 (418)
-++|.++||+.|.+|+.......+ .-...+++.+.+.|+++..--+.+..+++..+..+
T Consensus 9 ~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~~eta~~La~e~v~ 69 (217)
T KOG3350|consen 9 DLQLSADALAALNEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYSDETARKLAAERVE 69 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcCHHHHHHHHHHHHh
Confidence 478999999999999875433211 22335788888999999988899999888887655
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=43.21 E-value=74 Score=33.32 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHHH-HHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 4 QTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 4 ~~~~~I~~~-Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
..|..|++. ++.+|+.+.+|++++|++.+.. +-..++.+++.+.......+.-||.+.++++++.+
T Consensus 283 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~----~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 283 ETRIAILKKKAEEEGIDLPDEVLEFIAKNITS----NVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC----CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 455555555 5778999999999999974442 23344444444443211234558888888888875
No 157
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=43.01 E-value=1.5e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=34.4
Q ss_pred EEEEEEEEccC-C-c---EEEeeCCcEEEEEecccc--ccc------eeeccCcEEEEEEEEe
Q 014802 181 WVMGVISQLED-G-H---FYLEDLAASVEIDLSKAK--ITT------GFFTENTIVVAEGEML 230 (418)
Q Consensus 181 ~vlGml~~~~~-g-~---~~LED~tG~I~Ldls~~~--~~~------g~~~~g~vV~veG~~~ 230 (418)
.|-|-+...+. | + +.|-|.+|.|++.++... ... .-+..|++|.|+|...
T Consensus 3 ~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 65 (102)
T cd04320 3 LIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVK 65 (102)
T ss_pred EEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEE
Confidence 46677776543 4 2 558999999999887432 011 2357899999999975
No 158
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=42.89 E-value=1.5e+02 Score=23.28 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=35.1
Q ss_pred EEEEEEEEEccC--Cc---EEEeeCCc-EEEEEecccc--cc-ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLED--GH---FYLEDLAA-SVEIDLSKAK--IT-TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~~--g~---~~LED~tG-~I~Ldls~~~--~~-~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-+...+. |+ +.|.|.+| .+++.+.... +. ..-+..|++|.|+|+..
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~ 61 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQ 61 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEE
Confidence 346787877665 33 55899999 6999775421 11 12357899999999975
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=42.70 E-value=69 Score=32.91 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=42.4
Q ss_pred HHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 4 QTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 4 ~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
..|..|++ .++.+|+.+..+++.+|++.+... -..++..++.+.........-||.+.+++++...
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~----~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKNIRSN----VRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 44555554 558899999999999999855532 2334444444443311234558888888887754
No 160
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=42.18 E-value=1.1e+02 Score=24.00 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEEEE
Q 014802 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (418)
Q Consensus 182 vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~veG 227 (418)
++|.+.+. ..+.|..+.++|...| .++......=.+.+|++|+|+-
T Consensus 2 ~~g~V~~~~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~ 49 (77)
T cd05793 2 EYGQVEKMLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAP 49 (77)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEe
Confidence 45666664 6678888999995554 4443321234567999999973
No 161
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.89 E-value=1e+02 Score=31.06 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
.+.+.|.+.++.+|+.+.++|+++|++..+ .+...+...++.+..- ..+. |+.+.++.++.
T Consensus 171 ~l~~~l~~~~~~~g~~i~~~al~~l~~~~~----gdlr~~~~~lekl~~y-~~~~--it~~~v~~~~~ 231 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFEDDALHIIAQKAD----GALRDALSIFDRVVTF-CGKN--ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHh-cCCC--CCHHHHHHHhC
Confidence 456778888899999999999999998544 2222222233322221 1112 77777766543
No 162
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=39.87 E-value=79 Score=33.30 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHH-HHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 4 QTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 4 ~~~~~I~~-~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
..|..|++ +.+..|+.+..+++.+|++.+...-..-...++.+...++.. ...+.-+|.+.++++++.+
T Consensus 274 e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~-~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 274 EGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYK-KLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHHh
Confidence 45555554 458889999999999999855432110123444443222332 3445568888888888765
No 163
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=39.83 E-value=99 Score=25.45 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=37.7
Q ss_pred Cc-EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccccc------ceeeccCcEEEEEEEEe
Q 014802 178 GR-RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT------TGFFTENTIVVAEGEML 230 (418)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~~~------~g~~~~g~vV~veG~~~ 230 (418)
|+ +.|-|-|...+. |+ +.|.|.+|.+++.++..... ..-+..|++|.|+|.+.
T Consensus 12 g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 75 (108)
T cd04316 12 GEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVK 75 (108)
T ss_pred CCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEE
Confidence 44 558899987653 44 55899999999988643211 12357899999999975
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.36 E-value=69 Score=33.02 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhc--cCCCcccccHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHE--SSLKSSIIDKESVNRVT 70 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~--~~~~~~~vd~~~~~~~~ 70 (418)
.+++.|.+.++..|+.+.++|+++|++..+. +...+...++.+.-- +...+..|+.+.+++++
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g----~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKAQG----SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 5678888899999999999999999986653 223233333322111 01224567777776655
No 165
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=39.35 E-value=63 Score=37.48 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=47.7
Q ss_pred eecccccCCCCc-EEEEEEEEEc----cCCc----EEEeeCCcEEEEEecccccc-ceeeccCcEEEEEEEEeeCCeEEE
Q 014802 168 STIQSLVGQTGR-RWVMGVISQL----EDGH----FYLEDLAASVEIDLSKAKIT-TGFFTENTIVVAEGEMLVDGIFQV 237 (418)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~~----~~g~----~~LED~tG~I~Ldls~~~~~-~g~~~~g~vV~veG~~~~~G~F~V 237 (418)
+++..| ..++ +.|.|||+.. ..|+ +.|||.+|.+++.+-...+. ...+.++.++.++|+...++.|+.
T Consensus 889 ~~~~~l--~~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 966 (973)
T PRK07135 889 IRLKDL--RINTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDNDYLLFETLKKGDIYEFLISKSKNNKFYI 966 (973)
T ss_pred hhHHHh--cCCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHHHHHHHHhhcCCEEEEEEEEcCCCceEe
Confidence 455555 2334 4689999963 3354 45899999999976533221 112557778999999988888887
Q ss_pred EEe
Q 014802 238 ITC 240 (418)
Q Consensus 238 ~~i 240 (418)
...
T Consensus 967 ~~~ 969 (973)
T PRK07135 967 INN 969 (973)
T ss_pred ccc
Confidence 554
No 166
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=38.87 E-value=1.3e+02 Score=31.63 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=39.8
Q ss_pred Cc-EEEEEEEEEccC-Cc---EEEeeCCcEEEEEeccccc-----cceeeccCcEEEEEEEEee
Q 014802 178 GR-RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEGEMLV 231 (418)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~~-----~~g~~~~g~vV~veG~~~~ 231 (418)
|+ +.|-|-|..... |+ +.|.|.+|.|++.++.... ...-+..|++|.|+|....
T Consensus 16 g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 16 GEEVTLAGWVHEIRDLGGIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred CCEEEEEEEeEeeecCCCeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEc
Confidence 55 458999998654 55 4589999999999875420 1134689999999999853
No 167
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=38.43 E-value=87 Score=32.87 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=43.9
Q ss_pred hHHHHHHHHHH-HHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHH
Q 014802 3 GQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (418)
Q Consensus 3 ~~~~~~I~~~F-k~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~ 73 (418)
...|..|+++. +.+|+.|..|++++|++.+.. +-..++.++..+.......+.-+|.+.++++++.+
T Consensus 265 ~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~----~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 265 EETRKKIARKMLEIEHGELPEEVLNFVAENVDD----NLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 35666666655 678999999999999985553 23344555444443212334568888888888765
No 168
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=38.22 E-value=64 Score=34.36 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=35.4
Q ss_pred EEEEEEEEEc-cCCc---EEEeeCCcEEEEEeccccccceee-------ccCcEEEEEEEEe
Q 014802 180 RWVMGVISQL-EDGH---FYLEDLAASVEIDLSKAKITTGFF-------TENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~-~~g~---~~LED~tG~I~Ldls~~~~~~g~~-------~~g~vV~veG~~~ 230 (418)
+.|-|.+... .-|+ +.|+|.+|+|++-+++.....+.| --|+||+|+|...
T Consensus 64 v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~ 125 (502)
T COG1190 64 VSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLF 125 (502)
T ss_pred eEEecceeeecccCceeEEEEecCCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeee
Confidence 4566665553 4454 559999999999888653333333 2599999999974
No 169
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=38.01 E-value=79 Score=36.98 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=45.4
Q ss_pred eecccccCCCCc-EEEEEEEEEc-----c-CCc----EEEeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEe-eCC
Q 014802 168 STIQSLVGQTGR-RWVMGVISQL-----E-DGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEML-VDG 233 (418)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~~-----~-~g~----~~LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~-~~G 233 (418)
+++..|. .+. +.+.|+++.. . .|+ +.|||.+|.+++.+-...+. ...+.+|.+|+|+|+.. .+|
T Consensus 876 ~~~~~l~--~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~~ 953 (1034)
T PRK07279 876 TPISQLV--KNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYRQYKDELKEGKFYYLKGKIQERDG 953 (1034)
T ss_pred ccHHHHh--cCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 3454443 233 4577888642 2 454 55899999999976543322 35677999999999985 233
Q ss_pred --eEEEEEe
Q 014802 234 --IFQVITC 240 (418)
Q Consensus 234 --~F~V~~i 240 (418)
.+.|..+
T Consensus 954 ~~~l~~~~i 962 (1034)
T PRK07279 954 RLQMVLQQI 962 (1034)
T ss_pred eeEEEEeee
Confidence 3555555
No 170
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=37.80 E-value=1.1e+02 Score=24.84 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=34.3
Q ss_pred EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccc----cc-ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAK----IT-TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~----~~-~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-+...+. |+ +.|.|.+|.+++.++... +. ..-+..|++|.|+|...
T Consensus 2 V~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~ 61 (103)
T cd04319 2 VTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVK 61 (103)
T ss_pred EEEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 346677776543 33 558999999999886431 00 01256899999999974
No 171
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.55 E-value=1.3e+02 Score=31.75 Aligned_cols=69 Identities=29% Similarity=0.489 Sum_probs=47.8
Q ss_pred cccccCCC-CcEEEEEEEEEc---cCCcEE--EeeCCcEEEEEeccccc-cce-eeccCcEEEEEEEEe---eCCeEEEE
Q 014802 170 IQSLVGQT-GRRWVMGVISQL---EDGHFY--LEDLAASVEIDLSKAKI-TTG-FFTENTIVVAEGEML---VDGIFQVI 238 (418)
Q Consensus 170 I~~Llg~~-g~~~vlGml~~~---~~g~~~--LED~tG~I~Ldls~~~~-~~g-~~~~g~vV~veG~~~---~~G~F~V~ 238 (418)
|+.++-+. |.+||=|=|+.. ..|++| |-|+...|.+.+-.-.. .-+ -..+|+-|+|.|..+ ..|.|+..
T Consensus 15 ik~llE~~~~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~ 94 (440)
T COG1570 15 IKRLLERDLGQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEPRGDYQIV 94 (440)
T ss_pred HHHHHHhcCCeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcCCCceEEE
Confidence 45555444 778999999874 467766 89999999997653211 112 236999999999964 56776553
No 172
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=37.27 E-value=1.5e+02 Score=23.64 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=30.5
Q ss_pred EEEEEEEc-cCCcEEEeeCCcEEEE-Eeccccccc-eeeccCcEEEEEE
Q 014802 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITT-GFFTENTIVVAEG 227 (418)
Q Consensus 182 vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~-g~~~~g~vV~veG 227 (418)
++|.+.+. ..+.|..++++|...| .+.. ++.. =.+..|++|+|+-
T Consensus 7 ~~g~V~~~lG~~~~~V~~~dG~~~la~ipg-K~Rk~iwI~~GD~VlVe~ 54 (83)
T smart00652 7 EIAQVVKMLGNGRLEVMCADGKERLARIPG-KMRKKVWIRRGDIVLVDP 54 (83)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEch-hhcccEEEcCCCEEEEEe
Confidence 56666664 5677889999996555 4443 3333 3557999999964
No 173
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.95 E-value=94 Score=33.33 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~ 70 (418)
..++.+.+.+++.|+.+.++|+++|++..+. +-..+..+++.+... +..|+.+.+.+++
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s~G----dlR~aln~Lekl~~~----~~~It~~~V~~~l 237 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLADG----AMRDAESLLERLLAL----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 5678888889999999999999999985542 222232233322211 3357777766653
No 174
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=35.35 E-value=48 Score=32.11 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=17.4
Q ss_pred HHHHHHHHhcccCCCCCCeEEEE-EcCCCCCC
Q 014802 300 MGKLEVVLDGFESVEVVPSLFVF-MGNFCSHP 330 (418)
Q Consensus 300 l~~L~~l~~~~~~~~~~p~~~Vl-~Gnf~s~~ 330 (418)
+..+..+++.+.+. .|..+++ +||++++.
T Consensus 29 ~~~l~~~i~~~r~~--~~~~l~ld~GD~~~gs 58 (277)
T cd07410 29 LARVATLIKKARAE--NPNTLLIDNGDTIQGS 58 (277)
T ss_pred HHHHHHHHHHHHhc--CCCeEEEeCCccCCcc
Confidence 35566666665443 3445555 99998763
No 175
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=35.35 E-value=49 Score=39.21 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=27.5
Q ss_pred cEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEE-EEEcCCCCCC
Q 014802 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLF-VFMGNFCSHP 330 (418)
Q Consensus 285 ~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~-Vl~Gnf~s~~ 330 (418)
.++.++|+| +.-.-+.++..++..+.+. .|..+ +-+||++++.
T Consensus 662 ~Il~~nD~H-g~l~g~~r~~~~i~~~r~~--~~~~l~ld~GD~~~gs 705 (1163)
T PRK09419 662 TILHTNDFH-GHLDGAAKRVTKIKEVKEE--NPNTILVDAGDVYQGS 705 (1163)
T ss_pred EEEEEeecc-cCCCCHHHHHHHHHHHHhh--CCCeEEEecCCCCCCc
Confidence 567789999 4433345666666666543 34444 4499998764
No 176
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=35.04 E-value=1.1e+02 Score=29.74 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=43.0
Q ss_pred CCcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 014802 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (418)
Q Consensus 283 ~~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~ 362 (418)
+.-+.+.+|+| ++- ..|-.+|.-- + ..+-...+|+||||+.-.. +. |.|=-|.-+=..||+
T Consensus 42 ~tPvtvcGDIH-GQf---~Dllelf~ig-G-~~~~t~YLFLGDyVDRG~~----Sv----Et~lLLl~lK~rYP~----- 102 (303)
T KOG0372|consen 42 DTPVTVCGDIH-GQF---YDLLELFRIG-G-DVPETNYLFLGDYVDRGYY----SV----ETFLLLLALKVRYPD----- 102 (303)
T ss_pred CCCcEEeeccc-chH---HHHHHHHHhC-C-CCCCCceEeecchhccccc----hH----HHHHHHHHHhhcCcc-----
Confidence 45678889998 332 2233344321 1 1133689999999997432 22 233334333345775
Q ss_pred eEEEecCCCCC
Q 014802 363 RFLFIPGPDDA 373 (418)
Q Consensus 363 ~~v~vPG~~Dp 373 (418)
.+-++-|||.-
T Consensus 103 ritLiRGNHEs 113 (303)
T KOG0372|consen 103 RITLIRGNHES 113 (303)
T ss_pred eeEEeeccchh
Confidence 88899999985
No 177
>PRK07211 replication factor A; Reviewed
Probab=35.03 E-value=1.1e+02 Score=32.57 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred cceecccccCCCCcEE-EEEEEEE--------ccCCc------EEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEe
Q 014802 166 EISTIQSLVGQTGRRW-VMGVISQ--------LEDGH------FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 166 ~it~I~~Llg~~g~~~-vlGml~~--------~~~g~------~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~ 230 (418)
.+++|++| ..+... |+|.|.. ..+|+ +.|-|.||+|++.+=+...... +.+|++|.++|.+.
T Consensus 268 ~~~~I~dl--~~g~~vdV~GvV~~v~~~rtf~r~dG~~~~vr~l~l~D~TG~IrvTLWg~~A~~~-i~~GdvV~Ikg~~V 344 (485)
T PRK07211 268 DTTPIESL--EIDETVDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDDTGDIRVALWGEKADLD-IGPGDEVVAADVEI 344 (485)
T ss_pred ccccHhhc--CCCCceeEEEEEEEccCcEEEEcCCCCEeEEEEEEEEcCCCcEEEEEeCccccCC-CCCCCEEEEEccEE
Q ss_pred eCC
Q 014802 231 VDG 233 (418)
Q Consensus 231 ~~G 233 (418)
.+|
T Consensus 345 ~dg 347 (485)
T PRK07211 345 QDG 347 (485)
T ss_pred Eec
No 178
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=34.59 E-value=54 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHcCCccCHH
Q 014802 1 MSGQTRKKIQKKMKIRGYGLRMD 23 (418)
Q Consensus 1 m~~~~~~~I~~~Fk~~Gl~l~~d 23 (418)
|+++...-|-.-+++||..|..|
T Consensus 1 m~dk~~eiI~~IA~khgI~L~~D 23 (144)
T PF11657_consen 1 MSDKIEEIIAEIARKHGIALSRD 23 (144)
T ss_pred CCcHHHHHHHHHHHHcCCccCCC
Confidence 89999999999999999999887
No 179
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=34.49 E-value=2e+02 Score=23.60 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=34.8
Q ss_pred EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccc-----cc--ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAK-----IT--TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~-----~~--~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-+..... |+ +.|-|.+|.+++.+.... +. ...+..|++|.|+|...
T Consensus 2 v~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~ 63 (108)
T cd04322 2 VSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPF 63 (108)
T ss_pred EEEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 346677776543 43 448999999999876431 10 12377899999999875
No 180
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=34.18 E-value=1.4e+02 Score=25.91 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=38.8
Q ss_pred cceecccccCCCCcE-EEEEEEEEcc-----CCc-----EEEeeCCcE----EEEEeccccc-cceeeccCcEEEEEEEE
Q 014802 166 EISTIQSLVGQTGRR-WVMGVISQLE-----DGH-----FYLEDLAAS----VEIDLSKAKI-TTGFFTENTIVVAEGEM 229 (418)
Q Consensus 166 ~it~I~~Llg~~g~~-~vlGml~~~~-----~g~-----~~LED~tG~----I~Ldls~~~~-~~g~~~~g~vV~veG~~ 229 (418)
..++|+.+....++. -|+|++.... .|+ +.|-|+|+. |++.+=.... ..-....|+||++.+.-
T Consensus 2 ~f~~i~~~~~~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDVIll~~~k 81 (138)
T cd04497 2 KYTPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIILLRRVK 81 (138)
T ss_pred ceEeHHHHHhccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCEEEEEEEE
Confidence 356777776545554 4999999842 232 458898773 5554432211 11112789999998874
No 181
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=33.79 E-value=1.3e+02 Score=22.55 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=28.0
Q ss_pred EEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEEEE
Q 014802 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (418)
Q Consensus 182 vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~veG 227 (418)
++|.+.+. ..+.|.++.++|...| .+.+.....=.+.+|++|+|+=
T Consensus 5 ~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~ 52 (65)
T PF01176_consen 5 VIGRVTEMLGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEP 52 (65)
T ss_dssp EEEEEEEEESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEe
Confidence 45666664 5677889999996555 5554322234667999999873
No 182
>PLN02502 lysyl-tRNA synthetase
Probab=33.40 E-value=3.8e+02 Score=29.15 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred EEEEEEEEEcc-CCc---EEEeeCCcEEEEEecccccc---------ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT---------TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~-~g~---~~LED~tG~I~Ldls~~~~~---------~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-|.... -|+ +.|.|.+|.|++.++..... ...+..|++|.|.|...
T Consensus 111 V~v~GrV~~~R~~Gk~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~ 174 (553)
T PLN02502 111 VSVAGRIMAKRAFGKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPG 174 (553)
T ss_pred EEEEEEEEEEecCCCeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEE
Confidence 55889998753 465 45999999999987643211 12367899999999875
No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=33.29 E-value=1.1e+02 Score=32.11 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~ 70 (418)
++++.+.+.+++.|+.+.++|++.|++..+. +...+..+++.+... . +.-|+.+.|++++
T Consensus 184 el~~~L~~~~~~eg~~i~~~al~~L~~~s~g----dlr~a~~~Lekl~~~-~--~~~It~~~V~~l~ 243 (451)
T PRK06305 184 TIIDKLALIAKQEGIETSREALLPIARAAQG----SLRDAESLYDYVVGL-F--PKSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh-c--cCCcCHHHHHHHH
Confidence 5677788888899999999999999985542 223333333332211 1 1237777776654
No 184
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=33.23 E-value=1.3e+02 Score=25.77 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=37.2
Q ss_pred EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccccc----ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~~~----~g~~~~g~vV~veG~~~ 230 (418)
+.|.|-|..... |+ +.|.|.+|.+++.++..... ..-+..|++|.|+|...
T Consensus 17 V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~ 75 (135)
T cd04317 17 VTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVR 75 (135)
T ss_pred EEEEEeEehhcccCCEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEE
Confidence 568999988644 43 44899999999988654211 12367999999999875
No 185
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.10 E-value=1.2e+02 Score=32.36 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
.+++.+.+.++..|+.+.++|+++|++..+ | +-..+-.+++.+... . +.-|+.+.+++++.
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~s~---G-dlR~aln~Le~l~~~-~--~~~It~e~V~~~l~ 240 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKRAS---G-GLRDALTMLEQVWKF-S--EGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhC---C-CHHHHHHHHHHHHHh-c--CCCCCHHHHHHHHc
Confidence 567778888899999999999999998543 2 222222222222221 1 12388888877654
No 186
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=33.07 E-value=2.6e+02 Score=26.54 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=38.8
Q ss_pred EEEEEEEEEcc----CCcEEEeeCCcEEEEEeccc-cccc--e-eeccCcEEEEEEEEe-eCCeEEEEEecCCCCCC
Q 014802 180 RWVMGVISQLE----DGHFYLEDLAASVEIDLSKA-KITT--G-FFTENTIVVAEGEML-VDGIFQVITCGFPPLED 247 (418)
Q Consensus 180 ~~vlGml~~~~----~g~~~LED~tG~I~Ldls~~-~~~~--g-~~~~g~vV~veG~~~-~~G~F~V~~i~~Pp~e~ 247 (418)
+..+|.+.... .--|.|||-||.|++..=.. .... + -..+|-.|-|-|... -+|.-.+..-..-+++.
T Consensus 69 V~fVGvvrni~~~ttn~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F~GK~~I~~~~i~~I~d 145 (258)
T COG5235 69 VQFVGVVRNIKTSTTNSMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTFNGKRSISASHISAIED 145 (258)
T ss_pred EEEEEEEEeeeecccceEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeeeCCeeEEehhheeeccc
Confidence 45688877643 23478999999999964211 1100 1 123455677777763 35655555444444443
No 187
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=33.00 E-value=1.6e+02 Score=32.38 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred ceecccccCCCCc-EEEEEEEEEc---cCC-----cEEEee-CCcEEEEEeccccccceeeccCcEEEEEEEEe
Q 014802 167 ISTIQSLVGQTGR-RWVMGVISQL---EDG-----HFYLED-LAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (418)
Q Consensus 167 it~I~~Llg~~g~-~~vlGml~~~---~~g-----~~~LED-~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~ 230 (418)
+++|..+ ..|+ +.|.|.+... ..+ +..++| .+|.+.+.+=+..+....|.+|.-|.+.|++.
T Consensus 23 ~~~i~~~--~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~~~~~~~~~~g~~~~~~Gk~~ 94 (630)
T TIGR00643 23 LQTIGEL--LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNRAFLKKKFKVGSKVVVYGKVK 94 (630)
T ss_pred ccCHHHc--CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECCHHHHhhCCCCCEEEEEEEEE
Confidence 6677777 4455 4578876542 112 356899 99999997655334457789999999999985
No 188
>PF13309 HTH_22: HTH domain
Probab=32.51 E-value=71 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHhhccC
Q 014802 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRF 35 (418)
Q Consensus 1 m~~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~ 35 (418)
|+...|.+|++.+...|+-.=..|..++++.++=+
T Consensus 21 l~~~~k~~iV~~L~~~G~F~lKgav~~vA~~L~iS 55 (64)
T PF13309_consen 21 LSKEEKKEIVRQLYEKGIFLLKGAVEYVAEKLGIS 55 (64)
T ss_pred CCHHHHHHHHHHHHHCCCcccCcHHHHHHHHHCCC
Confidence 56688999999999999999999999999988743
No 189
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=32.22 E-value=1.6e+02 Score=27.91 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcC----CccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhc-cCCCcccccHHHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRG----YGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHE-SSLKSSIIDKESVNRVTSVLL 74 (418)
Q Consensus 4 ~~~~~I~~~Fk~~G----l~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~-~~~~~~~vd~~~~~~~~~~~~ 74 (418)
.+++-+...++..| ..+.+++++.|.+..+.. ...+..+.+.+... |......|+.+.|+.++.++.
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~----p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI----PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc----ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 34444555566555 468999999998855433 33466665555332 123456899999999998864
No 190
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=31.86 E-value=1.6e+02 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=37.6
Q ss_pred EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccccc-------ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT-------TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~~~-------~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-|..... |+ +.|.|.+|+|++.++..... ...+..|++|.|+|...
T Consensus 56 v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 117 (496)
T TIGR00499 56 VSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPF 117 (496)
T ss_pred EEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 458899988654 43 55999999999988643211 12468999999999874
No 191
>PRK15491 replication factor A; Provisional
Probab=31.25 E-value=1.2e+02 Score=31.11 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=43.8
Q ss_pred cceecccccCCCCcEEEEEEEEEc-----------cCCcE---EEeeCCcEEEEEecccc---ccceeeccCcEEEEEEE
Q 014802 166 EISTIQSLVGQTGRRWVMGVISQL-----------EDGHF---YLEDLAASVEIDLSKAK---ITTGFFTENTIVVAEGE 228 (418)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~-----------~~g~~---~LED~tG~I~Ldls~~~---~~~g~~~~g~vV~veG~ 228 (418)
.+++|+.|-.-.+.+.+.|.+... .+|++ .|-|+||+|++.+=+.. +..+.+.+|.++-+.|.
T Consensus 56 ~~~kI~dL~~~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~~ 135 (374)
T PRK15491 56 DTTKIADINESSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISGY 135 (374)
T ss_pred ccccHHHCCCCCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEeee
Confidence 577888884323345588888764 13554 48999999999765432 12366789999999887
Q ss_pred E
Q 014802 229 M 229 (418)
Q Consensus 229 ~ 229 (418)
.
T Consensus 136 ~ 136 (374)
T PRK15491 136 A 136 (374)
T ss_pred e
Confidence 5
No 192
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=31.15 E-value=2e+02 Score=30.38 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=37.0
Q ss_pred Cc-EEEEEEEEEccC-Cc---EEEeeCCcEEEEEecccc----c-cceeeccCcEEEEEEEEe
Q 014802 178 GR-RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAK----I-TTGFFTENTIVVAEGEML 230 (418)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~----~-~~g~~~~g~vV~veG~~~ 230 (418)
|+ +.|.|-|..... |+ +.|.|.+|.+++.+.... + ...-+..|++|.|+|+..
T Consensus 16 ~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~ 78 (450)
T PRK03932 16 GQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVV 78 (450)
T ss_pred CCEEEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEE
Confidence 44 569999988643 54 458999998887664321 0 012368999999999985
No 193
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.14 E-value=1.5e+02 Score=30.86 Aligned_cols=72 Identities=28% Similarity=0.395 Sum_probs=49.3
Q ss_pred cccccCC-CCcEEEEEEEEEc---cCCcEE--EeeCCcEEEEEeccccc-c-ceeeccCcEEEEEEEEe---eCCe--EE
Q 014802 170 IQSLVGQ-TGRRWVMGVISQL---EDGHFY--LEDLAASVEIDLSKAKI-T-TGFFTENTIVVAEGEML---VDGI--FQ 236 (418)
Q Consensus 170 I~~Llg~-~g~~~vlGml~~~---~~g~~~--LED~tG~I~Ldls~~~~-~-~g~~~~g~vV~veG~~~---~~G~--F~ 236 (418)
|++++-. -+.++|-|=|+.. ..|++| |-|.+..|.+.+=.... . ...+.+|+-|+|.|..+ ..|. |.
T Consensus 15 ik~~le~~~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~ 94 (438)
T PRK00286 15 VKSLLERDLGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLI 94 (438)
T ss_pred HHHHHHhhCCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEECCCCCEEEE
Confidence 4445433 3557899999874 458876 78999999997654322 1 23468999999999964 5564 56
Q ss_pred EEEec
Q 014802 237 VITCG 241 (418)
Q Consensus 237 V~~i~ 241 (418)
|.+|-
T Consensus 95 v~~i~ 99 (438)
T PRK00286 95 VEEIE 99 (438)
T ss_pred EEEee
Confidence 66664
No 194
>PRK01889 GTPase RsgA; Reviewed
Probab=30.94 E-value=3e+02 Score=27.94 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=33.8
Q ss_pred EEEEEEEccCCcEEEeeCCcEEEEEeccccc-----cceeeccCcEEEEEE
Q 014802 182 VMGVISQLEDGHFYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEG 227 (418)
Q Consensus 182 vlGml~~~~~g~~~LED~tG~I~Ldls~~~~-----~~g~~~~g~vV~veG 227 (418)
..|.|.....|.|++++.+|.+...++.... ..+..+.|+.|.++.
T Consensus 29 ~~g~v~~~~~~~~~v~~~~~~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~ 79 (356)
T PRK01889 29 EPGRVVEEHRSGYVVATEEGEVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN 79 (356)
T ss_pred ccEEEEEEECCEEEEEECCcEEEEEecchhhccccccCCCCccCcEEEEec
Confidence 4588888877889999888887776665321 236678999999874
No 195
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=30.69 E-value=1.6e+02 Score=31.10 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHH-HHHHHcCC--ccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccC--C-CcccccHHHHHHHHHHH
Q 014802 4 QTRKKIQ-KKMKIRGY--GLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESS--L-KSSIIDKESVNRVTSVL 73 (418)
Q Consensus 4 ~~~~~I~-~~Fk~~Gl--~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~--~-~~~~vd~~~~~~~~~~~ 73 (418)
..|..|+ ++++.+|+ .+..+++++|++.+.. +...++.+++.+... . . .+..||.+.++++++++
T Consensus 278 e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g----d~R~L~gaL~~l~~~-a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 278 KTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD----DVRKIKGSVSRLNFW-SQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC----CHHHHHHHHHHHHHH-HhcccCCCCCCHHHHHHHHhhc
Confidence 4455555 56677886 7999999999985543 344455444444321 1 1 13578999999988875
No 196
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=30.32 E-value=2.1e+02 Score=23.75 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=31.2
Q ss_pred EEEEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEEE
Q 014802 180 RWVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAE 226 (418)
Q Consensus 180 ~~vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~ve 226 (418)
.-++|.+.+. ..+.|..+.++|...| .+.......=++.+|++|+|+
T Consensus 21 ~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe 69 (100)
T PRK04012 21 GEVFGVVEQMLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVA 69 (100)
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEE
Confidence 3477777775 5677888988885544 444322123466799999986
No 197
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.25 E-value=94 Score=34.14 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=43.0
Q ss_pred cccceecccccCCCCc--EEEEEEEEEc---------cCC------cEEEeeCCc-EEEEEeccccccceeeccCcEEEE
Q 014802 164 SCEISTIQSLVGQTGR--RWVMGVISQL---------EDG------HFYLEDLAA-SVEIDLSKAKITTGFFTENTIVVA 225 (418)
Q Consensus 164 ~~~it~I~~Llg~~g~--~~vlGml~~~---------~~g------~~~LED~tG-~I~Ldls~~~~~~g~~~~g~vV~v 225 (418)
.+.+++|..|...... +-|+|+|... .+| .+.|.|.|| +|+|.|=+.....--..+|.||++
T Consensus 295 ~~~f~~i~dI~~~~~~~~VDVIGvV~~v~~~~~i~~k~~g~~~~kR~i~L~D~sg~sI~vTLWG~~A~~~~~~~~~Vva~ 374 (608)
T TIGR00617 295 QFNFVKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRVTLWGDDATKFDVSVQPVIAI 374 (608)
T ss_pred cccceEHHHhhhhcCCCCccEEEEEeEecCceEEEEcCCCCeeeeEEEEEEeCCCCEEEEEEEhhhhhhcCCCCCCEEEE
Confidence 3677888877644332 3489999863 122 377999999 588877654321111357889998
Q ss_pred EEEE
Q 014802 226 EGEM 229 (418)
Q Consensus 226 eG~~ 229 (418)
.|..
T Consensus 375 kg~~ 378 (608)
T TIGR00617 375 KGVR 378 (608)
T ss_pred EeEE
Confidence 8875
No 198
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=29.71 E-value=1.2e+02 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=34.5
Q ss_pred EEEEEEccCCc----EEEeeCCcEEEEEeccccccceeeccCcEEEEEEEE
Q 014802 183 MGVISQLEDGH----FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEM 229 (418)
Q Consensus 183 lGml~~~~~g~----~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~ 229 (418)
.|..++..+|+ +-.-|+||.|.+.+=+. .-++|.+|+||-..|-|
T Consensus 26 ~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~e--~~~~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 26 YGRATKTKDGHEVRSCKVADETGSINISVWDE--EGCLIQPGDIIRLTGGY 74 (134)
T ss_pred eceeeeccCCCEEEEEEEecccceEEEEEecC--cCcccCCccEEEecccc
Confidence 68888888884 44799999999976552 23688899999777665
No 199
>PLN03025 replication factor C subunit; Provisional
Probab=29.65 E-value=1.5e+02 Score=29.39 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhh
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFV 32 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~ 32 (418)
+.++.+.+.+++.|+.+.++|+++|++..
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~ 190 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTA 190 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 56778888899999999999999998743
No 200
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=29.25 E-value=2.5e+02 Score=21.79 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred EEEEEEEEccC-Cc---EEEeeCCcEEEEEecccccc----ceeeccCcEEEEEEEEe
Q 014802 181 WVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML 230 (418)
Q Consensus 181 ~vlGml~~~~~-g~---~~LED~tG~I~Ldls~~~~~----~g~~~~g~vV~veG~~~ 230 (418)
.|-|-+...+. |+ +.|.|.+|.+++.++..... ..-+..|++|.|+|...
T Consensus 3 ~v~Gwv~~~R~~g~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~ 60 (84)
T cd04323 3 KVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVK 60 (84)
T ss_pred EEEEEEEEEecCCCcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEE
Confidence 45676666432 33 45899999999987643211 12356899999999874
No 201
>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []. This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.
Probab=29.13 E-value=94 Score=30.26 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCC-----CCC------Ccc----hHHHHHHHHHHH--HHHhcCCCccccceEEEecCCCCCCCCCC
Q 014802 316 VPSLFVFMGNFCSHPC-----NLS------FHS----FSSLRLQFGKLG--QMIAAHPRLKEHSRFLFIPGPDDAGPSTV 378 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~-----~~~------~~~----~~~~~~~f~~La--~~l~~~p~l~~~~~~v~vPG~~Dp~~~~~ 378 (418)
.|..+||+|.-+..|- +.+ .+. ..-+++-|.+|- +.+++.....-..++|++=|..|.+..-.
T Consensus 137 Vp~VLILLGgt~~SPKE~YeInl~~l~~~s~e~slst~~clRkLfRsLf~aD~Fse~~~~Pl~~TiVmv~~hRdcg~dWF 216 (264)
T PF06581_consen 137 VPRVLILLGGTAVSPKEFYEINLERLVPNSKEQSLSTAVCLRKLFRSLFTADAFSELQAPPLMGTIVMVQGHRDCGSDWF 216 (264)
T ss_dssp --EEEEEESS-SSS-SEEEEEE-TTS--------SHHHHHHHHHHHHHHHTTTT---S-----EEEEEEEEECCC--SSS
T ss_pred cceEEEEecCccCCcceeEEEcchhhcccccccccccHHHHHHHHHHHHcccchhhccCCCccceEEEEEcCCCCCcccc
Confidence 6888999997665541 101 111 122455555542 33455555555678999999999998678
Q ss_pred CCCCC
Q 014802 379 LPRCA 383 (418)
Q Consensus 379 lPqpp 383 (418)
.|++-
T Consensus 217 ~PKln 221 (264)
T PF06581_consen 217 RPKLN 221 (264)
T ss_dssp EEETT
T ss_pred ccccc
Confidence 88774
No 202
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.74 E-value=1.3e+02 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhc
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVN 33 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~ 33 (418)
.++++|.+.+++.|+++.++|+++|++..+
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 567888899999999999999999998665
No 203
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=28.62 E-value=2.7e+02 Score=21.39 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=36.5
Q ss_pred EEEEEEEE--ccCCcEE--EeeCCcEEEEEeccc-ccc-ceeeccCcEEEEEEEEe-eCCe--EEEEEe
Q 014802 181 WVMGVISQ--LEDGHFY--LEDLAASVEIDLSKA-KIT-TGFFTENTIVVAEGEML-VDGI--FQVITC 240 (418)
Q Consensus 181 ~vlGml~~--~~~g~~~--LED~tG~I~Ldls~~-~~~-~g~~~~g~vV~veG~~~-~~G~--F~V~~i 240 (418)
+|=|-++. ...|+++ |.|.++.|.+.+=+. ... .-.+.+|+-|.|.|... ..|. |.|.+|
T Consensus 2 ~v~GeVs~~~~~~GHvyfsLkD~~a~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~~~G~~ql~v~~i 70 (73)
T cd04487 2 HIEGEVVQIKQTSGPTIFTLRDETGTVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEPRDGQLQIEVESL 70 (73)
T ss_pred EEEEEEeccccCCCCEEEEEEcCCEEEEEEEEchhccCCcCCCCCCCEEEEEEEEecCCeEEEEEEeeE
Confidence 34565553 2567765 789999998865321 111 12447999999999975 3444 344443
No 204
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=28.29 E-value=2.2e+02 Score=31.07 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhc-CCCccccceEEEecCCCCCCCCCCCCCC
Q 014802 304 EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA-HPRLKEHSRFLFIPGPDDAGPSTVLPRC 382 (418)
Q Consensus 304 ~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~-~p~l~~~~~~v~vPG~~Dp~~~~~lPqp 382 (418)
+.+|++..+....+.+++..||.+..-.- ....+.-.+-...+.+.+++ || .++++.-=||||+...+++|-.
T Consensus 198 es~L~~ike~~~~iD~I~wTGD~~~H~~w--~~t~~~~l~~~~~l~~~~~e~Fp----dvpvypalGNhe~~P~N~F~~~ 271 (577)
T KOG3770|consen 198 ESALDHIKENHKDIDYIIWTGDNVAHDVW--AQTEEENLSMLSRLTSLLSEYFP----DVPVYPALGNHEIHPVNLFAPG 271 (577)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcccch--hhhHHHHHHHHHHHHHHHHHhCC----CCceeeecccCCCCcHhhcCCC
Confidence 34556665433237899999999865411 11223333445567777665 46 5799999999999887888888
Q ss_pred CcchH
Q 014802 383 ALPKY 387 (418)
Q Consensus 383 plp~~ 387 (418)
++|+.
T Consensus 272 ~~~~~ 276 (577)
T KOG3770|consen 272 SVPKR 276 (577)
T ss_pred CCcch
Confidence 88887
No 205
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=27.81 E-value=3e+02 Score=26.44 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcccCCCCCC-eEEEEEc--CCCCCCCCCC-C--cchHHHHHHHHHHHHHHhcCCCccccc-eEEEecCCC
Q 014802 299 VMGKLEVVLDGFESVEVVP-SLFVFMG--NFCSHPCNLS-F--HSFSSLRLQFGKLGQMIAAHPRLKEHS-RFLFIPGPD 371 (418)
Q Consensus 299 ~l~~L~~l~~~~~~~~~~p-~~~Vl~G--nf~s~~~~~~-~--~~~~~~~~~f~~La~~l~~~p~l~~~~-~~v~vPG~~ 371 (418)
.++-|..+|-.-++. .| .++|+.| |-+. +...+ + -...+|+++..++...|.++. ..+ -+++.|||=
T Consensus 53 ALkvL~~ifp~~~s~--~p~lvtVffGaNDs~l-~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~---~~~riIlitPpp~ 126 (245)
T KOG3035|consen 53 ALKVLPEIFPKGSSI--QPVLVTVFFGANDSCL-PEPSSLGQHVPLEEYKDNLRKIVSHLKSLS---PETRIILITPPPV 126 (245)
T ss_pred HHHHhhhhccccccC--CceEEEEEecCccccC-CCCCCCCCccCHHHHHHHHHHHHHHhhccC---CcceEEEecCCCc
Confidence 344455555443332 35 4778888 3332 22111 1 135889999999998887542 223 455668887
Q ss_pred CCC
Q 014802 372 DAG 374 (418)
Q Consensus 372 Dp~ 374 (418)
|-.
T Consensus 127 de~ 129 (245)
T KOG3035|consen 127 DEE 129 (245)
T ss_pred CHH
Confidence 753
No 206
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=27.52 E-value=2.5e+02 Score=21.80 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=33.5
Q ss_pred EEEEEEEEcc-CCc---EEEeeCCcEEEEEecccccc-----ceeeccCcEEEEEEEEe
Q 014802 181 WVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT-----TGFFTENTIVVAEGEML 230 (418)
Q Consensus 181 ~vlGml~~~~-~g~---~~LED~tG~I~Ldls~~~~~-----~g~~~~g~vV~veG~~~ 230 (418)
.|-|-+...+ -|+ +.|-|.+|.+++.++..... ..-+..|++|.|+|...
T Consensus 3 ~i~Gwv~~~R~~g~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~ 61 (85)
T cd04100 3 TLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVV 61 (85)
T ss_pred EEEEEEehhccCCCEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEE
Confidence 4556665543 233 45899999999987654211 12457899999999874
No 207
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.49 E-value=1.7e+02 Score=29.77 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~ 71 (418)
++.+.+.+.+++.|..+.++|+++|++..+ | +...+..+++..... ....|+.+.+.+++.
T Consensus 182 el~~~L~~~~~~~g~~i~~~al~~ia~~s~---G-~~R~al~~l~~~~~~---~~~~It~~~v~~~l~ 242 (363)
T PRK14961 182 KIFNFLKYILIKESIDTDEYALKLIAYHAH---G-SMRDALNLLEHAINL---GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHHh---cCCCCCHHHHHHHHC
Confidence 456677777889999999999999998543 2 222223333322221 234566666665543
No 208
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=27.32 E-value=1.6e+02 Score=27.08 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHH-HHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHH
Q 014802 7 KKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (418)
Q Consensus 7 ~~I~~~-Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~ 70 (418)
..+++. .+..|+.+.++++++|++... .+...+..+++.+..--...+.-|+.+.+.+++
T Consensus 165 ~~~l~~~~~~~~~~~~~~~l~~L~~~~~----gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 165 IAALQSRAARRGLQLPDEVADYLLRHGS----RDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 344443 456799999999999998422 223334444433332100113458887777664
No 209
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=27.27 E-value=3.6e+02 Score=22.27 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCc-EEEEEEEEEcc--CCcEEEeeCC-cEEEEEeccccccceeeccCcEEEEEEEEeeCC-eEEEEEecCCC
Q 014802 177 TGR-RWVMGVISQLE--DGHFYLEDLA-ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG-IFQVITCGFPP 244 (418)
Q Consensus 177 ~g~-~~vlGml~~~~--~g~~~LED~t-G~I~Ldls~~~~~~g~~~~g~vV~veG~~~~~G-~F~V~~i~~Pp 244 (418)
.|+ +.++|-+.+.. .+.+.|+..+ |.|.+.+.... -...+.+|-|.|+...++ ...+....+++
T Consensus 17 ~gk~VrivGkv~~~~~~g~~~~l~~~d~~~V~v~l~~~~----~~~~~~~vEviG~V~~~~~~~~i~~~~~~~ 85 (109)
T PF08661_consen 17 VGKTVRIVGKVESVDPDGGSATLSTSDGGQVTVSLNPPS----DEELSKYVEVIGKVNDDGTVLSIRYFSFTD 85 (109)
T ss_dssp TTSEEEEEEEEEEE-TTSSEEEEE-TTS-EEEEEESS------SS---SEEEEEEEE-TTS-EEEEEEEE---
T ss_pred CCCeEEEEEEEeeEcCCCCEEEEEcCCCCEEEEEeCCCC----CCCCCCEEEEEEEEcCCCCceEEEEEEecc
Confidence 365 45999999977 6667788655 47888765331 223567789999987655 34555555553
No 210
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=27.02 E-value=98 Score=32.66 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=46.2
Q ss_pred CCCcEEEEEccccCcHHH-HHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccc
Q 014802 282 ANDMFVILSDIWLDNEEV-MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (418)
Q Consensus 282 ~~~~~v~lSDv~ld~~~~-l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~ 360 (418)
....+++.+|+....... .. .-+.+.+ .|.+++++||++=. ..+.. ..-|.+...+. -+++
T Consensus 146 ~~~~~~i~GDlG~~~~~~s~~------~~~~~~~-k~d~vlhiGDlsYa-~~~~n-------~~wD~f~r~vE---p~As 207 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPYTSTL------RNQEENL-KPDAVLHIGDLSYA-MGYSN-------WQWDEFGRQVE---PIAS 207 (452)
T ss_pred CceeEEEEccccccccccchH------hHHhccc-CCcEEEEecchhhc-CCCCc-------cchHHHHhhhh---hhhc
Confidence 345788999987766642 11 1111111 48899999998522 11110 34455555554 2456
Q ss_pred cceEEEecCCCCCCC
Q 014802 361 HSRFLFIPGPDDAGP 375 (418)
Q Consensus 361 ~~~~v~vPG~~Dp~~ 375 (418)
..+..++.|||+-..
T Consensus 208 ~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 208 YVPYMVCSGNHEIDW 222 (452)
T ss_pred cCceEEecccccccC
Confidence 689999999999754
No 211
>PRK12366 replication factor A; Reviewed
Probab=26.86 E-value=2.4e+02 Score=31.14 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=42.4
Q ss_pred ccceecccccCC--CCc-EEEEEEEEEcc--------CC------cEEEeeCCcEEEEEeccccccceeeccCcEEEEEE
Q 014802 165 CEISTIQSLVGQ--TGR-RWVMGVISQLE--------DG------HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEG 227 (418)
Q Consensus 165 ~~it~I~~Llg~--~g~-~~vlGml~~~~--------~g------~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG 227 (418)
+.+++|+.|... .+. +-|+|.+.... +| .+.|.|.||+|++.+=+..... .+.+|.+|.+.|
T Consensus 393 ~~~~~i~dI~~~~~~~~~VdVig~V~~v~~~~~i~~k~G~~~~~r~i~l~D~TG~I~vtlWg~~a~~-~~~~G~vi~i~~ 471 (637)
T PRK12366 393 EKIYKIKDILNLEEDDNDITVIARVVEDYPVNEFERSDGSKGKVRNIELADGTGSIRLTLWDDDAEI-EIKEGDAIKILH 471 (637)
T ss_pred eccccHHHhhcccCCCcEEEEEEEEEEccCceEEEecCCCEeEEEEEEEEeCCCEEEEEEecccccc-CCCCCCEEEEEe
Confidence 456666666432 233 45899888642 23 2569999999999775432221 246899999988
Q ss_pred EEe
Q 014802 228 EML 230 (418)
Q Consensus 228 ~~~ 230 (418)
.+.
T Consensus 472 ~~V 474 (637)
T PRK12366 472 PYV 474 (637)
T ss_pred eEE
Confidence 764
No 212
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.73 E-value=1.9e+02 Score=30.22 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=45.9
Q ss_pred CcEEEEEEEEEc---cCCcEE--EeeCCcEEEEEecccccc--ceeeccCcEEEEEEEEe---eCCe--EEEEEec
Q 014802 178 GRRWVMGVISQL---EDGHFY--LEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEML---VDGI--FQVITCG 241 (418)
Q Consensus 178 g~~~vlGml~~~---~~g~~~--LED~tG~I~Ldls~~~~~--~g~~~~g~vV~veG~~~---~~G~--F~V~~i~ 241 (418)
+.+||-|=|+.. ..|++| |-|....|.+.+=..... .-.+.+|+=|+|.|..+ ..|. |.|.+|-
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~ 93 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQ 93 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEec
Confidence 457899999874 468876 799999999976432211 22357999999999953 5675 5666776
No 213
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=26.28 E-value=2.7e+02 Score=21.35 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCC-ccCHHHHHHHHHhhcc
Q 014802 4 QTRKKIQKKMKIRGY-GLRMDALDEILSFVNR 34 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl-~l~~dAl~~l~~~~~~ 34 (418)
.+|+-|.+.++..|+ ..++.|++.|.+.+..
T Consensus 7 ~l~~~va~il~~~GF~~~~~~al~~Ltdi~~~ 38 (77)
T PF07524_consen 7 LLRRSVAQILKHAGFDSASPSALDTLTDILQR 38 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHHHH
Confidence 578888889999999 5999999999876554
No 214
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=25.79 E-value=3.6e+02 Score=21.81 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHhhccCCCC--hHHHHHHHHHHHhhc
Q 014802 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDA--EDEAIDLLLDQFEHE 53 (418)
Q Consensus 6 ~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~--~~~~l~~ll~~i~k~ 53 (418)
-.+.++..+.||+.|+++=.+.++.++....-. +++.-.+++.+|++.
T Consensus 17 ~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~i 66 (85)
T PF11116_consen 17 AKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKI 66 (85)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 467788899999999999999999888654332 456777888888875
No 215
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=25.42 E-value=1.1e+02 Score=29.33 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCccCHHHHHHHHHhhccCCCC------hHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHhhhhc
Q 014802 17 GYGLRMDALDEILSFVNRFPDA------EDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAE 81 (418)
Q Consensus 17 Gl~l~~dAl~~l~~~~~~~~~~------~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~~~~~~~~~~~~ 81 (418)
.=||+.+.++.|..+|+.-.-. |.--|-.||.++.....+-.++=|.+.=++|+..+++.++..+
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeEEe 168 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEEE 168 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHHHH
Confidence 4578999999999999864221 2345777888888763356677789999999998887654444
No 216
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.92 E-value=1.9e+02 Score=30.77 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccCCCcccccHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~~~~~~vd~~~~~~~~ 70 (418)
++++.+.+.++..|+.+.++|+++|++..+. +-..+..+++.+... ....|+.+.+++++
T Consensus 182 el~~~L~~i~k~egi~id~~al~~La~~s~G----~lr~al~~Ldkl~~~---~~~~It~~~V~~~l 241 (486)
T PRK14953 182 QIKEYLKRICNEEKIEYEEKALDLLAQASEG----GMRDAASLLDQASTY---GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh---cCCCcCHHHHHHHh
Confidence 5677888889999999999999999985442 122333333322221 12346766666643
No 217
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=24.69 E-value=2.2e+02 Score=27.61 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhcc-CCCcccccHHHHHHHHHH
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES-SLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~-~~~~~~vd~~~~~~~~~~ 72 (418)
..++.+.+.++..++.+.++|+++|++..+.. ...+..+++.++... ......|+.+.+++++..
T Consensus 163 e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~----pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 163 ELAEIVSRSAGLLNVEIEPEAALEIARRSRGT----PRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 34455555667889999999999998854432 334455555544320 123456888888887764
No 218
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.59 E-value=1.7e+02 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhh
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFV 32 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~ 32 (418)
.+.+.+.+.++..|..+.++|+++|++..
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 56777888889999999999999998743
No 219
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=24.43 E-value=84 Score=27.82 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHcCCccCHH----HHHHHHHhhccCCC-ChHHHHHHH---HHHHhhccCCC
Q 014802 1 MSGQTRKKIQKKMKIRGYGLRMD----ALDEILSFVNRFPD-AEDEAIDLL---LDQFEHESSLK 57 (418)
Q Consensus 1 m~~~~~~~I~~~Fk~~Gl~l~~d----Al~~l~~~~~~~~~-~~~~~l~~l---l~~i~k~~~~~ 57 (418)
|+++...-|...-.+||..|..| -++.+-+.+-.... .....++.+ ++++..+|+..
T Consensus 1 m~dki~e~I~~IA~KHGIal~rDDPILilqTiNerLlees~kAQq~mL~~FkeelE~iasrW~~d 65 (144)
T PRK13895 1 MDDKIEELIKEIAAKHGIAVGRDDPILILQTINDRLMQDSAKAQQEMLDQFKEELESIASRWGDD 65 (144)
T ss_pred CCcHHHHHHHHHHHHcCcccCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999888 55555554443211 123455554 77777788643
No 220
>PHA01513 mnt Mnt
Probab=24.26 E-value=2.8e+02 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHhhccC
Q 014802 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRF 35 (418)
Q Consensus 1 m~~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~ 35 (418)
|...++++|-.+.+.+|.++..+.+..|.+.+.+.
T Consensus 12 LP~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~~~ 46 (82)
T PHA01513 12 LPYELKEKLKQRAKANGRSLNAELVQIVQDALSKP 46 (82)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 45689999999999999999999999999988764
No 221
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=24.22 E-value=2.5e+02 Score=23.01 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=31.3
Q ss_pred EEEEEEEEEc----------cCCc---EEEeeC-CcEEEEEeccccc--cceeeccCcEEEEEEE
Q 014802 180 RWVMGVISQL----------EDGH---FYLEDL-AASVEIDLSKAKI--TTGFFTENTIVVAEGE 228 (418)
Q Consensus 180 ~~vlGml~~~----------~~g~---~~LED~-tG~I~Ldls~~~~--~~g~~~~g~vV~veG~ 228 (418)
..+.|+++.. .+|+ +.|-|+ +|.|.+.+-+... -...+.+|.++-+.|-
T Consensus 12 ~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~ 76 (104)
T cd04474 12 WTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKG 76 (104)
T ss_pred EEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEecc
Confidence 3478888752 1354 558999 8899997764321 1356678888776553
No 222
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.19 E-value=2e+02 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhc
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVN 33 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~ 33 (418)
.+.+.+.+.+++.|+.+.++|+++|++..+
T Consensus 179 el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 179 KLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 567788888899999999999999998554
No 223
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=24.11 E-value=2e+02 Score=28.02 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=40.2
Q ss_pred EEEEEEEEcc------CCc--EEEeeCCc--EEEEEeccccc-----cceeeccCcEEEEEEEEeeC-CeEEEEEecCCC
Q 014802 181 WVMGVISQLE------DGH--FYLEDLAA--SVEIDLSKAKI-----TTGFFTENTIVVAEGEMLVD-GIFQVITCGFPP 244 (418)
Q Consensus 181 ~vlGml~~~~------~g~--~~LED~tG--~I~Ldls~~~~-----~~g~~~~g~vV~veG~~~~~-G~F~V~~i~~Pp 244 (418)
.|+|+|.-.. ++. |.|.|.|| .|.+.++.... ..+-. .|++|-|.|..+.+ ..+.|..|..+.
T Consensus 70 ~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vsr~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 70 RIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVSRNERQLDVERIELVR 148 (256)
T ss_dssp EEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEESSSEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEccCcEEEEEEEEEccC
Confidence 3677776542 332 56899999 77777664321 11222 89999999999722 358888888665
Q ss_pred C
Q 014802 245 L 245 (418)
Q Consensus 245 ~ 245 (418)
.
T Consensus 149 ~ 149 (256)
T PF10451_consen 149 D 149 (256)
T ss_dssp S
T ss_pred C
Confidence 4
No 224
>PRK15491 replication factor A; Provisional
Probab=23.91 E-value=2.8e+02 Score=28.58 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=41.4
Q ss_pred ccceecccccCCCCc-EEEEEEEEEc--------cCCc------EEEeeCCcEEEEEecccccc-ceeeccCcEEEEEEE
Q 014802 165 CEISTIQSLVGQTGR-RWVMGVISQL--------EDGH------FYLEDLAASVEIDLSKAKIT-TGFFTENTIVVAEGE 228 (418)
Q Consensus 165 ~~it~I~~Llg~~g~-~~vlGml~~~--------~~g~------~~LED~tG~I~Ldls~~~~~-~g~~~~g~vV~veG~ 228 (418)
+..++|..|. .+. .-|+|.+... .+|+ +.|.|.||+|++.+=+.... ....-.|+.|.+.+.
T Consensus 274 ~~f~~I~dl~--~~~~~dv~G~V~~v~~~~~~~~~~G~~~~~r~i~l~D~Tg~Ir~tlWg~~a~~~~~~~~g~~i~i~~~ 351 (374)
T PRK15491 274 EDFTPIADII--PGQPYSIKGAVSGLGDLKEFTKSDGSENKVSNIYVSDDTGRIRIALWGEKAELVDKLDIDTPIKIIDA 351 (374)
T ss_pred CCccCHHHcC--CCCceeEEEEEEEcCCcEEEEccCCCEeEEEeEEEEeCCCcEEEEEcccccccccccCCCCeEEEEEE
Confidence 4677787773 334 4589999875 2343 67999999999976543221 112334566666666
Q ss_pred EeeCC
Q 014802 229 MLVDG 233 (418)
Q Consensus 229 ~~~~G 233 (418)
|...|
T Consensus 352 ~~k~g 356 (374)
T PRK15491 352 FSKSG 356 (374)
T ss_pred EEeec
Confidence 65444
No 225
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=23.79 E-value=3e+02 Score=29.64 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHhhccCCCCh----HHHHHHHHHH---HhhccCCCcccccHHHHHHHHHH
Q 014802 5 TRKKIQKKMKIRGY-GLRMDALDEILSFVNRFPDAE----DEAIDLLLDQ---FEHESSLKSSIIDKESVNRVTSV 72 (418)
Q Consensus 5 ~~~~I~~~Fk~~Gl-~l~~dAl~~l~~~~~~~~~~~----~~~l~~ll~~---i~k~~~~~~~~vd~~~~~~~~~~ 72 (418)
.-+-|....+.+|| .+..+|++.|.++..+..+.. -.++..|+.+ +++. .....|+.++|++++++
T Consensus 432 ~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~--~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 432 YARFIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARK--EGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHH--CT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHHc
Confidence 33455556677887 999999999999998873321 2466666433 3332 56789999999999875
No 226
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.75 E-value=2.1e+02 Score=31.50 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHhhc
Q 014802 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVN 33 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~ 33 (418)
.+.+++.+.+++.|+.+.++|+++|++..+
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 667888888999999999999999998554
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=23.64 E-value=2.4e+02 Score=26.12 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhhccC-CCcccccHHHHHHHHH
Q 014802 7 KKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESS-LKSSIIDKESVNRVTS 71 (418)
Q Consensus 7 ~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~~~~~~~~~l~~ll~~i~k~~~-~~~~~vd~~~~~~~~~ 71 (418)
..+.+.+..+|+.+.++|+++|++... + +-..+..+++.+... . .....||...+++++.
T Consensus 164 ~~l~~~~~~~~v~l~~~al~~L~~~~~---g-n~~~l~~~l~~l~~~-~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 164 AALKAAAAERGLQLADEVPDYLLTHFR---R-DMPSLMALLDALDRY-SLEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcc---C-CHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHh
Confidence 344455578899999999999997322 2 233444444444432 1 2346788888888764
No 228
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.45 E-value=77 Score=32.02 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCccccceEEEecCCCCCCC
Q 014802 337 SFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (418)
Q Consensus 337 ~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~Dp~~ 375 (418)
...+|..=.+++-++|.+.|++ .-+|++=|.|||+.
T Consensus 157 vr~dYfdWpk~i~~~l~~~~~~---a~vVV~lGaND~q~ 192 (354)
T COG2845 157 VRDDYFDWPKAIPELLDKHPKP---AAVVVMLGANDRQD 192 (354)
T ss_pred ccccccccHHHHHHHHHhcCCc---cEEEEEecCCCHHh
Confidence 3456766678888889988866 68999999999953
No 229
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=22.96 E-value=1.7e+02 Score=30.84 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=38.7
Q ss_pred Cc-EEEEEEEEEccC-Cc---EEEeeCC--cEEEEEeccccc-----cceeeccCcEEEEEEEEe
Q 014802 178 GR-RWVMGVISQLED-GH---FYLEDLA--ASVEIDLSKAKI-----TTGFFTENTIVVAEGEML 230 (418)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~t--G~I~Ldls~~~~-----~~g~~~~g~vV~veG~~~ 230 (418)
|+ +.|.|-|..... |+ +.|.|.+ |.|++.++.... ....+..|++|.|+|+..
T Consensus 16 g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~ 80 (453)
T TIGR00457 16 GDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVV 80 (453)
T ss_pred CCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEE
Confidence 44 568999987654 43 5589999 999998875411 113468999999999964
No 230
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=22.93 E-value=3.3e+02 Score=29.20 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=37.1
Q ss_pred EEEEEEEEEcc-CCc---EEEeeCCcEEEEEecccccc-------ceeeccCcEEEEEEEEe
Q 014802 180 RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT-------TGFFTENTIVVAEGEML 230 (418)
Q Consensus 180 ~~vlGml~~~~-~g~---~~LED~tG~I~Ldls~~~~~-------~g~~~~g~vV~veG~~~ 230 (418)
+.|-|-|.... -|+ +.|.|.+|+|++.+++.... ...+..|++|.|+|...
T Consensus 68 v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~ 129 (505)
T PRK12445 68 VSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLF 129 (505)
T ss_pred EEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEE
Confidence 56899988754 354 45999999999988743211 12367899999999975
No 231
>PRK07218 replication factor A; Provisional
Probab=22.83 E-value=4.7e+02 Score=27.46 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=41.1
Q ss_pred ceecccccCCCCcEEEEEEEEEcc-------CC-----cEEEeeCCcEEEEEeccccccceeeccCcEEEEEEEEee--C
Q 014802 167 ISTIQSLVGQTGRRWVMGVISQLE-------DG-----HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV--D 232 (418)
Q Consensus 167 it~I~~Llg~~g~~~vlGml~~~~-------~g-----~~~LED~tG~I~Ldls~~~~~~g~~~~g~vV~veG~~~~--~ 232 (418)
+..|..|--....+.|.|.+.+.. +| ...|.|+||+|++.+=... .-+.+|.+|-+.|.+.. +
T Consensus 162 ~~kI~DL~~g~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~~---~~l~~Gd~v~I~na~v~e~~ 238 (423)
T PRK07218 162 DKKLIDLGPGDRGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDPL---PEIEIGASIRIEDAYVREFR 238 (423)
T ss_pred ccchhhccCCCCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEeccc---ccCCCCCEEEEeeeEEeccC
Confidence 444555521112245677776542 23 1358999999999765432 23679999999998752 3
Q ss_pred CeEEE
Q 014802 233 GIFQV 237 (418)
Q Consensus 233 G~F~V 237 (418)
|.+.+
T Consensus 239 G~~el 243 (423)
T PRK07218 239 GVPSV 243 (423)
T ss_pred CeEEE
Confidence 55433
No 232
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.81 E-value=2.4e+02 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=39.5
Q ss_pred ccceecccccCCC-CcEEEEEEEEEcc----CC---cEEEeeCCcEEEEEecccccc----ceeeccCcEEEEEEEE
Q 014802 165 CEISTIQSLVGQT-GRRWVMGVISQLE----DG---HFYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEM 229 (418)
Q Consensus 165 ~~it~I~~Llg~~-g~~~vlGml~~~~----~g---~~~LED~tG~I~Ldls~~~~~----~g~~~~g~vV~veG~~ 229 (418)
+-|||.. .. .+.+|+|.|+..+ ++ +..+-|+||.+-+--.+-.+. -...-.+.+|+|-|+.
T Consensus 36 yliTPlG----~k~nRifivGtltek~~i~ed~~~~R~rVvDpTGsF~Vyag~yqPEa~a~l~~ve~~~~VaViGKi 108 (196)
T COG3390 36 YLITPLG----LKVNRIFIVGTLTEKEGIGEDREYWRIRVVDPTGSFYVYAGQYQPEAKAFLEDVEVPDLVAVIGKI 108 (196)
T ss_pred EEechhh----hheeEEEEEEEEEeccCcCCcccEEEEEEecCCceEEEEcCCCChHHHHHHHhccCCceEEEeccc
Confidence 5677763 33 3468999999853 22 456999999988832221221 1233577899999995
No 233
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=22.76 E-value=2.2e+02 Score=27.98 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=39.0
Q ss_pred CcEEEEEccccCcHHHHHHHHHHHhcccCCCCCCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccce
Q 014802 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (418)
Q Consensus 284 ~~~v~lSDv~ld~~~~l~~L~~l~~~~~~~~~~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~ 363 (418)
.-++|.+|||=. - ..|-++| +... ..+-.-++||||+++.-.. +.+. .+| |-.+=-.|| -+
T Consensus 60 ~pvtvcGDvHGq-f---~dl~ELf-kiGG-~~pdtnylfmGDyvdrGy~-Svet-VS~------lva~Kvry~-----~r 120 (319)
T KOG0371|consen 60 CPVTVCGDVHGQ-F---HDLIELF-KIGG-LAPDTNYLFMGDYVDRGYY-SVET-VSL------LVALKVRYP-----DR 120 (319)
T ss_pred cceEEecCcchh-H---HHHHHHH-HccC-CCCCcceeeeeeecccccc-hHHH-HHH------HHHhhcccc-----ce
Confidence 348889999832 2 2233344 2222 1234789999999987421 1111 111 111112355 37
Q ss_pred EEEecCCCCC
Q 014802 364 FLFIPGPDDA 373 (418)
Q Consensus 364 ~v~vPG~~Dp 373 (418)
+-+++|||.-
T Consensus 121 vtilrGNHEs 130 (319)
T KOG0371|consen 121 VTILRGNHES 130 (319)
T ss_pred eEEecCchHH
Confidence 8889999875
No 234
>PLN00208 translation initiation factor (eIF); Provisional
Probab=22.48 E-value=3.3e+02 Score=24.28 Aligned_cols=47 Identities=4% Similarity=0.077 Sum_probs=31.5
Q ss_pred EEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEEEEE
Q 014802 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEGE 228 (418)
Q Consensus 182 vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~veG~ 228 (418)
++|.++.. ..+.|..+..+|...| .++......=++.+|++|+|+..
T Consensus 34 ~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVel~ 82 (145)
T PLN00208 34 EYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVGLR 82 (145)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEEcc
Confidence 56666664 6778888988896555 44432112346789999999843
No 235
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=21.70 E-value=3.5e+02 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=29.9
Q ss_pred EEEEEEEEc-cCCcEEEeeCCcEEEE-EeccccccceeeccCcEEEE
Q 014802 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVA 225 (418)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~tG~I~L-dls~~~~~~g~~~~g~vV~v 225 (418)
-++|.+++. ..+.|..+.++|...| .+.......=.+.+|++|+|
T Consensus 20 e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlV 66 (99)
T TIGR00523 20 EILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIV 66 (99)
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEE
Confidence 467777775 5677888988885544 44432222345679999999
No 236
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=21.39 E-value=2.1e+02 Score=28.04 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEEEEEEccC----CcEEEeeCCcEEEEE
Q 014802 180 RWVMGVISQLED----GHFYLEDLAASVEID 206 (418)
Q Consensus 180 ~~vlGml~~~~~----g~~~LED~tG~I~Ld 206 (418)
+.++|+|....+ =.|.|||.||+|..-
T Consensus 71 v~~VGivr~~e~~~t~i~y~I~D~tg~id~r 101 (265)
T KOG3108|consen 71 VSIVGIVRNIEKSATNITYEIEDGTGQIDVR 101 (265)
T ss_pred EEEEEEEEeceecCcceEEEEecCcccEEEE
Confidence 568999988643 358899999997763
No 237
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=21.30 E-value=3.9e+02 Score=30.44 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCCCccccceEEEecCCCC
Q 014802 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDD 372 (418)
Q Consensus 316 ~p~~~Vl~Gnf~s~~~~~~~~~~~~~~~~f~~La~~l~~~p~l~~~~~~v~vPG~~D 372 (418)
.|..|||.|-- .|+. ...+.+-+....+++++.+-|.+....++||+|.-+=
T Consensus 567 ~P~~~IFaGKA--aP~y---~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~V 618 (798)
T PRK14985 567 VPRVFLFGAKA--APGY---YLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCV 618 (798)
T ss_pred CCeEEEEeecC--CCCc---HHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCCCh
Confidence 79999999963 2322 1225555666779999988999999999999998654
No 238
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=20.73 E-value=3.5e+02 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=14.2
Q ss_pred HHHHHHhcCCCcEEEEEccc
Q 014802 274 LADLEKRAANDMFVILSDIW 293 (418)
Q Consensus 274 l~~~e~~~~~~~~v~lSDv~ 293 (418)
.+.+......+.++||+|+.
T Consensus 36 ~~~~~~~l~Pd~V~fLGDLf 55 (193)
T cd08164 36 VSMMQFWLKPDAVVVLGDLF 55 (193)
T ss_pred HHHHHHhcCCCEEEEecccc
Confidence 44445556788899999984
No 239
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=20.60 E-value=92 Score=32.76 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=34.5
Q ss_pred CccCHHHHHHHHHhhccCCCChH-HHHHHHHHHHhhccC--CCcccccH
Q 014802 18 YGLRMDALDEILSFVNRFPDAED-EAIDLLLDQFEHESS--LKSSIIDK 63 (418)
Q Consensus 18 l~l~~dAl~~l~~~~~~~~~~~~-~~l~~ll~~i~k~~~--~~~~~vd~ 63 (418)
|+|++|.|+.++++..+.+|..| +...++++++...|+ .+...+++
T Consensus 1 l~i~~~~L~~~as~~fk~~G~l~R~~~ik~L~e~~~~~~~~er~~~i~~ 49 (525)
T KOG3818|consen 1 LSIKSDRLRELASFVFKLCGHLWRSEAIKLLVELALDWKKEERKKWINK 49 (525)
T ss_pred CCcchHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHhhhHHHHhhhhHHH
Confidence 57899999999999999999865 567777777777764 33444443
No 240
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=20.26 E-value=1.3e+02 Score=21.55 Aligned_cols=34 Identities=6% Similarity=0.308 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHhhcc
Q 014802 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNR 34 (418)
Q Consensus 1 m~~~~~~~I~~~Fk~~Gl~l~~dAl~~l~~~~~~ 34 (418)
|.+.++.+|-...+.+|-++.++.+..|.+.+.+
T Consensus 11 lP~~l~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 11 LPEELKEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp CEHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999886654
No 241
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=20.21 E-value=4.1e+02 Score=20.48 Aligned_cols=31 Identities=13% Similarity=0.341 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCC-ccCHHHHHHHHHhhcc
Q 014802 4 QTRKKIQKKMKIRGY-GLRMDALDEILSFVNR 34 (418)
Q Consensus 4 ~~~~~I~~~Fk~~Gl-~l~~dAl~~l~~~~~~ 34 (418)
-+|..|.+.++..|+ ..+++|++.|.+.+.+
T Consensus 7 ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~~ 38 (77)
T smart00576 7 LLRIAVAQILESAGFDSFQESALETLTDILQS 38 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHHHH
Confidence 367778888999997 5699999999875554
Done!