BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014803
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 210/330 (63%), Gaps = 37/330 (11%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++MFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
DWD LPP+KIK +A KP DWD+R IDDP KPE +WD+
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315
G G W+P++I NP+YKG W P IDNPE+ D ++Y +G+
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL 272
Query: 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
++WQVK+G+++DN LI +D AYA++ E
Sbjct: 273 DLWQVKSGTIFDNFLITNDEAYAEEFGNET 302
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 200/382 (52%), Gaps = 63/382 (16%)
Query: 14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGD-------PDDKGIQT 66
+ E++F + FD G S W++S K+ + K+ GKW D P DKG+
Sbjct: 21 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD-GKWEVDEMKETKLPGDKGLVL 79
Query: 67 HTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGD 123
+ A+H+AISAK+ + F + L+VQY + F+ IECGG Y+KLLS +N +F
Sbjct: 80 MSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDK 139
Query: 124 APYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFI 173
PY++MFGPD CG K LH I ++ + +E + TDK TH YT I
Sbjct: 140 TPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLI 198
Query: 174 LRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKP 231
L PD S+ IL+D +SG++ D + P R+I+ +KP DWD+R I DP+AVKP
Sbjct: 199 LNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKP 258
Query: 232 EGY--------------------DSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA-- 269
+ + D P+ +PDP A+KP++WDED DG W+ P+I NP
Sbjct: 259 DDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCE 318
Query: 270 -----------------YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKY 312
YKG W+P I NPNY+G WK I NP+F +D + + + P
Sbjct: 319 SAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSA 378
Query: 313 VGIEVWQVKAGSVYDNILICDD 334
+G+E+W + + +DN ++C D
Sbjct: 379 IGLELWSMTSDIFFDNFIVCGD 400
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 135/189 (71%), Gaps = 6/189 (3%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++MFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPR 204
DWD LPP+
Sbjct: 184 DDWDFLPPK 192
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 301 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
D ++Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Query: 19 IFFEERF--DDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
++F+E+F DGW SRW+ S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 12 VYFKEQFLDGDGWTSRWIESKHKSDFGK---FVLSSGKFYGDEEKDKGLQTSQDARFYAL 68
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SA FSNK +TLVVQ++++ EQ+I+CGGGY+KL ++Q GD+ Y++MFGPDIC
Sbjct: 69 SASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDIC 128
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ C+ D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 129 GPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 188
Query: 196 TDWDILP 202
DWD LP
Sbjct: 189 DDWDFLP 195
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 301 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
DP +Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 134/189 (70%), Gaps = 6/189 (3%)
Query: 19 IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
I+F+E+F DG W +RWV S K GK F ++GK++GD + DKG+QT DAR YA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
SAK FSNK +TLVVQ++++ EQ+I+CGGGY+KL + ++QK GD+ Y++ FGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHGDSEYNIXFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
G K +HVI +Y+G+N I K++ + D+ TH YT I+RPD +Y + IDN + +SGS+
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPR 204
DWD LPP+
Sbjct: 184 DDWDFLPPK 192
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 301 DPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
D ++Y +G+++WQVK+G+++DN LI +D AYA++ E
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNET 243
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 204 RKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPP 263
+KIK +A KP DWD+R IDDP KPE +D P+ IPDP AKKP++WDE+ DG W+PP
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 264 KIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298
I NP YKG W+P++I NP+YKG W P IDNPE+
Sbjct: 61 VIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY 95
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 204 RKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPP 263
+KIK +A KP DWD+R IDDP KPE +D P+ IPDP AKKP++WDE+ DG W+PP
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 264 KIPNPAYKGPWRPK 277
I NP YKG W+P+
Sbjct: 61 VIQNPEYKGEWKPR 74
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 238 PKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKG 272
P+ IPDP AKKP++WDE+ DG W+PP I NP YKG
Sbjct: 3 PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKG 37
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 38
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 238 PKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA 269
PK IPDP A+KPD+W+ED DG W+ P+I NPA
Sbjct: 7 PKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 230 KPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289
+P+ D + E + KK ++W + + P +P + G R + +KGKWK
Sbjct: 119 EPQAVDFL--ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWK 176
Query: 290 IPY 292
P+
Sbjct: 177 TPF 179
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 230 KPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289
+P+ D + E + KK ++W + + P +P + G R + +KGKWK
Sbjct: 119 EPQAVDFL--ECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWK 176
Query: 290 IPY 292
P+
Sbjct: 177 TPF 179
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 94 SIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNY 153
+IR E+ E + +L A V+++ + Y ++ PD+ G QK+ L I Y
Sbjct: 101 TIRMEEIAEKARNFDELRLAVVDEE---SEITYFRVYEPDMMGEQKEELPEIAGILSDEY 157
Query: 154 PIKKELEC 161
I K+ E
Sbjct: 158 VITKQTEI 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,937,043
Number of Sequences: 62578
Number of extensions: 624097
Number of successful extensions: 1329
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 29
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)