Query 014803
Match_columns 418
No_of_seqs 245 out of 761
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 5E-139 1E-143 1021.4 28.8 357 5-364 7-367 (406)
2 PF00262 Calreticulin: Calreti 100.0 1E-121 3E-126 922.1 14.3 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 2E-108 4E-113 841.8 24.5 333 21-355 43-439 (558)
4 KOG0674 Calreticulin [Posttran 99.9 9.5E-26 2.1E-30 222.9 6.4 156 139-321 170-351 (406)
5 PF00262 Calreticulin: Calreti 99.9 9E-24 2E-28 214.0 -0.2 98 192-289 226-339 (367)
6 KOG0675 Calnexin [Posttranslat 99.8 1.4E-20 3E-25 195.1 8.6 107 191-298 271-394 (558)
7 PF06439 DUF1080: Domain of Un 63.8 84 0.0018 28.0 10.1 138 24-191 5-152 (185)
8 PLN03161 Probable xyloglucan e 42.1 4E+02 0.0087 27.3 13.1 25 165-190 141-165 (291)
9 PF07210 DUF1416: Protein of u 40.1 36 0.00077 29.0 3.4 29 85-114 4-32 (85)
10 PF10262 Rdx: Rdx family; Int 30.2 52 0.0011 26.3 2.8 22 170-191 35-56 (76)
11 PF07691 PA14: PA14 domain; I 26.8 54 0.0012 27.9 2.5 27 166-192 58-84 (145)
12 KOG1029 Endocytic adaptor prot 26.5 1.3E+02 0.0028 35.1 5.8 12 162-173 227-238 (1118)
13 KOG0163 Myosin class VI heavy 26.1 84 0.0018 36.5 4.4 9 17-25 348-356 (1259)
14 PF11025 GP40: Glycoprotein GP 25.1 2.1E+02 0.0045 26.8 6.0 72 100-192 5-76 (165)
15 PF02747 PCNA_C: Proliferating 21.6 94 0.002 27.2 3.0 21 85-112 105-125 (128)
16 PF10106 DUF2345: Uncharacteri 21.0 74 0.0016 29.1 2.4 20 95-114 113-132 (155)
17 PF02973 Sialidase: Sialidase, 20.5 4.9E+02 0.011 25.1 7.8 106 71-193 18-132 (190)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-139 Score=1021.40 Aligned_cols=357 Identities=53% Similarity=1.048 Sum_probs=346.6
Q ss_pred HHHHHHhhhccceeeeeecccC--CCcCCCeeecccccCCCCCCcEEeecccccCCCC-CcceeecccccceeeccCCCC
Q 014803 5 LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPE 81 (418)
Q Consensus 5 ~~~~~~~~~~~~~~v~F~E~F~--~~w~~rWv~S~~~k~~~~~G~~~~~~Gk~~g~~~-dkGL~t~~~ak~yaIsa~l~~ 81 (418)
+++||+++++++|.|||.|.|. ++|++|||+|++++. .+|.|.+++|+|+|+++ |+||||++++|||||||+|++
T Consensus 7 ~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~ 84 (406)
T KOG0674|consen 7 VLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKP 84 (406)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeeccccc
Confidence 5666667778889999999995 579999999999964 68999999999999998 999999999999999999999
Q ss_pred CCCCCCceEEEEEEeeecceeccCceEEEccccccccccCCCCCeeEEEccCccCCCCceEEEEEeeCCCccccccCCcc
Q 014803 82 FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELEC 161 (418)
Q Consensus 82 f~~~~k~LVvQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~~~~~~~~kk~~~~ 161 (418)
|+|++|||||||+|||+|+|+|||||||||++++||.+|+++|||.|||||||||++|+|||+||+|+|+||+|++.++|
T Consensus 85 FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~C 164 (406)
T KOG0674|consen 85 FSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRC 164 (406)
T ss_pred ccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceEEEEEcCCCceeEEeCceeecCCCCCCCCCCCCCcccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 014803 162 ETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEI 241 (418)
Q Consensus 162 ~~D~~tHlYTLil~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~DP~d~KP~DWdd~~~I~Dp~a~KPedWD~~p~~I 241 (418)
++|++|||||||||||+||+|+|||+.+.+|||.+||+++||++|.||.++||+|||++++|+||+++||++|+ .|++|
T Consensus 165 k~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~pehi 243 (406)
T KOG0674|consen 165 KDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-KPEHI 243 (406)
T ss_pred ccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCCCcCcccccCcceEEEeEeeee
Q 014803 242 PDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVK 321 (418)
Q Consensus 242 pDP~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ElWq~~ 321 (418)
|||+|+||+|||+++||+|+||||+||.|+|.|+|++|+||+|||.|.+|+|+||.|.+++++|.+.+|++|||+||||+
T Consensus 244 pDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVK 323 (406)
T KOG0674|consen 244 PDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVK 323 (406)
T ss_pred CCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeeeecCCHHHHHHHHHHhhcc-chHHHhhhHHHHHHHH
Q 014803 322 AGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAEKVRK 364 (418)
Q Consensus 322 ~g~~FDNili~dd~~~A~~~~~~t~~~-~~~Ek~~~~~~ek~~~ 364 (418)
||+||||||||||+++|+.++++||+. +.+|++|+++++++.+
T Consensus 324 SgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~qr 367 (406)
T KOG0674|consen 324 SGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQR 367 (406)
T ss_pred cceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhcc
Confidence 999999999999999999999999998 9999999998775553
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.4e-121 Score=922.12 Aligned_cols=312 Identities=52% Similarity=1.013 Sum_probs=237.2
Q ss_pred eeeecccCCC--cCCCeeecccccCC---CCCCcEEeecccccC-CCCCcceeecccccceeeccCC-CCCCCCCCceEE
Q 014803 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (418)
Q Consensus 19 v~F~E~F~~~--w~~rWv~S~~~k~~---~~~G~~~~~~Gk~~g-~~~dkGL~t~~~ak~yaIsa~l-~~f~~~~k~LVv 91 (418)
|||+|+|+++ |.+|||+|++++++ .+.|+|.+++|++++ .++|+||||+++|||||||++| +||++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999975 99999999999874 568999999997775 5669999999999999999999 589999999999
Q ss_pred EEEEeeecceeccCceEEEcccccccc-ccCCCCCeeEEEccCccCCCCceEEEEEeeC-------CCccccccCCcccC
Q 014803 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-------GQNYPIKKELECET 163 (418)
Q Consensus 92 QYeVK~e~~idCGGaYIKLl~~~~d~~-~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~~-------~~~~~~kk~~~~~~ 163 (418)
|||||||++|+|||||||||++..++. +|+++|||+||||||+|| .++||||||||+ +++|+.++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999998887 999999999999999999 566799999774 34667777888999
Q ss_pred CCccceEEEEEcCCCceeEEeCceeecCCCCCCCCC--CCCCcccCCCCCCCCCCcccccccCCCCCCCCCCCC------
Q 014803 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (418)
Q Consensus 164 D~~tHlYTLil~pd~tyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~DP~d~KP~DWdd~~~I~Dp~a~KPedWD------ 235 (418)
|++||||||||||||||+|+|||+++.+|||.+||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCcCCCCC
Q 014803 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (418)
Q Consensus 236 --------------~~p~~IpDP~a~kP~dWd~~~dG~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (418)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 679999999999999999999999999999999 999999999999999
Q ss_pred CCCCCcccccCCCCCCCCcCcccccCcceEEEeEeeeecCceeeeeee
Q 014803 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (418)
Q Consensus 284 YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ElWq~~~g~~FDNili 331 (418)
|||+|+|++|+||+|++|.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-108 Score=841.82 Aligned_cols=333 Identities=41% Similarity=0.781 Sum_probs=298.5
Q ss_pred eecccCCC--cCCCeeecccccCCC------CCCcEEeecccccCCCCCcceeecccccceeeccCC-CCCCCCCCceEE
Q 014803 21 FEERFDDG--WRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (418)
Q Consensus 21 F~E~F~~~--w~~rWv~S~~~k~~~------~~G~~~~~~Gk~~g~~~dkGL~t~~~ak~yaIsa~l-~~f~~~~k~LVv 91 (418)
|.++|+.+ |. |||.|.++|++. +.|.|.+..++-.+.++|+||++++.|||||||+.| .||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66678764 45 899999988632 247788777666677889999999999999999999 789999999999
Q ss_pred EEEEeeecceeccCceEEEccc---cccccccCCCCCeeEEEccCccCCCCceEEEEEeeCC-Cc-----cccccCCc--
Q 014803 92 QYSIRFEQDIECGGGYIKLLSA---YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-QN-----YPIKKELE-- 160 (418)
Q Consensus 92 QYeVK~e~~idCGGaYIKLl~~---~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~~~-~~-----~~~kk~~~-- 160 (418)
|||||+|+|++|||||||||++ ..++++|+++|||+||||||+|| .+++|||||+|++ .+ ++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 9999999999999999999999 37889999999999999999999 9999999999963 33 44455554
Q ss_pred --ccCCCccceEEEEEcCCCceeEEeCceeecCCCCCCCC--CCCCCcccCCCCCCCCCCcccccccCCCCCCCCCCCCC
Q 014803 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDW--DILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (418)
Q Consensus 161 --~~~D~~tHlYTLil~pd~tyeI~ID~~~~~~Gsl~~Dw--d~~pp~~I~DP~d~KP~DWdd~~~I~Dp~a~KPedWD~ 236 (418)
..+|++||||||||+|||||+|||||++|..|||.+|+ .++||++|+||++.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 56899999999999999999999999999999999999 48999999999999999999999999999999999984
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCC
Q 014803 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLW-------------------KPPKIPNPAYKGPWRPK 277 (418)
Q Consensus 237 --------------------~p~~IpDP~a~kP~dWd~~~dG~W-------------------~~p~I~NP~ykG~W~p~ 277 (418)
+|.+|+||+|+||+|||+++||+| +||||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 588999999999999999877654 55567778888999999
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCcCcccccCcceEEEeEeeeecCceeeeeeecCCHHHHHHHHHHhhcc-chHHHhh
Q 014803 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEG 355 (418)
Q Consensus 278 ~I~NP~YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ElWq~~~g~~FDNili~dd~~~A~~~~~~t~~~-~~~Ek~~ 355 (418)
||.||+|+|+|+||+|+||+|+++.+++.+.+|.+||+|+|+|+++++|||||||+|++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 4444443
No 4
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.5e-26 Score=222.88 Aligned_cols=156 Identities=33% Similarity=0.599 Sum_probs=125.2
Q ss_pred CceEEEEEeeCCCccccccC-CcccCCCccceEEEEEcCCCceeEEeCceeecCCCCCCCCCCCCCcccCCCCCCCCCCc
Q 014803 139 KKHLHVILSYQGQNYPIKKE-LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADW 217 (418)
Q Consensus 139 ~~kvH~I~~~~~~~~~~kk~-~~~~~D~~tHlYTLil~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~DP~d~KP~DW 217 (418)
|+-..||||-.. +|.++-+ ....+..+..-+.|.-..- ....+.++|+|||. ...|+||+|+||+||
T Consensus 170 tHlYTlIlRPd~-TYeVkIDn~~~esGsle~DWdll~~KK---------ikdP~a~KPedWDe--r~~I~DpeD~Kp~dw 237 (406)
T KOG0674|consen 170 THLYTLILRPDA-TYEVKIDNQQVESGSLEDDWDLLPPKK---------IKDPDAKKPEDWDE--REYIPDPEDKKPQDW 237 (406)
T ss_pred ceeEEEEecCCC-eeEEEEcccccccCccccccccccccc---------cCCccccCcccchh--hccCCCccccCcccc
Confidence 455556777644 3344332 2345556655555543211 01345679999998 589999999999999
Q ss_pred ccccccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC----
Q 014803 218 DDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGK---- 287 (418)
Q Consensus 218 dd~~~I~Dp~a~KPedWD~------~p~~IpDP~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~---- 287 (418)
+-+++||||+|+||+|||+ +++|||+|.++ |+|+|.+|.||+|||.|.+|+|.||.|...
T Consensus 238 e~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly 307 (406)
T KOG0674|consen 238 EKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELY 307 (406)
T ss_pred ccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccccCccccceeeccccCCCcCCCCccee
Confidence 9999999999999999997 59999999999 999999999999999999999999999876
Q ss_pred ------------Cc---ccccCCCCCCCCcCcccccCcceEEEeEeeee
Q 014803 288 ------------WK---IPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVK 321 (418)
Q Consensus 288 ------------W~---~~~I~NP~y~~d~~~~~~~~i~~iG~ElWq~~ 321 (418)
|+ ..+++|...++|+++ +..+|-|+|...
T Consensus 308 ~~~ni~~lgldLWQVKSgtIFDN~LitdD~ey-----A~k~~~eTwg~~ 351 (406)
T KOG0674|consen 308 HYENIGVLGLDLWQVKSGTIFDNFLITDDEEY-----AEKFANETWGKT 351 (406)
T ss_pred eecccceeeeeEEEeecceeecceEecCCHHH-----HHHHHHhhhccc
Confidence 75 789999999999998 778899999853
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.87 E-value=9e-24 Score=213.97 Aligned_cols=98 Identities=44% Similarity=0.828 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCCccc--ccccCCCCCCCCCCCCC------CCCCCCCCCCCCC--------CCCCCC
Q 014803 192 GSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEGYDS------IPKEIPDPKAKKP--------DNWDED 255 (418)
Q Consensus 192 Gsl~~Dwd~~pp~~I~DP~d~KP~DWdd--~~~I~Dp~a~KPedWD~------~p~~IpDP~a~kP--------~dWd~~ 255 (418)
..+++|||...|++|+||+++||++|++ +++|+||+|+||+|||+ ++++|+||.|..+ ..=|..
T Consensus 226 ~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~ 305 (367)
T PF00262_consen 226 AKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPN 305 (367)
T ss_dssp TT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT
T ss_pred ccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCcc
Confidence 3455666655566666666666666665 57999999999999997 5899999988872 222668
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCc
Q 014803 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWK 289 (418)
Q Consensus 256 ~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~ 289 (418)
+.|+|+||||+||+|+|+|+|++|+||+|...=.
T Consensus 306 YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~ 339 (367)
T PF00262_consen 306 YKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPN 339 (367)
T ss_dssp --SS----EEE-TT---S----EEE-TT--SSTT
T ss_pred ccCCccccccCCccccccccccccCCCcccCCCC
Confidence 8899999999999999999999999999998743
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-20 Score=195.12 Aligned_cols=107 Identities=36% Similarity=0.644 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCcccc--cccCCCCCCCCCCCCC------CCCCCCCCCCCCCC---------CCC
Q 014803 191 SGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEGYDS------IPKEIPDPKAKKPD---------NWD 253 (418)
Q Consensus 191 ~Gsl~~Dwd~~pp~~I~DP~d~KP~DWdd~--~~I~Dp~a~KPedWD~------~p~~IpDP~a~kP~---------dWd 253 (418)
+..+|+|||...|.+|+|++++||++|.+. ++|+||+|+||+|||+ ++++|-||.|++-. .=|
T Consensus 271 nAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~N 350 (558)
T KOG0675|consen 271 NAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINN 350 (558)
T ss_pred ccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCC
Confidence 456899999999999999999999999985 5999999999999997 58888899887532 336
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCC
Q 014803 254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298 (418)
Q Consensus 254 ~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~~~~I~NP~y 298 (418)
..+.|.|.+|||.||+|+|.|+||.|+||+|...=+| ..-+|-|
T Consensus 351 P~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p-~~~~pIs 394 (558)
T KOG0675|consen 351 PNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKP-FTLTPIS 394 (558)
T ss_pred CccCCCCccccccCccccCccccccCCCcccccccCc-ccccchh
Confidence 7888999999999999999999999999999887333 2334443
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=63.79 E-value=84 Score=27.96 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=63.2
Q ss_pred ccCCCcCCCeeecccccCCCCCCcEEeeccccc---CCCCCcceeecccccceeeccCCCCCCCCCCceEEEEEEeeecc
Q 014803 24 RFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH---GDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQD 100 (418)
Q Consensus 24 ~F~~~w~~rWv~S~~~k~~~~~G~~~~~~Gk~~---g~~~dkGL~t~~~ak~yaIsa~l~~f~~~~k~LVvQYeVK~e~~ 100 (418)
=|+..-.+.|...... ...+.|.+..|... ......|++++ .+ .| ++++|+.++|+..+
T Consensus 5 lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~---------~~--~~----~df~l~~d~k~~~~ 66 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYT---------DK--KF----SDFELEVDFKITPG 66 (185)
T ss_dssp SS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEE---------SS--EB----SSEEEEEEEEE-TT
T ss_pred eECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEE---------CC--cc----ccEEEEEEEEECCC
Confidence 4665455788776543 12466766666544 11112222222 11 22 55899999998332
Q ss_pred eeccCceEEEccccccccccCCCCCeeEEEccCccCCCCceEEEEEee-CCCcc-----cccc-CCcccCCCccceEEEE
Q 014803 101 IECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSY-QGQNY-----PIKK-ELECETDKLTHFYTFI 173 (418)
Q Consensus 101 idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~-~~~~~-----~~kk-~~~~~~D~~tHlYTLi 173 (418)
- .+|=|+..-+ .........-|++=..++.++. .+.+ .+..+ .... ......-..-|=++++
T Consensus 67 ~-~sGi~~r~~~---~~~~~~~~~gy~~~i~~~~~~~-------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 67 G-NSGIFFRAQS---PGDGQDWNNGYEFQIDNSGGGT-------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp --EEEEEEEESS---ECCSSGGGTSEEEEEE-TTTCS-------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred C-CeEEEEEecc---ccCCCCcceEEEEEEECCCCcc-------CCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 1 3343333321 1111222244777777777650 0001 12221 0111 1112223345555666
Q ss_pred EcCCCceeEEeCceeecC
Q 014803 174 LRPDASYSILIDNRERDS 191 (418)
Q Consensus 174 l~pd~tyeI~ID~~~~~~ 191 (418)
++ .+++.|.|||+.|..
T Consensus 136 ~~-g~~i~v~vnG~~v~~ 152 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVAD 152 (185)
T ss_dssp EE-TTEEEEEETTEEEEE
T ss_pred EE-CCEEEEEECCEEEEE
Confidence 65 778999999998754
No 8
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=42.08 E-value=4e+02 Score=27.34 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.4
Q ss_pred CccceEEEEEcCCCceeEEeCceeec
Q 014803 165 KLTHFYTFILRPDASYSILIDNRERD 190 (418)
Q Consensus 165 ~~tHlYTLil~pd~tyeI~ID~~~~~ 190 (418)
.--|.|++.-.|+ .-..+|||+++.
T Consensus 141 ~dFHtYsI~Wtp~-~I~wyVDG~~iR 165 (291)
T PLN03161 141 ADFHNYTIHWNPS-EVVWYVDGTPIR 165 (291)
T ss_pred cCcEEEEEEEchh-hEEEEECCEEEE
Confidence 3459999999876 467899999886
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=40.07 E-value=36 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.3
Q ss_pred CCCceEEEEEEeeecceeccCceEEEcccc
Q 014803 85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (418)
Q Consensus 85 ~~k~LVvQYeVK~e~~idCGGaYIKLl~~~ 114 (418)
-.|..|||=.|+ ..+--.||||+.||...
T Consensus 4 ~~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 4 VEKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred ccceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 357899999999 78888999999999873
No 10
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=30.24 E-value=52 Score=26.31 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=17.1
Q ss_pred EEEEEcCCCceeEEeCceeecC
Q 014803 170 YTFILRPDASYSILIDNRERDS 191 (418)
Q Consensus 170 YTLil~pd~tyeI~ID~~~~~~ 191 (418)
.+|+.-..+.|||.+||+.|-|
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 4667777999999999998864
No 11
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=26.78 E-value=54 Score=27.94 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCceeEEeCceeecCC
Q 014803 166 LTHFYTFILRPDASYSILIDNRERDSG 192 (418)
Q Consensus 166 ~tHlYTLil~pd~tyeI~ID~~~~~~G 192 (418)
.+-.|||.+..|+.+++.|||+.+...
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEEC
T ss_pred cCceEEEEEEecccEEEEECCEEEEcC
Confidence 345699999999999999999987543
No 12
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.51 E-value=1.3e+02 Score=35.13 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=7.7
Q ss_pred cCCCccceEEEE
Q 014803 162 ETDKLTHFYTFI 173 (418)
Q Consensus 162 ~~D~~tHlYTLi 173 (418)
...+|.|++||-
T Consensus 227 pq~~LA~IW~Ls 238 (1118)
T KOG1029|consen 227 PQNQLAHIWTLS 238 (1118)
T ss_pred chhhHhhheeee
Confidence 455677777773
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=26.13 E-value=84 Score=36.54 Aligned_cols=9 Identities=44% Similarity=0.349 Sum_probs=3.8
Q ss_pred eeeeeeccc
Q 014803 17 SEIFFEERF 25 (418)
Q Consensus 17 ~~v~F~E~F 25 (418)
|.|-|.|.-
T Consensus 348 GNieFEE~~ 356 (1259)
T KOG0163|consen 348 GNIEFEEIP 356 (1259)
T ss_pred cccchhccc
Confidence 344444443
No 14
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=25.14 E-value=2.1e+02 Score=26.76 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=39.3
Q ss_pred ceeccCceEEEccccccccccCCCCCeeEEEccCccCCCCceEEEEEeeCCCccccccCCcccCCCccceEEEEEcCCCc
Q 014803 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179 (418)
Q Consensus 100 ~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~~~~~~~~kk~~~~~~D~~tHlYTLil~pd~t 179 (418)
.-+||-.||--|....-...+.-. -|+|...|.+- .-...+++.....+.+ |+- +.|+|
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~------------------~t~PaPrYISGev~~V-tFe-ksd~T 63 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKD------------------QTDPAPRYISGEVKSV-TFE-KSDST 63 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecC-CEEEEEccccC------------------CCCCCCceeecceEEE-EEe-ccCCe
Confidence 457999999887765222222111 15555555442 1122334443333322 333 36999
Q ss_pred eeEEeCceeecCC
Q 014803 180 YSILIDNRERDSG 192 (418)
Q Consensus 180 yeI~ID~~~~~~G 192 (418)
..|+|||++..+-
T Consensus 64 vkIkvd~kefstl 76 (165)
T PF11025_consen 64 VKIKVDGKEFSTL 76 (165)
T ss_pred EEEEECCeEcccc
Confidence 9999999987643
No 15
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=21.58 E-value=94 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=17.6
Q ss_pred CCCceEEEEEEeeecceeccCceEEEcc
Q 014803 85 KNRTLVVQYSIRFEQDIECGGGYIKLLS 112 (418)
Q Consensus 85 ~~k~LVvQYeVK~e~~idCGGaYIKLl~ 112 (418)
.+.+|.|+|++ .+||+|+++=
T Consensus 105 ~~~Pl~l~f~~-------~~~g~l~f~L 125 (128)
T PF02747_consen 105 EDMPLKLEFEL-------ADGGSLKFYL 125 (128)
T ss_dssp TTSEEEEEEEE-------TTTEEEEEEE
T ss_pred CCCCEEEEEEe-------CCCeEEEEEE
Confidence 47899999997 4789999874
No 16
>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.
Probab=20.96 E-value=74 Score=29.14 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=14.5
Q ss_pred EeeecceeccCceEEEcccc
Q 014803 95 IRFEQDIECGGGYIKLLSAY 114 (418)
Q Consensus 95 VK~e~~idCGGaYIKLl~~~ 114 (418)
-|-+=-|.|||+||+|=...
T Consensus 113 A~~~I~l~~ggs~i~l~gg~ 132 (155)
T PF10106_consen 113 AKKEITLNAGGSYIRLSGGG 132 (155)
T ss_pred ecCcEEEecCCcEEEEeCCc
Confidence 44444588999999986553
No 17
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=20.55 E-value=4.9e+02 Score=25.09 Aligned_cols=106 Identities=16% Similarity=0.293 Sum_probs=63.0
Q ss_pred cceeeccCCCCC-CCCCCceEEEEEEeeecceeccCceEEEccccccccccCCCCCeeEEE-ccCccCCCCceEEEEEee
Q 014803 71 RHYAISAKIPEF-SNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMF-GPDICGTQKKHLHVILSY 148 (418)
Q Consensus 71 k~yaIsa~l~~f-~~~~k~LVvQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMF-GPD~CG~~~~kvH~I~~~ 148 (418)
..+-||..+..+ ....-|++|-|..-...++-| ||+-.-+... .-|--|+ -+.+|| +-+|-
T Consensus 18 ~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~----n~YF~lyv~~~~~G-------~E~R~ 80 (190)
T PF02973_consen 18 QRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKG----NEYFSLYVSNNKLG-------FELRD 80 (190)
T ss_dssp CCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTT----SEEEEEEEETTEEE-------EEEEE
T ss_pred CcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCc----cceEEEEEECCEEE-------EEEec
Confidence 346777776532 445579999999755556655 7765322211 1466665 222554 56676
Q ss_pred C-C-CccccccCCc----ccCCCccceEEEEEc-CCCceeEEeCceeecCCC
Q 014803 149 Q-G-QNYPIKKELE----CETDKLTHFYTFILR-PDASYSILIDNRERDSGS 193 (418)
Q Consensus 149 ~-~-~~~~~kk~~~----~~~D~~tHlYTLil~-pd~tyeI~ID~~~~~~Gs 193 (418)
. + .++..-.+.. ...+...|.-+|... |+..|.+++||+.+..-+
T Consensus 81 ~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~ 132 (190)
T PF02973_consen 81 TKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLS 132 (190)
T ss_dssp TTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred CCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEec
Confidence 4 2 3444434433 345667888999887 899999999997776443
Done!