Your job contains 1 sequence.
>014805
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG
LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG
AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM
GSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHIL
SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQA
ICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSP
DASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014805
(418 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 920 2.4e-92 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 671 5.8e-66 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 523 2.8e-50 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 498 1.2e-47 1
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 490 8.8e-47 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 484 3.8e-46 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 430 2.0e-40 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 411 2.1e-38 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 251 3.6e-21 1
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 148 1.1e-07 1
TAIR|locus:2013758 - symbol:AT1G29560 species:3702 "Arabi... 142 1.6e-06 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 137 2.0e-06 1
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 88 2.6e-05 3
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 86 4.3e-05 3
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 88 5.1e-05 3
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 118 6.6e-05 1
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 83 9.2e-05 3
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 94 0.00012 2
ZFIN|ZDB-GENE-030131-2391 - symbol:zfp36l1b "zinc finger ... 121 0.00015 1
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 87 0.00017 3
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 113 0.00019 1
SGD|S000005975 - symbol:LEE1 "Zinc-finger protein of unkn... 118 0.00024 1
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 113 0.00034 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 113 0.00034 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 113 0.00034 1
UNIPROTKB|Q9PTI4 - symbol:MKRN1 "Uncharacterized protein"... 95 0.00040 3
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 90 0.00072 2
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 189/413 (45%), Positives = 250/413 (60%)
Query: 1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
M D + V+S+ V+ +S+D IE+A ++K+++ GV + +PYP RPGE DC FY RTG
Sbjct: 5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60
Query: 61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
LCGYGS+CR+NHP + Q A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120
Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP-----SSLG-TALPL-- 171
GA PV FN++GLPMR EK CPYY+RTG+C+FGVACKFHHPQP ++ G ++ P
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180
Query: 172 ----TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLS-PTSIAGSNLIYSSR 226
+G + + G+ P Y I+ +P G + P +A SN +Y+ +
Sbjct: 181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPS----QGFLPPQGWAPYMAASNSMYNVK 236
Query: 227 NQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 285
NQ G+ A M + A ++ L E DQP+CR++MNTGTCKYG DCK+ HP RI+Q
Sbjct: 237 NQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPP 296
Query: 286 SNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXM 345
S I P LP+RPGQ C N+ YG CKFGP C+FDHP YP
Sbjct: 297 SLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVT 355
Query: 346 NHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKN-SDDSS 397
HQ IS T + S S+ P+ + S + + PD N ++ S+D+S
Sbjct: 356 THQRISPTPNRSDSKSLSNGKPDVKKESS----ETEKPD--NGEVQDLSEDAS 402
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 41/117 (35%), Positives = 63/117 (53%)
Query: 210 PLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTC 265
P+S T S+L+ S R+ + A +M + + L P+RP + DC++Y+ TG C
Sbjct: 4 PMSDTQHVQSSLV-SIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLC 62
Query: 266 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
YG+ C+++HP + Q A L P R GQ C + G CK+GPTC++ HP
Sbjct: 63 GYGSSCRYNHPTH-LPQDVAYYKEEL--PERIGQPDCEYFLKTGACKYGPTCKYHHP 116
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 135/319 (42%), Positives = 185/319 (57%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+ A+W++ + + G S YP R GEPDC +Y RTGLC +GS CRFNHP
Sbjct: 19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G G VS N+L P+R +
Sbjct: 76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIV 196
E C Y++R G CKFG CKF+HPQ S N + GS V S LQ
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185
Query: 197 PAPGWN--TYMGNIGPLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PER 250
P+ W+ +++ N L P+ A + ++SS G + + +N+ PER
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPER 243
Query: 251 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI 310
P QP+C++YM TG CK+G CKFHHP++R + +GLP RPG+ +C YS YGI
Sbjct: 244 PGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGI 303
Query: 311 CKFGPTCRFDHPYAGYPIN 329
CKFGP+C+FDHP + N
Sbjct: 304 CKFGPSCKFDHPMRVFTYN 322
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 102/231 (44%), Positives = 141/231 (61%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
++A+W++ + ++ + YP RPGEPDC +Y RTGLC +GS CRFNHP
Sbjct: 18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ----Y 192
E C Y++RTG CKFG CKF+HPQP +P +G S +S + S Q Y
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193
Query: 193 A------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGD-LGAGAQ 236
A G+VP GWN Y G +G +SP+ G++ Y + Q + + +G+Q
Sbjct: 194 ASLIMPQGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQ 243
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 97/289 (33%), Positives = 138/289 (47%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT 103
YP R G+P+C +Y +TG C +G C+F+HP A G R L GY L++
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKA-GIAGRVSLNM------LGYPLRSNE 134
Query: 104 --CKY---GSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFH 158
C Y CK+ N P N++ +P ++S P+ F + ++
Sbjct: 135 VDCAYFLRTGHCKFGGTCKFNHPQPQPTNMM-VPT-SGQQSYPW----SRASFIASPRWQ 188
Query: 159 HPQP-SSL---GTALPLTG-NASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSP 213
P +SL +P+ G N G +GS V PS G + N S
Sbjct: 189 DPSSYASLIMPQGVVPVQGWNPYSGQLGS-VSPS------GTGNDQNYRNLQQNETIESG 241
Query: 214 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 273
+ GS +S N G + L + PERP QP+C++YM TG CK+G CKF
Sbjct: 242 SQSQGS---FSGYNPGSSVPLGGYYALPRENV-FPERPGQPECQFYMKTGDCKFGTVCKF 297
Query: 274 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
HHP++R A + +GLP RPG+ +C Y+ YGICKFGP+C+FDHP
Sbjct: 298 HHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
Score = 206 (77.6 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 236 QMHILSASSQ---NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG 292
QM++ S + + PERP +PDC YY+ TG C++G+ C+F+HP++R A + +
Sbjct: 23 QMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-E 81
Query: 293 LPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
P R GQ C Y G CKFG TC+F HP
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHP 111
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 123/333 (36%), Positives = 162/333 (48%)
Query: 3 DNRQVKSNAVANQSADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGL 61
++R S+ + Q + IE ++WRL + GGG +P RP EPDC++Y RTG+
Sbjct: 11 ESRSDPSHEWSAQGTETGIEASMWRLGLRGG--GGG---GETFPERPDEPDCIYYLRTGV 65
Query: 62 CGYGSNCRFNHPAYAAQ--GAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
CGYGS CRFNHP A G E E PER GQP C ++++TGTCK+G++CKYHHP+
Sbjct: 66 CGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQ 125
Query: 118 RNGAG---PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGN 174
G PVS N +G P+R EK C Y+MRTG CKFG C++HHP P G P
Sbjct: 126 GGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQ 183
Query: 175 ASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRN-QGDLGA 233
S G ++ PS LQ + + + + L P S S Y +
Sbjct: 184 QQQLSAGPTMYPS--LQSQTVPSSQQYGVVLAR-PQLLPGSYVQSPYGYGQMVLPPGMVP 240
Query: 234 GAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG- 292
+ + AS +P QP M T + YG P QS S+ G
Sbjct: 241 YSGWNPYQASVSAMPSPGTQPS----MGTSSV-YGITPL--SPSAPAYQSGPSSTGVSNK 293
Query: 293 ---LPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
P RP Q C + G CKFG +CRF HP
Sbjct: 294 EQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 105/310 (33%), Positives = 153/310 (49%)
Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
GG +A +P R G+P C + RTG C +G++C+++HP G P
Sbjct: 85 GGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPL 144
Query: 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDE-KSCPYYMRTG 147
R G+ +C Y+++TG CK+GSTC+YHHP P L S
Sbjct: 145 RPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPS 204
Query: 148 SCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGN 207
S ++GV PQ LP + S G VLP G+VP GWN Y +
Sbjct: 205 SQQYGVVLA--RPQ------LLPGSYVQSPYGYGQMVLPP------GMVPYSGWNPYQAS 250
Query: 208 IGPL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYM 260
+ + SP + G++ +Y S + +G +S Q P+RP+QP+C+Y+M
Sbjct: 251 VSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFM 310
Query: 261 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 320
TG CK+G C+FHHP E A AS + +GLP RPG C++++ +GICKFGP C+FD
Sbjct: 311 RTGDCKFGTSCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFD 369
Query: 321 HPYAGYPINY 330
H ++Y
Sbjct: 370 HSLGSSSLSY 379
Score = 217 (81.4 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 73 PAY----AAQGAQYREE-LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127
PAY ++ G +E+ P+R QP+C Y+++TG CK+G++C++HHP + + +
Sbjct: 279 PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLS 338
Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH----------PQPSSLGTALPLTGN-AS 176
+GLP+R C ++ + G CKFG ACKF H P PSSL T +P+ +S
Sbjct: 339 HIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSL-TDMPVAPYPSS 397
Query: 177 LGSMGSS 183
LG++ S
Sbjct: 398 LGTLAPS 404
Score = 215 (80.7 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 245 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 304
+ PERPD+PDC YY+ TG C YG+ C+F+HP+ R P R GQ +C +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105
Query: 305 YSMYGICKFGPTCRFDHPYAG 325
+ G CKFG +C++ HP G
Sbjct: 106 FMRTGTCKFGASCKYHHPRQG 126
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 129/325 (39%), Positives = 169/325 (52%)
Query: 17 ADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA- 74
AD ++E++WRL G+ S YP RPG PDC +Y RTG+CGYG+ CR+NHP
Sbjct: 24 ADTGLQESMWRL---------GLGSDS-YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRD 73
Query: 75 YAAQGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGL 131
A+ A R + PER G+P C +YLKTGTCK+G++CK+HHPK+ G+ V NI G
Sbjct: 74 RASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGY 133
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL------ 185
P+R+ + C YY++TG CKFG+ CKFHHPQP+ GT +P AS SV
Sbjct: 134 PVREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQ 190
Query: 186 ---PSSGLQYAGIVPAPGWNTYM-GNIGP--LSP--TSIAGSNLIYSSRNQGDLGAGAQM 237
PSS L+ A + PG +YM G GP L+P I G + YS+ L GAQ
Sbjct: 191 YGGPSSSLRVARTL-LPG--SYMQGAYGPMLLTPGVVPIPGWSP-YSAPVSPALSPGAQ- 245
Query: 238 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRP 297
H + A+S +T G P I + A P RP
Sbjct: 246 HAVGATSLY--------GVTQLTSTTPSLPGVYPSLSSPTGVIQKEQA-------FPERP 290
Query: 298 GQAICSNYSMYGICKFGPTCRFDHP 322
G+ C Y G CKFG +C+F HP
Sbjct: 291 GEPECQYYLKTGDCKFGTSCKFHHP 315
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 113/302 (37%), Positives = 154/302 (50%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREEL-----PERNGQ 92
V YP R GEP C FY +TG C +G++C+F+HP A G+ L P R G
Sbjct: 81 VRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAG-GSMSHVPLNIYGYPVREGD 139
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFG 152
+C YYLKTG CK+G TCK+HHP+ P + P S P + S +
Sbjct: 140 NECSYYLKTGQCKFGITCKFHHPQ------PAGTTVPPPPA-----SAPQFYP--SVQSL 186
Query: 153 VACKFHHPQPSSLGTALPLT-GNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGP- 210
+ ++ P SSL A L G+ G+ G +L G+VP PGW+ Y + P
Sbjct: 187 MPDQYGGPS-SSLRVARTLLPGSYMQGAYGPMLLTP------GVVPIPGWSPYSAPVSPA 239
Query: 211 LSP--------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYM 260
LSP TS+ G + S+ G + + + Q PERP +P+C+YY+
Sbjct: 240 LSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYL 299
Query: 261 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 320
TG CK+G CKFHHP++R+ A + P+GLP RPG C+ Y G CKFG TC+FD
Sbjct: 300 KTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFD 359
Query: 321 HP 322
HP
Sbjct: 360 HP 361
Score = 190 (71.9 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 36 GGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA----AQGAQYREELPERNG 91
G + + +P RPGEP+C +Y +TG C +G++C+F+HP A LP R G
Sbjct: 278 GVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPG 337
Query: 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
C +Y++ G CK+GSTCK+ HP P + ++ P+
Sbjct: 338 VQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPV 379
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 118/330 (35%), Positives = 159/330 (48%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY--AA 77
+E +WRL + GGG ++ YP RP EPDC++Y RTG+CGYGS CRFNHP A
Sbjct: 29 VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86
Query: 78 QGAQYREE--LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
G E LPER G P C ++++TGTCK+G++CKYHHP+ G G PVS + LG P
Sbjct: 87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146
Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL--------PLTGNASL-GSMGS 182
+R EK C YY+RTG CKFG+ C+F+HP P ++ G P ++ ++ S
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206
Query: 183 SVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLI-YSSRNQGDLGAGAQMHILS 241
+PSS QY ++ P + T P P + ++ YS N
Sbjct: 207 QSIPSSQ-QYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNP-----------YQ 254
Query: 242 ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAI 301
AS +P QP G + + S SN P RP Q
Sbjct: 255 ASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS--SNSTSKEFPQRPDQPE 312
Query: 302 CSNYSMYGICKFGPTCRFDHPYAGYPINYG 331
C + G CKFG +CR+ HP P G
Sbjct: 313 CQYFMRTGDCKFGSSCRYHHPVDAVPPKTG 342
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 102/302 (33%), Positives = 151/302 (50%)
Query: 36 GGV-AQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
GGV +A P R G P C + RTG C +G++C+++HP G P
Sbjct: 88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147
Query: 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGS 148
R G+ +C YYL+TG CK+G TC+++HP GP P +Q + P
Sbjct: 148 RPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQ-----QPQQQQPQPQPQLQTIYP 202
Query: 149 CKFGVACKFHHPQPSSLGTALPLTGNASL-GSMGSSVLPSSGLQYAGIVPAPGWNTYMGN 207
+ PSS L LT + L GS S + G+VP GWN Y +
Sbjct: 203 TLQSQSI------PSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQAS 256
Query: 208 IGPL-SPTS--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYY 259
+ + SP + GS+ IY S G + +++S+ P+RPDQP+C+Y+
Sbjct: 257 LSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYF 316
Query: 260 MNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF 319
M TG CK+G+ C++HHP + + + +GLP RPG A C++++ +GICKFGP C+F
Sbjct: 317 MRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKF 376
Query: 320 DH 321
DH
Sbjct: 377 DH 378
Score = 220 (82.5 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 50/150 (33%), Positives = 77/150 (51%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
+E P+R QP+C Y+++TG CK+GS+C+YHHP D + + +GLP+R C +
Sbjct: 302 KEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTH 361
Query: 143 YMRTGSCKFGVACKFHHPQPSSLG--------TALPLT----GNASLGSMGSSVLPSSGL 190
+ + G CKFG ACKF H SSL T +P+ G++SL GSS SS
Sbjct: 362 FAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLS--GSSAPVSSSN 419
Query: 191 QYAGIVPAPGWNTYMGNIGPLSPTSIAGSN 220
+ P ++ + + P +G +
Sbjct: 420 EPTKEAVTPAVSSMVSGLSRPEPAETSGDS 449
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 106/301 (35%), Positives = 149/301 (49%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTG 102
YP RPGEPDC +Y +T C YGS C+FNHP AA + ++ LPER +P C +Y+KTG
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281
Query: 103 TCKYGSTCKYHHPKD---RNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
CK+G +CK+HHPKD + + + ++ GL D + P+ T + +H+
Sbjct: 282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSV-GLTSEPDATNNPHVTFTPAL-------YHN 333
Query: 160 PQ--PSSLGTA-LPL---TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYM--GNIGPL 211
+ P G P TG+ G+ P + A I A G N + N L
Sbjct: 334 SKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPE---RTAFIPQAAGVNYSLVSSNTANL 390
Query: 212 SPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 271
+ + + Y + Q LG ++SA+ P+RP Q +C YYM TG CK+G C
Sbjct: 391 NLGLVTPATSFYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERC 441
Query: 272 KFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
KFHHP +R++ Q + G P R G C Y G CK+G TC+FDHP
Sbjct: 442 KFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPP 501
Query: 325 G 325
G
Sbjct: 502 G 502
Score = 335 (123.0 bits), Expect = 4.8e-30, P = 4.8e-30
Identities = 64/145 (44%), Positives = 89/145 (61%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA--QYRE-------ELPERNGQPD 94
YP R GE DC Y +T C +G +CRF+HP + +G ++E E PER G+PD
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
C YY+KT CKYGS CK++HP++ + + LP R E C +YM+TG CKFG++
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD--SLPERPSEPMCTFYMKTGKCKFGLS 288
Query: 155 CKFHHPQ----PSS---LGTALPLT 172
CKFHHP+ PSS +G+++ LT
Sbjct: 289 CKFHHPKDIQLPSSSQDIGSSVGLT 313
Score = 247 (92.0 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 42/87 (48%), Positives = 55/87 (63%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA----GP----VSFNILGLPMRQDEK 138
P+R GQ +C YY+KTG CK+G CK+HHP DR A P V ++ G P R+
Sbjct: 418 PQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGAL 477
Query: 139 SCPYYMRTGSCKFGVACKFHHPQPSSL 165
+CPYYM+TG+CK+G CKF HP P +
Sbjct: 478 NCPYYMKTGTCKYGATCKFDHPPPGEV 504
Score = 216 (81.1 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 244 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICS 303
++ PERP +PDC YY+ T CKYG+ CKF+HP+E A S + LP RP + +C+
Sbjct: 219 NEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDS---LPERPSEPMCT 275
Query: 304 NYSMYGICKFGPTCRFDHP 322
Y G CKFG +C+F HP
Sbjct: 276 FYMKTGKCKFGLSCKFHHP 294
Score = 209 (78.6 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 37 GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
GV A+ YP RPG+ +C +Y +TG C +G C+F+HPA A Q + L
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 87 -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
P R G +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 153 (58.9 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 248 PERPDQPDCRYYMNTGTCKYGADCKFHHP----KERIAQSAASNIGPLG-LPSRPGQAIC 302
P+R + DC +YM T TCK+G C+F HP + I + + P P RPG+ C
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDC 231
Query: 303 SNYSMYGICKFGPTCRFDHP 322
Y CK+G C+F+HP
Sbjct: 232 PYYIKTQRCKYGSKCKFNHP 251
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 110/332 (33%), Positives = 164/332 (49%)
Query: 4 NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQA-SPYPARPGEPDCLFYRRTGLC 62
N + SNAV + + EE R + +G ++ + YP RPG DC FY RTG C
Sbjct: 67 NGGLDSNAVVTINQEEEEEEEDR-DGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSC 125
Query: 63 GYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+GS+C+FNHP A+ + RE+ + + G DC YY +TG CKYG TC+++H
Sbjct: 126 KFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTI 185
Query: 117 DRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTG 173
++G A N LGLP+R E CPYYMR GSCK+G CKF+HP P+++G T P G
Sbjct: 186 PKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRG 245
Query: 174 NASLGSMGSSVLPSSGLQYAGIVPAPGWNT--YMGNIGPLSPTSIAGSNLIYSSRNQGDL 231
N + S+G+ P + Q + + W++ ++ P P ++ ++ + S + +
Sbjct: 246 NNGV-SIGT-FSPKATFQAS----STSWSSPRHVNGTSPFIPVMLSQTHGVTSQNPEWN- 298
Query: 232 GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC-KFHHPKERIAQSAASNIGP 290
G Q + S S + + P Y MN + + ++ H Q A
Sbjct: 299 --GYQASVYS-SERGV----FSPSTTYLMNNSSAETSMLLSQYRH------QMPAEEF-- 343
Query: 291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
P RP Q CS Y G CKF C++ HP
Sbjct: 344 ---PERPDQPECSYYMKTGDCKFKFNCKYHHP 372
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 97/281 (34%), Positives = 127/281 (45%)
Query: 52 DCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT--CKY--- 106
DC +Y RTG C YG CRFNH G PE N G L+ G C Y
Sbjct: 163 DCKYYFRTGGCKYGETCRFNH-TIPKSGLA---SAPELNF---LGLPLRPGEVECPYYMR 215
Query: 107 GSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG 166
+CKY N P + P + + G+ F F Q SS
Sbjct: 216 NGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNG----VSIGT--FSPKATF---QASSTS 266
Query: 167 TALPLTGNASLGSMGSSVLPSSGLQYAGIVPA-PGWNTYMGNI-----GPLSPTSIAGSN 220
+ P N + S +P Q G+ P WN Y ++ G SP++ +
Sbjct: 267 WSSPRHVNGT-----SPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPST---TY 318
Query: 221 LIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI 280
L+ +S + + H + A + PERPDQP+C YYM TG CK+ +CK+HHPK R+
Sbjct: 319 LMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRL 376
Query: 281 AQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
+ + GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct: 377 PKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 251 (93.4 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 243 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 302
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 303 SNYSMYGICKFGPTCRFDH 321
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 217 (81.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
E+ PER G+P+C YYL+TG C CKYHHPK+ + P + N GLP+R + CP+
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 143 YMRTGSCKFGVACKFHH 159
Y R G C+ G CKF H
Sbjct: 64 YSRFGICRSGPTCKFDH 80
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
+P RPGEP+C +Y RTG C NC+++HP Q + LP R GQ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 100 KTGTCKYGSTCKYHH 114
+ G C+ G TCK+ H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 95 (38.5 bits), Expect = 0.00052, P = 0.00052
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
P R E C YY+RTG+C CK+HHP+
Sbjct: 7 PERPGEPECSYYLRTGNCYLKQNCKYHHPK 36
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 40 QASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR--EELPERN 90
Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP Q R + + +RN
Sbjct: 48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRN 100
>TAIR|locus:2013758 [details] [associations]
symbol:AT1G29560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003676
EMBL:AC068667 eggNOG:KOG1677 IPI:IPI00527997 RefSeq:NP_174249.2
UniGene:At.73942 ProteinModelPortal:B3H4U9 PRIDE:B3H4U9
EnsemblPlants:AT1G29560.1 GeneID:839833 KEGG:ath:AT1G29560
TAIR:At1g29560 HOGENOM:HOG000064587 OMA:WRDSESR PhylomeDB:B3H4U9
ProtClustDB:CLSN2682005 Genevestigator:B3H4U9 Uniprot:B3H4U9
Length = 572
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 45 PAR-PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT 103
P R PGE +C R C G +CR+NHP Q +ELP RN C Y+L+ G
Sbjct: 215 PVRWPGE-ECWCLR----CRNGGSCRYNHPT------QLPQELPVRNRLQICRYFLR-GY 262
Query: 104 CKYGSTCKYHHPKDRNGAGPVSFN 127
CK+GS C + H +DR+ A P+ N
Sbjct: 263 CKFGSVCGFQHIRDRDVAEPMYEN 286
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 49/197 (24%), Positives = 80/197 (40%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y G C YG+ C F H + R P R P C + G C +G+ C +
Sbjct: 103 CRTYHTAGYCVYGTRCLFVHNL-----KEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHF 156
Query: 113 HHPKDRNGAGPVSFNILGLPMRQDEK------SCPYYMRTGSCKFGVACKFHHPQPSSL- 165
H + + + P Q ++ C + G C +G C+F H P+++
Sbjct: 157 LHVEGGSESDGAEEEQTWQPPSQSQEWKPRGALCRTFSAFGFCLYGTRCRFQHGLPNTIK 216
Query: 166 G-----TALP--LTGNASLGSMGSSVL----PSSGLQYAGIVPAPGWNTYMGNIGPLSPT 214
G T+ P +T S+ + + PSS A +P+P + G I P S
Sbjct: 217 GHNANHTSWPQQMTNGGSISPISDTCTSPSPPSSSPTSA--LPSPVYPDSSGPITPPSVE 274
Query: 215 SIAGSNLIYSSRNQGDL 231
++A + +SS++ DL
Sbjct: 275 AVANNAFTFSSQHLNDL 291
Score = 116 (45.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 37/136 (27%), Positives = 48/136 (35%)
Query: 237 MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS- 295
+H L P R + P CR + G C +G C F H + A PS
Sbjct: 121 VHNLKEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ 179
Query: 296 ----RPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAIS 351
+P A+C +S +G C +G CRF H G P N +IS
Sbjct: 180 SQEWKPRGALCRTFSAFGFCLYGTRCRFQH---GLPNTIKGHNANHTSWPQQMTNGGSIS 236
Query: 352 ATHSIETSPDASSKIP 367
TSP S P
Sbjct: 237 PISDTCTSPSPPSSSP 252
Score = 61 (26.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 134 RQDEKSCPYYMRTGSCKFGVACKFHH 159
R + C Y TG+CK+ C+F H
Sbjct: 59 RYKTELCSRYAETGTCKYAERCQFAH 84
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 88 (36.0 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 113 HHPKDRNGAG 122
H K AG
Sbjct: 54 DHTKPPAAAG 63
Score = 63 (27.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 256 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 282
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 328 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 357
Score = 60 (26.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 168 EQQLCPY-AAAGECRFGDACVYLH 190
Score = 49 (22.3 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 298 GQAICSNYSM-YGICKFGPTCRFDHPY 323
G+ C + G C FG C + H Y
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAY 350
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 86 (35.3 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 23/67 (34%), Positives = 28/67 (41%)
Query: 56 YRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
Y G+C GS C F+H +L C YY K G C YG+ C+Y H
Sbjct: 10 YFMHGVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRYDHT 56
Query: 116 KDRNGAG 122
K AG
Sbjct: 57 KPPAAAG 63
Score = 74 (31.1 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 53 CLFYRRTGLCGYGSNCRFNH--PAYAAQGA 80
C +Y++ G C YG+ CR++H P AA GA
Sbjct: 37 CKYYQK-GYCAYGARCRYDHTKPPAAAGGA 65
Score = 63 (27.2 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 256 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 282
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 328 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 357
Score = 60 (26.2 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 168 EQQLCPY-AAAGECRFGDACVYLH 190
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 88 (36.0 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGSQCLFSH------------DLANSKPSTICKYYQK-GYCAYGARCRY 53
Query: 113 HHPKDRNGAG 122
H K AG
Sbjct: 54 DHTKPPAAAG 63
Score = 63 (27.2 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 256 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 282
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 356
Score = 57 (25.1 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 140 CPYYMRTGSCKFGVACKFHH 159
CPY G C+FG AC + H
Sbjct: 171 CPY-AAAGECRFGDACVYLH 189
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 118 (46.6 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
C+ + T C YG CKF H E + Q N+G + P +C N+S G CK+G
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEEL-QLKHQNLG-INNPKYK-TVLCDNFSTTGHCKYGT 130
Query: 316 TCRFDH 321
C+F H
Sbjct: 131 KCQFIH 136
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 83 (34.3 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C ++ G+C G+ C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYFMH-GVCREGNQCLFSH------------DLANSKPSTICKYYQK-GYCAYGTRCRY 53
Query: 113 HHPKDRNGAG 122
H + AG
Sbjct: 54 DHTRPSAAAG 63
Score = 63 (27.2 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 256 CRYY-MNTGTCKYGADCKFHH--PKERIAQ 282
C+Y+ GTC +G+ C + H P R+A+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAE 356
Score = 60 (26.2 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 136 DEKSCPYYMRTGSCKFGVACKFHH 159
+++ CPY G C+FG AC + H
Sbjct: 167 EQQLCPY-AAAGECRFGDACVYLH 189
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 254 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN-------IGPLGLPSRPGQAICSNYS 306
P+C+ + +G C G DC + H +E+ + +GPL + +C Y
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYY- 176
Query: 307 MYGICKFGPTCRFDHP 322
+ G C GP C HP
Sbjct: 177 VAGFCPEGPNCANAHP 192
Score = 66 (28.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/79 (31%), Positives = 31/79 (39%)
Query: 108 STCKYHHPK-DRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG 166
ST + P DR P G + D C Y G C G AC HP PS +
Sbjct: 14 STDRTREPGFDRFSFVPFLRKSYGFGLVTDVPVCKAYSE-GHCPLGPACPDRHPTPSRVT 72
Query: 167 TALPL-TGNASLGSMGSSV 184
T+ +G A + GS V
Sbjct: 73 TSTTTASGLAPSTTHGSLV 91
>ZFIN|ZDB-GENE-030131-2391 [details] [associations]
symbol:zfp36l1b "zinc finger protein 36, C3H
type-like 1b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-2391 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 HOGENOM:HOG000233479
HOVERGEN:HBG008483 InterPro:IPR007635 Pfam:PF04553 EMBL:BX649319
EMBL:BC063991 IPI:IPI00481341 RefSeq:NP_955943.1 UniGene:Dr.78307
SMR:Q6P3H0 Ensembl:ENSDART00000014168 GeneID:323671 KEGG:dre:323671
CTD:323671 InParanoid:Q6P3H0 OMA:SSITCIS NextBio:20808378
Uniprot:Q6P3H0
Length = 348
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 50/188 (26%), Positives = 73/188 (38%)
Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERN 90
G G +S Y P + G C YG C+F H + + +Y+ EL
Sbjct: 129 GNGQVNSSRYKTELCRP----FEENGTCKYGDKCQFAHGMHELRSLNRHPKYKTEL---- 180
Query: 91 GQPDCGYYLKTGTCKYGSTCKY-HHPKDRNGAGPVS-FNILGLPMRQDEKSCPYYMRTGS 148
C + G C YG C + H+ ++R G P+S FN + P S + +G
Sbjct: 181 ----CRTFHSIGYCPYGPRCHFIHNAEERRGPPPLSSFNKMERPRLHHSFSFAGFPSSGG 236
Query: 149 CKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGI-VPAPGWNTYMGN 207
+ P+S+ T PL L S+ S + A + VP+ G T
Sbjct: 237 SQ---------DSPTSV-TPPPLFSAEDLNEWSSNPFAFSSQELANLFVPSLGGTTIPDL 286
Query: 208 IGPLSPTS 215
GP SPTS
Sbjct: 287 PGPHSPTS 294
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 87 (35.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +Y + G+C GS C F+H +L C YY K G C YG+ C+Y
Sbjct: 8 CRYYVQ-GVCREGSKCLFSH------------DLSSSKSSTVCKYYQK-GQCAYGARCRY 53
Query: 113 HH---PKDRNGAGP 123
H P A P
Sbjct: 54 DHIRLPASGGAAAP 67
Score = 60 (26.2 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 239 ILSASSQNLPERPDQPDCRYY-MNTGTCKYGADCKFHH 275
++ A Q + ++P C+Y+ GTC +G C + H
Sbjct: 313 LIEAFKQGVGKKP----CKYFEQGKGTCPFGGKCLYFH 346
Score = 56 (24.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
+ G E+ CPY G+C FG C + H
Sbjct: 158 VAGSSFGDGEQLCPY-AAAGACHFGDRCLYLH 188
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
C+ + T C YG CKF H E + Q N G + P +C N+S G CK+G
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEEL-QLKQKNRG-VNHPKYK-TVLCDNFSRTGHCKYGT 134
Query: 316 TCRFDH 321
C+F H
Sbjct: 135 KCQFIH 140
>SGD|S000005975 [details] [associations]
symbol:LEE1 "Zinc-finger protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 SGD:S000005975 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006949 EMBL:U39205 eggNOG:COG5084
InterPro:IPR026290 PANTHER:PTHR11224 OrthoDB:EOG49S9H4 EMBL:X86735
EMBL:AY693073 PIR:S60936 RefSeq:NP_015271.1
ProteinModelPortal:Q02799 SMR:Q02799 STRING:Q02799
EnsemblFungi:YPL054W GeneID:856053 KEGG:sce:YPL054W CYGD:YPL054w
NextBio:981014 Genevestigator:Q02799 GermOnline:YPL054W
Uniprot:Q02799
Length = 301
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 57/211 (27%), Positives = 90/211 (42%)
Query: 173 GNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLG 232
GNA S ++ + +S +Q +P +N N+ LS G+ L +SSR Q +
Sbjct: 15 GNARRNSQSANEMLASQIQDFQNIPR-SFNDSNANVN-LSKNCTVGNQLPFSSRQQKIIM 72
Query: 233 AGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG 292
+ I +SQ + P C+++ G C+ G+ C F H + I S+A+N
Sbjct: 73 E--HLLITKNNSQQQKDYSHVP-CKFF-KMGNCQAGSSCPFSHSPDII--SSANN----- 121
Query: 293 LPSRPGQAICSNYSMYGICKFGPTCRFDHPYA-GYPINYGXXXXXXXXXXXXXMNHQAIS 351
LP C Y G CKFG C H G+ +N ++H A S
Sbjct: 122 LP-------CK-YFAKGNCKFGNKCVNAHVLPNGFKMNSKEPIDITPPSQNNYLSH-ARS 172
Query: 352 ATHSIETSP--DASSKIPNWVQNSDAVSVQH 380
A+ S TSP A ++ + N++ S Q+
Sbjct: 173 ASFSTYTSPPLSAQTEFSHSASNANYFSSQY 203
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 312
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 313 FGPTCRFDHPYAGYPI 328
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 312
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 313 FGPTCRFDHPYAGYPI 328
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 312
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 313 FGPTCRFDHPYAGYPI 328
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|Q9PTI4 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5084 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965
OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AADN02006362 EMBL:AADN02006363
EMBL:AF192787 IPI:IPI00595405 RefSeq:NP_990073.1 UniGene:Gga.1197
Ensembl:ENSGALT00000020962 GeneID:395500 KEGG:gga:395500
InParanoid:Q9PTI4 NextBio:20815579 Uniprot:Q9PTI4
Length = 464
Score = 95 (38.5 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 26/85 (30%), Positives = 34/85 (40%)
Query: 37 GVAQASPYPARPG-----EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNG 91
G A P PG + C ++ G+C G NCR++H Q A
Sbjct: 33 GPAAVPPLALGPGGGWTKQVTCRYFMH-GVCKEGDNCRYSHDLSTGQSAMV--------- 82
Query: 92 QPDCGYYLKTGTCKYGSTCKYHHPK 116
C YY + G C YG C+Y H K
Sbjct: 83 ---CRYYQR-GCCAYGDHCRYEHTK 103
Score = 56 (24.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 245 QNLPERPDQPDCRYY-MNTGTCKYGADCKFHH 275
Q E CRY+ G+C +G +C + H
Sbjct: 349 QKYKEAMSNKPCRYFDEGRGSCPFGGNCFYKH 380
Score = 49 (22.3 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 140 CPYYMRTGSCKFGVACKFHH 159
CPY G C++G C + H
Sbjct: 204 CPY-AAVGECRYGENCVYIH 222
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 90 (36.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 254 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 306
P+C ++ G C +C + H P+E++ + GP + +C NY
Sbjct: 91 PECYFFSKHGECN-NQECMYLHVNPEEKVRECPWYSRGFCKHGPKCRHKHIKKLLCENYY 149
Query: 307 MYGICKFGPTCRFDHP 322
+ G C GP C++ HP
Sbjct: 150 L-GFCPEGPKCKYGHP 164
Score = 68 (29.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 88 ERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+++G C ++LK G+C GS C Y H K
Sbjct: 31 DKDGSDICRFFLK-GSCTKGSDCPYKHTK 58
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 418 405 0.0010 117 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 611 (65 KB)
Total size of DFA: 289 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.69u 0.12s 37.81t Elapsed: 00:00:02
Total cpu time: 37.70u 0.12s 37.82t Elapsed: 00:00:02
Start: Mon May 20 19:08:53 2013 End: Mon May 20 19:08:55 2013