BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014805
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + +GTCKYG C+F H + L + +C + G C +GP
Sbjct: 9 CRPFEESGTCKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 60
Query: 316 TCRFDH 321
C F H
Sbjct: 61 RCHFIH 66
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQG----AQYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 9 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 60
Query: 109 TCKYHHPKD 117
C + H D
Sbjct: 61 RCHFIHNAD 69
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
C + ++GTCKYG C++ H G L + + C + G C +G
Sbjct: 9 CRPFEESGTCKYGEKCQFAH-------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGPR 61
Query: 155 CKFHH 159
C F H
Sbjct: 62 CHFIH 66
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR Y +G C+YGA C+F H + + +N P + +C + + G C +G
Sbjct: 15 CRTYSESGRCRYGAKCQFAHG---LGELRQANRHP-----KYKTELCHKFKLQGRCPYGS 66
Query: 316 TCRFDH 321
C F H
Sbjct: 67 RCHFIH 72
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y +G C YG+ C+F H + A +Y+ EL C + G C YGS
Sbjct: 15 CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL--------CHKFKLQGRCPYGS 66
Query: 109 TCKYHH 114
C + H
Sbjct: 67 RCHFIH 72
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 97 YYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACK 156
YY GT +Y + + +G+ V L P + K CP+++ G C+F C+
Sbjct: 37 YYSSWGTLEYHNAMVVGTEEAEDGSAGVRVLYL-YPTHKSLKPCPFFLE-GKCRFKENCR 94
Query: 157 FHHPQPSSLGTALPL 171
F H Q SL P
Sbjct: 95 FSHGQVVSLDELRPF 109
>pdb|2OG5|A Chain A, Crystal Structure Of Asparagine Oxygenase (Asno)
pdb|2OG6|A Chain A, Crystal Structure Of Asparagine Oxygenase In Complex With
Fe(Ii)
pdb|2OG7|A Chain A, Cystal Structure Of Asparagine Oxygenase In Complex With
Fe(Ii), 2s, 3s-3-Hydroxyasparagine And Succinate
Length = 357
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 90 NGQPDCGYYLKTGTCKYGS---TCKYHHPKDRNGAGPVSFNIL-GLPMRQDEKSCPYYMR 145
G+PD +++ + + T + R +GP +L GLP+ D P R
Sbjct: 60 TGRPDDAEWVEAARNAWHAWPATLRRDLAGFRRDSGPDGAIVLRGLPV--DSMGLPPTPR 117
Query: 146 T-GSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTY 204
GS + + +SLG A+ L LG G+ + +G +VP PG +
Sbjct: 118 VNGSVQ----------REASLGAAVLLMTACGLGDPGAFLPEKNGALVQDVVPVPGMEEF 167
Query: 205 MGNIG 209
GN G
Sbjct: 168 QGNAG 172
>pdb|2FC6|A Chain A, Solution Structure Of The Zf-Ccch Domain Of Target Of
Egr1, Member 1 (Nuclear)
Length = 50
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 300 AICSNYSMYGICKFGPTCRFDHPYAG 325
+IC N+S YG C GP C H +G
Sbjct: 21 SICDNFSAYGWCPLGPQCPQSHDISG 46
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 242 ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH 275
A ++N P C+ Y TG C G DC F H
Sbjct: 25 ARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSH 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,153,556
Number of Sequences: 62578
Number of extensions: 606254
Number of successful extensions: 756
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 29
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)