BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014805
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 198/424 (46%), Positives = 255/424 (60%), Gaps = 60/424 (14%)
Query: 1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
M D + V+S+ V+ +S+D IE+A ++K+++ GV + +PYP RPGE DC FY RTG
Sbjct: 5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60
Query: 61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
LCGYGS+CR+NHP + Q A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120
Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP---------------SS 164
GA PV FN++GLPMR EK CPYY+RTG+C+FGVACKFHHPQP +
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180
Query: 165 LGTALPLTGNASLGSMGSSVLPSSGLQYA-----GIVPAPGWNTYMGNIGPLSPTSIAGS 219
L A LT ++ G++ +P S + G +P GW YM A S
Sbjct: 181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AAS 229
Query: 220 NLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 278
N +Y+ +NQ G+ A M + A ++ L E DQP+CR++MNTGTCKYG DCK+ HP
Sbjct: 230 NSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGV 289
Query: 279 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSLPPL 337
RI+Q S I P LP+RPGQ C N+ YG CKFGP C+FDHP YP + SLP
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP-- 347
Query: 338 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 397
+ S + HQ IS T PN SD+ S+ + PD+K K S ++
Sbjct: 348 TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETE 387
Query: 398 KVDH 401
K D+
Sbjct: 388 KPDN 391
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 188/466 (40%), Positives = 251/466 (53%), Gaps = 100/466 (21%)
Query: 5 RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
+QV+++ + +S D IE+ R+K++++ + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6 QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61
Query: 65 GSNCRFNHP-AYAAQGA-QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
G++CR+NHP QG YR++LPER GQPDC +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62 GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117
Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS 182
PV FN+LGLPMRQ EK CPYYM+TG C+FGVACKFHHP P S P G+++
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHS----QPSNGHSAY---AM 170
Query: 183 SVLPSSGLQYA------------------------------------GIVPAPGWNTYMG 206
S PS G YA G++P GW TYM
Sbjct: 171 SSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM- 229
Query: 207 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 266
SN IY+ + Q D + A + + S + ++ +CR++MNTGTCK
Sbjct: 230 ----------TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCK 277
Query: 267 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH----- 321
YG DCK+ HPKER+ QS + + P+ LP+RPGQ C N+ YG CKFG C+FDH
Sbjct: 278 YGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLN 337
Query: 322 --------------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIE------ 357
PY P N +S PP ++L N + A + S+E
Sbjct: 338 PYNNTGLAMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDD 397
Query: 358 --TSPDASSKIPNWVQN-SDAVSVQHQNPDMKNSTTKNSDDSSKVD 400
T P+ S + N SD+ S+ + PD + T K DDS+++D
Sbjct: 398 SPTEPEKSEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 157/354 (44%), Positives = 212/354 (59%), Gaps = 49/354 (13%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+EA+W++ + ++ ++ PYP PGEPDC +Y RTGLC +G+ CRFNHP A
Sbjct: 8 QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64 ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL-----------PLTGNASLGSMG---- 181
E YY+RTG CKFG CKFHHPQPS++ ++ P T + G
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNW 183
Query: 182 --SSVLPSSGLQ----YA------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQG 229
SS +PS Q YA G+V PGW+TY G +G SP ++ Y + +QG
Sbjct: 184 SSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQG 243
Query: 230 DL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHH 275
+L AG Q + + N+ PERPDQP+C++YM TG CK+GA C+FHH
Sbjct: 244 ELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHH 303
Query: 276 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 329
P+ER + + P+GLP RPG+ +C YS YGICKFGP+C+FDHP + N
Sbjct: 304 PRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 176/410 (42%), Positives = 227/410 (55%), Gaps = 65/410 (15%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
EEA+W++ + + E G PYP R GEPDC +Y RTGLC +G C+FNHPA A
Sbjct: 36 EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++ A V N LG P+R +
Sbjct: 90 AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL--------------------------P 170
EK C YY+RTG CKFG CKFHHPQPS+ A+ P
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWP 209
Query: 171 LTGNASLGSMGSSVLP--SSGLQYA---GIVPAPGWNTYMGNIGPLSP----TSIAGSNL 221
L+ +AS + S P SS Q G+V PGWN Y IG S + G+
Sbjct: 210 LSRSASF--IASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQY 267
Query: 222 IYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 268
SR N GD G AG+ + + + +++ PERPDQP+C++YM TG CK+G
Sbjct: 268 YTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFG 327
Query: 269 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
A CKFHHPKERI + + LGLP RPG+ IC+ YS YGICKFGP C+FDHP +
Sbjct: 328 AVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGT--V 385
Query: 329 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 378
YGL+ P D S A HS E SPD S + +SD+ +
Sbjct: 386 MYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 151/377 (40%), Positives = 213/377 (56%), Gaps = 38/377 (10%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
++A+W++ + ++ + YP RPGEPDC +Y RTGLC +GS CRFNHP
Sbjct: 18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ----Y 192
E C Y++RTG CKFG CKF+HPQP +P +G S +S + S Q Y
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193
Query: 193 A------GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQN 246
A G+VP GWN Y G +G +SP+ G++ Y + Q + S S N
Sbjct: 194 ASLIMPQGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQSQGSFSGYN 252
Query: 247 ------------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI 288
PERP QP+C++YM TG CK+G CKFHHP++R A +
Sbjct: 253 PGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLL 312
Query: 289 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQ 348
+GLP RPG+ +C Y+ YGICKFGP+C+FDHP + + S ++++S +
Sbjct: 313 SSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETD-EVVETSTGKSR 371
Query: 349 AISATHSIETSPDASSK 365
+S + + + + +S K
Sbjct: 372 RLSVSETRQAATTSSGK 388
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 207/381 (54%), Gaps = 65/381 (17%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
EEA+W++ + GG +++PYP R GEPDC +Y RTGLC +G C+FNHP A
Sbjct: 44 EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ E P R GQP+C YYLKTGTCK+G+TCK+HHP+++ A V N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP---LTGNASLGSMGSSVLPSSGLQYA 193
EK C YY+RTG CKF CKFHHPQPS+ A+ + S S G P + +
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWT 219
Query: 194 --------------------------GIVPAPGWNTYMGNIGPLSP-------------- 213
G+V PGWN Y +G SP
Sbjct: 220 LSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYG 279
Query: 214 -----TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTCKY 267
T G + +Y S G + G + + +N+ PERPDQP+C++YM TG CK+
Sbjct: 280 SRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMKTGDCKF 335
Query: 268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP 327
GA CKFHHPKER+ + + LGLP RPG+ +C+ YS YGICKFGP C+FDHP
Sbjct: 336 GAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMG--T 393
Query: 328 INYGLSLPPLSILDSSLMNHQ 348
+ YG + P D S M++Q
Sbjct: 394 LMYGSATSPRG--DVSSMHYQ 412
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/356 (43%), Positives = 197/356 (55%), Gaps = 52/356 (14%)
Query: 22 EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
E +W+ G G Q PYP R GEPDC +Y RTGLC +G +CRFNHP A
Sbjct: 58 EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114
Query: 79 GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V N LG P+R E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174
Query: 138 KSCPYYMRTGSCKFGVACKFHHPQ-----PSSLGTAL------------PLTGN-ASLGS 179
K C YY++TG CK+G CKFHHP+ SS G+ + P TG AS
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234
Query: 180 MGSSVLPSSGLQ----YA------GIVPAPGWNTYMGNIGPLSPTSIA----GSNLIYSS 225
S +PS Q YA G+V P WN+Y G + P+S + G+ Y +
Sbjct: 235 PRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGT 294
Query: 226 RNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYMNTGTCKYGADCK 272
Q D AG Q + S + PERPDQP+C+YYM TG CK+GA CK
Sbjct: 295 SQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCK 354
Query: 273 FHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
FHHP+ R + + P+GLP RPG+ +C YS YGICKFG C+FDHP P+
Sbjct: 355 FHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 193/346 (55%), Gaps = 55/346 (15%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYA 76
++E++WRL + + YP RPG PDC +Y RTG+CGYG+ CR+NHP A
Sbjct: 28 LQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV 77
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQ 135
+ + PER G+P C +YLKTGTCK+G++CK+HHPK+ G+ V NI G P+R+
Sbjct: 78 EATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVRE 137
Query: 136 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP--------------------LTGNA 175
+ C YY++TG CKFG+ CKFHHPQP+ GT +P G +
Sbjct: 138 GDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVPPPPASAPQFYPSVQSLMPDQYGGPS 195
Query: 176 SLGSMGSSVLPSSGLQYA--------GIVPAPGWNTYMGNIGP-LSP--------TSIAG 218
S + ++LP S +Q A G+VP PGW+ Y + P LSP TS+ G
Sbjct: 196 SSLRVARTLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSPALSPGAQHAVGATSLYG 255
Query: 219 SNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP 276
+ S+ G + + + Q PERP +P+C+YY+ TG CK+G CKFHHP
Sbjct: 256 VTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP 315
Query: 277 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
++R+ A + P+GLP RPG C+ Y G CKFG TC+FDHP
Sbjct: 316 RDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 230 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 289
D G M L S + PERP PDC YYM TG C YG C+++HP++R A A+
Sbjct: 25 DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR-ASVEATVRA 83
Query: 290 PLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
P R G+ C Y G CKFG +C+F HP
Sbjct: 84 TGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 202/380 (53%), Gaps = 43/380 (11%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+ A+W++ + + G YP R GEPDC +Y RTGLC +GS CRFNHP
Sbjct: 19 QNAMWQMNLGSDDTMGVDGS---YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G G VS N+L P+R +
Sbjct: 76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135
Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIV 196
E C Y++R G CKFG CKF+HPQ S N + GS V S LQ
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185
Query: 197 PAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-------GAGAQMHILSASSQNL-P 248
P+ W+ P +G ++S +QG L G + + +N+ P
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSG----FASGSQGGLFSSGFHSGNSVPLGFYALPRENVFP 241
Query: 249 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 308
ERP QP+C++YM TG CK+G CKFHHP++R + +GLP RPG+ +C YS Y
Sbjct: 242 ERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRY 301
Query: 309 GICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAIS-------ATHSIETSPD 361
GICKFGP+C+FDHP + N + P S SSL AI+ + S+E P
Sbjct: 302 GICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAITTELRNLLVSSSVEAKP- 357
Query: 362 ASSKIPNWVQNSDA-VSVQH 380
+ +P D V QH
Sbjct: 358 --TSLPETTSAKDTIVDAQH 375
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 189/357 (52%), Gaps = 56/357 (15%)
Query: 13 ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
A + IE ++WRL + +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22 AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76
Query: 73 PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
P A G E E PER GQP C ++++TGTCK+G++CKYHHP+ G PVS
Sbjct: 77 PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136
Query: 126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL 185
N +G P+R EK C Y+MRTG CKFG C++HHP P G P S G ++
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMY 194
Query: 186 PS-------SGLQYA---------------------------GIVPAPGWNTYMGNIGPL 211
PS S QY G+VP GWN Y ++ +
Sbjct: 195 PSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAM 254
Query: 212 -SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 264
SP + G++ +Y S + +G +S Q P+RP+QP+C+Y+M TG
Sbjct: 255 PSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGD 314
Query: 265 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
CK+G C+FHHP E A AS + +GLP RPG C++++ +GICKFGP C+FDH
Sbjct: 315 CKFGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 27/125 (21%)
Query: 73 PAY----AAQGAQYREE-LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127
PAY ++ G +E+ P+R QP+C Y+++TG CK+G++C++HHP + + +
Sbjct: 279 PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLS 338
Query: 128 ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH----------------------PQPSSL 165
+GLP+R C ++ + G CKFG ACKF H P PSSL
Sbjct: 339 HIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYPSSL 398
Query: 166 GTALP 170
GT P
Sbjct: 399 GTLAP 403
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 194/352 (55%), Gaps = 52/352 (14%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQ 78
+E +WRL + GGG ++ YP RP EPDC++Y RTG+CGYGS CRFNHP A
Sbjct: 29 VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86
Query: 79 GAQYREE---LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
R E LPER G P C ++++TGTCK+G++CKYHHP+ G G PVS + LG P
Sbjct: 87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146
Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG------------------TALPLTGN 174
+R EK C YY+RTG CKFG+ C+F+HP P ++ T P +
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206
Query: 175 AS--------LGSMGSSVLPSSGLQYA---------GIVPAPGWNTYMGNIGPL-SPTS- 215
S L S L S LQ G+VP GWN Y ++ + SP +
Sbjct: 207 QSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQ 266
Query: 216 -IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 269
GS+ IY S G + +++S+ P+RPDQP+C+Y+M TG CK+G+
Sbjct: 267 PSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKFGS 326
Query: 270 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
C++HHP + + + +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 327 SCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 178/348 (51%), Gaps = 44/348 (12%)
Query: 11 AVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRF 70
+V + + A++ + +EG YP RP DC FY RTG C YGS+C+F
Sbjct: 65 SVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKF 124
Query: 71 NHPA-----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV- 124
NHP + + R+E E +C YY +TG CKYG +C++ H K+ N V
Sbjct: 125 NHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVP 184
Query: 125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALPLTGNASLGSMG-- 181
N LGLP+R EK CP+YMR GSCKFG CKF+HP P+++G PL + GS
Sbjct: 185 ELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPK 244
Query: 182 ---------------------SSVLPSSGLQYAGIVP-APGWNTYMGNIG------PLSP 213
+ +PS G+ P A WN Y + PL+P
Sbjct: 245 APSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAP 304
Query: 214 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 273
+S +N + + + + S + PERPDQP+C YY+ TG CK+ CK+
Sbjct: 305 SSYQVNNSLAET-------SSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKY 357
Query: 274 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
HHPK R+ + AA + GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct: 358 HHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR-NGAGPVSFNILGLPMRQDEKSCPY 142
EE PER QP+C YYLKTG CK+ CKYHHPK+R SFN GLP+R D+ C +
Sbjct: 329 EEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTH 388
Query: 143 YMRTGSCKFGVACKFHHPQPSSL 165
Y R G CKFG AC+F H P +
Sbjct: 389 YSRYGICKFGPACRFDHSIPPTF 411
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 249 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 308
E P +C+YY TG CKYG C+F H KE + ++ + LGLP RPG+ C Y
Sbjct: 147 ENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRN 206
Query: 309 GICKFGPTCRFDHP 322
G CKFG C+F+HP
Sbjct: 207 GSCKFGSDCKFNHP 220
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
+ P RP CS Y G CK+G +C+F+HP
Sbjct: 96 MVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHP 127
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 200/391 (51%), Gaps = 73/391 (18%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQAS-PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+EE++WR+ + GGG A A+ P RPGE DC++Y RTG CGYG NCR+NHP A
Sbjct: 23 LEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAA 82
Query: 79 GA--------QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG 130
A + E PER GQP C YY+K GTCK+GS CKY HP++ V N G
Sbjct: 83 AAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE-GSVQAVMLNSSG 141
Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHP---------------QPSSLGTALPLTGNA 175
P+R EK C YY++TG CKFG CKFHHP QP + ++ P A
Sbjct: 142 YPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLA 201
Query: 176 SLGSMGSSVLPSSGLQYA--------GIVPAPGWNTYMGNIGPLSPTSIAGSNL------ 221
VLP S L + +VP GWN Y I P++ + AG +
Sbjct: 202 GWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPY---ISPVNQVASAGGHQTVQAGP 258
Query: 222 IYSSRNQGDLGA---GAQMHILSASSQN---------LPERPDQPDCRYYMNTGTCKYGA 269
Y +QG A G+Q LS+S+ P RP QP+C+YY+ TG+CK+G+
Sbjct: 259 FYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGS 318
Query: 270 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY------ 323
CK+HHP+ + + PLGLP RPG C+ Y+ +G CKFGPTC+FDHP
Sbjct: 319 ACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYS 378
Query: 324 -----------AGYPINYGLS--LPPLSILD 341
A YP+NY ++ PP S D
Sbjct: 379 PSASSITDLPIAPYPLNYAVAPVAPPSSSSD 409
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 173/316 (54%), Gaps = 43/316 (13%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGY 97
YP RPG DC FY RTG C +GS+C+FNHP A+ + RE+ + + G DC Y
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166
Query: 98 YLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACK 156
Y +TG CKYG TC+++H ++G A N LGLP+R E CPYYMR GSCK+G CK
Sbjct: 167 YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECK 226
Query: 157 FHHPQPSSLG-TALP-LTGN--ASLGSMG---------------------SSVLPSSGLQ 191
F+HP P+++G T P GN S+G+ S +P Q
Sbjct: 227 FNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFIPVMLSQ 286
Query: 192 YAGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQ 245
G+ P WN Y ++ G SP++ + L+ +S + + H + A +
Sbjct: 287 THGVTSQNPEWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYRHQMPA--E 341
Query: 246 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNY 305
PERPDQP+C YYM TG CK+ +CK+HHPK R+ + + GLP RP Q IC+ Y
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYY 401
Query: 306 SMYGICKFGPTCRFDH 321
S YGICKFGP CRFDH
Sbjct: 402 SRYGICKFGPACRFDH 417
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 255 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 314
DC+YY TG CKYG C+F+H + ++A + LGLP RPG+ C Y G CK+G
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222
Query: 315 PTCRFDHP 322
C+F+HP
Sbjct: 223 AECKFNHP 230
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 294 PSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
P RPG CS Y G CKFG +C+F+HP A
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLA 138
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 182/342 (53%), Gaps = 49/342 (14%)
Query: 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREEL--PERNGQPDCGY 97
P RPGE DC++Y RTG CG+G CR+NHP GA+ L PER GQP C Y
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 98 YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKF 157
Y+KTGTCK+G+ CKYHHPK PV N G P+R EK C YYM+TG CKFG CKF
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKF 176
Query: 158 HHPQ----PSSLGTALPLTG--------NASLGS--MG------SSVLPSS---GLQYAG 194
HHP+ P + G PL ASL + MG S +P S + +G
Sbjct: 177 HHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSG 236
Query: 195 IVPAPGWNTYMGNIGPLSPTSIAGSNL----IYSSRNQGDLG----AGAQMHILSASSQN 246
++P GW+ Y ++ P+ + A N+ +Y + G G + S++ Q+
Sbjct: 237 MIPLQGWSPYPASVNPVV-SGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQS 295
Query: 247 --------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPG 298
PERP QPDC+YYM TG CK+GA CK+HHP+E A + + L LP RPG
Sbjct: 296 SNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPG 355
Query: 299 QAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSIL 340
C+ Y+ G C++G C++DHP + Y S PLS +
Sbjct: 356 AQPCAYYAQNGYCRYGVACKYDHPMGT--LGYSPSALPLSDM 395
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-AYAAQGAQYREE---LPERNGQPDCGYYL 99
+P RPG+PDC +Y RTG C +G+ C+++HP +A + Y LP R G C YY
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 100 KTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
+ G C+YG CKY HP G P + + +P+
Sbjct: 364 QNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPI 397
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 159/314 (50%), Gaps = 71/314 (22%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-AYAAQGAQYREELPERNGQPDCGYYLKTG 102
YP RPGEPDC +Y +T C YGS C+FNHP AA + ++ LPER +P C +Y+KTG
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281
Query: 103 TCKYGSTCKYHHPKDRNGAGP---------------------VSF------NILGLPMRQ 135
CK+G +CK+HHPKD V+F N GLP+R
Sbjct: 282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRS 341
Query: 136 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGI 195
E CP+Y++TGSCK+G C+++HP+ ++ + ++G+ Y+ +
Sbjct: 342 GEVDCPFYLKTGSCKYGATCRYNHPERTAF------------------IPQAAGVNYSLV 383
Query: 196 VPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPD 255
NT N+G ++P + Y + Q LG ++SA+ P+RP Q +
Sbjct: 384 ----SSNTANLNLGLVTP-----ATSFYQTLTQPTLG------VISAT---YPQRPGQSE 425
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMY 308
C YYM TG CK+G CKFHHP +R++ Q + G P R G C Y
Sbjct: 426 CDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKT 485
Query: 309 GICKFGPTCRFDHP 322
G CK+G TC+FDHP
Sbjct: 486 GTCKYGATCKFDHP 499
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 80/167 (47%), Gaps = 46/167 (27%)
Query: 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAAQGAQYREEL--------------- 86
P R GE DC FY +TG C YG+ CR+NHP A+ Q A L
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVTP 397
Query: 87 --------------------PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP--- 123
P+R GQ +C YY+KTG CK+G CK+HHP DR A
Sbjct: 398 ATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQA 457
Query: 124 -----VSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 165
V ++ G P R+ +CPYYM+TG+CK+G CKF HP P +
Sbjct: 458 PQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPGEV 504
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 245 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 304
+ PERP +PDC YY+ T CKYG+ CKF+HP+E A S + LP RP + +C+
Sbjct: 220 EEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD---SLPERPSEPMCTF 276
Query: 305 YSMYGICKFGPTCRFDHP 322
Y G CKFG +C+F HP
Sbjct: 277 YMKTGKCKFGLSCKFHHP 294
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 12/90 (13%)
Query: 37 GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
GV A+ YP RPG+ +C +Y +TG C +G C+F+HPA A Q + L
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 87 -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
P R G +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 248 PERPDQPDCRYYMNTGTCKYGADCKFHH----PKERIAQSAASNIGP-LGLPSRPGQAIC 302
P+R + DC +YM T TCK+G C+F H P+ I + + P P RPG+ C
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDC 231
Query: 303 SNYSMYGICKFGPTCRFDHP 322
Y CK+G C+F+HP
Sbjct: 232 PYYIKTQRCKYGSKCKFNHP 251
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 164/348 (47%), Gaps = 70/348 (20%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQG---------AQYREELPERNGQPD 94
YP RPGE DC FY T C +G +C+F+HP + +G A E PE+ G+PD
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPD 161
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGA---GPVSFNIL-----GLPMRQDEKSCPYYMRT 146
C +++KTG CK+GS CK++HPK++ A G + L LP+R E C +Y +T
Sbjct: 162 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 221
Query: 147 GSCKFGVACKFHHPQ----PSSLG---TALPLTGNASLGSMGSSV-----LPSSGLQY-- 192
G CKF CKF+HP+ PSS +A+ + G +GS SV P + Q
Sbjct: 222 GKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFN 281
Query: 193 -AGIVPAPG-----WNTYMGNIG-------------------PLSPTSIAG--SNLIYSS 225
G+ PG + MG+ PL T + S L+ SS
Sbjct: 282 SKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSS 341
Query: 226 RN--QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS 283
N QG A M + P+RP C +YM TG CK+ CKFHHP +R A
Sbjct: 342 ANFMQGFDFHAAHMPV-GPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPD 400
Query: 284 AASNIGP---------LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
++N P GLP R +C+ Y G+CKFG C+FDHP
Sbjct: 401 PSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 448
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 133/310 (42%), Gaps = 65/310 (20%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREE------LPERNGQ 92
YP + GEPDC F+ +TG C +GS C+FNHP A A+ + LP R +
Sbjct: 153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSE 212
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDR----------------------NGAGPVS----- 125
P C +Y KTG CK+ + CK++HPKD + A VS
Sbjct: 213 PLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQT 272
Query: 126 -------FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
FN GLPMR E CP+YM+ GSCKFG C+F+HP L LPL G L
Sbjct: 273 PVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPL-GQTILP 331
Query: 179 SMGSSVLPSSG-------LQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSS------ 225
+ S +L SS A + PG TY G + +
Sbjct: 332 TPESMLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFH 391
Query: 226 ----RNQGDLGAGAQ--MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 279
R+ D A + + + LP R D C +YM TG CK+G CKF HP +
Sbjct: 392 HPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQ 451
Query: 280 IAQSAASNIG 289
A + SN G
Sbjct: 452 EAIAKVSNSG 461
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ 191
P R EK C +YM T +CKFG +CKF HPQ +P G + ++V S Q
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQ------WVPEGGIPNWKEQAANVEESYPEQ 156
Query: 192 YAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERP 251
P +M G S N N G H++ A S LP RP
Sbjct: 157 EG----EPDCPFFM-KTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLI-ADSSILPVRP 210
Query: 252 DQPDCRYYMNTGTCKYGADCKFHHPKE--------------------------------- 278
+P C +Y TG CK+ A CKF+HPK+
Sbjct: 211 SEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKM 270
Query: 279 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP---YAGYPINYGLSLP 335
+ +AA GLP RPG+ C Y G CKFG TCRF+HP +P+ G ++
Sbjct: 271 QTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTIL 330
Query: 336 PLSILDSSLMNHQA 349
P +S L+N A
Sbjct: 331 PTP--ESMLLNSSA 342
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 240 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP-----------KERIAQSAASNI 288
L +S P+RP + DC +YM T TCK+G CKF HP KE+ A S
Sbjct: 95 LESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEES-- 152
Query: 289 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
P + G+ C + G CKFG C+F+HP
Sbjct: 153 ----YPEQEGEPDCPFFMKTGKCKFGSKCKFNHP 182
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 37/281 (13%)
Query: 83 REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVSFNILGLPMRQDEKS 139
+E + E + Q +C YY G CK+G CKY H + G A V N LGLP+R EK
Sbjct: 231 KEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKE 290
Query: 140 CPYYMRTGSCKFGVACKFHHPQPSSLGTALPL----TGNASLGSM-GSSVLPSSG----- 189
CPYYMRTGSCK+ CKFHHP PS++ + P G+A + GSS P++
Sbjct: 291 CPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQ 350
Query: 190 ---------------------LQYAGIVPAPGWNTY-MGNIGPLSPTSIAGSNLIYSSRN 227
L G+ P P WN Y + P P + + + N
Sbjct: 351 RTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPIN 410
Query: 228 QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN 287
A S+ PERP QP+C++++ +G CK+ CK+HHP+ + + A
Sbjct: 411 HPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGA-- 468
Query: 288 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
+ PLGLP +P Q +C+ Y YG+CKFGP C ++HP+ P+
Sbjct: 469 LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPV 509
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGL 190
P R E C YY++ GSC+FG+ CKF+HP G + G SS +S
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNKASSP 164
Query: 191 QYAGIVPAPGWNTYMGNIGPLSPT---SIAGS-----NLIYSSRNQGDLGAG----AQMH 238
P + +Y+ +I P + + GS N S D+ G ++
Sbjct: 165 DDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRVEPKELK 224
Query: 239 ILSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHHP--KERIAQSAASNIGPLGLPS 295
+ + + E Q +C+YY G CK+G CK+ H KE + ++ LGLP
Sbjct: 225 VAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPL 284
Query: 296 RPGQAICSNYSMYGICKFGPTCRFDHP 322
RPG+ C Y G CK+ C+F HP
Sbjct: 285 RPGEKECPYYMRTGSCKYATNCKFHHP 311
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP--AYAAQGAQYREELPERNGQPDCGYYLKT 101
YP RPG+P+C + ++G C + C+++HP GA LP + QP C YY +
Sbjct: 430 YPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRY 489
Query: 102 GTCKYGSTCKYHHP 115
G CK+G C Y+HP
Sbjct: 490 GVCKFGPACAYNHP 503
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 83 REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
R P R G+PDC YY+K G+C++G CK++HP +
Sbjct: 102 RPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKK 138
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 243 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 279
S P RP +PDC YY+ G+C++G CKF+HP +
Sbjct: 101 SRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
P RPGE +C +Y RTG C Y +NC+F+HP
Sbjct: 283 PLRPGEKECPYYMRTGSCKYATNCKFHHP 311
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 26/159 (16%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP----AYAAQGAQYREELPERNGQPDCGYYL 99
+P RPGEPDC +Y + G C +G +C +NHP + A + E+ P R G+PDC YY+
Sbjct: 41 HPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYV 100
Query: 100 KTGTCKYGSTCKYHHP----------------------KDRNGAGPVSFNILGLPMRQDE 137
K G+CK+G C+++HP + ++ V N+LGLP+R
Sbjct: 101 KFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGT 160
Query: 138 KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNAS 176
C YYM G CKFG CKF HP P S ++ NA+
Sbjct: 161 GLCSYYMNRGICKFGTNCKFDHPDPGSDHEKWVVSSNAN 199
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 21/103 (20%)
Query: 244 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP---------------------KERIAQ 282
++ P RP +PDC YY+ G+CK+G +C+F+HP E ++
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 283 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 325
+ LGLP RPG +CS Y GICKFG C+FDHP G
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPG 186
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 48 PGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKY 106
P + D + R T + G G P A + + E+ P R G+PDC YY+K G+CK+
Sbjct: 2 PQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKF 61
Query: 107 GSTCKYHHPKDRNGAGPVSFN-ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160
G +C Y+HP R G P R E C YY++ GSCKFG+ C+F+HP
Sbjct: 62 GISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHP 116
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%)
Query: 248 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 307
P RP +PDC YY+ G+CK+G C ++HP R A P RPG+ CS Y
Sbjct: 42 PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVK 101
Query: 308 YGICKFGPTCRFDHP 322
+G CKFG CRF+HP
Sbjct: 102 FGSCKFGMNCRFNHP 116
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 25/100 (25%)
Query: 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------------AYAAQGAQY 82
A +P RPGEPDC +Y + G C +G NCRFNHP + +G
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 83 REE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
E+ LP R G C YY+ G CK+G+ CK+ HP
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
subsp. japonica GN=Os06g0519400 PE=2 SV=1
Length = 279
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 34 EGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP 93
E + YP RPG PDC +Y G C +G C +NHPA A G + E P+R G+
Sbjct: 66 EPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCD-KLEHPQRPGEH 124
Query: 94 DCGYYLKTGTCKYGSTCKYHHPKDR---------------------NGAGPVSFNILGLP 132
DC +YL+ G CKYG C+++HP DR + A V N LGLP
Sbjct: 125 DCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLP 184
Query: 133 MRQDEKSCPYYMRTGSCKFGVACKFHHP-------------QPSSLGTALPLTGNASLGS 179
+R C YYM G CKFG CKFHHP Q + + + + + G
Sbjct: 185 LRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNIYSVLDHGE 244
Query: 180 MGSSVLPSS-GLQYAGIVPAPGWNTYMGNIGPLSP 213
+ +PS Q + + G+N Y+ L+P
Sbjct: 245 LNEQPVPSKDDFQVSFVQNIVGFNFYIWCDPELAP 279
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 34/144 (23%)
Query: 248 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA--------------------SN 287
P+RP + DC +Y+ G CKYG +C+F+HP +R+ Q
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 288 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY------------PINYGLSLP 335
+ LGLP RPG +CS Y GICKFG C+F HP +G I+ G+++
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNI- 236
Query: 336 PLSILDSSLMNHQAISATHSIETS 359
S+LD +N Q + + + S
Sbjct: 237 -YSVLDHGELNEQPVPSKDDFQVS 259
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 25/118 (21%)
Query: 27 LKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------- 73
L H + GG + +P RPGE DCL Y R G C YG NCRFNHP
Sbjct: 101 LYNHPAKHAGGCDKLE-HPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPW 159
Query: 74 ----AYAAQGAQYREE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
+ ++G E LP R G C YY+ G CK+GS CK+HHP +G
Sbjct: 160 KACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSG 217
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 245 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 304
Q P RP PDC YY+ G+CK+G C ++HP + A L P RPG+ C +
Sbjct: 74 QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH-----AGGCDKLEHPQRPGEHDCLH 128
Query: 305 YSMYGICKFGPTCRFDHP 322
Y +G CK+G CRF+HP
Sbjct: 129 YLRFGRCKYGMNCRFNHP 146
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 247 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 276
LP RP C YYMN G CK+G++CKFHHP
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
thaliana GN=At1g48195 PE=4 SV=1
Length = 82
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 243 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 302
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 303 SNYSMYGICKFGPTCRFDH 321
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
E+ PER G+P+C YYL+TG C CKYHHPK+ + P + N GLP+R + CP+
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 143 YMRTGSCKFGVACKFHH 159
Y R G C+ G CKF H
Sbjct: 64 YSRFGICRSGPTCKFDH 80
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
+P RPGEP+C +Y RTG C NC+++HP Q + LP R GQ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 100 KTGTCKYGSTCKYHH 114
+ G C+ G TCK+ H
Sbjct: 66 RFGICRSGPTCKFDH 80
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
P R E C YY+RTG+C CK+HHP+
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPK 36
>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
Length = 389
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 13/81 (16%)
Query: 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYL 99
+S YP RPGE +CLFY + LC +GS C +NHP +E+P R G+ DC
Sbjct: 125 SSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHPPL--------QEIPCRIGKKLDC---- 172
Query: 100 KTGTCKYGSTCKYHHPKDRNG 120
K G CK GS C ++HPK+R+G
Sbjct: 173 KAGACKRGSNCPFNHPKERDG 193
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK-SCPYYMR 145
P R G+ +C +Y+K C++GS C Y+HP + +P R +K C +
Sbjct: 129 PVRPGEDNCLFYMKNHLCEWGSECCYNHPP-----------LQEIPCRIGKKLDC----K 173
Query: 146 TGSCKFGVACKFHHPQPSSLGTALPL 171
G+CK G C F+HP+ G +LP+
Sbjct: 174 AGACKRGSNCPFNHPKERD-GDSLPM 198
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 33/117 (28%)
Query: 219 SNLIYSSRNQGDLGAGAQMH-----------ILSASSQNLPERPDQPDCRYYMNTGTCKY 267
S L +R Q G+ ++M +LS++ P RP + +C +YM C++
Sbjct: 92 SRLWQRARTQDRRGSESRMMFDGRTQWSHAPVLSSA---YPVRPGEDNCLFYMKNHLCEW 148
Query: 268 GADCKFHHPKERIAQSAASNIGPL-GLPSRPGQAI-CSNYSMYGICKFGPTCRFDHP 322
G++C ++HP PL +P R G+ + C G CK G C F+HP
Sbjct: 149 GSECCYNHP-------------PLQEIPCRIGKKLDCK----AGACKRGSNCPFNHP 188
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 43/92 (46%), Gaps = 27/92 (29%)
Query: 33 QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
Q + Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP Q ELP R
Sbjct: 41 QSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQ------ELPVR--- 91
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124
CK H DRN A P+
Sbjct: 92 ----------ICK--------HIMDRNVAEPM 105
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 248 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER 279
P RP + DC++Y+ G C+Y + C+F+HP +R
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 277 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
KER+ QS+ P RPG+ C Y G+C++ +CRF+HP
Sbjct: 43 KERMRQSSP-------YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHP 160
P+R +K C +Y++ G C++ +C+F+HP
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
Length = 527
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 202 NTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 261
N + G + ++ IAG ++ S + AG + +L Q PERP +P CRYYM
Sbjct: 167 NAHDGILDDINCAQIAGKHVGDHSNCANVIKAGV-ISLLGKLVQ-YPERPGEPFCRYYMK 224
Query: 262 TGTCKYGADCKFHHPKERIAQSAASNI 288
G CK+ CK++HPK+R + + I
Sbjct: 225 FGECKHMTFCKYNHPKDRFSCKTTNTI 251
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
PER G+P C YY+K G CK+ + CKY+HPKDR
Sbjct: 211 PERPGEPFCRYYMKFGECKHMTFCKYNHPKDR 242
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
+ + YP RPGEP C +Y + G C + + C++NHP
Sbjct: 204 LGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 121 AGPVSF--NILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQ 161
AG +S ++ P R E C YYM+ G CK CK++HP+
Sbjct: 198 AGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHPK 240
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 280 IAQSAASNIGPL-GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322
I S +G L P RPG+ C Y +G CK C+++HP
Sbjct: 196 IKAGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 60 GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
GLC +NC+ H +PER PDC YYL+ G C C Y H N
Sbjct: 280 GLCA-NANCKLTHKV-----------IPER--MPDCSYYLQ-GLCN-NEACPYRHVHV-N 322
Query: 120 GAGPVSFNIL-GLPMRQDE------KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLT 172
P+ L G DE +CP + TGSC G+ CK HHP+ S G T
Sbjct: 323 PIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRT 382
Query: 173 GNAS 176
S
Sbjct: 383 NEPS 386
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y R LC G NC + H P C +++K G C+ G C Y
Sbjct: 99 CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144
Query: 113 HHPKDRNGAGP---VSFNILG--LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163
HP+DR P F +LG P + + G C G CK HP P+
Sbjct: 145 FHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 254 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 308
P C +++ G C+ G +C + HP++R + N G L P+ P + I C Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 309 GICKFGPTCRFDHPYAGYP 327
G C G C+ HP P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y R LC G NC + H P C +++K G C+ G C Y
Sbjct: 99 CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144
Query: 113 HHPKDRNGAGP---VSFNILG--LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163
HP+DR P F +LG P + + G C G CK HP P+
Sbjct: 145 FHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAAGFCPDGKDCKLAHPSPN 200
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 254 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 308
P C +++ G C+ G +C + HP++R + N G L P+ P + I C Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 309 GICKFGPTCRFDHPYAGYP 327
G C G C+ HP P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 312
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 313 FGPTCRFDHPYAGYPI 328
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 16 SADNIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
S D+I+ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIK---FDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRHI 60
Query: 74 AYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
+ C ++L+ G CK G C++ H D F P+
Sbjct: 61 SGEKTVV--------------CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPL 105
Query: 134 RQDEKS----CPYYMRTGSCKFGVACKFHHPQ 161
+ + C Y+ G C G +CKF HP+
Sbjct: 106 CRHRHTRRVICVNYL-VGFCPEGPSCKFMHPR 136
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
PV F + M +D +CP+Y +TG+C+FG C H P+S T L + + G
Sbjct: 164 PVDFRV----MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG 215
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
PV F + M +D +CP+Y +TG+C+FG C H P+S T L + + G
Sbjct: 159 PVDFRV----MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG 210
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 312
CR + +G C+YGA C+F H +G L PSR + +C + + G C
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQPSRHPKYKTELCHKFYLQGRCP 155
Query: 313 FGPTCRFDH 321
+G C F H
Sbjct: 156 YGSRCHFIH 164
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG+ C+F H ++ +Y+ EL C + G C YGS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTEL--------CHKFYLQGRCPYGS 158
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 159 RCHFIHNPSEDLAAPGHPHVL 179
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTAL 169
P++QD+ CP++++TG+C+FGV C H P T L
Sbjct: 161 PIQQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLL 198
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
C+ + +GTC+YG+ C+F H + + + P P + C ++ MYG C +G
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKE-------PPRHPKYKSER-CRSFMMYGYCPYGL 383
Query: 316 TCRFDH 321
C F H
Sbjct: 384 RCCFLH 389
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
C + +GTC+YGS C++ H P P + E+ C +M G C +G+
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKEPPRH------PKYKSER-CRSFMMYGYCPYGLR 384
Query: 155 CKFHH 159
C F H
Sbjct: 385 CCFLH 389
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 30 HDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPE- 88
H + GVA EP C ++ +G C YGS C+F H G Q +E P
Sbjct: 310 HGSGSSNGVAPNGKRALYKTEP-CKNWQISGTCRYGSKCQFAH------GNQELKEPPRH 362
Query: 89 -RNGQPDCGYYLKTGTCKYGSTCKYHH 114
+ C ++ G C YG C + H
Sbjct: 363 PKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + +GTCKYG C+F H + L + +C + G C +GP
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 210
Query: 316 TCRFDH 321
C F H
Sbjct: 211 RCHFIH 216
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 210
Query: 109 TCKYHHPKDRNGAGP 123
C + H D P
Sbjct: 211 RCHFIHNADERRPAP 225
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + +GTCKYG C+F H + L + +C + G C +GP
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 183
Query: 316 TCRFDH 321
C F H
Sbjct: 184 RCHFIH 189
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 183
Query: 109 TCKYHHPKDRN 119
C + H D
Sbjct: 184 RCHFIHNADER 194
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 27/104 (25%)
Query: 264 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 323
C++ CKF H E+ S +IG IC N+ YG CK+G C F +
Sbjct: 113 VCEFNETCKFSHDVEKYLASKPKSIG-----------ICQNFQTYGECKYGLNCYFGECH 161
Query: 324 AGYPINYGLSLPPLSILDS-SLMNHQAISATHSIETSPDASSKI 366
I+D+ +++N + I ++T + S++I
Sbjct: 162 ---------------IVDNKTIVNKELIGKVEPVKTLNEVSNEI 190
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 76 AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG-PVSFNILGLPMR 134
AA+ ++R +L E C K C++ TCK+ H ++ A P S I
Sbjct: 86 AAKKKEFRNQLRESMNDKLCPKISKGLVCEFNETCKFSHDVEKYLASKPKSIGI------ 139
Query: 135 QDEKSCPYYMRTGSCKFGVACKF 157
C + G CK+G+ C F
Sbjct: 140 -----CQNFQTYGECKYGLNCYF 157
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + +G CKYG C+F H + L + +C + G C +GP
Sbjct: 137 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 188
Query: 316 TCRFDH 321
C F H
Sbjct: 189 RCHFIH 194
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 137 CRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 188
Query: 109 TCKYHHPKDRNGAGP 123
C + H + P
Sbjct: 189 RCHFIHNAEERRQAP 203
>sp|Q02799|LEE1_YEAST Zinc finger protein LEE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LEE1 PE=4 SV=1
Length = 301
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 29/213 (13%)
Query: 173 GNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLG 232
GNA S ++ + +S +Q +P +N N+ LS G+ L +SSR Q +
Sbjct: 15 GNARRNSQSANEMLASQIQDFQNIPR-SFNDSNANVN-LSKNCTVGNQLPFSSRQQKIIM 72
Query: 233 AGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG 292
+ I +SQ + P C+++ G C+ G+ C F H + I S+A+N
Sbjct: 73 E--HLLITKNNSQQQKDYSHVP-CKFF-KMGNCQAGSSCPFSHSPDII--SSANN----- 121
Query: 293 LPSRPGQAICSNYSMYGICKFGPTCRFDHPY-AGYPINYGLSLPPLSILDSSLMNH--QA 349
LP + Y G CKFG C H G+ +N S P+ I S N+ A
Sbjct: 122 LPCK--------YFAKGNCKFGNKCVNAHVLPNGFKMN---SKEPIDITPPSQNNYLSHA 170
Query: 350 ISATHSIETSP--DASSKIPNWVQNSDAVSVQH 380
SA+ S TSP A ++ + N++ S Q+
Sbjct: 171 RSASFSTYTSPPLSAQTEFSHSASNANYFSSQY 203
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 60 GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
GLC G NC F H Y Q P+C +Y+K G C C+Y H D
Sbjct: 66 GLCKKGLNCEFLH-EYNLQKM------------PECQFYVKNGFCTQSPDCQYLH-IDPA 111
Query: 120 GAGPVSFNI-LGLPMRQDEKS--------CPYYMRTGSCKFGVACKFHHPQ 161
PV FN G E S C YM TG C G C+F HP+
Sbjct: 112 SKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM-TGFCPKGRVCEFAHPK 161
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 254 PDCRYYMNTGTCKYGADCKFHH--PKERI-----AQSAASNIGPLGLPSRPGQAICSNYS 306
P+C++Y+ G C DC++ H P +I + +GP + C Y
Sbjct: 86 PECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELY- 144
Query: 307 MYGICKFGPTCRFDHP 322
M G C G C F HP
Sbjct: 145 MTGFCPKGRVCEFAHP 160
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 20/70 (28%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
C+++ N GTC G +C F H E RP IC Y + G CKFGP
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLET---------------ERP---IC-KYFLKGNCKFGP 86
Query: 316 TCRFDHPYAG 325
C H G
Sbjct: 87 KCALSHALPG 96
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C F+R G C G NC F+H ER P C Y+LK G CK+G C
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLET-----------ER---PICKYFLK-GNCKFGPKCAL 90
Query: 113 HH 114
H
Sbjct: 91 SH 92
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 18/65 (27%)
Query: 98 YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKF 157
+ + GTC G C + H + + C Y+++ G+CKFG C
Sbjct: 49 FFRNGTCTAGENCPFSHS-----------------LETERPICKYFLK-GNCKFGPKCAL 90
Query: 158 HHPQP 162
H P
Sbjct: 91 SHALP 95
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 139 CRPFEENGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 190
Query: 316 TCRFDH 321
C F H
Sbjct: 191 RCHFIH 196
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 139 CRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 190
Query: 109 TCKYHHPKDRNGAGP 123
C + H + P
Sbjct: 191 RCHFIHNAEERRQAP 205
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
Query: 217 AGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPD---------CRYYMNTGTCKY 267
A ++L+ + N G++ +H +Q+ P P QP CR + G CKY
Sbjct: 97 AVASLVTITENLGNM----NLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKY 152
Query: 268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321
G C+F H + + C + G C +GP C F H
Sbjct: 153 GEKCQFAHGSHELRNVHRH--------PKYKTEYCRTFHSVGFCPYGPRCHFVH 198
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 13 ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYP-------ARPGEPDCLFYRRTGLCGYG 65
A S I E + + +H E Q+ P P +R C + G C YG
Sbjct: 97 AVASLVTITENLGNMNLHRKLE---RTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYG 153
Query: 66 SNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
C+F H ++ + +Y+ E C + G C YG C + H D
Sbjct: 154 EKCQFAHGSHELRNVHRHPKYKTEY--------CRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR Y +G C+YGA C+F H + Q +N P + +C + + G C +G
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 152
Query: 316 TCRFDH 321
C F H
Sbjct: 153 RCHFIH 158
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y +G C YG+ C+F H + A +Y+ EL C + G C YGS
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 152
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 153 RCHFIHNPTEDLALPGQPHVL 173
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR Y +G C+YGA C+F H + Q +N P + +C + + G C +G
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 153
Query: 316 TCRFDH 321
C F H
Sbjct: 154 RCHFIH 159
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNH-PAYAAQG---AQYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y +G C YG+ C+F H P Q +Y+ EL C + G C YGS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 153
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 154 RCHFIHNPTEDLALPGQPHVL 174
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 81 QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSC 140
+Y+ EL C Y ++G C+YG+ C++ H GP + + C
Sbjct: 96 RYKTEL--------CRTYSESGRCRYGAKCQFAH-------GPGELRQANRHPKYKTELC 140
Query: 141 PYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS 187
+ G C +G C F H L ALP + S+ S LPS
Sbjct: 141 HKFYLQGRCPYGSRCHFIHNPTEDL--ALPGQPHVLRQSISFSGLPS 185
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 16/158 (10%)
Query: 180 MGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTS-IAGSNLIYSSR-NQGDLGAGAQM 237
+G+ LP G+ +G + G + P I+G + +G G Q
Sbjct: 23 LGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQC 82
Query: 238 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGP 290
L P+C +Y G C +C F H P+ +I GP
Sbjct: 83 EFLHEYDMT-----KMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGP 136
Query: 291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
L + IC NY + G C GP+C+F HP P+
Sbjct: 137 LCRHRHTRRVICVNY-LVGFCPEGPSCKFMHPRFELPM 173
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 60/158 (37%), Gaps = 36/158 (22%)
Query: 16 SADNIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
S D+I+ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIK---FDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRHI 60
Query: 74 AYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN------ 127
+ C ++L+ G CK G C++ H D F
Sbjct: 61 SGEKTVV--------------CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGEC 105
Query: 128 ------ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
L + K CP+Y R G CK G C+ H
Sbjct: 106 SNKECPFLHIDPESKIKDCPWYDR-GFCKHGPLCRHRH 142
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 16/158 (10%)
Query: 180 MGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTS-IAGSNLIYSSR-NQGDLGAGAQM 237
+G+ LP G+ +G + G + P I+G + +G G Q
Sbjct: 23 LGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQC 82
Query: 238 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGP 290
L P+C +Y G C +C F H P+ +I GP
Sbjct: 83 EFLHEYDMT-----KMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGP 136
Query: 291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328
L + IC NY + G C GP+C+F HP P+
Sbjct: 137 LCRHRHTRRVICVNY-LVGFCPEGPSCKFMHPRFELPM 173
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 60/158 (37%), Gaps = 36/158 (22%)
Query: 16 SADNIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
S D+I+ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIK---FDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRHI 60
Query: 74 AYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN------ 127
+ C ++L+ G CK G C++ H D F
Sbjct: 61 SGEKTVV--------------CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGEC 105
Query: 128 ------ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
L + K CP+Y R G CK G C+ H
Sbjct: 106 SNKECPFLHIDPESKIKDCPWYDR-GFCKHGPLCRHRH 142
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 62 CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +G C+F H A+Y E PE + +P+C Y G C YG TC++
Sbjct: 139 CFFGDKCKFLHDV-----AKYVSEKPE-DIRPNCYLYETFGKCIYGVTCRF 183
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 265 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
C +G CKF H + +I RP C Y +G C +G TCRF +
Sbjct: 139 CFFGDKCKFLHDVAKYVSEKPEDI-------RPN---CYLYETFGKCIYGVTCRFAKSHL 188
Query: 325 G 325
G
Sbjct: 189 G 189
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 62 CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +G C+F+H A+Y + PE + +P+C Y G C YG TC++
Sbjct: 140 CFFGDKCKFSHDV-----AKYVSQKPE-DIRPNCHLYETFGKCIYGVTCRF 184
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 25/138 (18%)
Query: 265 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324
C +G CKF H + +I RP C Y +G C +G TCRF +
Sbjct: 140 CFFGDKCKFSHDVAKYVSQKPEDI-------RPN---CHLYETFGKCIYGVTCRFAKSHL 189
Query: 325 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPD 384
G +I++ LM + ++ S D S K + V + D
Sbjct: 190 GEDFK--------NIINEELM--KEWEGKVLVKNSLDKSLK-----EQLRKKKVVFEKSD 234
Query: 385 MKNSTTKNSDDSSKVDHP 402
S DSSK+ +P
Sbjct: 235 KYLKLCFKSGDSSKMKNP 252
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 256 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 315
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171
Query: 316 TCRFDH 321
C F H
Sbjct: 172 RCHFIH 177
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+ E RL Q G G +S Y P + G C YG C+F H + +
Sbjct: 90 SFSEGGERLLPTQKQPGSGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145
Query: 79 GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
+Y+ EL C + G C YG C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 17/167 (10%)
Query: 180 MGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTS-IAGSNLIYSSR-NQGDLGAGAQM 237
+G+ LP G+ +G + G + P I+G + +G G Q
Sbjct: 23 LGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQC 82
Query: 238 HILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGP 290
L P+C +Y G C +C F H P+ +I GP
Sbjct: 83 EFLHEYDMT-----KMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGP 136
Query: 291 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPL 337
L + IC NY + G C GP C+F HP P+ PPL
Sbjct: 137 LCRHRHTRRVICVNY-LVGFCIEGPNCKFMHPRFELPMGTA-EQPPL 181
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 33/154 (21%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77
++ + L++ Q+ G AQ P+P + G C F+ ++ CG G C F H +
Sbjct: 8 VDHLRFDLELAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKSA-CGKGGMCPFRHISGEK 64
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN---------- 127
C ++L+ G CK G C++ H D F
Sbjct: 65 TVV--------------CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKE 109
Query: 128 --ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH 159
L + K CP+Y R G CK G C+ H
Sbjct: 110 CPFLHIDPESKIKDCPWYDR-GFCKHGPLCRHRH 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,275,477
Number of Sequences: 539616
Number of extensions: 7976712
Number of successful extensions: 15866
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 14100
Number of HSP's gapped (non-prelim): 1234
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)