Query 014805
Match_columns 418
No_of_seqs 362 out of 1888
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.9 3.3E-21 7.3E-26 193.3 16.1 243 41-319 77-332 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.6 1.3E-15 2.9E-20 152.9 7.2 80 245-326 124-204 (332)
3 KOG1492 C3H1-type Zn-finger pr 99.5 2.1E-15 4.6E-20 141.9 3.5 132 47-323 203-334 (377)
4 KOG1040 Polyadenylation factor 99.5 1.5E-14 3.2E-19 144.7 7.0 144 46-327 41-186 (325)
5 KOG1040 Polyadenylation factor 99.5 1.2E-14 2.5E-19 145.4 5.6 154 46-325 73-227 (325)
6 KOG2494 C3H1-type Zn-finger pr 99.3 1.3E-12 2.7E-17 129.0 6.4 200 51-325 38-255 (331)
7 KOG1492 C3H1-type Zn-finger pr 99.3 6.6E-12 1.4E-16 118.4 6.0 114 91-329 205-318 (377)
8 COG5063 CTH1 CCCH-type Zn-fing 99.1 2.4E-10 5.2E-15 111.8 10.1 193 48-328 113-343 (351)
9 COG5063 CTH1 CCCH-type Zn-fing 99.0 6.5E-10 1.4E-14 108.8 8.1 179 91-325 114-300 (351)
10 COG5084 YTH1 Cleavage and poly 99.0 2.9E-09 6.3E-14 104.9 12.2 151 49-329 73-239 (285)
11 COG5084 YTH1 Cleavage and poly 98.7 2.1E-08 4.5E-13 98.9 7.3 88 48-163 102-191 (285)
12 KOG1595 CCCH-type Zn-finger pr 98.6 3.5E-07 7.6E-12 95.9 12.1 58 254-326 237-294 (528)
13 KOG4791 Uncharacterized conser 98.4 2.1E-07 4.5E-12 96.0 4.6 82 51-163 4-86 (667)
14 PF00642 zf-CCCH: Zinc finger 98.3 1.2E-07 2.6E-12 61.4 0.5 27 48-74 1-27 (27)
15 PF00642 zf-CCCH: Zinc finger 98.3 2.8E-07 6E-12 59.7 1.7 27 251-277 1-27 (27)
16 KOG4791 Uncharacterized conser 98.2 4.7E-07 1E-11 93.4 1.8 128 92-325 3-143 (667)
17 KOG2494 C3H1-type Zn-finger pr 98.2 6.8E-07 1.5E-11 88.8 1.9 67 93-174 38-105 (331)
18 KOG1595 CCCH-type Zn-finger pr 98.0 5.1E-06 1.1E-10 87.4 4.5 86 60-163 207-293 (528)
19 KOG3702 Nuclear polyadenylated 97.7 7.5E-05 1.6E-09 80.2 7.6 81 66-163 525-607 (681)
20 smart00356 ZnF_C3H1 zinc finge 97.7 2.5E-05 5.4E-10 49.8 2.5 26 48-74 2-27 (27)
21 KOG1763 Uncharacterized conser 97.7 7.4E-06 1.6E-10 80.4 -0.7 72 46-118 88-192 (343)
22 smart00356 ZnF_C3H1 zinc finge 97.6 3.8E-05 8.3E-10 48.9 2.4 26 297-323 2-27 (27)
23 KOG2333 Uncharacterized conser 97.3 6.3E-05 1.4E-09 78.6 0.9 60 92-160 76-137 (614)
24 KOG2333 Uncharacterized conser 97.3 0.00014 3E-09 76.1 2.8 60 252-321 75-136 (614)
25 KOG1763 Uncharacterized conser 97.0 0.00026 5.6E-09 69.8 1.4 78 250-331 89-195 (343)
26 KOG3702 Nuclear polyadenylated 96.9 0.0011 2.4E-08 71.5 4.9 79 61-163 486-566 (681)
27 COG5252 Uncharacterized conser 96.7 0.00049 1.1E-08 66.0 0.4 73 45-118 80-177 (299)
28 COG5252 Uncharacterized conser 96.1 0.002 4.4E-08 61.9 1.1 78 250-331 82-180 (299)
29 KOG2185 Predicted RNA-processi 96.1 0.0028 6.1E-08 65.1 2.2 30 87-117 135-164 (486)
30 PF14608 zf-CCCH_2: Zinc finge 96.1 0.0034 7.4E-08 37.4 1.7 19 52-73 1-19 (19)
31 KOG2185 Predicted RNA-processi 96.1 0.0031 6.7E-08 64.8 2.4 31 131-162 134-164 (486)
32 PF14608 zf-CCCH_2: Zinc finge 96.1 0.0035 7.6E-08 37.4 1.6 19 94-115 1-19 (19)
33 COG5152 Uncharacterized conser 95.0 0.0073 1.6E-07 56.8 0.5 27 93-119 142-168 (259)
34 COG5152 Uncharacterized conser 94.6 0.012 2.5E-07 55.5 0.6 30 296-325 138-167 (259)
35 KOG1813 Predicted E3 ubiquitin 91.0 0.067 1.5E-06 53.2 0.0 26 94-119 188-213 (313)
36 KOG1039 Predicted E3 ubiquitin 90.7 0.09 1.9E-06 53.8 0.6 24 93-117 9-32 (344)
37 KOG1813 Predicted E3 ubiquitin 89.5 0.1 2.2E-06 51.9 -0.0 27 298-324 185-211 (313)
38 PF10650 zf-C3H1: Putative zin 88.8 0.24 5.1E-06 31.1 1.2 22 93-115 1-22 (23)
39 KOG2202 U2 snRNP splicing fact 86.2 0.26 5.7E-06 48.2 0.5 28 295-323 148-175 (260)
40 KOG1039 Predicted E3 ubiquitin 85.7 0.31 6.8E-06 50.0 0.8 25 300-325 9-33 (344)
41 PF10650 zf-C3H1: Putative zin 83.1 0.89 1.9E-05 28.5 1.7 22 138-160 1-22 (23)
42 KOG0153 Predicted RNA-binding 75.7 2.4 5.3E-05 43.3 3.1 32 43-75 154-185 (377)
43 KOG2202 U2 snRNP splicing fact 65.9 5.9 0.00013 39.0 3.3 30 45-75 147-176 (260)
44 KOG0153 Predicted RNA-binding 65.3 3.4 7.4E-05 42.3 1.5 28 89-117 158-185 (377)
45 COG5175 MOT2 Transcriptional r 25.6 20 0.00044 36.8 -0.4 34 43-77 194-228 (480)
46 KOG2135 Proteins containing th 23.4 72 0.0016 34.3 3.1 34 250-283 209-242 (526)
47 KOG2135 Proteins containing th 22.7 32 0.00069 36.8 0.4 37 41-77 203-239 (526)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=193.29 Aligned_cols=243 Identities=36% Similarity=0.688 Sum_probs=155.0
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCCCCCCCcc-ccc-ccc--cccccCCCCccccccccccccccCCC-CCCCCCCCC
Q 014805 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAA-QGA--QYREELPERNGQPDCGYYLKTGTCKY-GSTCKYHHP 115 (418)
Q Consensus 41 ~~~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~-~~~-~~~--~~~~~~per~~~~~Ck~flktG~Ck~-G~~Crf~H~ 115 (418)
...|+++....+|.+|.+++.|.++..|+|.|+. ... ... ......+++.++++|++|.++|.|+| |++|+|.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence 3468999988999999999999999999999996 322 222 35567789999999999999999999 999999999
Q ss_pred CCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCC------CCCCCCCCCCCccCCCC
Q 014805 116 KDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLT------GNASLGSMGSSVLPSSG 189 (418)
Q Consensus 116 ~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~------~~~~~~~~~~~~~pss~ 189 (418)
..+..... .++..+.+.++++++|.+|+++|.|+||.+|+|.|+............ ....++ ....-+.
T Consensus 157 ~~e~r~~~-~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 231 (332)
T KOG1677|consen 157 LEELRLPS-SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHPYPVSRNPQPQSYG----LTASRSS 231 (332)
T ss_pred cccccccc-cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCCccccccccccccc----hhhcchh
Confidence 87654221 456677888999999999999999999999999999875321110000 000000 0000000
Q ss_pred C-cc-ccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCC
Q 014805 190 L-QY-AGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 267 (418)
Q Consensus 190 ~-p~-~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~ 267 (418)
+ .. ..+--...|..-...+-|..+...+.......... ...-........+.+++++.+++|.+ +++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~---- 301 (332)
T KOG1677|consen 232 LLNQQSKLQQPFAPSGLSESVLPRSSQQNLLPQGLRSSSS-----SHPSGSQENVNENGFRARPEQPECRS-MKSG---- 301 (332)
T ss_pred hccccccccccccccccccccCcCCccccccccccccccc-----cccccchhccccccCcCCCCCCccch-hccc----
Confidence 0 00 00000000100000011111100011110000000 00001122345778999999999999 9988
Q ss_pred CCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCC
Q 014805 268 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF 319 (418)
Q Consensus 268 G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f 319 (418)
...+ ++++++...|..|.++|+|+||..|+|
T Consensus 302 ---------~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
T KOG1677|consen 302 ---------ENRL------------LPLRPGPGACTLFSRYGSCKFGPLCKF 332 (332)
T ss_pred ---------cccc------------cCCCCCcccccccccccccCCCCcCCC
Confidence 1111 778999999999999999999999987
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.59 E-value=1.3e-15 Score=152.87 Aligned_cols=80 Identities=34% Similarity=0.774 Sum_probs=69.9
Q ss_pred CCCCCCCCCccchhhHhcCcCCC-CCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014805 245 QNLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 323 (418)
Q Consensus 245 ~~~Per~k~~~C~~f~~~G~C~~-G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~ 323 (418)
...++++++++|++|++.|.|+| |+.|+|+|+.++++... .+..++++.++|+++|.+|.++|.|+||.+|+|.|+.
T Consensus 124 ~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 124 ERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred ccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 35678899999999999999999 99999999999988432 2334568899999999999999999999999999998
Q ss_pred CCC
Q 014805 324 AGY 326 (418)
Q Consensus 324 ~~~ 326 (418)
...
T Consensus 202 ~~~ 204 (332)
T KOG1677|consen 202 PED 204 (332)
T ss_pred ccc
Confidence 744
No 3
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.55 E-value=2.1e-15 Score=141.86 Aligned_cols=132 Identities=31% Similarity=0.806 Sum_probs=111.0
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 014805 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (418)
Q Consensus 47 Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~ 126 (418)
.|....|+||..+|.|.+|..|+|.|...+. .+|..|+. |.|.+.+.|..+|..+.
T Consensus 203 spsavycryynangicgkgaacrfvheptrk---------------ticpkfln-grcnkaedcnlsheldp-------- 258 (377)
T KOG1492|consen 203 SPSAVYCRYYNANGICGKGAACRFVHEPTRK---------------TICPKFLN-GRCNKAEDCNLSHELDP-------- 258 (377)
T ss_pred CCceeEEEEecCCCcccCCceeeeecccccc---------------ccChHHhc-CccCchhcCCcccccCc--------
Confidence 4566789999989999999999999998763 36999998 99999999999998763
Q ss_pred cccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCC
Q 014805 127 NILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMG 206 (418)
Q Consensus 127 ~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~ 206 (418)
.+.+.|+||+ .|.|. ..+|||.|....
T Consensus 259 --------rripacryfl-lgkcn-npncryvhihys------------------------------------------- 285 (377)
T KOG1492|consen 259 --------RRIPACRYFL-LGKCN-NPNCRYVHIHYS------------------------------------------- 285 (377)
T ss_pred --------cccchhhhhh-hccCC-CCCceEEEEeec-------------------------------------------
Confidence 2456899999 69997 589999998431
Q ss_pred CCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccc
Q 014805 207 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS 286 (418)
Q Consensus 207 ~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~ 286 (418)
...+.|..|.+.|+|..|..|+-.|
T Consensus 286 --------------------------------------------enapicfefakygfcelgtscknqh----------- 310 (377)
T KOG1492|consen 286 --------------------------------------------ENAPICFEFAKYGFCELGTSCKNQH----------- 310 (377)
T ss_pred --------------------------------------------CCCceeeeehhcceeccccccccce-----------
Confidence 1235699999999999999999999
Q ss_pred cCCCCCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014805 287 NIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 323 (418)
Q Consensus 287 ~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~ 323 (418)
...|.+|...|.|. .+.|.+.|..
T Consensus 311 ------------ilqctdyamfgscn-npqcslyhga 334 (377)
T KOG1492|consen 311 ------------ILQCTDYAMFGSCN-NPQCSLYHGA 334 (377)
T ss_pred ------------eeeecchhhhcCCC-CCcceeecce
Confidence 34799999999997 7899998874
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.52 E-value=1.5e-14 Score=144.69 Aligned_cols=144 Identities=29% Similarity=0.739 Sum_probs=117.7
Q ss_pred CCCCCCCCcccccc-CCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCc
Q 014805 46 ARPGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124 (418)
Q Consensus 46 ~Rp~~~~C~~f~rt-G~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v 124 (418)
+|-+...|.++.+. -.|.+|..|.+.|..... ..+..+|+||++ |.|+.||.|.|+|..+.
T Consensus 41 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~vcK~~l~-glC~kgD~C~Flhe~~~------ 102 (325)
T KOG1040|consen 41 DESGRATCEFNESREKPCERGPICPKSHNDVSD-----------SRGKVVCKHWLR-GLCKKGDQCEFLHEYDL------ 102 (325)
T ss_pred cccccchhcccccCCCCccCCCCCccccCCccc-----------cCCceeehhhhh-hhhhccCcCcchhhhhh------
Confidence 44456789888732 358899999999987531 125678999999 99999999999998742
Q ss_pred eecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCC
Q 014805 125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTY 204 (418)
Q Consensus 125 ~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y 204 (418)
.+.++|.||...|.|.+|.+|.|.|..+..
T Consensus 103 ----------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt---------------------------------------- 132 (325)
T KOG1040|consen 103 ----------TKMRECKFFSLFGECTNGKDCPYLHGDPQT---------------------------------------- 132 (325)
T ss_pred ----------cccccccccccccccccccCCcccCCChhh----------------------------------------
Confidence 145689999999999999999999996420
Q ss_pred CCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcc
Q 014805 205 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSA 284 (418)
Q Consensus 205 ~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~ 284 (418)
+..+|.+|.+ |+|+.|++|++.|-..
T Consensus 133 -----------------------------------------------~~k~c~~~~~-g~c~~g~~c~~~h~~~------ 158 (325)
T KOG1040|consen 133 -----------------------------------------------AIKKCKWYKE-GFCRGGPSCKKRHERK------ 158 (325)
T ss_pred -----------------------------------------------hhhccchhhh-ccCCCcchhhhhhhcc------
Confidence 2356999998 9999999999999432
Q ss_pred cccCCCCCCCCCCCccccccccccccCCCCCC-CCCCCCCCCCC
Q 014805 285 ASNIGPLGLPSRPGQAICSNYSMYGICKFGPT-CRFDHPYAGYP 327 (418)
Q Consensus 285 ~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~-C~f~Hp~~~~~ 327 (418)
.+|..|.. |+|+.|.. |.+.|+...++
T Consensus 159 ---------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~ 186 (325)
T KOG1040|consen 159 ---------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQP 186 (325)
T ss_pred ---------------cCCCchhh-hhccCCCCcccccCCCCCCC
Confidence 58999999 99999999 99999987764
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.51 E-value=1.2e-14 Score=145.41 Aligned_cols=154 Identities=24% Similarity=0.419 Sum_probs=126.0
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCce
Q 014805 46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVS 125 (418)
Q Consensus 46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~ 125 (418)
+..++.+|+||+| |.|..||.|.|+|..+.. +.+.|.||..+|.|..+.+|.|.|....
T Consensus 73 ~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-------------k~rec~ff~~~g~c~~~~~c~y~h~dpq------- 131 (325)
T KOG1040|consen 73 DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-------------KMRECKFFSLFGECTNGKDCPYLHGDPQ------- 131 (325)
T ss_pred ccCCceeehhhhh-hhhhccCcCcchhhhhhc-------------ccccccccccccccccccCCcccCCChh-------
Confidence 4678899999997 999999999999998543 3457999999999999999999998731
Q ss_pred ecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCC
Q 014805 126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYM 205 (418)
Q Consensus 126 ~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~ 205 (418)
...+.|.+|. .|+|+.|..|++.|...
T Consensus 132 ---------t~~k~c~~~~-~g~c~~g~~c~~~h~~~------------------------------------------- 158 (325)
T KOG1040|consen 132 ---------TAIKKCKWYK-EGFCRGGPSCKKRHERK------------------------------------------- 158 (325)
T ss_pred ---------hhhhccchhh-hccCCCcchhhhhhhcc-------------------------------------------
Confidence 1356899999 59999999999999943
Q ss_pred CCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCCC-cccCCCchhhhhcc
Q 014805 206 GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSA 284 (418)
Q Consensus 206 ~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~ 284 (418)
+.|..|.. |+|+.|.. |.+.|+...+....
T Consensus 159 ------------------------------------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~~ 189 (325)
T KOG1040|consen 159 ------------------------------------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQPPFH 189 (325)
T ss_pred ------------------------------------------------cCCCchhh-hhccCCCCcccccCCCCCCChhh
Confidence 22666766 99999999 99999887665543
Q ss_pred cccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805 285 ASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 285 ~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
. ......+.+.+..++..|.. ..+.....|.+.+....
T Consensus 190 ~--~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~ 227 (325)
T KOG1040|consen 190 Q--GSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE 227 (325)
T ss_pred c--cccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence 2 34445667888889999999 99999999999888643
No 6
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=99.34 E-value=1.3e-12 Score=128.99 Aligned_cols=200 Identities=25% Similarity=0.479 Sum_probs=115.9
Q ss_pred CCCccccccCCCCCCCC-CCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCc-----
Q 014805 51 PDCLFYRRTGLCGYGSN-CRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV----- 124 (418)
Q Consensus 51 ~~C~~f~rtG~C~~G~~-C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v----- 124 (418)
++|+.|+| |+|.+||+ |||+|+...... +..+...|.+|++ |.|. .++|||+|........-.
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V--------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkdql~ingrn 106 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQV--------SNGRVIACFDSQK-GRCS-RENCKYLHPPQHLKDQLKINGRN 106 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCCc--------cCCeEEEEecccc-CccC-cccceecCCChhhhhhhhhcccc
Confidence 58999998 99999998 999999764322 2234578999999 9998 789999998765432110
Q ss_pred --eecc------cCCCCccCCCCcc--CcCCCCCCCCCC-CccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccc
Q 014805 125 --SFNI------LGLPMRQDEKSCP--YYMRTGSCKFGV-ACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA 193 (418)
Q Consensus 125 --~~~~------~g~P~r~~~~~C~--~f~k~G~C~~G~-~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~ 193 (418)
.+.. .........++|. .|. .+.|.-|. .|+|.|......|..+
T Consensus 107 ~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~~Pg~~v------------------------ 161 (331)
T KOG2494|consen 107 NLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPPVPGGLV------------------------ 161 (331)
T ss_pred cHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccCCCCCCCC------------------------
Confidence 0000 0001112455666 555 46665554 4777776542111111
Q ss_pred cccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHhcCcCCCCC-Ccc
Q 014805 194 GIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA-DCK 272 (418)
Q Consensus 194 ~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~~G~C~~G~-~C~ 272 (418)
++.++...++|..........+ ....+......+.++|+- . .|.|..++ +|+
T Consensus 162 -------------------p~~~~p~~~~~~~g~p~v~~~~------~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~ 214 (331)
T KOG2494|consen 162 -------------------PADGLPTTPVFVPGGPGVPGPG------LVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQ 214 (331)
T ss_pred -------------------CCcCCCCCccccCCCCcccccc------cccccccccCCCCCCCcc-c-ccccccchhHHH
Confidence 1111111111111111000000 001112223345567777 3 48899887 599
Q ss_pred cCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805 273 FHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 273 f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
|+|+.+.+..... .....+|..|.+ |.|. -++|++.|....
T Consensus 215 f~~~~k~~~~~s~----------~~t~~~~~~~t~-~~~~-~en~~~~~~~~h 255 (331)
T KOG2494|consen 215 FAHPAKSIMIDSN----------DNTVEVCLRYTK-GRCE-TENCKYFHAPAH 255 (331)
T ss_pred HhhhhhhhhcccC----------CCcchhcccccc-ceec-hhcccccCchHH
Confidence 9998877664432 233668999998 9997 678999998654
No 7
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.25 E-value=6.6e-12 Score=118.44 Aligned_cols=114 Identities=26% Similarity=0.760 Sum_probs=95.0
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 014805 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP 170 (418)
Q Consensus 91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p 170 (418)
...-|+||...|.|-+|..|||.|... +..+|+.|+ +|.|...++|.+.|..+..
T Consensus 205 savycryynangicgkgaacrfvhept------------------rkticpkfl-ngrcnkaedcnlsheldpr------ 259 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHEPT------------------RKTICPKFL-NGRCNKAEDCNLSHELDPR------ 259 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeecccc------------------ccccChHHh-cCccCchhcCCcccccCcc------
Confidence 345799999999999999999999865 356999999 6999999999999985420
Q ss_pred CCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCC
Q 014805 171 LTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPER 250 (418)
Q Consensus 171 ~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per 250 (418)
T Consensus 260 -------------------------------------------------------------------------------- 259 (377)
T KOG1492|consen 260 -------------------------------------------------------------------------------- 259 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCC
Q 014805 251 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 329 (418)
Q Consensus 251 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~~~ 329 (418)
..+.||||+- |.|. .++|+|.|... ...+.+|..|.++|+|..|..|+-.|-+...-|.
T Consensus 260 -ripacryfll-gkcn-npncryvhihy-----------------senapicfefakygfcelgtscknqhilqctdya 318 (377)
T KOG1492|consen 260 -RIPACRYFLL-GKCN-NPNCRYVHIHY-----------------SENAPICFEFAKYGFCELGTSCKNQHILQCTDYA 318 (377)
T ss_pred -ccchhhhhhh-ccCC-CCCceEEEEee-----------------cCCCceeeeehhcceeccccccccceeeeecchh
Confidence 2345999998 9997 78999999432 2236799999999999999999999998777664
No 8
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.13 E-value=2.4e-10 Score=111.80 Aligned_cols=193 Identities=16% Similarity=0.250 Sum_probs=132.9
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCC-C---
Q 014805 48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG-P--- 123 (418)
Q Consensus 48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~-~--- 123 (418)
++++.|+.-...+.|++++.|.|+|......- ...+.+.++.-|..|+.-|.|.++.+|-|.|-.-...+. +
T Consensus 113 ~kt~~l~ss~~~~~~~~p~~n~fahs~~issl----~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~ 188 (351)
T COG5063 113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISSL----AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQ 188 (351)
T ss_pred ccchhhhccccccccccCCCCcCCCccccccc----cccCccccccceeEEecCCccccccccccccccccccCcchhhc
Confidence 34667776544489999999999999765321 223345567789999999999999999998855322110 0
Q ss_pred -------------ceecccCCC--------------CccC-CCCccCcCCCCCCCC---CCCccCC---CCCCCCCCCCC
Q 014805 124 -------------VSFNILGLP--------------MRQD-EKSCPYYMRTGSCKF---GVACKFH---HPQPSSLGTAL 169 (418)
Q Consensus 124 -------------v~~~~~g~P--------------~r~~-~~~C~~f~k~G~C~~---G~~Crf~---H~~~~~~~~~~ 169 (418)
...+....| ++.. ..+|.-|...|.|++ |+.|.|+ |......
T Consensus 189 rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~---- 264 (351)
T COG5063 189 RKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELK---- 264 (351)
T ss_pred cCcccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccc----
Confidence 001111111 1111 257999998999999 9999999 8843210
Q ss_pred CCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCC
Q 014805 170 PLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPE 249 (418)
Q Consensus 170 p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Pe 249 (418)
....-.
T Consensus 265 --------------------------------------------------------------------------~k~k~~ 270 (351)
T COG5063 265 --------------------------------------------------------------------------SKKKKQ 270 (351)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000111
Q ss_pred CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 014805 250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 328 (418)
Q Consensus 250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~~~ 328 (418)
-+++..|..|.+.|+|+||..|.|.|+-++...... ..-+.+...+|+.++++|.|++|-+|.|.|....+-.
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~------~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~ 343 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE------EASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDF 343 (351)
T ss_pred ccccCCccchhhcccCccccccccccCChhhccccc------cccccccccccccccccCccCCCCchhhccccchhhh
Confidence 257888999999999999999999999876543221 1113455679999999999999999999998766543
No 9
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.02 E-value=6.5e-10 Score=108.78 Aligned_cols=179 Identities=20% Similarity=0.321 Sum_probs=112.7
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 014805 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP 170 (418)
Q Consensus 91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p 170 (418)
++++|+.-..-+.|.+++.|.|+|....... ...+.+.+++.|..|+..|.|+++.+|-|.|..-.... ..+
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl-------~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~-~q~ 185 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSL-------AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDIN-LQP 185 (351)
T ss_pred cchhhhccccccccccCCCCcCCCccccccc-------cccCccccccceeEEecCCccccccccccccccccccC-cch
Confidence 5567776544488999999999998753221 12344667788999998999999999999987443211 001
Q ss_pred CCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCC
Q 014805 171 LTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPER 250 (418)
Q Consensus 171 ~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per 250 (418)
.++.-|.++. +++.. +++-+. ...+.- ......+++..+.+
T Consensus 186 ----------l~~rkpks~~-----------~~~s~---------t~~kes----~a~P~~-----~~~~~~~e~n~~L~ 226 (351)
T COG5063 186 ----------LSQRKPKSGK-----------NCTSY---------TLGKES----DAHPHD-----ELIYQKQEQNKPLY 226 (351)
T ss_pred ----------hhccCcccCc-----------Ccccc---------cccccc----ccCchh-----hhhhhhhhccchhh
Confidence 1111111110 00000 000000 000000 00000123333333
Q ss_pred CCC--ccchhhHhcCcCCC---CCCcccC---CCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014805 251 PDQ--PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 322 (418)
Q Consensus 251 ~k~--~~C~~f~~~G~C~~---G~~C~f~---H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp 322 (418)
++ .+|.-|...|.|++ |..|+|+ |+..++.. .+.-..+++++|.+|..-|+|+||.+|.|.|.
T Consensus 227 -kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~--------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 227 -KTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS--------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred -cCCHHHhhccCcCCCCccccccccccccccccccccccc--------cccccccccCCccchhhcccCccccccccccC
Confidence 44 78999999999999 9999999 98665443 34556788999999999999999999999999
Q ss_pred CCC
Q 014805 323 YAG 325 (418)
Q Consensus 323 ~~~ 325 (418)
...
T Consensus 298 d~~ 300 (351)
T COG5063 298 DDS 300 (351)
T ss_pred Chh
Confidence 754
No 10
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=99.01 E-value=2.9e-09 Score=104.86 Aligned_cols=151 Identities=28% Similarity=0.600 Sum_probs=113.6
Q ss_pred CCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecc
Q 014805 49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI 128 (418)
Q Consensus 49 ~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~ 128 (418)
.+..|.+++-.+.+...-+|++.|...... ...+|++|++ |.|+.+..|.|+|..+...
T Consensus 73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~~------------s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~-------- 131 (285)
T COG5084 73 NTVACISRNFNSIRGSRLSTPNNHVNPVLS------------SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS-------- 131 (285)
T ss_pred cccccccccccCCccccccCCccccCcccc------------CCcccchhcc-ccCcCCCccccccCCCccc--------
Confidence 456799998656666666899999865321 2357999999 9999999999999977321
Q ss_pred cCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCC
Q 014805 129 LGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNI 208 (418)
Q Consensus 129 ~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~ 208 (418)
.....|++|...|.|..|..|.+.|.++...
T Consensus 132 ------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~------------------------------------------- 162 (285)
T COG5084 132 ------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDSF------------------------------------------- 162 (285)
T ss_pred ------ccCCCcccccccceeccCCCCCccccCcccc-------------------------------------------
Confidence 1256899996679999999999999974310
Q ss_pred CCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCCCCccchhhHh--cCcCCCCCCcccCCCchhhhhcccc
Q 014805 209 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN--TGTCKYGADCKFHHPKERIAQSAAS 286 (418)
Q Consensus 209 ~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~k~~~C~~f~~--~G~C~~G~~C~f~H~~~~~~~~~~~ 286 (418)
...|.+|.+ .++|+.|..|++.|....+
T Consensus 163 --------------------------------------------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~------ 192 (285)
T COG5084 163 --------------------------------------------AGNCDQYSGATYGFCPLGASCKFSHTLKRV------ 192 (285)
T ss_pred --------------------------------------------cccccccCcccccccCCCCccccccccccc------
Confidence 112444442 5999999999999965322
Q ss_pred cCCCCCCCCCCCccccccccccccCCCCCC--------------CCCCCCCCCCCCC
Q 014805 287 NIGPLGLPSRPGQAICSNYSMYGICKFGPT--------------CRFDHPYAGYPIN 329 (418)
Q Consensus 287 ~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~--------------C~f~Hp~~~~~~~ 329 (418)
.+...+|..|.. ++|+-|.. |++.||......+
T Consensus 193 ---------~~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~iq 239 (285)
T COG5084 193 ---------SYGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNIDIQ 239 (285)
T ss_pred ---------cccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCCcC
Confidence 233448999999 99999998 9999998766543
No 11
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.73 E-value=2.1e-08 Score=98.88 Aligned_cols=88 Identities=31% Similarity=0.680 Sum_probs=72.2
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceec
Q 014805 48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127 (418)
Q Consensus 48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~ 127 (418)
...++|++|++ |.|+.|..|.|+|..+.... ..+.|++|...|.|..|..|.|.|.....
T Consensus 102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-----------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~-------- 161 (285)
T COG5084 102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-----------QGPPCRSFSLKGSCSSGPSCGYSHIDPDS-------- 161 (285)
T ss_pred cCCcccchhcc-ccCcCCCccccccCCCcccc-----------cCCCcccccccceeccCCCCCccccCccc--------
Confidence 45689999997 99999999999999886421 14579999555999999999999986421
Q ss_pred ccCCCCccCCCCccCcCC--CCCCCCCCCccCCCCCCC
Q 014805 128 ILGLPMRQDEKSCPYYMR--TGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 128 ~~g~P~r~~~~~C~~f~k--~G~C~~G~~Crf~H~~~~ 163 (418)
....|.+|.+ .++|++|..|+|.|....
T Consensus 162 --------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 162 --------FAGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred --------ccccccccCcccccccCCCCcccccccccc
Confidence 3457888885 699999999999999753
No 12
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.60 E-value=3.5e-07 Score=95.91 Aligned_cols=58 Identities=24% Similarity=0.556 Sum_probs=50.0
Q ss_pred ccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805 254 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 326 (418)
Q Consensus 254 ~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~ 326 (418)
..|..|.+ |.|+.|+.|.|+|+.-|-. |+| -+|+++.|++- |+|+. .-|-|+|-..+|
T Consensus 237 tpCPefrk-G~C~rGD~CEyaHgvfEcw------LHP----a~YRT~~CkDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 237 TPCPEFRK-GSCERGDSCEYAHGVFECW------LHP----ARYRTRKCKDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred ccCccccc-CCCCCCCccccccceehhh------cCH----HHhccccccCC---CCCcc-ceEeeecChHHh
Confidence 45999999 9999999999999886643 444 48999999998 89997 889999998877
No 13
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.1e-07 Score=95.95 Aligned_cols=82 Identities=26% Similarity=0.693 Sum_probs=62.6
Q ss_pred CCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccC
Q 014805 51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG 130 (418)
Q Consensus 51 ~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g 130 (418)
++|.||+ ...|++++.|.|.|-..... ...+|++|+..-.|+ +.|+|.|..-..
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~------------n~t~C~~w~~~~~C~--k~C~YRHSe~~~----------- 57 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALG------------NETVCTLWQEGRCCR--KVCRYRHSEIDK----------- 57 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhc------------CcchhhhhhhcCccc--ccccchhhHHhh-----------
Confidence 5799999 59999999999999976531 234799999844566 489999985421
Q ss_pred CCCccCCCCccCcCCCCC-CCCCCCccCCCCCCC
Q 014805 131 LPMRQDEKSCPYYMRTGS-CKFGVACKFHHPQPS 163 (418)
Q Consensus 131 ~P~r~~~~~C~~f~k~G~-C~~G~~Crf~H~~~~ 163 (418)
......|.++.+ +. |. .++|-|.|..+.
T Consensus 58 ---kr~e~~CYwe~~-p~gC~-k~~CgfRH~~pP 86 (667)
T KOG4791|consen 58 ---KRSEIPCYWENQ-PTGCQ-KLNCGFRHNRPP 86 (667)
T ss_pred ---hcCcccceeecC-CCccC-CCccccccCCCc
Confidence 124568999995 66 98 589999997643
No 14
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.33 E-value=1.2e-07 Score=61.43 Aligned_cols=27 Identities=41% Similarity=0.907 Sum_probs=21.9
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCcc
Q 014805 48 PGEPDCLFYRRTGLCGYGSNCRFNHPA 74 (418)
Q Consensus 48 p~~~~C~~f~rtG~C~~G~~C~F~H~~ 74 (418)
+++++|++|+++|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578999999999999999999999973
No 15
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.31 E-value=2.8e-07 Score=59.74 Aligned_cols=27 Identities=41% Similarity=1.038 Sum_probs=21.8
Q ss_pred CCCccchhhHhcCcCCCCCCcccCCCc
Q 014805 251 PDQPDCRYYMNTGTCKYGADCKFHHPK 277 (418)
Q Consensus 251 ~k~~~C~~f~~~G~C~~G~~C~f~H~~ 277 (418)
+++.+|++|+++|.|++|++|+|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 478899999999999999999999964
No 16
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=4.7e-07 Score=93.41 Aligned_cols=128 Identities=18% Similarity=0.428 Sum_probs=86.8
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 014805 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL 171 (418)
Q Consensus 92 ~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~ 171 (418)
.+.|.||+. -.|++++.|.|.|...... ....|.+|+..--|+ +.|+|.|.+....
T Consensus 3 ~~dcyff~y-s~cKk~d~c~~rh~E~al~---------------n~t~C~~w~~~~~C~--k~C~YRHSe~~~k------ 58 (667)
T KOG4791|consen 3 GEDCYFFFY-STCKKGDSCPFRHCEAALG---------------NETVCTLWQEGRCCR--KVCRYRHSEIDKK------ 58 (667)
T ss_pred cccchhhhh-hhhhccCcCcchhhHHHhc---------------CcchhhhhhhcCccc--ccccchhhHHhhh------
Confidence 357999998 9999999999999876432 245899999644455 4999999964311
Q ss_pred CCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCcccccCCCCCCCCcccccccccccCCCCCCC
Q 014805 172 TGNASLGSMGSSVLPSSGLQYAGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERP 251 (418)
Q Consensus 172 ~~~~~~~~~~~~~~pss~~p~~~~vp~~~w~~y~~~~~p~~~~~~~gs~~~y~~~~~~~~~s~~q~~~~s~~~~~~Per~ 251 (418)
-
T Consensus 59 -------------------------------------------------------------------------------r 59 (667)
T KOG4791|consen 59 -------------------------------------------------------------------------------R 59 (667)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCccchhhHhcCc-CCCCCCcccCCCc---hhhhhccc----ccCCCCCC--C---CCCCccccccccccccCCCCCCCC
Q 014805 252 DQPDCRYYMNTGT-CKYGADCKFHHPK---ERIAQSAA----SNIGPLGL--P---SRPGQAICSNYSMYGICKFGPTCR 318 (418)
Q Consensus 252 k~~~C~~f~~~G~-C~~G~~C~f~H~~---~~~~~~~~----~~~~p~~l--p---~r~~~~~C~~y~~~G~C~~G~~C~ 318 (418)
...+|.|+.+ +. |. .++|-|.|-. ..+..... ..+++..+ + +.---.+|-+|.+ |+|..|+.|.
T Consensus 60 ~e~~CYwe~~-p~gC~-k~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~~K-~~e~~~D~~s 136 (667)
T KOG4791|consen 60 SEIPCYWENQ-PTGCQ-KLNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRSVK-KVESSEDVPS 136 (667)
T ss_pred CcccceeecC-CCccC-CCccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHHhh-hhhhhccccc
Confidence 2356999998 66 97 6899999932 22221110 11111111 0 1111358999999 9999999999
Q ss_pred CCCCCCC
Q 014805 319 FDHPYAG 325 (418)
Q Consensus 319 f~Hp~~~ 325 (418)
|.|+...
T Consensus 137 ~Lh~P~A 143 (667)
T KOG4791|consen 137 PLHPPVA 143 (667)
T ss_pred cCCCCcc
Confidence 9999743
No 17
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.17 E-value=6.8e-07 Score=88.84 Aligned_cols=67 Identities=27% Similarity=0.595 Sum_probs=50.4
Q ss_pred cccccccccccCCCCCC-CCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 014805 93 PDCGYYLKTGTCKYGST-CKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL 171 (418)
Q Consensus 93 ~~Ck~flktG~Ck~G~~-Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~~~~~~~p~ 171 (418)
.+||.|++ |.|++|+. |||.|+.....+.. -+-..|.+|+| |.|.+ ++|||.|+.+.. .+.+.+
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~~-----------g~v~aC~Ds~k-grCsR-~nCkylHpp~hl-kdql~i 102 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQVSN-----------GRVIACFDSQK-GRCSR-ENCKYLHPPQHL-KDQLKI 102 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCCccC-----------CeEEEEecccc-CccCc-ccceecCCChhh-hhhhhh
Confidence 58999999 99999999 99999987433221 12347999995 99995 789999997653 334555
Q ss_pred CCC
Q 014805 172 TGN 174 (418)
Q Consensus 172 ~~~ 174 (418)
++.
T Consensus 103 ngr 105 (331)
T KOG2494|consen 103 NGR 105 (331)
T ss_pred ccc
Confidence 544
No 18
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.00 E-value=5.1e-06 Score=87.36 Aligned_cols=86 Identities=24% Similarity=0.467 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCccccc-ccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCC
Q 014805 60 GLCGYGSNCRFNHPAYAA-QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK 138 (418)
Q Consensus 60 G~C~~G~~C~F~H~~~~~-~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~ 138 (418)
+.|.-+..|.|+|+.... ...-.+-.| .-..|..|-+ |.|+.||.|.|.|..-+. .=.|.++++.
T Consensus 207 ~~shDwteCPf~HpgEkARRRDPRkyhY----s~tpCPefrk-G~C~rGD~CEyaHgvfEc---------wLHPa~YRT~ 272 (528)
T KOG1595|consen 207 PRSHDWTECPFAHPGEKARRRDPRKYHY----SSTPCPEFRK-GSCERGDSCEYAHGVFEC---------WLHPARYRTR 272 (528)
T ss_pred ccCCCcccCCccCCCcccccCCcccccc----cCccCccccc-CCCCCCCccccccceehh---------hcCHHHhccc
Confidence 457778899999975432 111111122 3357999998 999999999999987543 2236688999
Q ss_pred CccCcCCCCCCCCCCCccCCCCCCC
Q 014805 139 SCPYYMRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 139 ~C~~f~k~G~C~~G~~Crf~H~~~~ 163 (418)
.|++ .|.|++ .-|-|+|....
T Consensus 273 ~CkD---g~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 273 KCKD---GGYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred cccC---CCCCcc-ceEeeecChHH
Confidence 9998 589998 89999999764
No 19
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=97.72 E-value=7.5e-05 Score=80.24 Aligned_cols=81 Identities=15% Similarity=0.378 Sum_probs=43.3
Q ss_pred CCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCC--CCCCceecccCCCCccCCCCccCc
Q 014805 66 SNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN--GAGPVSFNILGLPMRQDEKSCPYY 143 (418)
Q Consensus 66 ~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~--~~~~v~~~~~g~P~r~~~~~C~~f 143 (418)
..|.+.|.......+. ..-...|+||.. |. +..|.|.|+.... .+.+. ...+-+.-...+.|.|=
T Consensus 525 ~~s~s~~s~~~~~ltk-------~k~l~~Cky~~~---Ct-~a~Ce~~HPtaa~~~~s~p~--k~fa~~~~ks~p~Ck~~ 591 (681)
T KOG3702|consen 525 PDSLSRHSEKKNELTK-------AKILTRCKYGPA---CT-SAECEFAHPTAAENAKSLPN--KKFASKCLKSHPGCKFG 591 (681)
T ss_pred CcchhhCccccccccc-------ceeeccccCCCc---CC-chhhhhcCCcchhhhhcccc--ccccccceecccccccc
Confidence 3578888865421111 112346999988 98 8999999987641 11110 00000111112345542
Q ss_pred CCCCCCCCCCCccCCCCCCC
Q 014805 144 MRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 144 ~k~G~C~~G~~Crf~H~~~~ 163 (418)
. .|. -.+|.|.|....
T Consensus 592 ~---kCt-asDC~~sH~~~~ 607 (681)
T KOG3702|consen 592 K---KCT-ASDCNYSHAGRR 607 (681)
T ss_pred c---ccc-cccCcccccCCC
Confidence 2 365 356889998664
No 20
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.72 E-value=2.5e-05 Score=49.81 Aligned_cols=26 Identities=38% Similarity=1.027 Sum_probs=22.7
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCcc
Q 014805 48 PGEPDCLFYRRTGLCGYGSNCRFNHPA 74 (418)
Q Consensus 48 p~~~~C~~f~rtG~C~~G~~C~F~H~~ 74 (418)
+++.+|++|. +|.|.+|++|+|+|+.
T Consensus 2 ~k~~~C~~~~-~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFK-RGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence 4677999995 6999999999999973
No 21
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.67 E-value=7.4e-06 Score=80.37 Aligned_cols=72 Identities=25% Similarity=0.672 Sum_probs=49.6
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCC-----------------------CCcccccccccccc-
Q 014805 46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELP-----------------------ERNGQPDCGYYLKT- 101 (418)
Q Consensus 46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~p-----------------------er~~~~~Ck~flkt- 101 (418)
.-|+..+|.||.. |.|..|+.|+|+|+............|+ -....++|+||+..
T Consensus 88 vDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv 166 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV 166 (343)
T ss_pred CCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence 4577899999995 9999999999999976532211011111 11123589999862
Q ss_pred -----c---cCCCCC-CCCCCCCCCC
Q 014805 102 -----G---TCKYGS-TCKYHHPKDR 118 (418)
Q Consensus 102 -----G---~Ck~G~-~Crf~H~~~~ 118 (418)
| .|.+|. .|-|.|....
T Consensus 167 E~~kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 167 ENGKYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred hcCCccceeECCCCCCeeeeeecCCc
Confidence 2 499874 8999998764
No 22
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.63 E-value=3.8e-05 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.911 Sum_probs=22.4
Q ss_pred CCccccccccccccCCCCCCCCCCCCC
Q 014805 297 PGQAICSNYSMYGICKFGPTCRFDHPY 323 (418)
Q Consensus 297 ~~~~~C~~y~~~G~C~~G~~C~f~Hp~ 323 (418)
+++.+|++| .+|.|.+|..|+|.|..
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 457799999 55999999999999973
No 23
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.34 E-value=6.3e-05 Score=78.56 Aligned_cols=60 Identities=23% Similarity=0.614 Sum_probs=46.9
Q ss_pred cccccccccc--ccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCC
Q 014805 92 QPDCGYYLKT--GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160 (418)
Q Consensus 92 ~~~Ck~flkt--G~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~ 160 (418)
..+|.-...+ -.|.||++|+|.|+.+...+.. + ....+.|++|...|+|++|-+|||.-.
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--------~-~Dig~~Cp~f~s~G~Cp~G~~CRFl~a 137 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--------A-PDIGPSCPVFESLGFCPYGFKCRFLGA 137 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhcc--------C-cccCCccceeeccccCCccceeehhhc
Confidence 3579999885 3799999999999987654332 1 123468999999999999999999643
No 24
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.30 E-value=0.00014 Score=76.11 Aligned_cols=60 Identities=30% Similarity=0.760 Sum_probs=49.7
Q ss_pred CCccchhhHhc--CcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCC
Q 014805 252 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 321 (418)
Q Consensus 252 k~~~C~~f~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~H 321 (418)
...+|.-.... -.|.||++|+|.|+.+.........|.+ -|..|...|+|+||-+|+|.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~----------~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGP----------SCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCC----------ccceeeccccCCccceeehhh
Confidence 35689999885 3799999999999987766655555555 799999999999999999953
No 25
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.02 E-value=0.00026 Score=69.79 Aligned_cols=78 Identities=27% Similarity=0.626 Sum_probs=54.0
Q ss_pred CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCC-------------------CCCCCCCCcccccccc----
Q 014805 250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP-------------------LGLPSRPGQAICSNYS---- 306 (418)
Q Consensus 250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p-------------------~~lp~r~~~~~C~~y~---- 306 (418)
.|+..+|-+|.. |.|..|+.|+|+|.....+...-..|-+ -+-|.--...+|.||.
T Consensus 89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 468899999998 9999999999999876555443222211 1112222345999996
Q ss_pred --cccc---CCCCC-CCCCCCCCCCCCCCCC
Q 014805 307 --MYGI---CKFGP-TCRFDHPYAGYPINYG 331 (418)
Q Consensus 307 --~~G~---C~~G~-~C~f~Hp~~~~~~~~~ 331 (418)
+||+ |++|- .|.|.|-++ ++|-
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP---~GyV 195 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALP---EGYV 195 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCC---cchh
Confidence 4564 99987 799999754 5454
No 26
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=96.88 E-value=0.0011 Score=71.53 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCccccccc--cccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCC
Q 014805 61 LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG--YYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK 138 (418)
Q Consensus 61 ~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck--~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~ 138 (418)
.|..+.+|.|.|+.-+..... ..+.|. +-..+-.|. ...|.+.|......... .....
T Consensus 486 ~~~estrEe~~~~~~r~~~~~---------rk~s~p~i~~~~~~~~s-~~~s~s~~s~~~~~ltk----------~k~l~ 545 (681)
T KOG3702|consen 486 PVTESTREEFVPPTLRTGRPL---------RKASQPTIFVANGHGGS-NPDSLSRHSEKKNELTK----------AKILT 545 (681)
T ss_pred cccccccccccCcccccCCcc---------cccCCCceecccccccC-CCcchhhCccccccccc----------ceeec
Confidence 466778899999965432211 112233 111111244 46689999876433221 11235
Q ss_pred CccCcCCCCCCCCCCCccCCCCCCC
Q 014805 139 SCPYYMRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 139 ~C~~f~k~G~C~~G~~Crf~H~~~~ 163 (418)
.|.+|.. |. +..|.|+|+...
T Consensus 546 ~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 546 RCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred cccCCCc---CC-chhhhhcCCcch
Confidence 7999985 98 899999999654
No 27
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.68 E-value=0.00049 Score=66.00 Aligned_cols=73 Identities=26% Similarity=0.642 Sum_probs=50.1
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcccccccc---------cc-cccCC--CCc---cccccccccc---cc----
Q 014805 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA---------QY-REELP--ERN---GQPDCGYYLK---TG---- 102 (418)
Q Consensus 45 p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~---------~~-~~~~p--er~---~~~~Ck~flk---tG---- 102 (418)
-+-|++.+|..|+ .+.|..|+.|+|+|+....... +. .+..| +++ ...+|+||+. +|
T Consensus 80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw 158 (299)
T COG5252 80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW 158 (299)
T ss_pred ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence 3457889999999 5999999999999996543211 10 11122 121 2358999975 22
Q ss_pred --cCCCC-CCCCCCCCCCC
Q 014805 103 --TCKYG-STCKYHHPKDR 118 (418)
Q Consensus 103 --~Ck~G-~~Crf~H~~~~ 118 (418)
.|.+| ..|-|.|....
T Consensus 159 ~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 159 GWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeeCCCCCceeeeeeccCc
Confidence 49887 68999998764
No 28
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.002 Score=61.87 Aligned_cols=78 Identities=32% Similarity=0.676 Sum_probs=55.1
Q ss_pred CCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccC----------CCCC-CCCCCCccccccccc------ccc--
Q 014805 250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI----------GPLG-LPSRPGQAICSNYSM------YGI-- 310 (418)
Q Consensus 250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~----------~p~~-lp~r~~~~~C~~y~~------~G~-- 310 (418)
.+++.+|-.|.. +.|..|+.|.|+|+..+.+...-..| -|++ .|.-..-.+|.||.. ||+
T Consensus 82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W 160 (299)
T COG5252 82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW 160 (299)
T ss_pred CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence 468899999998 99999999999999887775543211 1121 233334569999863 443
Q ss_pred -CCCC-CCCCCCCCCCCCCCCCC
Q 014805 311 -CKFG-PTCRFDHPYAGYPINYG 331 (418)
Q Consensus 311 -C~~G-~~C~f~Hp~~~~~~~~~ 331 (418)
|++| .+|-|.|-+ |++|-
T Consensus 161 ~CPng~~~C~y~H~L---p~GyV 180 (299)
T COG5252 161 TCPNGNMRCSYIHKL---PDGYV 180 (299)
T ss_pred eCCCCCceeeeeecc---Cccce
Confidence 9998 579999975 45553
No 29
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.14 E-value=0.0028 Score=65.06 Aligned_cols=30 Identities=30% Similarity=1.021 Sum_probs=25.4
Q ss_pred CCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 87 per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
|.-..+.+|+||+. |.|+|+++|||+|...
T Consensus 135 PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 135 PTHESMKPCKFFLE-GRCRFGENCRFSHGLD 164 (486)
T ss_pred CcchhhccchHhhc-cccccCcccccccCcc
Confidence 44445678999998 9999999999999875
No 30
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.14 E-value=0.0034 Score=37.40 Aligned_cols=19 Identities=47% Similarity=1.106 Sum_probs=17.1
Q ss_pred CCccccccCCCCCCCCCCCCCc
Q 014805 52 DCLFYRRTGLCGYGSNCRFNHP 73 (418)
Q Consensus 52 ~C~~f~rtG~C~~G~~C~F~H~ 73 (418)
.|+||.. |++|++|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4999885 999999999996
No 31
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.12 E-value=0.0031 Score=64.75 Aligned_cols=31 Identities=32% Similarity=0.956 Sum_probs=26.4
Q ss_pred CCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805 131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (418)
Q Consensus 131 ~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~ 162 (418)
.|......+|+||+ .|.|+|+.+|||+|...
T Consensus 134 ~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 134 TPTHESMKPCKFFL-EGRCRFGENCRFSHGLD 164 (486)
T ss_pred cCcchhhccchHhh-ccccccCcccccccCcc
Confidence 35455678999999 69999999999999965
No 32
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.09 E-value=0.0035 Score=37.35 Aligned_cols=19 Identities=32% Similarity=0.990 Sum_probs=16.9
Q ss_pred ccccccccccCCCCCCCCCCCC
Q 014805 94 DCGYYLKTGTCKYGSTCKYHHP 115 (418)
Q Consensus 94 ~Ck~flktG~Ck~G~~Crf~H~ 115 (418)
.|+||.. |+++++|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 4999876 999999999995
No 33
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.04 E-value=0.0073 Score=56.80 Aligned_cols=27 Identities=37% Similarity=0.838 Sum_probs=24.5
Q ss_pred cccccccccccCCCCCCCCCCCCCCCC
Q 014805 93 PDCGYYLKTGTCKYGSTCKYHHPKDRN 119 (418)
Q Consensus 93 ~~Ck~flktG~Ck~G~~Crf~H~~~~~ 119 (418)
.+|+.|..||.|-||+.|+|+|.++..
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhhhh
Confidence 379999999999999999999998743
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.60 E-value=0.012 Score=55.46 Aligned_cols=30 Identities=27% Similarity=0.777 Sum_probs=25.9
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCC
Q 014805 296 RPGQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 296 r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
.+.-.+|+.|..+|+|-||+.|+|.|...-
T Consensus 138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred ecCcccccchhhcccccCCchhhhhhhhhh
Confidence 334569999999999999999999999763
No 35
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.067 Score=53.22 Aligned_cols=26 Identities=38% Similarity=0.889 Sum_probs=24.1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC
Q 014805 94 DCGYYLKTGTCKYGSTCKYHHPKDRN 119 (418)
Q Consensus 94 ~Ck~flktG~Ck~G~~Crf~H~~~~~ 119 (418)
+|+.|-.||.|-||+.|+|+|++...
T Consensus 188 icKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 188 ICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred hhhhhHhhCcccccchhhhhhhhhhc
Confidence 79999999999999999999998754
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=0.09 Score=53.84 Aligned_cols=24 Identities=42% Similarity=1.030 Sum_probs=22.8
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q 014805 93 PDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 93 ~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
.+|+||++ |.|+||+.|||.|...
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCc
Confidence 58999999 9999999999999987
No 37
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.1 Score=51.93 Aligned_cols=27 Identities=33% Similarity=0.875 Sum_probs=24.6
Q ss_pred CccccccccccccCCCCCCCCCCCCCC
Q 014805 298 GQAICSNYSMYGICKFGPTCRFDHPYA 324 (418)
Q Consensus 298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~~ 324 (418)
..-+|+.|..||+|-||..|+|.|...
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhh
Confidence 345999999999999999999999975
No 38
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=88.84 E-value=0.24 Score=31.06 Aligned_cols=22 Identities=36% Similarity=0.942 Sum_probs=18.7
Q ss_pred cccccccccccCCCCCCCCCCCC
Q 014805 93 PDCGYYLKTGTCKYGSTCKYHHP 115 (418)
Q Consensus 93 ~~Ck~flktG~Ck~G~~Crf~H~ 115 (418)
++|.|-++.|.|. .+.|.|.|-
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 3699999966997 789999995
No 39
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=86.17 E-value=0.26 Score=48.19 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=25.6
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCC
Q 014805 295 SRPGQAICSNYSMYGICKFGPTCRFDHPY 323 (418)
Q Consensus 295 ~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~ 323 (418)
.+++...|..|.. +.|.+|..|.|.|..
T Consensus 148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 148 TDFREAICGQFER-TECSRGGACNFMHVK 175 (260)
T ss_pred Cchhhhhhccccc-ccCCCCCcCcchhhh
Confidence 5677889999999 799999999999997
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.74 E-value=0.31 Score=49.95 Aligned_cols=25 Identities=44% Similarity=1.026 Sum_probs=23.5
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q 014805 300 AICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 300 ~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
.+|++|.+ |+|+||.+|+|.|....
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 79999999 99999999999999873
No 41
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=83.07 E-value=0.89 Score=28.51 Aligned_cols=22 Identities=36% Similarity=0.939 Sum_probs=18.3
Q ss_pred CCccCcCCCCCCCCCCCccCCCC
Q 014805 138 KSCPYYMRTGSCKFGVACKFHHP 160 (418)
Q Consensus 138 ~~C~~f~k~G~C~~G~~Crf~H~ 160 (418)
++|+|-++.|.|. -+.|.|.|.
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeC-CCCCCcccc
Confidence 3799999766997 479999996
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=75.69 E-value=2.4 Score=43.33 Aligned_cols=32 Identities=31% Similarity=0.734 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCccccccCCCCCCCCCCCCCccc
Q 014805 43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY 75 (418)
Q Consensus 43 ~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~ 75 (418)
+|=.|-.--+|.||.+ |.|++|+.|.|+|...
T Consensus 154 p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 154 PYYKRNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred ccccCCCCccccceee-ccccccccccccccCC
Confidence 3445555679999996 9999999999999965
No 43
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=65.87 E-value=5.9 Score=38.99 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCccc
Q 014805 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAY 75 (418)
Q Consensus 45 p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~ 75 (418)
-.+..+..|..|.+ +.|.+|..|.|.|...
T Consensus 147 vT~~rea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 147 VTDFREAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred cCchhhhhhccccc-ccCCCCCcCcchhhhh
Confidence 45677789999997 7999999999999964
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=65.33 E-value=3.4 Score=42.29 Aligned_cols=28 Identities=43% Similarity=0.997 Sum_probs=24.2
Q ss_pred CccccccccccccccCCCCCCCCCCCCCC
Q 014805 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 89 r~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
+....+|.||.+ |.|++|+.|.|.|++.
T Consensus 158 rn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 158 RNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred CCCCccccceee-ccccccccccccccCC
Confidence 334558999999 9999999999999986
No 45
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=25.58 E-value=20 Score=36.79 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=26.6
Q ss_pred CCCCCCCC-CCCccccccCCCCCCCCCCCCCccccc
Q 014805 43 PYPARPGE-PDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (418)
Q Consensus 43 ~~p~Rp~~-~~C~~f~rtG~C~~G~~C~F~H~~~~~ 77 (418)
.+..-||+ ..|.+|+|.-.|.+++ |-|+|.....
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~-CMyLHEpg~e 228 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPD-CMYLHEPGPE 228 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCC-eeeecCCCcc
Confidence 34455665 6899999988899886 9999997643
No 46
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=23.43 E-value=72 Score=34.29 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCCCccchhhHhcCcCCCCCCcccCCCchhhhhc
Q 014805 250 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS 283 (418)
Q Consensus 250 r~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~ 283 (418)
|....-|.+|.++|.|..|+.|+++|+...+..+
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p~~hg~~~vv~~ 242 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCPTHHGCVPVVSK 242 (526)
T ss_pred cccHHhhhhhHhhceeeeccccccccccceeEee
Confidence 4455679999999999999999999998765544
No 47
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=22.72 E-value=32 Score=36.83 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccc
Q 014805 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (418)
Q Consensus 41 ~~~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~ 77 (418)
-..+..|+....|++|.++|.|.+|+.|++.|.....
T Consensus 203 tgp~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 203 TGPEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred cCcccccccHHhhhhhHhhceeeecccccccccccee
Confidence 3456677888899999999999999999999997754
Done!