Query 014805
Match_columns 418
No_of_seqs 362 out of 1888
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 1.3E-14 4.4E-19 115.7 5.7 68 47-145 7-74 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 1.1E-14 3.6E-19 115.5 3.3 69 249-325 8-76 (77)
3 1m9o_A Tristetraproline; Cys3H 99.5 2.7E-14 9.3E-19 113.1 4.4 69 45-117 7-75 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.4 2.8E-14 9.7E-19 118.9 2.5 88 42-148 5-95 (98)
5 2rhk_C Cleavage and polyadenyl 99.3 5E-13 1.7E-17 105.3 2.5 58 46-118 12-69 (72)
6 2d9n_A Cleavage and polyadenyl 99.2 4E-12 1.4E-16 101.2 2.3 55 91-163 9-63 (77)
7 2rhk_C Cleavage and polyadenyl 99.2 3.5E-12 1.2E-16 100.4 0.9 55 91-163 15-69 (72)
8 2cqe_A KIAA1064 protein; CCCH 99.2 1.6E-11 5.5E-16 102.2 4.9 55 247-324 7-61 (98)
9 3d2q_A Muscleblind-like protei 99.1 1.3E-11 4.5E-16 96.5 3.1 59 50-117 6-65 (70)
10 2e5s_A Otthump00000018578; ZF- 99.1 1.1E-11 3.7E-16 103.2 1.8 66 43-117 13-79 (98)
11 3d2n_A Muscleblind-like protei 99.0 2.4E-10 8.3E-15 92.3 3.5 57 50-117 9-66 (83)
12 3d2q_A Muscleblind-like protei 98.9 1.9E-10 6.4E-15 89.9 0.8 62 252-326 5-67 (70)
13 2rpp_A Muscleblind-like protei 98.9 7.6E-10 2.6E-14 90.4 3.0 57 50-117 17-74 (89)
14 3d2n_A Muscleblind-like protei 98.8 8.1E-10 2.8E-14 89.2 2.0 59 91-163 8-67 (83)
15 2e5s_A Otthump00000018578; ZF- 98.8 7E-10 2.4E-14 92.3 1.7 63 251-326 18-81 (98)
16 2rpp_A Muscleblind-like protei 98.8 1.7E-09 5.7E-14 88.4 2.2 57 92-162 17-74 (89)
17 3u9g_A Zinc finger CCCH-type a 98.5 6.8E-08 2.3E-12 90.7 3.9 78 52-162 91-198 (229)
18 3u9g_A Zinc finger CCCH-type a 98.2 1.8E-06 6.1E-11 81.1 5.8 65 94-160 91-177 (229)
19 2lhn_A Nuclear polyadenylated 97.4 3.8E-07 1.3E-11 72.9 0.0 65 50-162 9-73 (80)
20 2d9m_A Zinc finger CCCH-type d 97.8 1.1E-05 3.7E-10 62.5 2.7 31 252-283 19-49 (69)
21 2lhn_A Nuclear polyadenylated 96.6 1.5E-05 5.1E-10 63.7 0.0 41 93-160 10-50 (80)
22 2d9m_A Zinc finger CCCH-type d 97.3 0.00014 4.8E-09 56.3 2.9 33 43-77 14-46 (69)
23 2fc6_A Nuclear, target of EGR1 96.8 0.00023 7.8E-09 51.3 0.7 28 298-325 19-46 (50)
24 2fc6_A Nuclear, target of EGR1 95.9 0.0025 8.5E-08 46.0 1.3 29 48-76 18-46 (50)
25 3u1l_A PRE-mRNA-splicing facto 91.8 0.045 1.6E-06 51.9 1.1 25 50-75 70-94 (240)
26 3u1l_A PRE-mRNA-splicing facto 90.9 0.053 1.8E-06 51.5 0.7 26 299-325 70-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 75.5 0.57 1.9E-05 44.0 0.0 25 298-325 191-215 (223)
28 3v33_A Ribonuclease ZC3H12A; r 65.9 1.3 4.3E-05 41.6 0.0 25 252-279 191-215 (223)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=115.70 Aligned_cols=68 Identities=29% Similarity=0.656 Sum_probs=58.0
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 014805 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (418)
Q Consensus 47 Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~ 126 (418)
..++++|+||++ |.|++|++|+|+|+.... ++++|+||+++|.|. |++|+|+|....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------- 63 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPE-------- 63 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT--------
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCcc--------
Confidence 456889999997 999999999999997743 356899999889999 999999999753
Q ss_pred cccCCCCccCCCCccCcCC
Q 014805 127 NILGLPMRQDEKSCPYYMR 145 (418)
Q Consensus 127 ~~~g~P~r~~~~~C~~f~k 145 (418)
.+..+|.+|++
T Consensus 64 --------~~~~~C~~f~~ 74 (77)
T 2d9n_A 64 --------SKIKDCPWSGP 74 (77)
T ss_dssp --------SSCSSSSCCTT
T ss_pred --------ccCCCCccccc
Confidence 24679999995
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.48 E-value=1.1e-14 Score=115.50 Aligned_cols=69 Identities=29% Similarity=0.708 Sum_probs=31.2
Q ss_pred CCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014805 249 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 249 er~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
.++++.+|++|+++|.|++|++|+|+|+.++++... ...++++.+|.+|..+|.|++|.+|+|.|+..+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 357899999999889999999999999998887532 112567889999998899999999999998653
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.46 E-value=2.7e-14 Score=113.11 Aligned_cols=69 Identities=28% Similarity=0.583 Sum_probs=30.0
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 45 p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
..++++.+|++|+++|.|++|++|+|+|+..+..... ...+.++.+|++|..+|.|++|++|+|+|...
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4578999999998789999999999999987542211 11234678999888779999999999999865
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.43 E-value=2.8e-14 Score=118.85 Aligned_cols=88 Identities=25% Similarity=0.423 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCC
Q 014805 42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA 121 (418)
Q Consensus 42 ~~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~ 121 (418)
..+..++++.+|+||+ +|.|++|++|+|+|+. .+|++|+.+|.|++|++|+|+|.......
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~~------------------~~C~~f~~~G~C~~G~~C~f~H~~~~~~~ 65 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHGD------------------FPCKLYHTTGNCINGDDCMFSHDPLTEET 65 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSSS------------------SBCSHHHHTSCCSSCTTCSSBCCCCCHHH
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCCC------------------CcCcCcccCCcCCCCCCCcccCCCCcccc
Confidence 4456678899999998 5999999999999991 26999976699999999999999653211
Q ss_pred CC---ceecccCCCCccCCCCccCcCCCCC
Q 014805 122 GP---VSFNILGLPMRQDEKSCPYYMRTGS 148 (418)
Q Consensus 122 ~~---v~~~~~g~P~r~~~~~C~~f~k~G~ 148 (418)
.. ..++..+.+.+..++.|..+.|+|.
T Consensus 66 ~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 66 RELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred hhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 00 1234456677888999999999875
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.31 E-value=5e-13 Score=105.26 Aligned_cols=58 Identities=28% Similarity=0.617 Sum_probs=50.1
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCC
Q 014805 46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (418)
Q Consensus 46 ~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~ 118 (418)
...++++|+||++ |.|.+|++|+|+|+.+.. ++++|+||++.|.|.+ ++|+|.|....
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3567889999997 999999999999997642 4568999998899998 99999998753
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4e-12 Score=101.21 Aligned_cols=55 Identities=31% Similarity=0.753 Sum_probs=47.8
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~ 163 (418)
++.+|+||++ |.|++|++|+|+|+... .+.++|+||++.|.|. |++|+|.|..+.
T Consensus 9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~----------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 9 KTVVCKHWLR-GLCKKGDQCEFLHEYDM----------------TKMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TTSBCHHHHT-TCCSCTTSSSSBCSCCT----------------TTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred cceeCHhHcc-CcCCCCCCCCCcccccc----------------CcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 5679999999 99999999999999763 1356899999769999 899999999764
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.17 E-value=3.5e-12 Score=100.40 Aligned_cols=55 Identities=31% Similarity=0.736 Sum_probs=47.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 91 ~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~ 163 (418)
++.+|+||++ |.|++|++|+|+|+... ...++|+||++.|.|.+ ++|+|.|..+.
T Consensus 15 k~~vCk~fl~-G~C~~G~~C~fsH~~~~----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 15 KTVVCKHWLR-GLCKKGDQCEFLHEYDM----------------TKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCSBCHHHHT-TCCCCGGGSSSBCSCCT----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCeeCHHHhc-CCCCCCCCCCCcccccc----------------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 5678999999 99999999999999652 13569999996699999 99999999764
No 8
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.17 E-value=1.6e-11 Score=102.16 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=47.9
Q ss_pred CCCCCCCccchhhHhcCcCCCCCCcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014805 247 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 324 (418)
Q Consensus 247 ~Per~k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~ 324 (418)
+..+.++.+|+||++ |.|.+|+.|+|+|+ +.+|++|.++|.|++|.+|+|.|+..
T Consensus 7 ~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 7 GELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 344568999999975 99999999999995 34899998679999999999999954
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.15 E-value=1.3e-11 Score=96.49 Aligned_cols=59 Identities=39% Similarity=0.751 Sum_probs=47.1
Q ss_pred CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
.++|++|++ |.|.+|+ .|+|+|+.+.... -+...++++|++|++ |.|.+| +|+|+|...
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 468999996 9999999 5999999764211 012336789999999 999988 999999864
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=103.23 Aligned_cols=66 Identities=33% Similarity=0.620 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 43 PYPARPGEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 43 ~~p~Rp~~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
....-.+.++|++|++ |.|.+|+ .|+|+|+.+.... .+...++++|++|++ |.|.++ +|+|.|...
T Consensus 13 K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 13 KLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred cccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 3333445689999998 9999999 8999999864311 112336789999999 999988 999999875
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=92.27 Aligned_cols=57 Identities=35% Similarity=0.683 Sum_probs=46.4
Q ss_pred CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
.++|++|++ |.|.+|+ .|+|+|+...... +..+.++|.+|++ |.|.++ +|+|.|...
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~--------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE--------ETTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeehhHhhh-ccccCC-CcceeCChH
Confidence 468999998 9999997 9999999764210 1224678999999 999977 999999865
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.91 E-value=1.9e-10 Score=89.89 Aligned_cols=62 Identities=31% Similarity=0.718 Sum_probs=49.7
Q ss_pred CCccchhhHhcCcCCCCC-CcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805 252 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 326 (418)
Q Consensus 252 k~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~ 326 (418)
+..+|++|++ |.|..|+ .|+|+|+.+++... +...++.+|.+|.+ |.|..| .|+|.|+...|
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 4578999988 9999999 59999987654321 12335789999999 999999 99999997644
No 13
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.86 E-value=7.6e-10 Score=90.45 Aligned_cols=57 Identities=35% Similarity=0.701 Sum_probs=46.8
Q ss_pred CCCCccccccCCCCCCC-CCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 014805 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (418)
Q Consensus 50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~ 117 (418)
.++|++|+| |.|.+|+ .|+|+|+...... +..++++|.+|++ |.|.++ +|+|.|...
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 578999998 9999998 9999999764211 1225789999999 999965 999999865
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.83 E-value=8.1e-10 Score=89.20 Aligned_cols=59 Identities=27% Similarity=0.634 Sum_probs=46.9
Q ss_pred cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCCC
Q 014805 91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS 163 (418)
Q Consensus 91 ~~~~Ck~flktG~Ck~G~-~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~~ 163 (418)
+..+|++|++ |.|++|+ .|+|+|+....... .....+|.+|++ |.|.++ .|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 4578999999 9999997 99999997632110 123569999996 999998 9999999653
No 15
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=7e-10 Score=92.26 Aligned_cols=63 Identities=30% Similarity=0.662 Sum_probs=51.1
Q ss_pred CCCccchhhHhcCcCCCCC-CcccCCCchhhhhcccccCCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 014805 251 PDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 326 (418)
Q Consensus 251 ~k~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~~~~~~~~p~~lp~r~~~~~C~~y~~~G~C~~G~~C~f~Hp~~~~ 326 (418)
.+..+|++|++ |.|..|+ .|+|+|+.+.+.. .+...+..+|.+|.+ |.|..| .|+|.|+...+
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence 35679999999 9999999 7999998765431 112345789999999 999999 99999998643
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.78 E-value=1.7e-09 Score=88.44 Aligned_cols=57 Identities=26% Similarity=0.633 Sum_probs=46.1
Q ss_pred ccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805 92 QPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (418)
Q Consensus 92 ~~~Ck~flktG~Ck~G~-~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~ 162 (418)
..+|++|++ |.|++|+ .|+|+|+....... .....+|.+|++ |.|.++ .|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 568999999 9999998 99999997642211 113569999995 999987 999999965
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.47 E-value=6.8e-08 Score=90.74 Aligned_cols=78 Identities=27% Similarity=0.533 Sum_probs=59.8
Q ss_pred CCccccccCCCC----CCCCCCCCCccccccccc----------------------ccccCCCCcccccccccccc----
Q 014805 52 DCLFYRRTGLCG----YGSNCRFNHPAYAAQGAQ----------------------YREELPERNGQPDCGYYLKT---- 101 (418)
Q Consensus 52 ~C~~f~rtG~C~----~G~~C~F~H~~~~~~~~~----------------------~~~~~per~~~~~Ck~flkt---- 101 (418)
+|++|+ .|.|+ .+..|+|+|+.....+.. ...-+| .+|.+| +.
T Consensus 91 LCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~ 163 (229)
T 3u9g_A 91 LCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK 163 (229)
T ss_dssp CCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred echhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence 699999 49993 457899999986432110 011133 379999 72
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805 102 GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (418)
Q Consensus 102 G~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~ 162 (418)
|.|+++++|..+| +|.+|+ .|.|+| .+|+-.|...
T Consensus 164 g~C~~~~~C~kLH------------------------IC~~Fl-~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 164 QTCGQPQPCERLH------------------------ICEHFT-RGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CSCSSSSCCCSBC------------------------SCHHHH-TTCCCC-SSCSSCCCTT
T ss_pred CcCCCCCCCccee------------------------ccchhh-cCCcCC-CCccCccCcc
Confidence 5899999999999 799999 599999 7999999964
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.16 E-value=1.8e-06 Score=81.13 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=42.7
Q ss_pred ccccccccccCC----CCCCCCCCCCCCCCCCCCc-------eecc-----cCCCC--ccCCCCccCcCCC----CCCCC
Q 014805 94 DCGYYLKTGTCK----YGSTCKYHHPKDRNGAGPV-------SFNI-----LGLPM--RQDEKSCPYYMRT----GSCKF 151 (418)
Q Consensus 94 ~Ck~flktG~Ck----~G~~Crf~H~~~~~~~~~v-------~~~~-----~g~P~--r~~~~~C~~f~k~----G~C~~ 151 (418)
+||+|+. |.|. .+..|+|+|+.....+..+ .++. +-+.. ..-..+|.+| +. |.|.+
T Consensus 91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 5999998 9993 3577999999864321111 0110 00011 1234799999 63 69999
Q ss_pred CCCccCCCC
Q 014805 152 GVACKFHHP 160 (418)
Q Consensus 152 G~~Crf~H~ 160 (418)
+++|...|+
T Consensus 169 ~~~C~kLHI 177 (229)
T 3u9g_A 169 PQPCERLHI 177 (229)
T ss_dssp SSCCCSBCS
T ss_pred CCCCcceec
Confidence 999999998
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.38 E-value=3.8e-07 Score=72.88 Aligned_cols=65 Identities=26% Similarity=0.678 Sum_probs=52.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccccccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceeccc
Q 014805 50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNIL 129 (418)
Q Consensus 50 ~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~per~~~~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~ 129 (418)
.+.|+||.. |.+ ..|.|.|+... +.|+|+.. |+. .+|.|.|+..
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~~------------ 52 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPIN------------ 52 (80)
Confidence 457999997 999 89999998652 25999977 995 8899999732
Q ss_pred CCCCccCCCCccCcCCCCCCCCCCCccCCCCCC
Q 014805 130 GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP 162 (418)
Q Consensus 130 g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~~~ 162 (418)
..|+|+. .|.+ ..|.|.|+..
T Consensus 53 --------~~Crf~~---~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 53 --------EDCRFGV---NCKN-IYCLFRHPPG 73 (80)
Confidence 3798876 4997 7999999854
No 20
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=62.53 Aligned_cols=31 Identities=39% Similarity=0.726 Sum_probs=27.6
Q ss_pred CCccchhhHhcCcCCCCCCcccCCCchhhhhc
Q 014805 252 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQS 283 (418)
Q Consensus 252 k~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~ 283 (418)
+..+|+.|++ |.|+||+.|.|+|+.+||+..
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHHhhH
Confidence 5589999965 999999999999999999863
No 21
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.63 E-value=1.5e-05 Score=63.67 Aligned_cols=41 Identities=29% Similarity=0.770 Sum_probs=34.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCccCCCCccCcCCCCCCCCCCCccCCCC
Q 014805 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP 160 (418)
Q Consensus 93 ~~Ck~flktG~Ck~G~~Crf~H~~~~~~~~~v~~~~~g~P~r~~~~~C~~f~k~G~C~~G~~Crf~H~ 160 (418)
..|+||.. |+. +.|.|.|... ...|+++. .|.+ .+|.|.|+
T Consensus 10 e~CKf~~~---Ctn-~~C~f~Hp~~-------------------~~~Cr~g~---~C~~-~~C~f~HP 50 (80)
T 2lhn_A 10 EQCKFGTH---CTN-KRCKYRHARS-------------------HIMCREGA---NCTR-IDCLFGHP 50 (80)
Confidence 47999998 996 9999999753 23799876 4997 78999998
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=56.31 Aligned_cols=33 Identities=27% Similarity=0.541 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCccccccCCCCCCCCCCCCCccccc
Q 014805 43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (418)
Q Consensus 43 ~~p~Rp~~~~C~~f~rtG~C~~G~~C~F~H~~~~~ 77 (418)
.+|.. +..+|+.|. +|.|.+|++|.|+|...+.
T Consensus 14 R~P~~-k~~LC~~~~-~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 14 RFPTG-YFSICDRYM-NGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCCCS-CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred cCCCC-CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence 33433 459999996 6999999999999998764
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.85 E-value=0.00023 Score=51.33 Aligned_cols=28 Identities=43% Similarity=1.028 Sum_probs=25.9
Q ss_pred CccccccccccccCCCCCCCCCCCCCCC
Q 014805 298 GQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
++.+|..|..+|+|++|.+|.|.|.++-
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCC
Confidence 5789999999999999999999999863
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.87 E-value=0.0025 Score=45.96 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=26.9
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCcccc
Q 014805 48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76 (418)
Q Consensus 48 p~~~~C~~f~rtG~C~~G~~C~F~H~~~~ 76 (418)
.++.+|..|...|.|++|.+|.+.|+.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 57899999999999999999999999875
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.75 E-value=0.045 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.804 Sum_probs=22.4
Q ss_pred CCCCccccccCCCCCCCCCCCCCccc
Q 014805 50 EPDCLFYRRTGLCGYGSNCRFNHPAY 75 (418)
Q Consensus 50 ~~~C~~f~rtG~C~~G~~C~F~H~~~ 75 (418)
.-+|.||.| |.|.+|++|.|.|...
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCC
Confidence 458999998 9999999999999854
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.93 E-value=0.053 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=23.6
Q ss_pred ccccccccccccCCCCCCCCCCCCCCC
Q 014805 299 QAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 299 ~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
..+|.||.+ |.|+.|..|.|.|-++.
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 459999999 99999999999998765
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=75.55 E-value=0.57 Score=43.96 Aligned_cols=25 Identities=32% Similarity=0.677 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCCCCCCCCC
Q 014805 298 GQAICSNYSMYGICKFGPTCRFDHPYAG 325 (418)
Q Consensus 298 ~~~~C~~y~~~G~C~~G~~C~f~Hp~~~ 325 (418)
+..+|.|-.+ |-||.+|+|.||...
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccC
Confidence 4678999776 999999999999754
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=65.90 E-value=1.3 Score=41.63 Aligned_cols=25 Identities=36% Similarity=0.998 Sum_probs=0.0
Q ss_pred CCccchhhHhcCcCCCCCCcccCCCchh
Q 014805 252 DQPDCRYYMNTGTCKYGADCKFHHPKER 279 (418)
Q Consensus 252 k~~~C~~f~~~G~C~~G~~C~f~H~~~~ 279 (418)
+.+.|.|-.+ |.||.+|+|.|++..
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccC
Confidence 4567999877 999999999998754
Done!