BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014807
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 143/314 (45%), Gaps = 15/314 (4%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D + E ++ ER+ V + + F ++ SA L L L +K +
Sbjct: 147 DQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMM 205
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYS 182
+ G E++ +P ++ ++ RG + L + +F+ +++ + + G ++
Sbjct: 206 AFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIE 265
Query: 183 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 242
A A V A+ + L+ L+ ++ F ++ L + V+++ LWFD+K+T ++ +
Sbjct: 266 ADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLF 322
Query: 243 GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-K 301
L+ + D++ E++D ++++ F A + + D+ ++A ++ + K +
Sbjct: 323 SRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQ 381
Query: 302 DFS---TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 358
FS A + +KI + P S+ PG +Y + N F+ GD+ R+ + S E
Sbjct: 382 HFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLA-SME 440
Query: 359 RSYVTGLEAANRVV 372
+ ++G A ++
Sbjct: 441 GAVLSGKLTAQAII 454
>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=pds PE=3 SV=2
Length = 472
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/316 (18%), Positives = 136/316 (43%), Gaps = 15/316 (4%)
Query: 66 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 125
+ D T E + R+ + V + + F ++ SA L L L +
Sbjct: 145 EMDKYTWSEWMAKQNIPPRIEKEVFIAMSKALNFIDPDEISATILLTALNRF-LQEKNGS 203
Query: 126 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KET 180
+ + G E++ +P +D + RG E + + + + +E+ ++ G E
Sbjct: 204 KMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGLDGAPDEV 263
Query: 181 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 240
+A V A+ + L+ ++ + EF ++ L + V+++ LWFD+K+T ++ +
Sbjct: 264 ITADLYVSAMPVDPLKTMVP-APWREYPEFKQIQGLEGVPVINLHLWFDRKLT--DIDHL 320
Query: 241 CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI 300
L+ + D++ E+ D ++++ A + + D+++VA ++ + +
Sbjct: 321 LFSRSPLLS-VYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLF 379
Query: 301 KDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWS 356
+ A ++ + + P+S+ PG TS PN ++AGD+ ++ S
Sbjct: 380 PQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLG-S 438
Query: 357 QERSYVTGLEAANRVV 372
E + ++G + A +
Sbjct: 439 MEGAVLSGKQCAQAIA 454
>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus
(strain PCC 7942) GN=zds PE=3 SV=1
Length = 481
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 151/386 (39%), Gaps = 29/386 (7%)
Query: 11 LEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 70
L+ FPI N L T T +L L + PL+ ++D++ R D I
Sbjct: 96 LDFRFPIGAPFNGLKAFFTTSQLTWLDKLQNALALGTSPLVRGILDYEGAMKIIRALDRI 155
Query: 71 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC 130
+ + F+ G SE + + P+ F E SA L + + + A + L
Sbjct: 156 SFADWFRSHGGSEGSLKRMWNPIAYALGFIDTENISARCMLTV-FQMFAAKTEASKLNLL 214
Query: 131 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAV---- 186
G+ E + +P +D ++ RG RRV + Y E VV G + AV
Sbjct: 215 AGSPAEYLHKPILDYIQARGATLHLRRRVREIEYTETNG--QTVVTGLQIADGDAVERVE 272
Query: 187 ----VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT------VPN 236
+ A + +Q L+ + EF + L ++ V +V+L FD VT +
Sbjct: 273 ADVYLAACDVPGIQRLLPEA-WRKWSEFDNIYKLDAVPVATVQLRFDGWVTELGDREKRH 331
Query: 237 VSNACSGFGDSLAWT-------FFD--LNKIYDEHKDDSATVIQADFYHANELMPLKDDQ 287
+ +G D+L +T F D L+ D ++ +++Q + + +K++
Sbjct: 332 QLDHATGL-DNLLYTADADFSCFTDLALSSPKDYYRKGQGSLLQCVLTPGDPFIAMKNED 390
Query: 288 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDW 347
+ + + + + + + +SL PG + T N F+AG +
Sbjct: 391 IAQHVLKQVHELFPSSRDLNMTWSNVVKLAQSLYREAPGMDPFRPDQKTPIANFFLAGSY 450
Query: 348 ITTRHGSWSQERSYVTGLEAANRVVD 373
+ S E + ++G AA +++
Sbjct: 451 TQQDYID-SMEGATISGRRAAKAMLE 475
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 131/313 (41%), Gaps = 11/313 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D I+ ++ ++ G +R+ V + + F ++ S L I L + +
Sbjct: 258 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 316
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P ++ + ++G + R+ +E+ ++ T A V
Sbjct: 317 AFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFV 376
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + + L+ F K+ L + V++V +WFD+K+ N S+
Sbjct: 377 FATPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTSDNLLFSRSP 433
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-----KD 302
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 434 LLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISAD 493
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ PG + + ++AGD+ ++ + S E + +
Sbjct: 494 QSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLA-SMEGAVL 552
Query: 363 TGLEAANRVV-DY 374
+G A +V DY
Sbjct: 553 SGKLCAQAIVQDY 565
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 11/313 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D +T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 244 DGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 302
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +R+RG E R+ + + + + A V
Sbjct: 303 AFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYV 362
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + + L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 363 CATPVDIFKLLVPQE-WSEITYFKKLEKLVGVPVINVHIWFDRKLN--NTYDHLLFSRSS 419
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ D + ++++ F A+E + D +++ + L+K D
Sbjct: 420 LLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAAD 479
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + I + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 480 QSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 538
Query: 363 TGLEAANRVV-DY 374
+G A +V DY
Sbjct: 539 SGKLCAQSIVQDY 551
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 130/313 (41%), Gaps = 11/313 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D ++ +E ++ G ER+ V + + F ++ S L I L + +
Sbjct: 240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 298
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +R+ G E R+ +++ S ++ T A V
Sbjct: 299 AFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYV 358
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + L+ L+ + F K+ L + V++V +WFD+K+ N + +
Sbjct: 359 FAAPVDILKLLLPDP-WKEIPYFKKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSN 415
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ D + ++++ F A E + D ++ + L K D
Sbjct: 416 LLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISAD 475
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 476 QSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 534
Query: 363 TGLEAANRVV-DY 374
+G + +V DY
Sbjct: 535 SGKFCSQSIVQDY 547
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/310 (18%), Positives = 130/310 (41%), Gaps = 10/310 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D ++ +E K+ G ER+ V + + F ++ S L I L + +
Sbjct: 246 DGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 304
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +++ G E R+ +++ S ++ + A V
Sbjct: 305 AFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYV 364
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + L+ L+ ++ F ++ L + V++V +WFD+K+ N +
Sbjct: 365 FATPVDILKLLLPDN-WKGIPYFQRLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSP 421
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ + ++++ F A E + DD ++ ++ L+K D
Sbjct: 422 LLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISAD 481
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 482 QSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 540
Query: 363 TGLEAANRVV 372
+G A +V
Sbjct: 541 SGKLCAQAIV 550
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +R+ G E R+ + + + + A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + L+ L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546
Query: 363 TGLEAANRVVD 373
+G A VV+
Sbjct: 547 SGKLCAQSVVE 557
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +R+ G E R+ + + + + A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + L+ L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546
Query: 363 TGLEAANRVVD 373
+G A VV+
Sbjct: 547 SGKLCAQSVVE 557
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 130/315 (41%), Gaps = 15/315 (4%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D +T E ++ G +R+ V + + F ++ S L I L + +
Sbjct: 245 DGLTVTEWMRRQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 303
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P +D +++ G R+ + + V+ + A V
Sbjct: 304 AFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLGNGNIITGDAYV 363
Query: 188 LAVGISTLQELIKNSILCNRE--EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 245
+A + L+ L+ RE F K+ L + V++V +WFD+K+ N +
Sbjct: 364 VAAPVDILKLLLPQEW---REIPYFQKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFTR 418
Query: 246 DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK---- 301
L + D++ E+ D + ++++ F A E + D +++ + + L+K
Sbjct: 419 SPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIA 478
Query: 302 -DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERS 360
D S A ++ + + + P+S+ P + ++AGD+ ++ + S E +
Sbjct: 479 ADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLA-SMEGA 537
Query: 361 YVTGLEAANRVV-DY 374
++G A +V DY
Sbjct: 538 VLSGKLCAQSIVQDY 552
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/313 (18%), Positives = 129/313 (41%), Gaps = 11/313 (3%)
Query: 68 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 127
D I+ ++ ++ G +R+ V + + F ++ S L I L + +
Sbjct: 259 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 317
Query: 128 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 187
+ G E++ P ++ + ++G + R+ +E+ S ++ A V
Sbjct: 318 AFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFILSDGSAIEGDAFV 377
Query: 188 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 247
A + + L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 378 FAAPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 434
Query: 248 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 302
L + D++ E+ + + ++++ F A E + D +++ + L+ D
Sbjct: 435 LLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELATLFPDEISAD 494
Query: 303 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 362
S A ++ + + + P+S+ PG + ++AGD+ ++ + S E + +
Sbjct: 495 QSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 553
Query: 363 TGLEAANRVV-DY 374
+G A +V DY
Sbjct: 554 SGKLCAQAIVQDY 566
>sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr-79 OS=Caenorhabditis
elegans GN=nhr-79 PE=2 SV=2
Length = 463
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 334 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 376
G FP++F D I +R S S+ +YVTG+E R+ G
Sbjct: 159 GVDDFPDIFTDSDEIRSRMTSISEASAYVTGMEEEERLFGLAG 201
>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays
GN=ZDS1 PE=2 SV=1
Length = 570
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 146/384 (38%), Gaps = 33/384 (8%)
Query: 11 LEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 70
L+ FP+ L+ + L T + + L P++ A++D D R D I
Sbjct: 160 LDFRFPVGAPLHGIQAFLRTNQLKVYDKARNAVALALSPVVRALVDPDGALQQVRDLDDI 219
Query: 71 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV-W 129
+ + F G + + P+ F + SA L I F + A + L+
Sbjct: 220 SFSDWFMSKGGTRESITRMWDPVRYALGFIDCDNISARCMLTI--FTLFATKTEASLLRM 277
Query: 130 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-------RCCISDVVCGKETYS 182
+G+ + P + RG F + +Y++ + + +E
Sbjct: 278 LKGSPDVYLSGPIKKYITDRGGRFHLRWGCREVLYEKSPDGETYVKGLLLTKATSREIIK 337
Query: 183 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT----VPNVS 238
A A V A + ++ L+ S E F + L + VV+V+L ++ VT +
Sbjct: 338 ADAYVAACDVPGIKRLLP-SEWREWEMFDNIYKLDGVPVVTVQLRYNGWVTELQDLEKSR 396
Query: 239 NACSGFG-DSLAWT-------FFDL--NKIYDEHKDDSATVIQADFYHANELMPLKDDQV 288
G D+L +T F DL + D + + ++IQA + MPL ++++
Sbjct: 397 QLQRAVGLDNLLYTADADFSCFSDLALSSPADYYIEGQGSLIQAVLTPGDPYMPLPNEEI 456
Query: 289 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAG--- 345
++K + + V + + +SL PG+ + T N F++G
Sbjct: 457 ISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSYT 516
Query: 346 --DWITTRHG---SWSQERSYVTG 364
D+I + G S + +Y+ G
Sbjct: 517 KQDYIDSMEGATLSGRRTSAYICG 540
>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3
Length = 558
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 80/395 (20%), Positives = 152/395 (38%), Gaps = 46/395 (11%)
Query: 11 LEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 70
L+ FP+ ++ + L T + +L L P++ A++D D R DSI
Sbjct: 152 LDFRFPVGAPIHGIRAFLVTNQLKPYDKLRNSLALALSPVVKALVDPDGAMRDIRNLDSI 211
Query: 71 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV-W 129
+ + F G + + + P+ F + SA L I F + A + L+
Sbjct: 212 SFSDWFLSKGGTRASIQRMWDPVAYALGFIDCDNMSARCMLTI--FSLFATKTEASLLRM 269
Query: 130 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 189
+G+ + P + RG + +YD+ ETY G LA
Sbjct: 270 LKGSPDVYLSGPIKQYITDRGGRIHLRWGCREILYDKS--------ADGETYVTG---LA 318
Query: 190 VGISTLQELIKNSI---LCN------------REE--FLKVLNLASIDVVSVKLWFDKKV 232
+ +T ++++K + C+ RE F + L + VV+V+L ++ V
Sbjct: 319 ISKATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFFNDIYELEGVPVVTVQLRYNGWV 378
Query: 233 T----VPNVSNACSGFG-DSLAWT-------FFDLN--KIYDEHKDDSATVIQADFYHAN 278
T + G D+L +T F DL D + + T++Q +
Sbjct: 379 TELQDIELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGD 438
Query: 279 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSF 338
M + +D+++ K +++ V + + +SL PG + T
Sbjct: 439 PYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPI 498
Query: 339 PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 373
N F+AG + T + S E + ++G +A++ + D
Sbjct: 499 KNFFLAGSY-TKQDYIDSMEGATLSGRQASSYICD 532
>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=ZDS1 PE=2 SV=1
Length = 574
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 134/342 (39%), Gaps = 26/342 (7%)
Query: 49 PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAA 108
P++ A+ID + R D+I+ + F G + + + P+ F + SA
Sbjct: 198 PVVRALIDPNGAMQDIRNLDNISFSDWFLSKGGTRMSIQRMWDPVAYALGFIDCDNISAR 257
Query: 109 ATLGILYFIILAHQKNFDLV-WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE- 166
L I F + A + L+ +G+ + P + +G F + +YDE
Sbjct: 258 CMLTI--FSLFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDEL 315
Query: 167 --ERCCISDVVCGKET----YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID 220
I+ + K T A V A + ++ LI S + F + L +
Sbjct: 316 SNGDTYITGIAMSKATNKKLVKADVYVAACDVPGIKRLIP-SEWREWDLFDNIYKLVGVP 374
Query: 221 VVSVKLWFDKKVT----VPNVSNACSGFG-DSLAWT-------FFDL--NKIYDEHKDDS 266
VV+V+L ++ VT + + G D+L +T F DL + D + +
Sbjct: 375 VVTVQLRYNGWVTEMQDLEKSRQLRAAVGLDNLLYTPDADFSCFSDLALSSPEDYYIEGQ 434
Query: 267 ATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPG 326
++IQA + MPL +D ++ + + V+ + + +SL PG
Sbjct: 435 GSLIQAVLTPGDPYMPLPNDAIIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPG 494
Query: 327 SYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 368
+ T N F+AG + T + S E + ++G +AA
Sbjct: 495 KDPFRPDQKTPVKNFFLAGSY-TKQDYIDSMEGATLSGRQAA 535
>sp|Q31IB6|GLGB_THICR 1,4-alpha-glucan branching enzyme GlgB OS=Thiomicrospira crunogena
(strain XCL-2) GN=glgB PE=3 SV=1
Length = 726
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 209 EFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDSLAWT---------FFDLN 256
EFLK LN + ++ + P VS G G S+ W FF +
Sbjct: 439 EFLKTLNAEVHAQCPGALMMAEESTSWPMVSRPTWMGGLGFSMKWNMGWMNDTLDFFQQD 498
Query: 257 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 302
IY + + T Q Y N ++PL D+VV + +SK D
Sbjct: 499 PIYRPYHHNQLTFSQMYAYSENFILPLSHDEVVHMKHALVSKMPGD 544
>sp|Q9ZCN2|Y691_RICPR Uncharacterized protein RP691 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP691 PE=4 SV=1
Length = 656
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 211 LKVLNLAS-IDVVSVKLWFDKKVTVPNVSNACSGFGDSLA----WTFFDLNKIYDEHKDD 265
LK+L+LA+ IDV++ ++ NV NA S G ++A T LNKI DD
Sbjct: 578 LKLLSLATLIDVLTTA------ISDLNVGNAISSAGKNIAEKTATTLTWLNKIASGTNDD 631
Query: 266 SATVIQADFYHANELMPL 283
+ I D H EL PL
Sbjct: 632 TNDDIVIDIAHTEELQPL 649
>sp|O67115|SYW_AQUAE Tryptophan--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=trpS
PE=3 SV=1
Length = 395
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 365 LEAANRVVDYLGDGSFSKIIPVEEDE-PHIEALRTVNRRFNEIRAQL 410
L+AA+ ++ Y G+G +PV ED+ PHIE R + RRFN + ++
Sbjct: 200 LQAAD-ILIYKGEG-----VPVGEDQLPHIELSREIARRFNRLYGKI 240
>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=ZDS PE=2 SV=1
Length = 588
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 77/386 (19%), Positives = 142/386 (36%), Gaps = 41/386 (10%)
Query: 11 LEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 70
L+ FP+ L+ + L T + + L P++ A++D D R D++
Sbjct: 175 LDFRFPVGAPLHGINAFLSTNQLKIYDKARNAVALALSPVVRALVDPDGALQQIRDLDNV 234
Query: 71 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-------ILAHQK 123
+ E F G + + + P+ F + SA L I +L K
Sbjct: 235 SFSEWFLSKGGTRASIQRMWDPVAYALGFIDCDNMSARCMLTIFALFATKTEASLLRMLK 294
Query: 124 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET--- 180
V+ G +++ I + GC R V + +S + K T
Sbjct: 295 GSPDVYLSGPIKKYIMDKGGRFHLRWGC-----REVLYETSSDGSMYVSGLAMSKATQKK 349
Query: 181 -YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVS 238
A A V A + ++ L+ E F + L + VV+V+L ++ VT + ++
Sbjct: 350 IVKADAYVAACDVPGIKRLVPQK-WRELEFFDNIYKLVGVPVVTVQLRYNGWVTELQDLE 408
Query: 239 NA-----CSGFGDSLAWT-------FFDLNKIY--DEHKDDSATVIQADFYHANELMPLK 284
+ +G D+L +T F DL D + + +++Q + MPL
Sbjct: 409 RSRQLKRAAGL-DNLLYTPDADFSCFADLALASPDDYYIEGQGSLLQCVLTPGDPYMPLS 467
Query: 285 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 344
+D+++ + + V + + +SL PG + T N F+A
Sbjct: 468 NDEIIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLA 527
Query: 345 G-----DWITTRHG---SWSQERSYV 362
G D+I + G S Q +Y+
Sbjct: 528 GSYTKQDYIDSMEGATLSGRQASAYI 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,829,112
Number of Sequences: 539616
Number of extensions: 6403507
Number of successful extensions: 13095
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13087
Number of HSP's gapped (non-prelim): 20
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)