BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014809
(418 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 197/297 (66%), Positives = 227/297 (76%), Gaps = 4/297 (1%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
S VSNCYVFKSRLQEYAQK G+PTPVYETIKEGPSHEP FRSTVIV+D+RYDSLPGFFNR
Sbjct: 9 SSVSNCYVFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNR 68
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
KAAEQSAAEVAL+ELAK +VN+ ISQP+HETGLCKNLLQEYAQKMNYAIPLY C+K+E+
Sbjct: 69 KAAEQSAAEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNES 128
Query: 128 SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
G+ F CTVEIG I YIG +AKTKKEAEIKAARTALLAIQ SASE S NS GN QLTV
Sbjct: 129 PGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSASESSHNSIGNCQLTV 188
Query: 187 LPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQ 246
+P RKRG E A EE +NVPKAKK RF+KK LK K G ++D Q + GN ++ Q
Sbjct: 189 IPFRKRGAETAAVLEEAMNVPKAKKARFRKKTLKKKHSGNKVDHNQGETIGNKKD---GQ 245
Query: 247 EGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHHIGGD 303
GS+ + + S +QG ++L + T + ++GR E ERE V AL HI GD
Sbjct: 246 AGSESDKNDASVVQGTGHQLLPMLSTSNSEDGRLVPESSERETTDVTGALVCHISGD 302
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 246/349 (70%), Gaps = 13/349 (3%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +N+GF+GVSNCYVFKSRLQEYAQK G+PTP+Y+TIKEGP H P F+STVIV+DVRYDS
Sbjct: 1 MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGF NRKAAEQSAAEVALVELAK G + ECISQP+HETGLCKNLLQEYAQKMNYAIP+Y
Sbjct: 61 LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120
Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
C+KDE+ G+ FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++ + S
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSI 180
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
GNTQLTV+P +K+GPE + NP+E K KK RFK K L+ K PG ++ Q+++T M
Sbjct: 181 GNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGM 239
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMPAVNDALPH 298
E +Q GS++ Q + S +Q + +L++E + +E +S + + + A D +P
Sbjct: 240 EVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPD 299
Query: 299 HIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 338
I G+ + + A+ E+G SS+ A EVN V+
Sbjct: 300 II-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 246/349 (70%), Gaps = 13/349 (3%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +N+GF+GVSNCYVFKSRLQEYAQK G+PTP+Y+TIKEGP H P F+STVIV+DVRYDS
Sbjct: 1 MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGF NRKAAEQSAAEVALVELAK G + ECISQP+HETGLCKNLLQEYAQKMNYAIP+Y
Sbjct: 61 LPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMY 120
Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
C+KDE+ G+ FSCTVEIG IRYIG AA+TKKEAEIKAARTALLAI+++ + S
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSI 180
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
GNTQLTV+P +K+GPE + NP+E K KK RFK K L+ K PG ++ Q+++T M
Sbjct: 181 GNTQLTVIPGKKKGPE-SGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGM 239
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEI-EPIEREMPAVNDALPH 298
E +Q GS++ Q + S +Q + +L++E + +E +S + + + A D +P
Sbjct: 240 EVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPD 299
Query: 299 HIGGDSETIHSAATHCSDRSSNEASEMGTSSL---------AKEVNEVT 338
I G+ + + A+ E+G SS+ A EVN V+
Sbjct: 300 II-GNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVS 347
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/281 (66%), Positives = 207/281 (73%), Gaps = 2/281 (0%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
MPTNE F VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVALVEL K VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120
Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS S N
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASHASENQV 180
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
G+ QLTVLP RKR +E N PK KK RFK+K K K +M + +N G
Sbjct: 181 GHPQLTVLPCRKRATSSVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
E IN E + S SG+ TE E T + + G S
Sbjct: 241 EIINHEVE-THASVNGESGLLEKKTETFTSEATNNFENGVS 280
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 217/399 (54%), Positives = 262/399 (65%), Gaps = 47/399 (11%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M TNEGFSGVSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV DVRYDS
Sbjct: 1 MLTNEGFSGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVALVELAK G++NE SQP++ETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
+C+KDE G+ + F CTVEIG IRYIG + KTKKEAEIKAARTALLAIQSS S+ +
Sbjct: 121 ECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSGSD---KQS 177
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
G++QLTV+P RKRG E A+ EE NVPK KK RFKKK+LK K R++ Q + T +
Sbjct: 178 GSSQLTVIPCRKRGVE-ASFQEEAENVPKPKKARFKKKMLKKKLSRDRINNAQSELTEKL 236
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHH 299
NI Q GS+ Q + S I+G + ++ +E M Q+G+S+ E + L +
Sbjct: 237 -NIVNGQSGSEADQTDKSAIRGANCKLXTMETQMTFQDGKSDTNLNGGETXDIEGVLTSY 295
Query: 300 IGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGVGTSSVSCHTTALAKEVNE 359
G+ E++ A+ + + + +E+ S A GT V
Sbjct: 296 DAGNPESVQLASPNFNQSNHGTGAEISAKSNA----------GTGKV------------- 332
Query: 360 GTPNEGTSTALTEEVNEPSGIMEAASMTNNSTLGQIESS 398
+GI+E ASM NNS L QI +S
Sbjct: 333 ------------------TGIIEVASMANNSVLAQIGAS 353
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 185/281 (65%), Positives = 208/281 (74%), Gaps = 2/281 (0%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
MPTNE F VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVALVEL K VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120
Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS+ S +
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQV 180
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
G+ QLTVLP RKR E +E N PK KK RFK+K K K +M + +N G
Sbjct: 181 GHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
NIN E + S SG+ +E E + + G S
Sbjct: 241 ANINHEVE-THASVNGESGVLEKKSETFTSEAANNFENGVS 280
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 185/281 (65%), Positives = 208/281 (74%), Gaps = 2/281 (0%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
MPTNE F VSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV+DVRYDS
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVALVEL K VN+ I+QP+HETGLCKNLLQEYAQKMNYA+P+Y
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMY 120
Query: 121 QCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+KDE G+ FSCTV+IG I YIGGAAKTKKEAEIKAARTALLAIQSSAS+ S +
Sbjct: 121 QCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQV 180
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNM 239
G+ QLTVLP RKR E +E N PK KK RFK+K K K +M + +N G
Sbjct: 181 GHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIG 240
Query: 240 ENINASQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRS 280
NIN E + S SG+ +E E + + G S
Sbjct: 241 ANINHEVE-THASVNGESGVLEKKSETFTSEAANNFENGVS 280
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 169/265 (63%), Positives = 200/265 (75%), Gaps = 7/265 (2%)
Query: 3 TNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP 62
TNE F GVSNCYVFKS+LQEYAQKAG+ TPVYET KEGPSHEP FRSTVI++DVRYDSL
Sbjct: 4 TNEDFQGVSNCYVFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLA 63
Query: 63 GFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQC 122
GFFNRKAAEQSAAEVAL+ELAK G+VN+ I+QP+HETGLCKNLLQEYAQKMNYA+PLYQ
Sbjct: 64 GFFNRKAAEQSAAEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQS 123
Query: 123 RKDEA-SGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAG 180
+KD+ G+ +SCTV+IG + YIGG AKTK+EAEIKAARTALLAIQ++AS+ S N G
Sbjct: 124 KKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTNASQASENQFG 183
Query: 181 NTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNME 240
+ LTV+PSRKR E +E PK+KK RFK K K K + R N G+
Sbjct: 184 H--LTVIPSRKRATESI--ADEASKAPKSKKSRFKGKYSKKKPHRNKKRRINADNAGDEA 239
Query: 241 NINASQEGSKVSQANTSGIQGVSTE 265
I+ E S S + SG+Q + +E
Sbjct: 240 KIDNGAE-SLASANDESGLQEIKSE 263
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 158/219 (72%), Positives = 178/219 (81%), Gaps = 4/219 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
MP + F GVSNCYVFKSRLQEYAQK G+PTPVYETIKEGPSHEP F STVIV+DVRYDS
Sbjct: 1 MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGF NRKAAEQSAAEVAL+EL+K +N +SQP+HETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61 LPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120
Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+KD+ G+ FSCTVEIG IRYIG AKTKKEAEIKAARTALLAIQS + LS S
Sbjct: 121 QCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSV 180
Query: 180 GNTQLTVLPS--RKRGPEVANNPEETVNVPKAKKGRFKK 216
QLTV+PS RK + + P+ T + P+AKKGRFK+
Sbjct: 181 NQVQLTVIPSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 218
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/200 (79%), Positives = 174/200 (87%), Gaps = 5/200 (2%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SGVSNCYVFKSRLQEYAQKAG+PTPVYETIKEGPSHEP FRSTVIV +VRYDSLPGFFNR
Sbjct: 1 SGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNR 60
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
KAAEQSAAEVALVELAK G++NE SQP+HETGLCKNLLQEYAQKMNYAIPLY+C+KDE
Sbjct: 61 KAAEQSAAEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDET 120
Query: 128 SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
G+ + F CTVEIG IRYIG +AKTKKEAEIKAARTALLAIQSS S+ +GN+QLTV
Sbjct: 121 PGRGLVFKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQSSGSD---KPSGNSQLTV 177
Query: 187 LPSRKRGPEVANNPEETVNV 206
+P RKRG E + EE N+
Sbjct: 178 IPCRKRGVETSVQ-EEMANI 196
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/211 (73%), Positives = 174/211 (82%), Gaps = 4/211 (1%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
GVSNCYVFKSRLQEYAQK G+PTPVYETIKEGPSHEP F STVIV+DVRYDSLPGF NRK
Sbjct: 2 GVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRK 61
Query: 69 AAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
AAEQSAAEVAL+EL+K +N +SQP+HETGLCKNLLQEYAQKMN+AIPLYQC+KD+
Sbjct: 62 AAEQSAAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGP 121
Query: 129 GK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVL 187
G+ FSCTVEIG IRYIG AKTKKEAEIKAARTALLAIQS + LS S QLTV+
Sbjct: 122 GRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPNSLSEKSVNQVQLTVI 181
Query: 188 PS--RKRGPEVANNPEETVNVPKAKKGRFKK 216
PS RK + + P+ T + P+AKKGRFK+
Sbjct: 182 PSCKRKEAADCSVKPKSTAS-PRAKKGRFKR 211
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/217 (67%), Positives = 174/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M N+ SGVSNCYVFKSRLQEYAQ+ +PTP+YETIKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTANDVSSGVSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + +C+S P+HE GLCKNLLQEY QKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/216 (67%), Positives = 174/216 (80%), Gaps = 4/216 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M N+ SGVSNCYVFKSRLQEYAQK +PTP+YET+KEGPSH+ F+STVIVD VRYDS
Sbjct: 1 MTANDVPSGVSNCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL EL+K ++ +C+S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC+K E G+ QF+CTVEIG I+Y G A KTK+EAEI A RTAL+AIQ+ S +L+ N
Sbjct: 121 QCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESKIDLANNH 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF 214
+ TQLTVLP K+ EVA+ +ET+ PKA++ +F
Sbjct: 181 S--TQLTVLPCEKKTVEVASPVKETIKTPKARRAQF 214
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/216 (67%), Positives = 174/216 (80%), Gaps = 3/216 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M NE SGVSNCYVFKSRLQEYAQ+ +PTP+YETIKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTANEVSSGVSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S+++ +
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSE-SKMALANN 179
Query: 180 GNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 180 YSTQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/217 (67%), Positives = 175/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +N+ SGVSNCYVFKSRLQEYAQK +PTP+YET+KEGPSH+ F+STVIVD VRYDS
Sbjct: 1 MTSNDVSSGVSNCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL EL+K ++ +C+S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC+K E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/217 (67%), Positives = 174/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M NE SGVSNCYVFKSRLQEYAQ+ +PTP+YETIKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTANEVSSGVSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKMDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--TQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 174/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +NE SGVSNCYVFKSRLQEYAQ+ +PTP+YE IKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTSNEVSSGVSNCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 174/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +NE SGVSNCYVFKSRLQEYAQ+ +PTP+YETIKEGPSH+P +STVIV+DVRYDS
Sbjct: 1 MTSNEVSSGVSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKMDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ TQLTV+P K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--TQLTVIPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/209 (68%), Positives = 170/209 (81%), Gaps = 4/209 (1%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SGVSNCYVFKSRLQEYAQK +PTP+YET+KEGPSH+ F+STVIVD VRYDSLPGFFNR
Sbjct: 8 SGVSNCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNR 67
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
KAAEQSAAEVAL EL+K ++ +C+S P+HE GLCKNLLQEYAQKMNYAIPLYQC+K E
Sbjct: 68 KAAEQSAAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSET 127
Query: 128 SGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNSAGNTQLT 185
G+ QF+CTVEIG I+Y G A KTK+EAEI A RTAL+AIQ+ S +L+ N + TQLT
Sbjct: 128 LGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESKIDLANNHS--TQLT 185
Query: 186 VLPSRKRGPEVANNPEETVNVPKAKKGRF 214
VLP K+ EVA+ +ET PKA++ +F
Sbjct: 186 VLPCEKKTVEVASPVKETFKTPKARRAQF 214
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/217 (66%), Positives = 174/217 (80%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M +N+ SGVSNCYVFKSRLQEYAQ+ +PTP+YE IKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTSNDVSSGVSNCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 173/217 (79%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M NE SGVSNCYVFKSRLQEYAQ+ +PTP+YETIKEGPSH+P F+STVIV+ VRYDS
Sbjct: 1 MTANEVSSGVSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL LAK + +C+S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI + RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ TQLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--TQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/217 (66%), Positives = 173/217 (79%), Gaps = 5/217 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M N+ SGVSNCYVFKSRLQEYAQ+ +PTP+YE IKEGPSH+P F+STVIV+DVRYDS
Sbjct: 1 MTANDVSSGVSNCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK + + +S P+HE GLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS-SASELSGNS 178
QC++ E G+ QF+CTVEIG I+Y G A KTKKEAEI A RTAL+AIQS S +L+ N
Sbjct: 121 QCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKIDLANNY 180
Query: 179 AGNTQLTVLPSRKRGPEVANNPEET-VNVPKAKKGRF 214
+ +QLTVLP K+ EVA+ +ET + PKA++ +F
Sbjct: 181 S--SQLTVLPCEKKTVEVASPVKETIIKTPKARRAQF 215
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/215 (66%), Positives = 170/215 (79%), Gaps = 3/215 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M N+ SGVSNCYVFKSRLQEYAQK + TPVYET+KEGPSH+ +F+STVI++ VRY+S
Sbjct: 1 MTANDASSGVSNCYVFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK ++++C+SQP+HETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC++ E G+ QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS + N
Sbjct: 121 QCQRIETLGRATQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSESKNNLANY- 179
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRF 214
NTQLTVLP K+ +ET+ PKA+K +F
Sbjct: 180 -NTQLTVLPCEKKTLLAPIPLKETIKTPKARKAQF 213
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/211 (67%), Positives = 167/211 (79%), Gaps = 3/211 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M + + SGVSNCYVFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+S
Sbjct: 1 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK ++++C+SQP+HETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS N
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANY- 179
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAK 210
NTQLTVLP K+ + A +ETV KA+
Sbjct: 180 -NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/204 (63%), Positives = 151/204 (74%), Gaps = 19/204 (9%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SGVSNCYVFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+SLPGFFNR
Sbjct: 8 SGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR 67
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEA 127
KAAE +++C+SQP+HETGLCKNLLQEYAQKMNYAIPLYQC+K E
Sbjct: 68 KAAE----------------LSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVET 111
Query: 128 SGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS N NTQLTV
Sbjct: 112 LGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANY--NTQLTV 169
Query: 187 LPSRKRGPEVANNPEETVNVPKAK 210
LP K+ + A +ETV KA+
Sbjct: 170 LPCEKKTIQAAIPLKETVKTLKAR 193
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/216 (62%), Positives = 160/216 (74%), Gaps = 7/216 (3%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
S V NCYVFKSRLQEYAQKAG+PTP Y+T+KEGPSHEP F+S V+VD V YDSLPGFF+R
Sbjct: 6 SVVENCYVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSR 65
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQP-IHETGLCKNLLQEYAQKMNYAIPLYQCRKDE 126
KAAEQSAAEVAL+E+AK + + P + ETGLCKNLLQEYAQKMNYAIP Y + +
Sbjct: 66 KAAEQSAAEVALMEIAKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHR-Q 124
Query: 127 ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
ASG F TVEIG I+YIG AA+TKKEAEIKAARTALLAIQ + G++ G ++ V
Sbjct: 125 ASGVAPFISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQS---DGSANGASKYIV 181
Query: 187 LPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 222
+P +++ E P ET K KKG FKK+ K K
Sbjct: 182 VPGKRK--ETEKKPIETPKPLKVKKGGFKKQRNKRK 215
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/214 (62%), Positives = 156/214 (72%), Gaps = 5/214 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQ+ GIPTP Y T+KEGPSHEP F+STV V++ +Y+SLPGFF+RKA
Sbjct: 32 VENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKA 91
Query: 70 AEQSAAEVALVELAKLGKVNECISQP-IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
AEQSAAEVAL+E+A V E + P + ETGLCKNLLQEYAQKMNYAIP Y C K +AS
Sbjct: 92 AEQSAAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTK-QAS 150
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLP 188
G F C+VEIG I YIG AA+TKKEAEIKAARTALLAIQS + G + G + V+P
Sbjct: 151 GVAPFVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQS---EGGANGAKKYIVVP 207
Query: 189 SRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 222
++ E NP ET + KK +KK K K
Sbjct: 208 GQRPDKEANKNPTETPIPLRVKKRGSRKKWNKRK 241
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/214 (62%), Positives = 156/214 (72%), Gaps = 5/214 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQ+ GIPTP Y T+KEGPSHEP F+STV V++ +Y+SLPGFF+RKA
Sbjct: 756 VENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKA 815
Query: 70 AEQSAAEVALVELAKLGKVNECISQP-IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
AEQSAAEVAL+E+A V E + P + ETGLCKNLLQEYAQKMNYAIP Y C K +AS
Sbjct: 816 AEQSAAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTK-QAS 874
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLP 188
G F C+VEIG I YIG AA+TKKEAEIKAARTALLAIQS + G + G + V+P
Sbjct: 875 GVAPFVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQS---EGGANGAKKYIVVP 931
Query: 189 SRKRGPEVANNPEETVNVPKAKKGRFKKKILKMK 222
++ E NP ET + KK +KK K K
Sbjct: 932 GQRPDKETNKNPTETPIPLRVKKRGSRKKWNKRK 965
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 157/217 (72%), Gaps = 5/217 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+PTP Y T+KEGPSHEP F+STV+V++ Y+SLPGFF+RKA
Sbjct: 32 VENCYVFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKA 91
Query: 70 AEQSAAEVALVELAKLGKVNECISQP-IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
AEQSAAEVAL+E+A V E S P + ETGLCKNLLQEYAQKMNYAIP Y C K +AS
Sbjct: 92 AEQSAAEVALMEIAMSAPVAETRSIPAVQETGLCKNLLQEYAQKMNYAIPSYICTK-QAS 150
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLP 188
G F CTVEIG I+YIG AA+TKKEAEIKAARTALLAIQ + G + G + V+P
Sbjct: 151 GVAPFICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQS---EGCANGAKKYIVVP 207
Query: 189 SRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPG 225
++ E P ET K KK K+K K K G
Sbjct: 208 GQRPVKETDKKPTETPKPLKVKKRGSKRKWNKKKLVG 244
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/194 (65%), Positives = 147/194 (75%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 KRVGKEVEKMPIET 216
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 146/194 (75%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 KRVGKEVEKRPIET 216
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 146/194 (75%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 KRVGKEVEKRPIET 216
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 145/194 (74%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ Y SLPGF NRKA
Sbjct: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKP-ASG 147
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 148 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 204
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 205 KRVGKEVEKRPIET 218
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 145/195 (74%), Gaps = 6/195 (3%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLP 188
F CTVEI + +YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVP 202
Query: 189 SRKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 GKRVGKEVEKRPIET 217
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 145/194 (74%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ Y SLPGF NRKA
Sbjct: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKP-ASG 147
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 148 LAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 204
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 205 KRVGKEVEKRPIET 218
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
MPTN+GFSGVSNCYVFK RLQEYAQK G+PTP+YETIKEGPSHEP FRSTVIV+D+RYDS
Sbjct: 1 MPTNDGFSGVSNCYVFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQ 107
LPGF NRKAAEQSA EVAL+ELAK +VN+CISQP+ E G C + +Q
Sbjct: 61 LPGFLNRKAAEQSAVEVALMELAKCDEVNDCISQPVAEAG-CSSHVQ 106
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY--IGGAAKTKKEAEIK 158
+ K LQEYAQK PLY+ K+ S + F TV + DIRY + G +K AE
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFL-NRKAAEQS 73
Query: 159 AARTALLAI 167
A AL+ +
Sbjct: 74 AVEVALMEL 82
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 87/100 (87%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M + + SGVSNCYVFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+S
Sbjct: 4 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 63
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETG 100
LPGFFNRKAAEQSAAEVAL ELAK ++++C+SQP+HETG
Sbjct: 64 LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETG 103
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY--IGGAA 149
+S + + K+ LQEYAQK P+Y+ K+ S K F TV + +RY + G
Sbjct: 9 VSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFF 68
Query: 150 KTKKEAEIKAARTALLAIQSSASELS 175
+K AE AA AL + S SELS
Sbjct: 69 -NRKAAEQSAAEVALRELAKS-SELS 92
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 108/155 (69%), Gaps = 4/155 (2%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS+LQEYAQK G+ +P YE +KEG SHEP F+STV V+ Y+S PG+ ++AE +A
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A+ AL L K + P+HE+GLCKNLLQE+AQK Y +P Y+ + + FS
Sbjct: 61 AKAALDFLQK----TQFKVVPVHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFS 116
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
TVEI + Y GG AK+KKEAEIKAARTALLAIQ+
Sbjct: 117 STVEIAGVSYSGGCAKSKKEAEIKAARTALLAIQA 151
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS+LQE+AQK+G P Y++IK+G H P F+++V V+ V+Y+S GF N KAAE SA
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A+ AL L + TGLCKN+LQEYAQ+ +++P+YQ S F+
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
TVEIG + Y GG AK+KKEAE+KAARTA+LAI+ EL+G
Sbjct: 121 ATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIK----ELAG 158
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SG S + K+ LQEYAQ+ G P+Y+ GPSH F +TV + V Y ++
Sbjct: 80 SGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGTA-KSK 138
Query: 68 KAAEQSAAEVALVELAKLGKVNECIS 93
K AE AA A++ + +L EC S
Sbjct: 139 KEAEVKAARTAILAIKELAG-KECFS 163
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
GV NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRK
Sbjct: 1262 GVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 1321
Query: 69 AAEQSAAEVALVELAKLGKVNECISQPIHETGLC 102
AAEQSAAEVAL+E+ K N I + ETGLC
Sbjct: 1322 AAEQSAAEVALMEIVKSIPANANIPA-VQETGLC 1354
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 79/108 (73%), Gaps = 4/108 (3%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+ ETGLCKNLLQEYAQKMNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+A
Sbjct: 1699 VQETGLCKNLLQEYAQKMNYAIPSYICTK-SASGLAPFICTVEIGGIQYIGAAARTKKDA 1757
Query: 156 EIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEET 203
EIKAARTALLAIQ + G++ G T+ V+P ++ G EV P ET
Sbjct: 1758 EIKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVEKRPIET 1802
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 74/98 (75%), Gaps = 5/98 (5%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIH-----ETGLC 102
AEQSAAEVAL+E+ K N I H ETGLC
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLC 125
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 79/108 (73%), Gaps = 4/108 (3%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+ ETGLCKNLLQEYAQKMNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDA 528
Query: 156 EIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEET 203
EIKAARTALLAIQ + G++ G T+ V+P ++ G EV P ET
Sbjct: 529 EIKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVEKMPIET 573
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 74/98 (75%), Gaps = 5/98 (5%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIH-----ETGLC 102
AEQSAAEVAL+E+ K N I +H ETGLC
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPAVVHNSTQQETGLC 125
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 79/108 (73%), Gaps = 4/108 (3%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+ ETGLCKNLLQEYAQKMNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+A
Sbjct: 470 VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASGLAPFICTVEIGGIQYIGAAARTKKDA 528
Query: 156 EIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEET 203
EIKAARTALLAIQ + G++ G T+ V+P ++ G EV P ET
Sbjct: 529 EIKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVEKRPIET 573
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 74/98 (75%), Gaps = 5/98 (5%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIH-----ETGLC 102
AEQSAAEVAL+E+ K N I H ETGLC
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLC 125
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 78/107 (72%), Gaps = 4/107 (3%)
Query: 97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
ETGLCKNLLQEYAQKMNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AE
Sbjct: 466 QETGLCKNLLQEYAQKMNYAIPSYICTK-PASGLAPFICTVEIGGIQYIGAAARTKKDAE 524
Query: 157 IKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEET 203
IKAARTALLAIQ + G++ G T+ V+P ++ G EV P ET
Sbjct: 525 IKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVEKRPIET 568
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ Y SLPGF NRKA
Sbjct: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLC 102
AEQSAAEVAL+E+ K N I + ETGLC
Sbjct: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLC 121
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 78/107 (72%), Gaps = 4/107 (3%)
Query: 97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
ETGLCKNLLQEYAQKMNYAIP Y C K ASG F CTVEIG I+YIG AA+TKK+AE
Sbjct: 466 QETGLCKNLLQEYAQKMNYAIPSYICTK-PASGLAPFLCTVEIGGIQYIGAAARTKKDAE 524
Query: 157 IKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEET 203
IKAARTALLAIQ + G++ G T+ V+P ++ G EV P ET
Sbjct: 525 IKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVEKRPIET 568
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ Y SLPGF NRKA
Sbjct: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLC 102
AEQSAAEVAL+E+ K N I + ETGLC
Sbjct: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLC 121
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 66/74 (89%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK GI T Y T+KEGPSHEP F+STV+V++ RY+SLPGFF+RKA
Sbjct: 27 VENCYVFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKA 86
Query: 70 AEQSAAEVALVELA 83
AEQSAAEVAL+E+A
Sbjct: 87 AEQSAAEVALMEIA 100
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKE 154
+HETGLCKNLLQEYAQKMNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 155 AEIKAARTALLAIQS 169
AEI A RTALLAIQS
Sbjct: 63 AEISAGRTALLAIQS 77
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 64/71 (90%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+VFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+SLPGFFNRKAAEQS
Sbjct: 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 62
Query: 74 AAEVALVELAK 84
AAEVAL ELAK
Sbjct: 63 AAEVALRELAK 73
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
G+ + ++K+RLQEY QK+ + PVY+T+ EGP+H P FRSTV VD RY S F +RK
Sbjct: 133 GLPDNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRK 192
Query: 69 AAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
AAEQ A +AL + K K C + +T CK++L E+A K+N P Y +
Sbjct: 193 AAEQDVANLALESILKRVKDEGCPLL-LGDTVFCKSILNEFAVKVNREKPTYNTVQSPGL 251
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
V F T+ + Y G A + KKEAE AAR +L++
Sbjct: 252 LPV-FISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P + N + AE +
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFES-PNYCNTLRQAEHA 123
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL L++ G ++ + ETG+CKNLLQE AQ+ ++P+Y + F
Sbjct: 124 AAEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVF 183
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+CTVE+ ++ + G AAKTKK+AE AA A AIQ A++ G
Sbjct: 184 TCTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQLANQGRG 226
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 13/171 (7%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+RLQEY Q++ IP P+Y+T+ EG H P FRSTV+VD Y S F +RKAAEQ A
Sbjct: 24 KNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDVAR 83
Query: 77 VALVELAKLGKVNECISQPI--HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
+AL ++K K C P+ +T CK++L E+A KMN P Y + E V F
Sbjct: 84 LALEFISKKIKDEGC---PLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPV-FV 139
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLT 185
++ + Y G A + KKEAE AART +L+I GNS T L+
Sbjct: 140 SSLVFNGVTYTGDAGRNKKEAEQLAARTVILSIL-------GNSGSGTLLS 183
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 7 FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN 66
F+ ++ ++K++LQE AQ++ I P Y I+EGP H P F++TV + ++S P + N
Sbjct: 11 FAEGAHACMYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFES-PNYCN 69
Query: 67 R-KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKD 125
+ AE +AAEVAL L++ G ++ + ETG+CKNLLQE AQ+ ++P+Y +
Sbjct: 70 TLRQAEHAAAEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRS 129
Query: 126 EASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173
F+CTVE+ + + G AAKTKK+AE AA A A++ A++
Sbjct: 130 GPGHLPVFTCTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQFANQ 177
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Query: 100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIK 158
GLCKNLLQEYAQKMNYAIPLYQC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 159 AARTALLAIQS 169
A RTALLAIQS
Sbjct: 64 AGRTALLAIQS 74
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 7 FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN 66
S + +V+K+ L EY QKA I PVY+TI EG P +RSTV+VD+V Y S F N
Sbjct: 69 LSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRN 128
Query: 67 RKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDE 126
R+AAEQ AA VA ++K K ++ + LCK++L EY KM P+Y + ++
Sbjct: 129 RRAAEQDAARVAFEYISKKTK-DDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQ 187
Query: 127 ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
S F T+ + Y +TKKEAE AAR A+L++ A+
Sbjct: 188 GSVAF-FQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDAT 232
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 7 FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN 66
S + +V+K+ L EY QKA I PVY+TI EG P +RSTV+VD+V Y S F N
Sbjct: 69 LSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRN 128
Query: 67 RKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDE 126
R+AAEQ AA VA ++K K ++ + LCK++L EY KM P+Y + ++
Sbjct: 129 RRAAEQDAARVAFEYISKKTK-DDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQ 187
Query: 127 ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
S F T+ + Y +TKKEAE AAR A+L++ A+
Sbjct: 188 GSVAF-FQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDAT 232
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 81/129 (62%), Gaps = 6/129 (4%)
Query: 97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
ETGLCKNLLQEYAQKMNYAIP Y C K +ASG F C+VEIG I YIG AA+TKK AE
Sbjct: 88 QETGLCKNLLQEYAQKMNYAIPSYICTK-QASGP--FICSVEIGGILYIGAAARTKKGAE 144
Query: 157 IKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKAKKGRFKK 216
IKAARTALLAIQ SE+ N N V+P ++ E P T K KK K+
Sbjct: 145 IKAARTALLAIQGQ-SEIVANGVKN--YIVVPGQRPIKETDKKPIGTPKPLKVKKRGSKR 201
Query: 217 KILKMKRPG 225
K K K G
Sbjct: 202 KWNKRKFMG 210
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
+FK++LQE AQ++ P Y I+EGP H P F++TV + ++S PGF++ + AE +
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFES-PGFYSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGRIFTGSPGKTKKQAQKNAAMAAW 150
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFES-PSFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173
SCTVEI + + G AAKTKK+A+ AA TA A++ SE
Sbjct: 120 SCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLESE 159
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K+RLQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFES-PTFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LAK G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SCTVEI + + G ++TKK+A+ AA A A++
Sbjct: 120 SCTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALR 154
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y +I+EGP H P F++TV + ++S P F + + AE S
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHS 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL L+K G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 174
+CTVE+ + + G AKTKK+A+ AA A A++ S L
Sbjct: 120 TCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALKHFKSYL 160
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFES-PSFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SCTVEI + + G AAKTKK+A+ AA TA A++
Sbjct: 120 SCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALR 154
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K+RLQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFES-PTFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL +AK G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SC+VEI + + G ++TKK+A+ AA A A++
Sbjct: 120 SCSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALR 154
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K+RLQE+ K+GI PVY+TI EG H P FRSTV V D+ Y S F ++KAAE A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-F 133
A +AL + K + +E +S + K+++ EYA K++ P Y + + G + F
Sbjct: 61 ARLALESILKRTR-DEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
++ Y G A+TKKEAE AA+ A+L+I +S
Sbjct: 120 ITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSS 158
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 9/166 (5%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQ 72
+++K++LQ YAQK +P P+Y GPSH F+S V +++ Y+S P FF K AE
Sbjct: 157 HLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYES-PDFFPTLKDAEH 215
Query: 73 SAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
+AA++AL+ L+ G + + G+ KNLLQE A+K Y +P+Y K S
Sbjct: 216 AAAKLALMSLSPAGFQED-------DYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPT 268
Query: 133 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
F TVEI ++G AKTKK AE+ AA+ A ++ S L+ S
Sbjct: 269 FLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERRSNLNHKS 314
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K+RLQEY Q+ + P+Y+T+ EG H+P FRSTV+VD Y S F +RK AEQ
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 75 AEVALVELAKLGKVNECISQPIHE-TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
A++AL + + K + HE T CK++L EYA KM +P Y K +
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFV 132
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
S +V G + Y G +TKKEAE AAR A+L++
Sbjct: 133 SSSVFNG-VTYNGDIGRTKKEAEQLAARAAVLSL 165
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K+RLQE AQ++ P Y I+EGP H P F+ TV + ++S P F + + AE +
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFES-PTFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA G ++ + ETG+ KNLLQE A + +P+Y+ + F
Sbjct: 60 AAEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
CTVEI + + G A+TKK+A+ AA +A S+ +LS N
Sbjct: 120 YCTVEIAGMHFTGDPARTKKQAQKNAA----IAAWSALRKLSAN 159
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 72
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 73 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 132
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + + G KTKK+A+ AA A
Sbjct: 133 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 163
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F+STV + ++S P F++ + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFES-PTFYSTLRLAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA G I+ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SC VE+ + + G +A+TKK+A+ AA A A++
Sbjct: 120 SCNVELAGMSFTGESARTKKQAQKNAAMAAWSALK 154
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFES-PAFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGKTFTGNPGKTKKQAQKNAAMAAW 150
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y+TI+EGP H F+S V VD ++S F K AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 76 EVALVELAKLGKVNECIS-QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
++AL+ L + +E + QP+ KNLLQE AQK +++P+Y D + F
Sbjct: 147 KLALMSLPQEASSSEQVPVQPLSY----KNLLQELAQKHGFSLPVYSTTSDGSVQVPMFK 202
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TV D + G A TKK+AE+ AAR A
Sbjct: 203 STVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS- 73
++KSRLQE Q+ P Y GP+H P F +TV V+ V + + P R A E
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRT-PEDAARSAKEAHN 59
Query: 74 -AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AA+ A L+ L K+ LQ YAQK +P YQ ++ +
Sbjct: 60 IAAKAAFDHLSSLPLPPPPPPS--ENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASR 117
Query: 133 FSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
F V + G T KEAE AA+ AL+++ AS
Sbjct: 118 FKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEAS 158
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K+RLQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL A+ G ++ + ETG+ KNLLQE A + +P+Y + +
Sbjct: 60 AAEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNY 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SCTVEI + + G A+TKK+A+ AA A A++
Sbjct: 120 SCTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALR 154
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFES-PAFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNTLASRGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
SCTVE+ + + G A+TKK+A+ AA A A++
Sbjct: 120 SCTVELAGMSFTGEPARTKKQAQKNAAMAAWSALK 154
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F N + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFES-PTFCNTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL L+K G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTV+I + + G AKTKK+A+ AA A A++
Sbjct: 120 FCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALK 154
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNT-------QLTV- 186
TVE+ I + G AK KK+AE AA A +++ A E + NS+ T Q+T+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE-AANSSSETENNDELEQITIA 179
Query: 187 ---LPSR-KRGPEVANNPEETVNVPK 208
L R K +AN+P T++ PK
Sbjct: 180 RALLNYRLKEKMAIANSPSGTLSFPK 205
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y+TI+EGP H F+S V VD ++S F K AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 76 EVALVELAKLGKVNECIS-QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
++AL+ L + +E + QP+ KNLLQE AQK +++P+Y D + F
Sbjct: 147 KLALMSLPQEASSSEQVPVQPLSY----KNLLQELAQKHGFSLPVYSTTSDGSVQVPMFK 202
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TV D + G A TKK+AE+ AAR A
Sbjct: 203 STVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS- 73
++KSRLQE Q+ P Y GP+H P F +TV V+ V + + P R A E
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRT-PEDAARSAKEAHN 59
Query: 74 -AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AA+ AL L+ L + K+ LQ YAQK +P YQ ++ +
Sbjct: 60 IAAKAALDHLSSLPLPPPPPPSENQSS--YKSQLQIYAQKKGKLLPSYQTIREGPGHASR 117
Query: 133 FSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
F V + G T KEAE AA+ AL+++ AS
Sbjct: 118 FKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEAS 158
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + S+ + ETG+ KNLLQE AQ++ +P Y + + F+
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
TVE+ I + G AK KK+AE AA A +++ A E S +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSS 163
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y+TI+EGP H F+S V VD ++S F K AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 76 EVALVELAKLGKVNECIS-QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
++AL+ L + +E + QP+ KNLLQE AQK +++P+Y D + F
Sbjct: 147 KLALMSLPQEASSSEQVPVQPLS----YKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFK 202
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TV D + G A TKK+AE+ AAR A
Sbjct: 203 STVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA--AEQ 72
++KSRLQE Q+ P Y G +H P F +TV V+ V + + P R A A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRT-PEDAARSAKEAHN 59
Query: 73 SAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AA+ A L+ L + K+ LQ YAQK +P YQ ++ +
Sbjct: 60 IAAKAAFDHLSSLPLPPPPPPSENQSS--YKSQLQIYAQKKGKLLPSYQTIREGPGHASR 117
Query: 133 FSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
F V + G T KEAE AA+ AL+++ AS
Sbjct: 118 FKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEAS 158
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 88/156 (56%), Gaps = 9/156 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK RLQEY QK P PVY+T+ EG H P F+ TV V+ RYDS PGF ++K A+ +A
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGKV 131
AE A+ +L G + PI E L KN+L++ A K N P Y+ K+ +
Sbjct: 61 AEAAVKKLVNQGLL------PIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCP 114
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
F+ VEI Y G A +KK+A KAA A+ AI
Sbjct: 115 TFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI 150
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + F+
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 191
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 192 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 225
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + F+
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 154
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFES-PVFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + G KTKK+A+ AA A
Sbjct: 120 ACTVELAGKAFTGNPGKTKKQAQKNAAMAAW 150
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + F+
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 123
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A A++
Sbjct: 124 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALK 157
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F++TV + ++S F + AE +A
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L++ G ++ + ETG+ KNLLQE AQ+ +P+Y + F+
Sbjct: 64 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 123
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVL 187
CTV +G + + G AAKTKK+AE AA TA +++ A + G T T+L
Sbjct: 124 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQ------GGTSATLL 170
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P FR+ V + ++ G + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P Y + FS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
TVE+ + + G A+TKK+AE AA A +++ S S
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQSTS 158
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F N + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFES-PTFCNTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL L+K G ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTV+I + + G AKTKK+A+ AA A A++
Sbjct: 120 FCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALK 154
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + + F+
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
TVE+ I + G AK KK+AE AA A +++ A E S +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSS 163
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + F+
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G AKTKK+AE AA A A++
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 154
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++ + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + + F+
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
TVE+ I + G AK KK+AE AA A +++ A E + +S+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEDASSSS 165
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + +D + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
TVE+ + + G AKTKK AE AA A +++ S
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQS 156
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y ++EGP H P F+++V + ++S + AE +A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + F+
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G AKTKK+AE AA A A++
Sbjct: 124 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 157
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFES-PTFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P Y + F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGRIFTGNPGKTKKQAQKNAAMAAW 150
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNT-------QLTV- 186
TVE+ I + G AK KK+AE AA A +++ A E + NS+ T Q+T+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKE-AANSSSETENNDELEQITIA 179
Query: 187 ---LPSR-KRGPEVANNPEETVNVPK 208
L R K +AN+P T++ PK
Sbjct: 180 RALLNYRLKEKMAIANSPSGTLSFPK 205
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F+++V + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS--SASELSGNSAGNTQLTVLPSRKR 192
CTVE+ + + G +AKTKK+AE AA A +++ S L G + + SR R
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPSLDPLRGEEKEQEVVARVLSRFR 180
Query: 193 GPEV 196
EV
Sbjct: 181 PKEV 184
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFES-PVFCSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTA 163
+CTVE+ + G KTKK+A+ AA A
Sbjct: 120 ACTVELAGKAFTGNPGKTKKQAQKNAAMAA 149
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGP 194
VE+ I + G AK KK+AE AA A +++ A E + +S
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSST--------------- 165
Query: 195 EVANNPE-ETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQ 253
E NN E E + + +A K+ + M P R+ Q ++NI + S S
Sbjct: 166 EPENNDELEQITIARALLNYRLKEKMSMSNPNARIP---FQKKFQIQNIRPT---SSQSP 219
Query: 254 ANTSGI 259
A TS I
Sbjct: 220 ATTSKI 225
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F+++V + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P FR+ V + ++ G + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P Y + FS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQ 183
TVE+ + + G A+TKK+AE AA A +++ AG+ Q
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPEARKEPGAGDEQ 169
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 25/184 (13%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+++K++LQ ++QK G+ P+Y ++GP H FR V +D Y+SL K AE +
Sbjct: 3 HLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ- 132
A+VAL+ L + G +Q ++GL KNLLQE AQK +P Y + SG+V
Sbjct: 63 VAKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQ---SGEVHV 113
Query: 133 --FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F TV++G+ + G ++TKK+AE+ AA+ A I+ + +S +R
Sbjct: 114 PVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSIS-------------TR 160
Query: 191 KRGP 194
KR P
Sbjct: 161 KRAP 164
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++K+ LQE AQK G+ P Y T + G H P F STV V + ++ P +K A
Sbjct: 80 SDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTVKVGEENFEGKPS-RTKKQA 138
Query: 71 EQSAAEVALVEL 82
E SAA+VA +
Sbjct: 139 EMSAAKVAYFTI 150
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P FR+ V + ++ G + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P Y + FS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQ 183
TVE+ + + G A+TKK+AE AA A +++ AG+ Q
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPEARKEPGAGDEQ 169
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
VE+ I + G AK KK+AE AA A A++ A E + +S
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSS 164
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 11/205 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA---GNTQL------- 184
TVE+ I + G AK KK+AE AA A +++ A E + +S+ N +L
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASSSSETENNDELEQITIAR 180
Query: 185 TVLPSR-KRGPEVANNPEETVNVPK 208
+L R K +AN+P T++ PK
Sbjct: 181 ALLNYRLKEKMAIANSPSGTLSFPK 205
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 25/184 (13%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+++K++LQ ++QK G+ P+Y ++GP H FR V +D Y+SL K AE +
Sbjct: 202 HLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENA 261
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ- 132
A+VAL+ L + G +Q ++GL KNLLQE AQK +P Y + SG+V
Sbjct: 262 VAKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQ---SGEVHV 312
Query: 133 --FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F TV++G+ + G ++TKK+AE+ AA+ A I+ + +S +R
Sbjct: 313 PVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSIS-------------TR 359
Query: 191 KRGP 194
KR P
Sbjct: 360 KRAP 363
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++K+ LQE AQK G+ P Y T + G H P F STV V + ++ P +K A
Sbjct: 279 SDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTVKVGEENFEGKPS-RTKKQA 337
Query: 71 EQSAAEVALVEL 82
E SAA+VA +
Sbjct: 338 EMSAAKVAYFTI 349
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE + P Y +K+G H+P F +TV VD ++ S + K A+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 75 AEVAL 79
A++A
Sbjct: 61 AKLAF 65
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 29/182 (15%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P + N + AE +
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFES-PNYCNTLRQAEHA 288
Query: 74 AAEVALVELAKLGKVNECISQPI---------------------------HETGLCKNLL 106
AAEVAL L++ G ++ + ETG+CKNLL
Sbjct: 289 AAEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLL 348
Query: 107 QEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA 166
QE AQ+ ++P+Y + F+CTVE+ + + G AAKTKK+AE AA A A
Sbjct: 349 QETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSA 408
Query: 167 IQ 168
++
Sbjct: 409 LK 410
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + +D + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
TVE+ + + G AKTKK AE AA A +++
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLK 154
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + +D + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
TVE+ + + G AKTKK AE AA A +++
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLK 154
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + +D + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
TVE+ + + G AKTKK AE AA A +++
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLK 154
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 19/241 (7%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + +++ + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AE AL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGP 194
VE+ I + G AK KK+AE AA A A++ A E + +S
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSST--------------- 165
Query: 195 EVANNPE-ETVNVPKAKKGRFKKKILKMKRPGGRM---DRTQLQNTGNMENINASQEGSK 250
E NN E E + + +A K+ + M P + +R Q+QN + + SK
Sbjct: 166 EPENNDEVEQITIARALLNYRLKEKMTMSNPNAPLPFHERFQIQNPRPISSQPPPATSSK 225
Query: 251 V 251
+
Sbjct: 226 I 226
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + + + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P Y + F+
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFA 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS--SASELSGNSAG 180
+VE+ + + G AA+TKK+AE AA TA A++ A + GN G
Sbjct: 121 SSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQMPEARKEPGNGCG 168
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEV+L L+ ++ + ETG+ KNLLQE A + +P+Y + + FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
CTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 121 CTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRMSS 158
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEV+L L+ ++ + ETG+ KNLLQE A + +P+Y + + FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
CTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEV+L L+ ++ + ETG+ KNLLQE A + +P+Y + + FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLK 154
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 92/154 (59%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F++TV + ++S F + AE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L++ G ++ + ETG+ KNLLQE AQ+ +P+Y + F+
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTV +G + + G AAKTKK+AE AA TA +++
Sbjct: 121 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLK 154
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
TVE+ I + G AK KK+AE AA A +++ A E + +S
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSS 164
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 1/164 (0%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ+ P+Y I++GP H P FR+TV + ++S + AE A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVA+ L+K G +++ + +TG+ KNLLQE A + ++P+Y + + F
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL-SGN 177
C V++ R+ G A TKK+AE A A A++ S ++ SGN
Sbjct: 121 CIVDVFGTRFNGKPAATKKQAEQNTAMAAWSALKQSEKDVDSGN 164
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ + ++ + ETG+ KNLLQE AQ++ +P Y + F+
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
TVE+ I + G AK KK+AE AA A +++ A E + +S
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSS 164
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 2/160 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ VI + +++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +P Y + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173
+CTVE+ I + G AK KK+AE AA A +++ A E
Sbjct: 120 TCTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQLARE 159
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 77/142 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P +EGP H P F++TV + +D + AE +A
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 135 CTVEIGDIRYIGGAAKTKKEAE 156
TVE+ + + G AKTKK AE
Sbjct: 144 STVELAGMSFAGDPAKTKKHAE 165
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ V + +++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +PLY + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+CTVE+ I + G AK KK+AE AA A A++
Sbjct: 120 TCTVELAGITFTGDPAKNKKQAEKNAASAAWSALK 154
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ V + +++S PGFF+ + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFSTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +PLY + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+CTVE+ I + G AK KK+AE AA A A++
Sbjct: 120 TCTVELAGITFTGDHAKNKKQAEKNAASAAWSALK 154
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ V + +++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +PLY + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+CTVE+ I + G AK KK+AE AA A A++
Sbjct: 120 TCTVELAGITFAGDPAKNKKQAEKNAASAAWSALK 154
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTV-----IVDDVRYDSLPGFFNRKA 69
++K++LQE AQ++ P Y I+EGP H P F++TV I + +Y S +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCS-----TLRQ 55
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AE SAAEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y +
Sbjct: 56 AEHSAAEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
F+ VE+ I + G AK KK+AE AA A A++ A
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLA 157
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTV-----IVDDVRYDSLPGFFNRKA 69
++K++LQE AQ++ P Y I+EGP H P F++TV I + +Y S +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCS-----TLRQ 55
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AE SAAEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y +
Sbjct: 56 AEHSAAEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
F+ VE+ I + G AK KK+AE AA A A++ A
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLA 157
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK+ L ++A K+ + P + + EG P +RS+V+VD + + S FF+RKAAEQ
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A AL L K K +E S CK +L EYA K++ +P Y+ + + F
Sbjct: 87 ARFALEYLTKKVK-DEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPY-FV 144
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
CT+++ Y G AA+ KK+A AAR A+L+I
Sbjct: 145 CTLDLNGTSYTGDAARRKKDAVELAARAAILSI 177
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 28/200 (14%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA + + PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AA++A +++A KNLLQE AQK + +P Y S F
Sbjct: 63 AAKIAGIDVA------------------YKNLLQEIAQKESSLLPFYATATSGPSHAPTF 104
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKR- 192
+ TVE + G AKTKK AE+ AA+ A ++I++ S +G+ LPS ++
Sbjct: 105 TSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSP-------TLPSERQE 157
Query: 193 --GPEVANNPEETVNVPKAK 210
V ++P+E + P +K
Sbjct: 158 DVNSNVKSSPQEIHSQPSSK 177
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA + + PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
AA++A+ L P G+ KNLLQE AQK + +P Y S
Sbjct: 63 AAKIAVASLT-----------PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHA 111
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G+ LPS
Sbjct: 112 PTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSP-------TLPSE 164
Query: 191 KR---GPEVANNPEETVNVPKAK 210
++ V ++P+E + P +K
Sbjct: 165 RQEDVNSNVKSSPQEIHSQPSSK 187
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA + + PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
AA++A+ L P G+ KNLLQE AQK + +P Y S
Sbjct: 63 AAKIAVASLT-----------PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHA 111
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G+ LPS
Sbjct: 112 PTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSP-------TLPSE 164
Query: 191 KR---GPEVANNPEETVNVPKAK 210
++ V ++P+E + P +K
Sbjct: 165 RQEDVNSNVKSSPQEIHSQPSSK 187
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA + + PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
AA++A+ L P G+ KNLLQE AQK + +P Y S
Sbjct: 63 AAKIAVASLT-----------PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHA 111
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G+ LPS
Sbjct: 112 PTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSP-------TLPSE 164
Query: 191 KR---GPEVANNPEETVNVPKAK 210
++ V ++P+E + P +K
Sbjct: 165 RQEDVNSNVKSSPQEIHSQPSSK 187
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y I G H P F+S V +D ++S K AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
+VAL+ L + + + P + KNLLQE QK + +P+Y D ++ F
Sbjct: 155 KVALMSLPQEANPTQQLLLP---SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TVEI + + G TKK+AE+ AA++A
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAF 240
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KSRLQE QK P+YE +EGP+H P FR+TV+V+ R+ S R E+S
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSS------RDEGEKSL 54
Query: 75 AEVALVELAKLGKVNECISQPIH--------------ETGL-CKNLLQEYAQKMNYAIPL 119
E LA + + I+ P ET L K+ LQ YAQK +P
Sbjct: 55 KEA--YNLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPS 112
Query: 120 YQCRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
Y+ + F V I G T KEAE AA+ AL+++ A+
Sbjct: 113 YRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANP----- 167
Query: 179 AGNTQLTVLPS 189
TQ +LPS
Sbjct: 168 ---TQQLLLPS 175
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y I G H P F+S V +D ++S K AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
+VAL+ L + + + P + KNLLQE QK + +P+Y D ++ F
Sbjct: 155 KVALMSLPQEANPTQQLLLP---SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TVEI + + G TKK+AE+ AA++A
Sbjct: 212 TVEIHGVTFHGKPGNTKKQAEMNAAKSAF 240
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KSRLQE QK P+YE +EGP+H P FR+TV+V+ R+ S R E+S
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSS------RDEGEKSL 54
Query: 75 AEVALVELAKLGKVNECISQPIH--------------ETGL-CKNLLQEYAQKMNYAIPL 119
E LA + + I+ P ET L K+ LQ YAQK +P
Sbjct: 55 KEA--YNLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPS 112
Query: 120 YQCRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
Y+ + F V I G T KEAE AA+ AL+++ A+
Sbjct: 113 YRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANP----- 167
Query: 179 AGNTQLTVLPS 189
TQ +LPS
Sbjct: 168 ---TQQLLLPS 175
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y I G H P F+S V +D ++S K AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
+VAL+ L + + + P + KNLLQE QK + +P+Y D ++ F
Sbjct: 155 KVALMSLPQEANPTQQLLLP---SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TVEI + + G TKK+AE+ AA++A
Sbjct: 212 TVEIRGVTFHGKPGNTKKQAEMNAAKSAF 240
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KSRLQE QK P+YE +EGP+H P FR+TV+V+ R+ S R E+S
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSS------RDEGEKSL 54
Query: 75 AEVALVELAKLGKVNECISQPIH--------------ETGL-CKNLLQEYAQKMNYAIPL 119
E LA + + I+ P ET L K+ LQ YAQK +P
Sbjct: 55 KEA--YNLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPS 112
Query: 120 YQCRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNS 178
Y+ + F V I G T KEAE AA+ AL+++ A+
Sbjct: 113 YRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANP----- 167
Query: 179 AGNTQLTVLPS 189
TQ +LPS
Sbjct: 168 ---TQQLLLPS 175
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F+++V + ++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +P Y + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173
+CTVE+ I + G AK KK+AE AA A +++ A E
Sbjct: 120 TCTVELAGIIFTGDHAKNKKQAEKNAASAAWASLKQLARE 159
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN--RKAAEQ 72
++K++LQE AQ++ P Y I+EGP H P F++ V + ++S P + + R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFES-PNYCSTLRQAEHA 59
Query: 73 SAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
+A V L++ G ++ + ETG+ KNLLQE AQ+ N +P Y +
Sbjct: 60 AAELALNV-LSRRGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPV 118
Query: 133 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS 175
F+C VE+ + + G A KTKK+AE AA A ++ A +L+
Sbjct: 119 FTCVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAKKLA 161
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ V + +++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +P Y + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+CTVE+ I + G AK KK+AE AA A +++
Sbjct: 120 TCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLR 154
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 86/154 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +I+EGP+H P F++T+ + +++ + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEV L L+ G + ++ + ETG+ KNL+QE AQ++ +P Y + F
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
VE+ I + G AK KK+AE AA A A++
Sbjct: 121 RIVELTGITFTGEPAKNKKQAEKNAAMAAWSALK 154
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K++LQEYAQK G P Y I G P F+S V +D ++S K AE +AA
Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAA 153
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
+VAL+ L + + + P + KNLLQE+ QK + +P Y D ++ F
Sbjct: 154 KVALMFLPQEAGPTQQLPLP---SVSYKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFIS 210
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TVEI + G TKK+AE+ AA+ A
Sbjct: 211 TVEIQGATFRGEPGNTKKQAEMNAAKIAF 239
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP--GFFNRKAAEQ 72
++KSRLQE QK PVYE +EGP+H P FR+TV+V+ + S P G + K A
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSS-PDEGERSVKEACN 59
Query: 73 SAAEVALVELAKLGKVNECISQPIHETGL-----CKNLLQEYAQKMNYAIPLYQCRKDEA 127
AA A L+ L + KN LQEYAQK +P Y+ +
Sbjct: 60 LAAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGS 119
Query: 128 SGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTV 186
F V I G +T KEAE AA+ AL+ + AG TQ
Sbjct: 120 LRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLP--------QEAGPTQQLP 171
Query: 187 LPS 189
LPS
Sbjct: 172 LPS 174
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FKS+LQ YAQK PVY + GP H F+ V V+ ++SL F AE +A
Sbjct: 87 LFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAEHAA 146
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A+ AL+ L G V E + E+G KNLLQE AQ+ +P Y K + F
Sbjct: 147 AKAALMSLLPNG-VEEVSFLFMDESGY-KNLLQELAQREGCGLPTYSTNKSGEAHVPTFI 204
Query: 135 CTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
TVEI G+I + G AKTKK+AE+ AA+TA A++
Sbjct: 205 STVEIEGEI-FTGQGAKTKKQAEMSAAKTAYTALK 238
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS+LQE Q+ P YE+ ++G +H P F +TV V+++ + S K A+ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A++A + L K+ LQ YAQK N+A+P+Y C + +F
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 135 CTVEI 139
C V +
Sbjct: 121 CKVTV 125
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
S + + Y+ K+RLQ +A++ TP+Y+ EG SH+P F TV V D ++ S F +
Sbjct: 51 SAIPDKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRK 110
Query: 68 KAAEQSAAEVALVELAKLGK--VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQ---- 121
K AEQ AA VA L + + V E + CK++L E+A K +P Y
Sbjct: 111 KEAEQDAARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCV 170
Query: 122 CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR-----------TALLAIQSS 170
C K + F+ V Y G +A KK+AE AAR T ++ I S
Sbjct: 171 CLKKPLT---LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHDTCMVRIVRS 227
Query: 171 ASEL--SGNSAGNTQLTVLP 188
+L + S+GNT T P
Sbjct: 228 KKQLITAVRSSGNTPATFTP 247
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 141/341 (41%), Gaps = 62/341 (18%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA K + PVY +EGP H P FR V + SL F K+AE +
Sbjct: 3 HVYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AA++AL L ++ + AQK N +P+Y S F
Sbjct: 63 AAKIALASLTP------------------QSPEAKIAQKENSMLPVYATATSGPSHSPTF 104
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI------QSSASELSGNSAGNTQLTVL 187
TVE + G AKTKK AE+ AA+ A ++I Q+S+ LS V
Sbjct: 105 ISTVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIKNGNSNQTSSPSLSCERQEAASSNVK 164
Query: 188 PSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKR---------PGGRMDRTQL----- 233
S + E+ + P + V P A K++K+ P +
Sbjct: 165 SSLQ---EIHSQPSKVVMTPDA-----PSKLMKVSEDEFPDLHSAPASNAKEINVALHVP 216
Query: 234 QNTGNMENINA-SQEGSKVS-QANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPA 291
+N N +NA + +G K++ A++S I T V+ + S I+R + A
Sbjct: 217 ENPANDGTLNAPTTDGMKMNIAASSSPIPQNPTNVVTLNA--------SSTNGIKRNIAA 268
Query: 292 VNDALPHHIGGD-SETIHSAATHCSDRSSNEASEMGTSSLA 331
+ +P H D SET + C D S + MGT L+
Sbjct: 269 CSSRMPQHPTNDGSET-----SSCVDESEKKKLIMGTGHLS 304
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
Y+ K+RLQ +A++ PVY+ EG SH+P FR TV V ++ S F +K AEQ
Sbjct: 46 YMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQD 105
Query: 74 AAEVALVELAKLGK--VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV 131
AA +A L+ +G+ + E + CK++L E+A K P Y E +
Sbjct: 106 AARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYIEKPLTL 165
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
F+ V Y G +A+ KK+AE AAR + +I
Sbjct: 166 -FAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSI 200
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK P Y+TI+ GP H P FRSTV +D ++S + K AE +AA
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAAA 173
Query: 76 EVALVELAKLGKVNE--------CISQPIHETGLCKNL---LQEYAQKMNYAIPLYQCRK 124
VAL+ L++ +E CIS P G+ N LQ YAQK +P Y+ +
Sbjct: 174 RVALMSLSQEANPSEQMLVGSASCISLP----GIQINHKLQLQIYAQKRGKQLPKYRRTQ 229
Query: 125 DEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ S F TV I G +T KE+E AA AL+++
Sbjct: 230 EGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSL 273
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY---DSLPGFFNR 67
S+ +FK++L + Q+ P P Y EGP+H FR+TV V+ Y D G
Sbjct: 23 SSAAMFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTA 82
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGL-CKNLLQEYAQKMNYAIPLYQCRKDE 126
K A AA+ A L+ L S ET L K+ LQ YAQK + +P Y ++
Sbjct: 83 KEAHNLAAKAAFERLSALPPPPPPQS----ETQLPYKSQLQVYAQKRHKDLPSYDTIRNG 138
Query: 127 ASGKVQFSCTVEIGDIRYIGGA--AKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQL 184
F TV I D R T KEAE AAR AL+++ A+ G+
Sbjct: 139 PPHAPLFRSTVTI-DGRTFESPQDYHTTKEAEFAAARVALMSLSQEANPSEQMLVGSASC 197
Query: 185 TVLP 188
LP
Sbjct: 198 ISLP 201
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 2 PTNEGFSGVSNCYVF-------KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVD 54
P+ + G ++C K +LQ YAQK G P Y +EGPSH P F+STV +D
Sbjct: 186 PSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEGPSHAPLFKSTVTID 245
Query: 55 DVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECIS 93
++S K +E +AA +AL+ L + G ++ +S
Sbjct: 246 GQTFESPQYCQTIKESENAAANLALMSLTQEGHSSKPVS 284
>gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
Length = 318
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 6/76 (7%)
Query: 117 IPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS 175
IP Y+C R D S + F+CTV++G ++YIG AA+TKKEAEIKAARTALLA+QS S
Sbjct: 1 IPQYECERYDSESKIISFTCTVDVGGMKYIGAAARTKKEAEIKAARTALLAVQS-----S 55
Query: 176 GNSAGNTQLTVLPSRK 191
G + + TV+P +K
Sbjct: 56 GFAPNYSSYTVVPMKK 71
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+RLQE AQ+A PVY T K+G H+P FRSTV V ++ S K AEQ AA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 76 EVAL-VELAKL----GKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
VA + +AK+ V + + + CK++L E+A K P Y + +
Sbjct: 90 RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149
Query: 131 VQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ F +V Y G AA +KK+AE KAAR A+ +I
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSI 187
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPI--HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AEVAL L+ G ++ + ETG+ KNLLQE A + +P Y +
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 133 FSCTVEIGDIRY 144
F+CTVE+ + +
Sbjct: 121 FTCTVELAGMNF 132
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 3 TNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP 62
T+E F G+ ++FK++LQ YAQK PVY + GP H F+ V V+ Y+S
Sbjct: 125 TDESFGGI--LHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESRE 182
Query: 63 GFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQC 122
F AE +AA+ AL+ L G V E E+G KNLLQ+ AQ+ +P Y
Sbjct: 183 YFPTLSKAENAAAKAALMSLLPNG-VEE------DESGY-KNLLQDMAQREGCGLPTYFT 234
Query: 123 RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA 166
K + F TVEI + + G A+ KK+AE+ AA+ A A
Sbjct: 235 EKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAKIAYTA 278
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS+LQ+ +Q+ G P YE KEG H P F +TV VD + + + K A+ +A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 75 AEVA 78
A++A
Sbjct: 61 AKLA 64
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQEY Q+A P+Y T +G H+ F+STV+VD + S K AEQ AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 76 EVALVELAKLGK-------VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
+VA L + + V E I Q + K++L EY K P Y K E S
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQ---DVVFSKSILHEYTTKTKTDQPEYSVTKTEGS 155
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ +V Y GGAA+ KK+AE KAAR A+ ++
Sbjct: 156 V-TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQEY Q+A P+Y T +G H+ F+STV+VD + S K AEQ AA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 76 EVALVELAKLGK-------VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
+VA L + + V E I Q + K++L EY K P Y K E S
Sbjct: 97 KVAYDTLLERKETETDDTDVFELIDQ---DVVFSKSILHEYTTKTKTDQPEYSVTKTEGS 153
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ +V Y GGAA+ KK+AE KAAR A+ ++
Sbjct: 154 V-TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 22/191 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+RLQ +A++ TP+Y+ EG SH+P F TV V D ++ S F +K AEQ AA
Sbjct: 3 KNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAAR 62
Query: 77 VALVELAKLGK--VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQ----CRKDEASGK 130
VA L + + V E + CK++L E+A K +P Y C K +
Sbjct: 63 VAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT-- 120
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR-----------TALLAIQSSASEL--SGN 177
F+ V Y G +A KK+AE AAR T ++ I S +L +
Sbjct: 121 -LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHDTCMVRIVRSKKQLITAVR 179
Query: 178 SAGNTQLTVLP 188
S+GNT T P
Sbjct: 180 SSGNTPATFTP 190
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 19/157 (12%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQSAA 75
K LQ YA+K + PV+ TIK H +++TV++D+ ++S P FFN K AEQ+AA
Sbjct: 124 KKHLQNYARKNNLDPPVF-TIKTERLH---YKATVVIDEKSFES-PTFFNSIKEAEQAAA 178
Query: 76 EVALVEL---AKLGKVNE-CISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV 131
++AL EL L + +E C S K+LL E Q+ Y+ P Y + +
Sbjct: 179 KIALRELPISVDLFQKDESCPS---------KSLLLELTQREGYSKPTYTTIESGSLHMR 229
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+ TVE+ +++ G A+++KK+A+I AA+ A +A++
Sbjct: 230 TYFSTVEVEGLKFHGKASRSKKQADIDAAKIAYIALK 266
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 40/186 (21%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQ+ + P Y +GP H+P F ++V V+ V + S F + K A+ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 75 AEVA-------LVELAKLGKVNECISQPIHETG--------------------------- 100
A A L E A + S P E G
Sbjct: 61 AMKAFRNFTSPLSEFAIRLIRRDGFSIPTDEYGSKEKVEATKPQESPLPAQSPVIRTDTN 120
Query: 101 -LCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGA-AKTKKEAEIK 158
L K LQ YA+K N P++ + + ++ + TV I + + + KEAE
Sbjct: 121 RLSKKHLQNYARKNNLDPPVFTIK----TERLHYKATVVIDEKSFESPTFFNSIKEAEQA 176
Query: 159 AARTAL 164
AA+ AL
Sbjct: 177 AAKIAL 182
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ K++LQ+ A + G P Y + ++GP H P F++ V + ++S P F+ Q+
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFES-PDFYG--TLRQAE 322
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A V L L K E S I E+ + KN LQE+AQK P Y + S F
Sbjct: 323 HAAAAVALKSLTK--EGFS--IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFK 378
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAG 180
TV+ + G A +KK+AE AA A A+++ + + + G
Sbjct: 379 STVKFAGTTFAGKEANSKKQAEKNAAMAAWSAVKNDSPDSEDTNTG 424
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 3 TNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTV 51
T EGFS + ++K+ LQE+AQK GIP P Y T + GPSH P F+STV
Sbjct: 334 TKEGFS-IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTV 381
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
+FK+RLQE AQK + P Y++ +EGP H P F++TV + ++S P F K A+ +
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFES-PAFCKTAKEAQNA 59
Query: 74 AAEVALVELAKLGKVNE 90
AAE AL L LGK +
Sbjct: 60 AAEFALEVL--LGKAEQ 74
>gi|330541634|gb|AEC32111.1| hypothetical protein [Camellia sinensis]
Length = 248
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 150 KTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVANNPEETVNVPKA 209
K KKEAEIKAARTALLAIQ+S SE + + GN+ TV+PS+K+ + +ET K
Sbjct: 37 KRKKEAEIKAARTALLAIQTSGSESNEKATGNSMYTVIPSKKKATDSGIGTQETATALKP 96
Query: 210 KKGRFKKKILKMKRPGGRMDRTQLQNTGNMENINASQEGSKVSQANT-SGIQGVSTE 265
KK FKKK + + G + + +++NTGN+E + +EG ++ AN SG+ + T+
Sbjct: 97 KKSPFKKKSQRKRHVGDKGNHIKVENTGNLEVLIDDREGQQLDHANADSGLLTLETK 153
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K + Q YA K + +PV+ EGP + + +TV+VD + S F RK AEQ+A +
Sbjct: 147 KLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQ 206
Query: 77 VALVELAKLG---KVNECISQP---------IHETGLCKNLLQEYAQKMNYAIPLYQCRK 124
+ + A+ K + +P +ET K+LLQE Q+ +IP Y+ +
Sbjct: 207 IVDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKSTR 266
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
F TVE+ + + G A+ +KKEAE AA+ A A++
Sbjct: 267 TGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALK 310
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
++KSRLQE+ + P Y +I +GP H P F+ +V V+ + + S F + K A
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 74 AAEVALVELA 83
AA AL+ +
Sbjct: 93 AAMKALLNFS 102
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 22/185 (11%)
Query: 23 YAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL 82
+A++ TP+Y+ EG SH+P F TV V D ++ S F +K AEQ AA VA L
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
Query: 83 AKLGK--VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQ----CRKDEASGKVQFSCT 136
+ + V E + CK++L E+A K +P Y C K + F+
Sbjct: 137 TTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT---LFAAI 193
Query: 137 VEIGDIRYIGGAAKTKKEAEIKAAR-----------TALLAIQSSASEL--SGNSAGNTQ 183
V Y G +A KK+AE AAR T ++ I S +L + S+GNT
Sbjct: 194 VVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHDTCMVRIVRSKKQLITAVRSSGNTP 253
Query: 184 LTVLP 188
T P
Sbjct: 254 ATFTP 258
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 46/155 (29%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+++K++LQ YAQK +P P+Y GPSH F+S DD
Sbjct: 181 HLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSK---DDY----------------- 220
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
G+ KNLLQE A+K Y +P+Y K S F
Sbjct: 221 --------------------------GVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTF 254
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
TVEI ++G AKTKK AE+ AA+ A ++
Sbjct: 255 LSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLK 289
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+RLQE + P Y T K+GP H P F +TV V + + + + K A+ +AA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 77 VALVEL 82
+A+ L
Sbjct: 72 LAIQYL 77
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 10/156 (6%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
++FK++LQ YAQK PVY + GP H F+ V V+ Y+S F AE +
Sbjct: 3 HLFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAELA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGL-CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AA+ AL+ L G + E G K+LLQE AQ+ +P Y K +
Sbjct: 63 AAKAALMSLLSNG---------VEEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPT 113
Query: 133 FSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
F VEI + G AKTKK+AE+ AA+ A A+Q
Sbjct: 114 FVSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTALQ 149
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 46/156 (29%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS LQ YA+ P Y +EGPSH P F++T DD
Sbjct: 161 YKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKAT---DD-------------------- 197
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
+G KN LQE AQ+ + ++P+Y+ K A F
Sbjct: 198 -----------------------SGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFS 234
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
VEI ++ G A K+KKEAE+K+AR A + A
Sbjct: 235 YVEIEGEKFYGKAGKSKKEAELKSARAAYTVLMERA 270
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K++LQE K P Y +K+GP H P F+++V V+ + + S + K A AA+
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 77 VALVEL 82
+A +
Sbjct: 63 MAFLHF 68
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 7 FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN 66
F + +K+ LQE AQ+ + PVY+ IK G H P F S V ++ ++ G +
Sbjct: 192 FKATDDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAG-KS 250
Query: 67 RKAAEQSAAEVALVEL 82
+K AE +A A L
Sbjct: 251 KKEAELKSARAAYTVL 266
>gi|108863923|gb|ABG22336.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
Length = 369
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 138 EIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSRKRGPEVA 197
+IG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P ++ G EV
Sbjct: 50 KIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPGKRVGKEVE 106
Query: 198 NNPEET 203
P ET
Sbjct: 107 KMPIET 112
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS-----LPGFFNRKA 69
+FKSRL E + P Y EGP+H P FR+TV+V+ + S P K
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPT--TAKE 58
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
A+ AA+ A L+ L K+ LQ YAQK IP Y +
Sbjct: 59 AQSLAAKAAFEHLSSLPPPPPPPQPGTQVD--YKSQLQIYAQKRRKDIPFYHSIRSGPPH 116
Query: 130 KVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
F TV I G T KEAE AAR AL+++ A
Sbjct: 117 ATLFKTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLPQEA 159
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK P Y +I+ GP H F++TV +D ++S + K AE +AA
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
VAL+ L + + + + +T Q+ A+K + +Y D+++ FS
Sbjct: 149 RVALMSLPQEANPPQQL---LVQTISHNRARQDLAEKEGSPLDVYNATLDDSN---HFSI 202
Query: 136 T---VEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+ VE + G TKK++E+ A A
Sbjct: 203 SKEKVETQGRSFQAGPGHTKKQSEMIATELAF 234
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 21 QEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALV 80
Q A+K + PV+ EGP H+ +++ V++D ++S F K AEQ+AA+
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF--- 169
Query: 81 ELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIG 140
+ K C S K+LLQE +++ ++ P Y+ + F TVE+
Sbjct: 170 -VGMFQKDEPCPS---------KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVE 219
Query: 141 DIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
I + G A+K+K +AE AA+ A + ++ S
Sbjct: 220 GIGFHGKASKSKNKAEEDAAKIAYITLKECGS 251
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFF-----NRKAAE 71
KS LQE +++ G P Y+T + GP H P F STV V+ + GF ++ AE
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGI------GFHGKASKSKNKAE 235
Query: 72 QSAAEVALVELAKLG 86
+ AA++A + L + G
Sbjct: 236 EDAAKIAYITLKECG 250
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KSRLQE QK + +YE +EGP+H P F +TVIV+ R+ S R E+S
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSS------RDEGEKSL 54
Query: 75 AEVALVELAKLGKVNECISQPIH------------ETGL-CKNLLQEYAQKMNYAIPLYQ 121
E L + + I P ET L K+ LQ YAQK +P Y+
Sbjct: 55 KEA--YNLTAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYR 112
Query: 122 CRKDEASGKVQFSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ + G F V I G T KEAE AA+ AL+++
Sbjct: 113 LIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSL 159
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE + P Y T K G H P F +TVIV+ + S + K A+ +A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
A++A + + P + L KNLLQ YAQK +P+Y C + F
Sbjct: 61 AKLAFDHFSSVSL------PPDVQQHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFK 114
Query: 135 CTVEIGDIRY 144
C V I Y
Sbjct: 115 CKVTIDGKSY 124
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGF 64
+++K+ LQ YAQK G+P P+Y ++GP H F+ V +D Y+ L F
Sbjct: 80 HLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFF 130
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 26/179 (14%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
FK++LQEY Q+ I P YE I + +++ +S VIV+ R++S+ + +K +E AA
Sbjct: 50 FKNKLQEYCQQKKIAIPKYELIPDPANNDK--KSAVIVNGERFESVGAYPKKKESEMDAA 107
Query: 76 EVAL--VELAKLGKVNECIS-QPIHETGLCKNL----------------LQEYAQKMNYA 116
VAL ++ A+ K + + QP+ T + KN L E Q+ +
Sbjct: 108 CVALKALQTAEAQKAPKYAAEQPVAITAVAKNCKPEKEKESTEENMIGQLNEVCQRNSVP 167
Query: 117 IPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL--LAIQSSASE 173
P Y R D++ +FSC V+ + + + KK AE A+ AL L I+ +SE
Sbjct: 168 APQYNERGDKSG---EFSCDVKFKMVVVLNENFENKKCAEKAVAKAALTKLGIEKESSE 223
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+ G+ KNLLQE A+K Y +P+Y K S F TVEI ++G AKTKK A
Sbjct: 233 FDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 292
Query: 156 EIKAARTALLAIQSSASELSGNS 178
E+ AA+ A ++ S L+ S
Sbjct: 293 EMNAAKAAYTHLKERRSNLNHKS 315
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 5 EGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGF 64
+ + G + V+K+ LQE A+K G PVY T K G SH P F STV ++ +
Sbjct: 228 KAWGGFDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKA- 286
Query: 65 FNRKAAEQSAAEVALVEL 82
+K AE +AA+ A L
Sbjct: 287 KTKKLAEMNAAKAAYTHL 304
>gi|410955477|ref|XP_003984379.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Felis catus]
Length = 542
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 118/281 (41%), Gaps = 22/281 (7%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L Y QK + E K GP H F+ VI+D+ Y G ++K A +A
Sbjct: 9 FFIEELNVYCQKHNMVLKYQELSKTGPPHNLRFKYQVIIDEREYPEAEG-KSKKEARNAA 67
Query: 75 AEVALVELAKLGKVNECISQP---------IHETGLCKNLLQEYAQKMNYAIPLYQCRKD 125
A++A+ L K K +S P + TG + AQK ++ QC
Sbjct: 68 AKLAIEILNKENKAVSSVSLPTTHSSEGLGLGSTGNFIGRINRLAQKEQLSVNYEQCELK 127
Query: 126 EASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLT 185
E G +F +IG Y G TK+EA+ AA+ A I S + + +S L
Sbjct: 128 EP-GPERFHYRCKIGQKEYGIGVGSTKQEAKQSAAKLAYEQILSEKTSMKADSVLAGSLI 186
Query: 186 VLPSRKRGPEVANNPEETVNVPKAKKGRFKKKILKMKRPGGRMDRTQLQNTGN-MENINA 244
P G +N ++++ P++ + L+ GG DR ++ N+ + M+N+
Sbjct: 187 TSP----GDSGSNTLVKSISAPESPS---ENDFLE-NSSGGSCDRGRVNNSSSPMDNVRN 238
Query: 245 SQEGSKVSQANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPI 285
S++ K S A T +VE + +EIEPI
Sbjct: 239 SEKKVKRSLAPTFNSPVTKDSRCSVE--LRFTSDFTEIEPI 277
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+ ETG+ KNLLQE AQ++ +P Y + F+CTVE+ I + G AK KK+A
Sbjct: 74 LDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQA 133
Query: 156 EIKAARTALLAIQ 168
E AA A +++
Sbjct: 134 EKNAASAAWSSLR 146
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
V+K+ LQE AQ+ G P P Y T + G H P F TV + + + P N+K AE++A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPA-KNKKQAEKNA 137
Query: 75 AEVALVELAKL 85
A A L +L
Sbjct: 138 ASAAWSSLRQL 148
>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
Length = 880
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
G N FK+ LQE+AQK GIP P Y + K + STV++ D ++ S ++K
Sbjct: 577 GDDNFISFKNSLQEFAQKKGIPVPRYFSKKA----QIGMMSTVVISDHKFHSTGLHKDKK 632
Query: 69 AAEQSAAEVALVELAKL-----------------GKVNECISQPIHETGL-----CKNLL 106
+EQ+AA AL +L + + E +++ + L K+ L
Sbjct: 633 QSEQNAAWFALKKLGIIPVETIFTPLRVAAKRPASTLPETVAKKLKGEDLPKAPSYKSQL 692
Query: 107 QEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALL 165
E+ QK + AIP Y+ ++ EA G V CT+ Y K KK AE A+ L
Sbjct: 693 NEFCQKFHLAIPQYRTQR-EARGYV---CTMLYNKKVYHSTVPLKNKKAAEQNVAQYVLS 748
Query: 166 AIQSS--ASELSGNSA 179
+ + +++SG A
Sbjct: 749 TVNQAPPPTDVSGMEA 764
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 44/189 (23%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+L E+ QK + P Y T +E + T++ + Y S N+KAAEQ+ A
Sbjct: 688 YKSQLNEFCQKFHLAIPQYRTQREARG----YVCTMLYNKKVYHSTVPLKNKKAAEQNVA 743
Query: 76 EVALVELAK------------LGKVNECISQ-----------------PIH--------E 98
+ L + + L KV +Q PI E
Sbjct: 744 QYVLSTVNQAPPPTDVSGMEALQKVVNVTAQKEPDGTTTAVATTSTAIPIGSAEELLEVE 803
Query: 99 TGLC---KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
G KN LQEY K P+Y +K E +F C + + + +TKK +
Sbjct: 804 GGPVISYKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKGCQTKKGS 863
Query: 156 EIKAARTAL 164
E AAR AL
Sbjct: 864 EQSAARIAL 872
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 21 QEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALV 80
Q A+K + PV+ EGP H+ +++ V++D ++S F K AEQ+AA+
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF--- 169
Query: 81 ELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIG 140
+ K C S K+LLQE +++ ++ P Y+ T +I
Sbjct: 170 -VGMFQKDEPCPS---------KSLLQELSEREGFSKPTYK--------------TTQIE 205
Query: 141 DIRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173
I + G A+K+K +AE AA+ A + ++ S
Sbjct: 206 GIGFHGKASKSKNKAEEDAAKIAYITLKECGSH 238
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 81/199 (40%), Gaps = 51/199 (25%)
Query: 13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
C FKS+L E AQK + TP Y+TI + STV+ + + + +K AEQ
Sbjct: 242 CSSFKSKLNELAQKRHLGTPTYQTIYSAGG----YLSTVVFNGREFKGMSPCMKKKDAEQ 297
Query: 73 SAAEVALV----ELAKLGKVNECI---------SQPI----------------------- 96
+AA VA +L+ L V SQP+
Sbjct: 298 NAAFVAYNVLSNDLSSLPPVKAPAVKKPPPVKNSQPMISFISQNQDQKTNNTEKKKSMVN 357
Query: 97 --------HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGA 148
+ KN LQEY Q++ A+P Y+ + +V TV + + Y G A
Sbjct: 358 QQNHSNNASLSLSSKNRLQEYCQRLKKALPQYKTALNSDKTRV---STVIVEGVHYQGEA 414
Query: 149 AKTKKEAEIKAARTALLAI 167
KKEAE+ AA AL A+
Sbjct: 415 KVFKKEAELSAASIALKAL 433
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 84/207 (40%), Gaps = 44/207 (21%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSH---EPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
+K+ LQEY QK+ +PTP Y+ + GP F +T++ V Y + K AE
Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVLSGPGMYIGNVTFNNTLVHGTVAYRII------KEAEN 197
Query: 73 SAAEVALVELAKLGKVNECISQPIH-----------------ETGLC---KNLLQEYAQK 112
+AA AL +L L + I PI + LC K+ L E AQK
Sbjct: 198 NAAFEALKQLGYLHE--NSIYIPIAGVKRSNDTQDPWYSKKPKPALCSSFKSKLNELAQK 255
Query: 113 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGA-AKTKKEAEIKAARTALLAIQSSA 171
+ P YQ A G + TV + G + KK+AE AA A + +
Sbjct: 256 RHLGTPTYQTIY-SAGG---YLSTVVFNGREFKGMSPCMKKKDAEQNAAFVAYNVLSNDL 311
Query: 172 SELSGNSAGNTQLTVLPSRKRGPEVAN 198
S L A P+ K+ P V N
Sbjct: 312 SSLPPVKA--------PAVKKPPPVKN 330
>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 236
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+ LQEY Q+ G YE +KE GPSH+ F +IVD +Y + G +KAAEQ A
Sbjct: 164 FKTELQEYLQQNGPVHIRYELVKEEGPSHDKTFTVQLIVDGKKYKTASG-KTKKAAEQMA 222
Query: 75 AEVALVELAK 84
A++ + EL K
Sbjct: 223 AKLTMEELTK 232
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%)
Query: 7 FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFN 66
F S Y K +LQE QK P P Y+T EGP H P F STV V + + S
Sbjct: 23 FHVFSVAYERKQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPAST 82
Query: 67 RKAAEQSAAEVAL 79
KA+++ AA VA
Sbjct: 83 LKASQEFAAMVAF 95
>gi|429765782|ref|ZP_19298062.1| ribonuclease III [Clostridium celatum DSM 1785]
gi|429185635|gb|EKY26609.1| ribonuclease III [Clostridium celatum DSM 1785]
Length = 232
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+RLQEY QK G + VYE IK EGP H F + +I+D+ + G +++K +EQ+A
Sbjct: 161 YKTRLQEYLQKNGEISIVYELIKFEGPPHRRKFYTKLIIDNKEFTCGEG-YSKKESEQNA 219
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 220 AKAALKSLEEI 230
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 41/163 (25%)
Query: 4 NEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPG 63
+E F G+ ++FK++LQ YAQK PVY + GP H F+ ++ Y+S
Sbjct: 167 DESFEGM--LHLFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREY 224
Query: 64 FFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCR 123
F L+K K C P Y
Sbjct: 225 F---------------PTLSKAEKREGC------------------------GFPTYCTE 245
Query: 124 KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA 166
K + F TVEI + + G A+TKK+AE+ AA+ A A
Sbjct: 246 KSGEAHAPTFISTVEIDGVSFTGKEARTKKQAEMSAAKIAYTA 288
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS LQ + G P Y+ K+G H P F +TV V+ + S + K A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 75 AEVALVELA 83
A++A +
Sbjct: 61 AKLAYDHFS 69
>gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797]
gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797]
Length = 247
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
Y +KS LQ+Y+QK TP+YE + E GP H +F+ T I+ + +Y+ G +K AEQ
Sbjct: 164 YNYKSLLQQYSQKKFSQTPIYEVLDEKGPDHSKFFKVTAIIGEHKYEPAWG-STKKEAEQ 222
Query: 73 SAAEVALVE 81
AA AL E
Sbjct: 223 RAAYNALRE 231
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQF-SCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQ+Y+QK P+Y+ ++ +F T IG+ +Y TKKEAE +AA
Sbjct: 167 KSLLQQYSQKKFSQTPIYEVLDEKGPDHSKFFKVTAIIGEHKYEPAWGSTKKEAEQRAAY 226
Query: 162 TAL 164
AL
Sbjct: 227 NAL 229
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
KNLLQE AQK Y +P Y S K F+ TVE+ + G +TKK+AE AA+
Sbjct: 8 KNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQAEFNAAKV 67
Query: 163 ALLAIQ 168
A A++
Sbjct: 68 AYKALK 73
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR--KAAE 71
+ +K+ LQE AQK G P Y T+ G SH+P F STV +V+ + G R K AE
Sbjct: 5 FAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTV---EVKGEFFTGQQTRTKKQAE 61
Query: 72 QSAAEVALVEL 82
+AA+VA L
Sbjct: 62 FNAAKVAYKAL 72
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 217 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 275
Query: 76 EVALVEL 82
AL EL
Sbjct: 276 ANALAEL 282
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
+P F V+ V+KS+LQ++ Q+ G P Y++I EG H FRS V + + +
Sbjct: 31 IPLITSFLFVTK--VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITING 88
Query: 61 LPGFFNRKAAEQSAAEVAL 79
+ RK AEQ A++AL
Sbjct: 89 QGTYARRKDAEQEIAKIAL 107
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 218 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 276
Query: 76 EVALVEL 82
AL EL
Sbjct: 277 ANALAEL 283
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 218 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 276
Query: 76 EVALVEL 82
AL EL
Sbjct: 277 ANALAEL 283
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 245
Query: 76 EVALVEL 82
AL EL
Sbjct: 246 ANALAEL 252
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 218 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 276
Query: 76 EVALVEL 82
AL EL
Sbjct: 277 ANALAEL 283
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 245
Query: 76 EVALVEL 82
AL EL
Sbjct: 246 ANALAEL 252
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
FK++L YAQK G P+Y+ I+EGP+H P F + V +D + + + ++AA
Sbjct: 81 FKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 140
Query: 76 EVALVELAKLGKVNECISQPIHETGL----CKNLLQEYAQKMNYAIPLYQCRKDEASGKV 131
++L P E+ + KN +QE AQK +P+Y
Sbjct: 141 AEVALDLLP--------PIPPQESTIPSLSYKNFIQEIAQKEGILLPVYNTVPTNKEYST 192
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
+ +V+I + G +KK+AE+ AA+ A + + EL G+
Sbjct: 193 AYKSSVQIKCEIFEGEPRTSKKQAEMNAAKIAYHHL--ALLELDGD 236
>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
Length = 263
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQ+YAQK TP Y+ +KE GP H +F+ + + +V Y + G N+K AEQ A
Sbjct: 162 YKSVLQQYAQKTLGETPRYDLLKEYGPDHLKYFKVSAALGEVVYAAAWG-INKKEAEQKA 220
Query: 75 AEVALVEL 82
A AL EL
Sbjct: 221 AANALSEL 228
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K++LQ+YAQK P Y K+ ++ F + +G++ Y KKEAE KAA
Sbjct: 163 KSVLQQYAQKTLGETPRYDLLKEYGPDHLKYFKVSAALGEVVYAAAWGINKKEAEQKAAA 222
Query: 162 TALLAIQSSASELSGNSA 179
AL SEL G A
Sbjct: 223 NAL-------SELEGKPA 233
>gi|114326369|ref|NP_001041600.1| interferon-induced, double-stranded RNA-activated protein kinase
[Canis lupus familiaris]
gi|62002572|gb|AAX58777.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Canis
lupus familiaris]
Length = 532
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L + QK E KEGP+H F I+D+ Y G ++K A +A
Sbjct: 9 FFIEELNIFCQKHRKVLKYNELSKEGPAHNLRFTFQAIIDEREYPEAEGK-SKKEARNTA 67
Query: 75 AEVALVELAKLGKVNECISQPIHET--GLCKNLLQEYAQKMNYAIPL------YQCRKDE 126
A++AL L K K +S P +T GL + Y +MN Y+ + +
Sbjct: 68 AKLALEILHKENKAVSSLSLPTTDTSEGLGLEGVGNYIGRMNRLAQKEQLSVNYEQWELK 127
Query: 127 ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNT 182
G +F C +IG Y G TK+EA+ AA+ A IQS + ++ +S T
Sbjct: 128 DCGPERFHCRCKIGQKEYDIGKGATKQEAKHLAAKFAYEQIQSEQTLMNADSGSWT 183
>gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5]
gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5]
Length = 271
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V SLPG +++
Sbjct: 197 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------SLPGLEPAEGVGGSKR 248
Query: 69 AAEQSAAEVAL 79
AAE+ AA V L
Sbjct: 249 AAEKVAASVML 259
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
FK++L YAQK P+Y+ I+EGP+H P F + V +D + + + ++AA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 76 EVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSC 135
++L E + KN +QE AQK ++P+Y +
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLS----YKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKS 151
Query: 136 TVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
+V+I + G +KK+AE+ AA+ A + + EL G+
Sbjct: 152 SVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHL--ALPELEGD 191
>gi|397904679|ref|ZP_10505580.1| Ribonuclease III [Caloramator australicus RC3]
gi|397162275|emb|CCJ32914.1| Ribonuclease III [Caloramator australicus RC3]
Length = 238
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKSRLQEY Q+ + T YE + GP H+ F V +D+++Y G ++K AEQ A
Sbjct: 166 FKSRLQEYVQRNLLSTIKYEVANQWGPDHDKTFEIEVYLDNIKYGLGVG-KSKKEAEQMA 224
Query: 75 AEVALVEL 82
A+ AL++L
Sbjct: 225 AKNALIKL 232
>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
Length = 271
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V SLPG +++
Sbjct: 197 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------SLPGLDPAEGVGGSKR 248
Query: 69 AAEQSAAEVAL 79
AAE+ AA V L
Sbjct: 249 AAEKVAASVML 259
>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
Length = 241
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ +QE + G P P Y+ +GP H F STV+++D RY S G ++K AEQ AA
Sbjct: 166 WKTAIQELCAQLGYPQPTYDFTSQGPDHARVFTSTVVIEDRRYGSGEG-TSKKLAEQQAA 224
Query: 76 E 76
Sbjct: 225 H 225
>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KSRLQE Q G TP Y+ I E GP+H P F + V VD ++ G ++KAAE AA
Sbjct: 162 KSRLQEAVQAQGKATPEYKLIGESGPAHTPTFTAVVFVDGLKVGRGQG-PSKKAAESEAA 220
Query: 76 EVALVEL 82
+ ALV L
Sbjct: 221 QDALVRL 227
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++ ++LQE QK P P Y+T EGP H P F STV V + + S KA+++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 75 AEVAL 79
A VA
Sbjct: 61 AMVAF 65
>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
Length = 272
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 198 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 249
Query: 69 AAEQSAAEVAL 79
AAE+ AA V L
Sbjct: 250 AAEKVAASVML 260
>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
gi|81562548|sp|Q6N6C1.1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
Length = 272
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR VI LPG +++
Sbjct: 198 KTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVI--------LPGLEPAEGLGGSKR 249
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 250 AAEKVAASAML 260
>gi|384218340|ref|YP_005609506.1| RNase III [Bradyrhizobium japonicum USDA 6]
gi|354957239|dbj|BAL09918.1| RNase III [Bradyrhizobium japonicum USDA 6]
Length = 295
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 222 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 273
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 274 AAEKVAASV-MIEREGVGGGND 294
>gi|374575961|ref|ZP_09649057.1| ribonuclease III [Bradyrhizobium sp. WSM471]
gi|374424282|gb|EHR03815.1| ribonuclease III [Bradyrhizobium sp. WSM471]
Length = 283
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 261
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 262 AAEKVAASV-MIEREGVGGGND 282
>gi|386402441|ref|ZP_10087219.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
gi|385743067|gb|EIG63263.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
Length = 283
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 261
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 262 AAEKVAASV-MIEREGVGGGND 282
>gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
Length = 183
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 112 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 169
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 170 AELMLEKIGK 179
>gi|398821092|ref|ZP_10579580.1| ribonuclease III [Bradyrhizobium sp. YR681]
gi|398228233|gb|EJN14367.1| ribonuclease III [Bradyrhizobium sp. YR681]
Length = 271
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------DLPGLAPAEGIGGSKR 249
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 250 AAEKVAASV-MIEREGVGGSND 270
>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
Length = 273
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 251
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 252 AAEKVAASV-MIEREGVGGGND 272
>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
Length = 368
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 294 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLESAEGVGGSKR 345
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 346 AAEKVAASVMI 356
>gi|30179749|sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 250
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 177 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 228
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 229 AAEKVAASV-MIEREGVGGGND 249
>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 234
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 163 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 220
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 221 AELMLEKIGK 230
>gi|383771402|ref|YP_005450467.1| RNase III [Bradyrhizobium sp. S23321]
gi|381359525|dbj|BAL76355.1| RNase III [Bradyrhizobium sp. S23321]
Length = 273
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------DLPGLAPAEGIGGSKR 251
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 252 AAEKVAASV-MIEREGVGGGND 272
>gi|42521037|ref|NP_966952.1| ribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|81652137|sp|Q73FT3.1|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807910|sp|C0R4Q8.1|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
Length = 232
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELMLEKIGK 228
>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
Length = 272
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V+ LPG +++
Sbjct: 198 KTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVV--------LPGLEPAEGVGGSKR 249
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 250 AAEKVAASAML 260
>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
Length = 231
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 158 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------DLPGLAPAEGIGGSKR 209
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 210 AAEKVAASV-MIEREGVGGGND 230
>gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa]
gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa]
Length = 537
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SG S C+ + L +Y QK + E K GP+H F V++D+ + G ++
Sbjct: 3 SGRSPCF-YIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEG-RSK 60
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIH---ETGLCKNL---LQEYAQKMNYAIPLYQ 121
K A+ +A ++A + K K N S P + L +N + +QK N ++
Sbjct: 61 KEAKNAAVKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEP 120
Query: 122 CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
C E G +F +IG Y G TK+EA+ AA+ A +QS
Sbjct: 121 CEPGE-DGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQS 167
>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|374331952|ref|YP_005082136.1| ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|359344740|gb|AEV38114.1| Ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
Length = 235
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G PTP YETI + GP H P F+ V V+ V G +++ AEQSAA
Sbjct: 165 KTTLQEWAQSKGRPTPQYETISRSGPDHAPIFKIRVNVEGVDPGEAVG-SSKRIAEQSAA 223
Query: 76 E 76
E
Sbjct: 224 E 224
>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
Length = 228
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G+P P YET+ +EGP H P FR V++
Sbjct: 159 KTALQEWAQARGLPPPRYETLGREGPDHAPQFRIAVVL 196
>gi|367475465|ref|ZP_09474924.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
gi|365272181|emb|CCD87392.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
Length = 367
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 293 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLEPAEGVGGSKR 344
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 345 AAEKVAASVMI 355
>gi|146341377|ref|YP_001206425.1| ribonuclease III [Bradyrhizobium sp. ORS 278]
gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278]
Length = 357
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 283 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLEPAEGVGGSKR 334
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 335 AAEKVAASVMI 345
>gi|365889050|ref|ZP_09427771.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
gi|365335227|emb|CCE00302.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
Length = 373
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 299 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLEPAEGVGGSKR 350
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 351 AAEKVAASVMI 361
>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
gi|58535076|gb|EAL59164.1| ribonuclease III, partial [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 232
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELMLEKIEK 228
>gi|456354830|dbj|BAM89275.1| ribonuclease III [Agromonas oligotrophica S58]
Length = 358
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLEPAEGVGGSKR 335
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 336 AAEKVAASVMI 346
>gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1]
Length = 251
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KSRLQ + Q IP P YE + GPSH P FR + V+ V + + RK AE AA
Sbjct: 180 KSRLQTWLQARRIPLPTYELVSVTGPSHAPSFRVRLRVNGVEHTACGS--TRKGAESDAA 237
Query: 76 EVALVELAKL 85
E L +L L
Sbjct: 238 ERVLEDLMSL 247
>gi|373451001|ref|ZP_09542940.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
gi|371931808|emb|CCE77958.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
Length = 233
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ Q+ +P P YE +K+ GP+H P F +V ++ YD + ++K AEQ A
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIES--YDKVSACAPSKKIAEQKA 221
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 222 AELILEKIKK 231
>gi|365898360|ref|ZP_09436321.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
gi|365420885|emb|CCE08863.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
Length = 284
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLESAEGVGGSKR 261
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 262 AAEKVAASVMI 272
>gi|354594333|ref|ZP_09012372.1| ribonuclease 3 [Commensalibacter intestini A911]
gi|353672009|gb|EHD13709.1| ribonuclease 3 [Commensalibacter intestini A911]
Length = 245
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ G+P PVYE + +EGPSH P F V+ + Y+ N++AAE +AA
Sbjct: 174 KTALQEWVLARGLPLPVYELVSQEGPSHTPIFVIKVVAKN--YEGRGEGRNKRAAESAAA 231
Query: 76 EVALVEL 82
+ L++L
Sbjct: 232 KDLLIKL 238
>gi|406982720|gb|EKE04003.1| hypothetical protein ACD_20C00120G0004 [uncultured bacterium]
Length = 241
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
Y FK+ LQEY Q + PVY+ +K EGP H F V+++D G ++K A+Q
Sbjct: 165 YNFKAMLQEYTQANELELPVYDVVKEEGPPHNKVFEVAVVINDKTLGIGSG-KSKKEAQQ 223
Query: 73 SAAEVALVELAKL 85
+AE A+++L L
Sbjct: 224 KSAEQAVIKLGLL 236
>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 233
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ Q+ +P P YE +K+ GP+H P F +V ++ YD + ++K AEQ A
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIES--YDKVSACAPSKKIAEQKA 221
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 222 AELILEKIKK 231
>gi|365883075|ref|ZP_09422255.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
gi|365288507|emb|CCD94786.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
Length = 358
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLEPAEGVGGSKR 335
Query: 69 AAEQSAAEVAL 79
AAE+ AA V +
Sbjct: 336 AAEKVAASVMI 346
>gi|373452513|ref|ZP_09544426.1| ribonuclease III [Eubacterium sp. 3_1_31]
gi|371966382|gb|EHO83872.1| ribonuclease III [Eubacterium sp. 3_1_31]
Length = 227
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YETI GPS++P F V++DD+ G F++K AEQ A
Sbjct: 159 YKTKLQEYIQSDSRKTVHYETIHVSGPSNKPEFEVAVMLDDITLGRGKG-FSKKRAEQMA 217
Query: 75 AEVALVELAK 84
A+ A ++ K
Sbjct: 218 AKDAFEKMVK 227
>gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 227
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YETI GPS++P F V++DD+ G F++K AEQ A
Sbjct: 159 YKTKLQEYIQSDSRKTVHYETIHVSGPSNKPEFEVAVMLDDITLGRGKG-FSKKRAEQMA 217
Query: 75 AEVALVELAK 84
A+ A ++ K
Sbjct: 218 AKDAFEKMVK 227
>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
gi|373121991|ref|ZP_09535858.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|422329410|ref|ZP_16410435.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
gi|371657022|gb|EHO22336.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371664970|gb|EHO30139.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 227
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YET+ GPS++P F V++DD+ G F++K AEQ A
Sbjct: 159 YKTKLQEYIQSDSRKTVHYETVNVSGPSNKPEFEVIVMLDDINLGRGKG-FSKKRAEQMA 217
Query: 75 AEVALVELAK 84
A+ A ++ K
Sbjct: 218 AKDAFEKMVK 227
>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|238056573|sp|B3CMS0.1|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 230
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ Q+ +P P YE +K+ GP+H P F +V ++ YD + ++K AEQ A
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIES--YDKVSACAPSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELILEKIKK 228
>gi|346313800|ref|ZP_08855327.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345907655|gb|EGX77365.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 227
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YET+ GPS++P F V++DD+ G F++K AEQ A
Sbjct: 159 YKTKLQEYIQSDSRKTVHYETVNVSGPSNKPEFEVIVMLDDINLGRGKG-FSKKRAEQMA 217
Query: 75 AEVALVELAK 84
A+ A ++ K
Sbjct: 218 AKDAFEKMVK 227
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQEY QK + P Y+ H F V V +Y+SL N+K AE+ AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSL-WMDNKKDAEKHAAT 66
Query: 77 VALVELAKLG 86
VALVEL+K G
Sbjct: 67 VALVELSKGG 76
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
KN LQEY QK +P Y +F C V++ +Y KK+AE AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATV 67
Query: 163 ALLAIQSSASELSGNSAGNTQLTVLPSRKRGP 194
AL+ ELS G+ +L P R P
Sbjct: 68 ALV-------ELS--KGGHKRLMAPPPRNLSP 90
>gi|409993666|ref|ZP_11276799.1| ribonuclease III [Arthrospira platensis str. Paraca]
gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39]
gi|409935446|gb|EKN76977.1| ribonuclease III [Arthrospira platensis str. Paraca]
Length = 395
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 17 KSRLQEYAQK-AGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
K+RLQE+ QK G TP YETIKE G H+ F V+V+ Y G ++K A + A
Sbjct: 324 KNRLQEWVQKNIGPITPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGL-SKKEASKKA 382
Query: 75 AEVALVELAKLG 86
AE AL ++ KLG
Sbjct: 383 AEKALDQIYKLG 394
>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 227
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YET+ GPS++P F V++DD+ G F++K AEQ A
Sbjct: 159 YKTKLQEYIQSDSRKTVHYETVNVSGPSNKPEFEVIVMLDDINLGRGKG-FSKKRAEQMA 217
Query: 75 AEVALVELAK 84
A+ A ++ K
Sbjct: 218 AKDAFEKMVK 227
>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
Length = 145
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V +D G N+K AEQ AA
Sbjct: 75 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG-HNKKLAEQKAA 133
Query: 76 EVAL 79
+ L
Sbjct: 134 SLML 137
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 47.0 bits (110), Expect = 0.019, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQEY Q+A P+Y T +G H+ F+STV+VD + S K AEQ AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 76 EVA 78
+VA
Sbjct: 99 KVA 101
>gi|354491534|ref|XP_003507910.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Cricetulus griseus]
Length = 452
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y QK + + GP H+ F VI++ + G ++ A+ +A
Sbjct: 8 FYMDKLNKYHQKHKVMITYKQLHITGPPHDRRFTFQVIINGEEFPEAEGR-TKQEAKNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN----LLQEYAQKMNYAIPLYQCRKDEASGK 130
A++A+ L + N+ SQ GL L+ YAQK N ++ QC + S +
Sbjct: 67 AQLAVERLNE----NKADSQTDASEGLLSGNYIGLVNSYAQKENLSVNYEQCTSNTQSPQ 122
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
+F C +IG Y G+ TK+EA+ AA+ A + +S
Sbjct: 123 -RFCCKCKIGLKTYGIGSGATKQEAKQSAAKDAYQKLSEKSS 163
>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
Length = 171
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V +D G N+K AEQ AA
Sbjct: 101 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG-HNKKLAEQKAA 159
Query: 76 EVAL 79
+ L
Sbjct: 160 SLML 163
>gi|2500552|sp|Q52698.1|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
Length = 228
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G+P P YET+ ++GP H P FR V++
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVL 196
>gi|405964214|gb|EKC29721.1| Double-stranded RNA-specific adenosine deaminase [Crassostrea
gigas]
Length = 669
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEV 77
S L E+AQ G+ + + K GPSH P FR +DD ++ + N K + AA +
Sbjct: 112 SALMEHAQSLGLTATIKQVSKTGPSHCPTFRMYAKLDDRKFRMIE-HGNTKDGRKKAANI 170
Query: 78 ALVELAKLGKV 88
AL++L + GK+
Sbjct: 171 ALLQLQREGKI 181
>gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase
[Mus musculus]
gi|2507204|sp|Q03963.2|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated
protein kinase; AltName: Full=Eukaryotic translation
initiation factor 2-alpha kinase 2; Short=eIF-2A protein
kinase 2; AltName: Full=Interferon-inducible
RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
protein kinase; AltName: Full=Protein kinase
RNA-activated; Short=PKR; AltName:
Full=Serine/threonine-protein kinase TIK; AltName:
Full=Tyrosine-protein kinase EIF2AK2; AltName: Full=p68
kinase
gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus]
gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus]
Length = 515
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y Q G+ E GP H+ F V++D+ + G +++ A +A
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGR-SKQEARNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN---LLQEYAQKMNYAIPLYQCRKDEASGKV 131
A++A+ L KV +C + + N L+ +AQK ++ QC + +
Sbjct: 67 AKLAVDILDNENKV-DCHTSASEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQ- 124
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+F C +IG Y G+ TK+EA+ AA+ A + S + +G
Sbjct: 125 RFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|201068|gb|AAA40150.1| serine/threonine-specific protein kinase [Mus musculus]
Length = 518
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y Q G+ E GP H+ F V++D+ + G ++ A +A
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFGEAKGR-SKTEARNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN---LLQEYAQKMNYAIPLYQCRKDEASGKV 131
A++A+ L KV +C + + N L+ +AQK ++ QC + +
Sbjct: 67 AKLAVDILDNENKV-DCHTSACEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQ- 124
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+F C +IG Y G+ TK+EA+ AA+ A + S + +G
Sbjct: 125 RFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE AG+ P Y EGP H+ F +TV+VD + G N+K+AE AA
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTG-RNKKSAEMIAA 234
Query: 76 EVALVEL 82
E A V L
Sbjct: 235 ENAWVSL 241
>gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11]
gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11]
Length = 235
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ +PTP YE +EGP H P F +VIV ++ G +++ AEQ AA
Sbjct: 165 KTTLQEWAQSKSLPTPHYEVASREGPDHAPSFTVSVIVQGLKNGEGKG-GSKRIAEQHAA 223
Query: 76 EVAL 79
E L
Sbjct: 224 EAVL 227
>gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b]
gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b]
Length = 233
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIVDDVRYDSLP---GFFNRKAAEQ 72
K+ LQE+AQ +PTP Y T + GP H P+F+ V+V+ +P G +++ AEQ
Sbjct: 161 KTSLQEWAQARRLPTPCYRMTSRSGPDHAPFFKVEVVVEGF----VPAEGGGASKRVAEQ 216
Query: 73 SAAEVAL 79
SAA+ L
Sbjct: 217 SAAQAFL 223
>gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645]
gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645]
Length = 243
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQ+YAQ+ TP Y + E GP H F+ V +RY + G N+K AEQ A
Sbjct: 167 FKSALQQYAQREHGATPNYLLLDEKGPDHSKCFQVAAQVAGIRYVAAWG-RNKKEAEQRA 225
Query: 75 AEVALVEL 82
A+ AL E+
Sbjct: 226 AQNALCEI 233
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+ LQ+YAQ+ + A P Y ++ + F ++ IRY+ + KKEAE +AA+
Sbjct: 168 KSALQQYAQREHGATPNYLLLDEKGPDHSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQ 227
Query: 162 TALLAIQSSASE 173
AL I+ +E
Sbjct: 228 NALCEIEGRPAE 239
>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 232
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE+ QK G + YE IK EGP H F + V++++ G +++K AEQ+A
Sbjct: 161 FKTKLQEFLQKDGEVSIHYELIKHEGPPHRRKFFTNVVIENNIMGEGCG-YSKKEAEQNA 219
Query: 75 AEVALVEL 82
A+ AL++L
Sbjct: 220 AKQALMKL 227
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P PVYE ++E GP H F T+ R+ + +RK AEQ+AA
Sbjct: 160 KTRLQEYLQSRDLPLPVYELVEEKGPEHAKIF--TISAKSERFCTTATASSRKKAEQAAA 217
Query: 76 EV 77
E+
Sbjct: 218 EL 219
>gi|353328388|ref|ZP_08970715.1| ribonuclease III [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 232
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F ++ +++ Y + ++K AEQ A
Sbjct: 163 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISIFIEN--YGKVSACASSKKIAEQKA 220
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 221 AELILEKIKK 230
>gi|404370911|ref|ZP_10976226.1| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
gi|404301521|gb|EEH98168.2| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQE QK+G + +YE +K EGP H F ++V+++D G +++K +EQ+A
Sbjct: 161 YKTKLQEEMQKSGEVSIIYELLKYEGPPHRRKFFTSVLIEDRELGKGEG-YSKKESEQNA 219
Query: 75 AEVALVELAKL 85
A+ AL L +L
Sbjct: 220 AKEALRNLEEL 230
>gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium]
Length = 171
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 101 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 159
Query: 76 EVALVEL 82
+ L ++
Sbjct: 160 SLMLAKI 166
>gi|427428070|ref|ZP_18918112.1| Ribonuclease III [Caenispirillum salinarum AK4]
gi|425882771|gb|EKV31450.1| Ribonuclease III [Caenispirillum salinarum AK4]
Length = 229
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P YET++ GP+H+P F V V + + G RK AEQ AA
Sbjct: 161 KTALQEWAQGQGKPLPAYETVETTGPAHDPRFVVAVTVQGIAPATGTGTSKRK-AEQMAA 219
Query: 76 EVAL 79
E L
Sbjct: 220 ETLL 223
>gi|444723303|gb|ELW63961.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Tupaia chinensis]
Length = 458
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 20 LQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVAL 79
L +Y QK G+ E KEGP H+ F VI++ + + G ++ +++ A
Sbjct: 14 LNKYRQKHGVILDYREVHKEGPPHDRRFTFQVIINGRAFSAAEG----RSKKEAKNAAAK 69
Query: 80 VELAKLGKVNE--C-ISQPIHET------GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
+ + L K NE C +S +T G L+ Y QK A+ Y+ + G
Sbjct: 70 IAVEILNKENEPVCSLSLTTTDTSEGSSIGNYIGLVNRYTQKEKLAVN-YEQYESNDHGP 128
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
+F C +IG Y G+ TK+EA+ AA+ A L I S
Sbjct: 129 QRFHCKCKIGQKEYGHGSGSTKQEAKQLAAKCAYLRILS 167
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 47 FRSTVIVDDVRYDSLPGFFNR-KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNL 105
F++TV + ++S P F + + AE +AAEVAL EL+K G + ++ + ETG+ KNL
Sbjct: 58 FKATVNFNGETFES-PAFCSTLRLAEHAAAEVALNELSKRGPSSSLAAKVLDETGIYKNL 116
Query: 106 LQEYAQK 112
LQE A +
Sbjct: 117 LQETAHR 123
>gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium]
gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium]
Length = 171
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 101 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 159
Query: 76 EVALVEL 82
+ L ++
Sbjct: 160 SLMLAKI 166
>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
Length = 241
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P Y I + GP H P F+ TV +DD R S G +++ EQ+AA
Sbjct: 171 KTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAA 230
Query: 76 EVALVELAK 84
L ++ +
Sbjct: 231 TAMLEQIER 239
>gi|414173889|ref|ZP_11428516.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
gi|410890523|gb|EKS38322.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
Length = 268
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------ELPGLTPAEGVGGSKR 246
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 247 AAEKLAATALL 257
>gi|338974857|ref|ZP_08630213.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
gi|338231952|gb|EGP07086.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
Length = 268
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------ELPGLTPAEGVGGSKR 246
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 247 AAEKLAATALL 257
>gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium]
gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium]
Length = 145
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 75 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 133
Query: 76 EVALVEL 82
+ L ++
Sbjct: 134 SLMLAKI 140
>gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel]
gi|75432734|sp|Q5FGH0.1|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel]
Length = 227
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 157 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 215
Query: 76 EVALVEL 82
+ L ++
Sbjct: 216 SLMLAKI 222
>gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
gi|81352757|sp|Q5HA74.1|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
Length = 227
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 157 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 215
Query: 76 EVALVEL 82
+ L ++
Sbjct: 216 SLMLAKI 222
>gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4]
gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4]
Length = 235
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ +PTP YE I ++GP H P F V V + G +++ AEQ+AA
Sbjct: 165 KTTLQEWAQSKSLPTPFYEVISRDGPDHAPIFVVAVAVKGLENGEGKG-GSKRLAEQNAA 223
Query: 76 EVAL 79
E L
Sbjct: 224 EAVL 227
>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 45.4 bits (106), Expect = 0.047, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V +D G N+K AEQ AA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG-HNKKPAEQKAA 125
Query: 76 EVAL 79
+ L
Sbjct: 126 SLML 129
>gi|414167173|ref|ZP_11423402.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
gi|410890990|gb|EKS38788.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
Length = 268
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG +++
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV--------ELPGLTPAEGVGGSKR 246
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 247 AAEKLAATALL 257
>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 45.4 bits (106), Expect = 0.048, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V +D G N+K AEQ AA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG-HNKKLAEQKAA 125
Query: 76 EVAL 79
+ L
Sbjct: 126 SLML 129
>gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus]
gi|117616338|gb|ABK42187.1| Prkr [synthetic construct]
gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus
musculus]
Length = 515
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y Q G+ E GP H+ F V++D+ + G +++ A +A
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGK-SKQEARNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGL----CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
A++A+ L KV +C + E GL L+ +AQK ++ QC + +
Sbjct: 67 AKLAVDILDNENKV-DCHTSA-SEQGLPYGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQ 124
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+F C +IG Y G+ TK+EA+ AA+ A + S + +G
Sbjct: 125 -RFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQS 73
+KS LQE Q+ PVY +K GP H F VIV D+ Y PG N+K AEQ
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYG--PGTGRNKKTAEQE 213
Query: 74 AAEVALVELAK 84
AA++A L K
Sbjct: 214 AAKMAYEALEK 224
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQE Q++ + P+Y+ K + F V + DI Y G + KK AE +AA+
Sbjct: 157 KSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAAK 216
Query: 162 TALLAIQSSASE 173
A A++ ++E
Sbjct: 217 MAYEALEKDSAE 228
>gi|344288852|ref|XP_003416160.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Loxodonta africana]
Length = 540
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 11/192 (5%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SG+S + F L +Y+QK +P E K GP H+ F VI+ D + + G +
Sbjct: 3 SGLSAGF-FMEELNKYSQKHDVPVKYLELSKTGPPHDLRFTFQVIIKDREFPAAEGKTKK 61
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHET------GLCKNLLQEYAQKMNYAIPLYQ 121
A +A + + K K IS +T G L+ +AQK ++ Q
Sbjct: 62 IAKNAAAKIAYEI-INKENKTVSSISLLTADTSEGLSIGNYIGLVNRFAQKTQLSVNYVQ 120
Query: 122 CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGN 181
C E +F T IG Y A TK+EA+ AA+ A I + +SA
Sbjct: 121 CFVSEPR---EFHYTCRIGSKEYGIAAGSTKQEAKQFAAKLAYDEITGEKTSEKADSASF 177
Query: 182 TQLTVLPSRKRG 193
PS G
Sbjct: 178 GSFVTSPSDSSG 189
>gi|410727093|ref|ZP_11365316.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410599428|gb|EKQ53981.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 270
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE IK EGP H F + VI+D G +++K AEQ+A
Sbjct: 199 FKTKLQELLQKDGEVAIQYELIKYEGPPHRRKFYTNVIIDKKLMGEGSG-YSKKEAEQNA 257
Query: 75 AEVAL 79
A+ AL
Sbjct: 258 AKQAL 262
>gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium]
Length = 145
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 75 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRATG-HNKKLAEQKAA 133
Query: 76 EVALVEL 82
+ L ++
Sbjct: 134 SLMLAKI 140
>gi|302800682|ref|XP_002982098.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
gi|300150114|gb|EFJ16766.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
Length = 871
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 42/119 (35%)
Query: 53 VDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQK 112
V+ V+Y+S GF KAAE SAA+ AL L ++ TGLCKN+LQE
Sbjct: 372 VNGVKYESEDGFPTLKAAEHSAAKKALDSLTGGANGTSTVAPGSSMTGLCKNVLQE---- 427
Query: 113 MNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
+K+EAE+KAARTA+LAI+ A
Sbjct: 428 --------------------------------------SKREAEVKAARTAILAIKGLA 448
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 58 YDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAI 117
+++L G + + +A VAL L LGK+N+ + I TG K +LQE+ Q +
Sbjct: 126 FEALIGAIFKDSDYYTAKNVALKLL--LGKINKL--EEIEGTGDYKTVLQEFVQGKYRKM 181
Query: 118 PLYQCR--KDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
P Y+ K KV F +V D Y G K+KKEAE AA+ AL+ +++ +S
Sbjct: 182 PEYKLLNTKGPDHDKV-FEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKLKNKSS 237
>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|386349919|ref|YP_006048167.1| RNAse III [Rhodospirillum rubrum F11]
gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|346718355|gb|AEO48370.1| RNAse III [Rhodospirillum rubrum F11]
Length = 221
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+P P Y ++GP H+P F +V V D +S G +++ AEQ+AA
Sbjct: 155 KTALQEWAQGRGLPLPTYAVEGRDGPPHKPMFTVSVTVKDNGSESALG-ASKRLAEQAAA 213
Query: 76 EVALVELA 83
+ L LA
Sbjct: 214 QRLLDRLA 221
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE+ QK PVYE +K GP H+ F +V + V Y G N+K AEQSA
Sbjct: 185 YKTLLQEFYQKKYKECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASG-KNKKEAEQSA 243
Query: 75 AEVA 78
A +A
Sbjct: 244 ARLA 247
>gi|348507385|ref|XP_003441236.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 497
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
Query: 19 RLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVA 78
+L EYA K E +GP H+ F ++D Y S G +K A+Q+AA+ A
Sbjct: 9 KLNEYAHKWHSGVSYEEVGSDGPPHDKVFNLRAVIDGKAYPSGEG-KTKKEAKQNAAKKA 67
Query: 79 LVELAKLGKVNECISQ-----------------PIHETGLCKNLLQEYAQKMNYAIPLYQ 121
L L++LG + S+ ET L+ Y QK + +
Sbjct: 68 LESLSQLGHQDSVESRNNAAEASVQVVLSSKDTSFTETNFI-GLVNHYCQKTKRSHSYDE 126
Query: 122 CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGN 181
+D S K F ++I + Y G K+ KEA+ AA A A+Q + S ++ N
Sbjct: 127 VGRDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQEQSDWDSKDADNN 186
Query: 182 TQL 184
+
Sbjct: 187 DSI 189
>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
Length = 244
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+AQ G+PTP Y + + GP H P FR V V SL +++ AEQ AA
Sbjct: 167 KSALQEWAQGLGLPTPTYAVVERAGPDHAPIFRIEARVAGV-APSLGVGGSKRLAEQEAA 225
Query: 76 EVAL 79
+ L
Sbjct: 226 RLLL 229
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQE A +P+P YE + GP H+ F +T +V R+++ G +++ AEQSAA+
Sbjct: 141 KTALQELAASLNLPSPEYEISESGPDHDKSFIATALVGSERFETGQG-KSKREAEQSAAK 199
Query: 77 VA 78
+A
Sbjct: 200 LA 201
>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 228
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIVDDVRYDSLPG-FFNRKAAEQSA 74
K+RLQE+ Q PVYE T G +HE FR+ V D Y PG +R+ AEQ+A
Sbjct: 154 KTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRVGDQEY---PGEGTSRRRAEQAA 210
Query: 75 AEVALVELAKLGKVNEC 91
AE AL L GK E
Sbjct: 211 AECALKALETSGKRQEA 227
>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
Length = 250
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A + +P P YE GP H+ +F +T I+D + G N+KAAEQ AA
Sbjct: 176 WKTLLQERAAERKLPMPEYEASFTGPDHDRFFTATAIIDGKVVGTGQG-HNKKAAEQLAA 234
Query: 76 EVALVEL 82
+ A+ L
Sbjct: 235 KQAVTVL 241
>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
Length = 250
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A + +P P YE GP H+ +F +T I+D + G N+KAAEQ AA
Sbjct: 176 WKTLLQERAAERKLPMPEYEASFTGPDHDRFFTATAIIDGKVVGTGQG-HNKKAAEQLAA 234
Query: 76 EVALVEL 82
+ A+ L
Sbjct: 235 KQAVTVL 241
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQS 73
+KS LQE +Q P Y +K GP H+ +F V VDD + PG N+K AEQ
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTFG--PGMGKNKKTAEQE 213
Query: 74 AAEVALVELAKLGKVNECI 92
AA +A L++L + N I
Sbjct: 214 AARIAYDALSQLPEKNMPI 232
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ G VY + E GP H+ F V ++ V Y++ G ++K AEQ A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSG-KSKKIAEQHA 234
Query: 75 AEVALVEL 82
A++ L +L
Sbjct: 235 AQLTLEKL 242
>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
gi|7531192|sp|O69469.1|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
Length = 238
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y GP H+ F + V+V D Y S G ++K AEQ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIG-HSKKEAEQKAA 220
Query: 76 EVALVELAKLGKVNEC 91
A L LG V +
Sbjct: 221 SAAWKALDVLGGVGKT 236
>gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis]
Length = 451
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 24/114 (21%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K L E+ +K +P PVY T++ + +F+S V VD+++Y S ++K AEQSAA
Sbjct: 324 KMLLLEWCRKRKLPQPVYHTVQRPV--DKFFQSVVKVDEMQYASTLWDKSKKLAEQSAAI 381
Query: 77 VALVELAKLGKVNECISQPIHETGLCKNLLQE--YAQKMNYAIPLYQCRKDEAS 128
V L H GL + + E +AQK + QC++DE +
Sbjct: 382 VCL-----------------HTLGLTEIKMNESDFAQKRKRKL---QCQEDEGT 415
>gi|340030087|ref|ZP_08666150.1| ribonuclease III [Paracoccus sp. TRP]
Length = 229
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P Y +T + GP H P F TV +DD R + G +++ EQ+AA
Sbjct: 159 KTALQEWAQAHGMSPPRYIQTSRSGPDHAPEFEITVRLDDGREAAARGKGTKRSIEQAAA 218
Query: 76 EVALVELAK 84
L ++ +
Sbjct: 219 GAMLEQIER 227
>gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium]
Length = 138
Score = 44.7 bits (104), Expect = 0.092, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 68 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 126
Query: 76 EVALVEL 82
+ L ++
Sbjct: 127 SLMLAKI 133
>gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana)
tropicalis]
gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus
(Silurana) tropicalis]
Length = 495
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 24/114 (21%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K L E+ +K +P PVY T++ + +F+S V VD+++Y S ++K AEQSAA
Sbjct: 368 KMLLLEWCRKRKLPQPVYHTVQRPV--DKFFQSVVKVDEMQYASTLWDKSKKLAEQSAAI 425
Query: 77 VALVELAKLGKVNECISQPIHETGLCKNLLQE--YAQKMNYAIPLYQCRKDEAS 128
V L H GL + + E +AQK + QC++DE +
Sbjct: 426 VCL-----------------HTLGLTEIKMNESDFAQKRKRKL---QCQEDEGT 459
>gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus]
Length = 515
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y Q G+ E GP H+ F V++D+ + G +++ A +A
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN---LLQEYAQKMNYAIPLYQCRKDEASGKV 131
A++A+ L KV +C + + N L+ +AQK ++ QC + +
Sbjct: 67 AKLAVDILDNENKV-DCHTSASEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQ- 124
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+F C +IG Y G+ K+EA+ AA+ A + S + +G
Sbjct: 125 RFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|402849891|ref|ZP_10898111.1| Ribonuclease III [Rhodovulum sp. PH10]
gi|402499830|gb|EJW11522.1| Ribonuclease III [Rhodovulum sp. PH10]
Length = 249
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDV 56
K+ LQE+AQ G+PTP Y E + GP H+P FR V + D+
Sbjct: 175 KTVLQEWAQGRGLPTPTYREVARSGPDHDPEFRVVVELPDL 215
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEI 157
ET K+LLQE Q+ +IP Y+ + F TVE+ + + G A+ +KKEAE
Sbjct: 1 ETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEY 60
Query: 158 KAARTALLAIQ 168
AA+ A A++
Sbjct: 61 DAAKIAYKALK 71
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
KS LQE Q+ P Y++ + GP H P F STV V+ V + ++K AE AA+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKAS-SSKKEAEYDAAK 64
Query: 77 VALVEL 82
+A L
Sbjct: 65 IAYKAL 70
>gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium]
gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium]
gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 44.7 bits (104), Expect = 0.099, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 125
Query: 76 EVALVEL 82
+ L ++
Sbjct: 126 SLMLAKI 132
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ G VY + E GP H F V ++ V Y++ G ++K AEQ A
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSG-KSKKIAEQHA 234
Query: 75 AEVALVEL 82
A++ L +L
Sbjct: 235 AQLTLEKL 242
>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
Length = 520
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQE+ Q+ G P Y +E GP H+ F V D+ +S+ ++KAAEQ A
Sbjct: 450 FKSMLQEFVQEKGNTPPCYTIHREFGPDHDKTFSICVKACDI--ESMGSGKSKKAAEQHA 507
Query: 75 AEVALVELAKLGK 87
A+ AL L KL +
Sbjct: 508 AQNALKSLKKLSR 520
>gi|432909594|ref|XP_004078197.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
[Oryzias latipes]
Length = 1336
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY--DSLPGFFNRKAAEQSAA 75
S L EY+Q++G P T + GP H+P F+ V V + + S P ++KAA Q AA
Sbjct: 712 SVLMEYSQRSGKPIEFIATGQTGPPHDPRFKYRVKVGENLFAESSAP---SKKAARQLAA 768
Query: 76 EVALVELAKLGKVNECISQPIHETGL 101
E A+ EL GK+ +++P+ GL
Sbjct: 769 EEAVKELMADGKLQ--LNKPLLPLGL 792
>gi|301758056|ref|XP_002914888.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Ailuropoda melanoleuca]
Length = 539
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 20 LQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVAL 79
L Y QK + YE KEGP+H F VI+++ +Y G ++K A+ +AA++AL
Sbjct: 14 LNTYCQKHSLVLKYYELSKEGPAHNLKFTFQVIINERKYSEAEG-KSKKEAKNAAAKLAL 72
Query: 80 VELAKLGKVNECISQPIHET------GLCKNL---LQEYAQKMNYAIPLYQCRKDEASGK 130
+L + K +S P +T G +N L AQK ++ QC E G
Sbjct: 73 EKLNEESKAVSPLSVPTTDTSEGVGVGSIENFIGRLNRLAQKEKLSVNYEQCELKEY-GP 131
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASEL 174
+F +IG Y G TK++A+ AA+ A IQS + +
Sbjct: 132 ERFYYRCKIGQKEYAVGGGATKQDAKQMAAKFAYDQIQSEKNSM 175
>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 223
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q + P Y T EG +H F T ++D +R + NR+AAEQ AA
Sbjct: 154 KTRLQEYLQGRRLALPQYALTGAEGEAHAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAA 213
Query: 76 EVAL 79
E AL
Sbjct: 214 ERAL 217
>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
geoffroyi]
Length = 552
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK L +Y QK G+ E GP H+ F VI+D + G ++K A +A
Sbjct: 9 FFKEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEG-RSKKEATNAA 67
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A+VA VE+ L + N+ +S P+ T G L+ AQK + C
Sbjct: 68 AKVA-VEI--LNRENKAVS-PLSLTPTDSSDRLSIGNYIGLINTIAQKKRLTVNYEPCVS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
+G F ++G Y G TK+EA+ AA+ A L I S
Sbjct: 124 G-MNGPEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQIHKS 168
>gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2]
gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2]
Length = 282
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG
Sbjct: 209 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV--------DLPGL 249
>gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27]
gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27]
Length = 234
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQEY QK P YE I E GP H F VIV + + ++ N+K AEQ +
Sbjct: 161 FKSILQEYVQKEFRTVPTYELIAERGPDHMKEFEIQVIVGNYKEKAVAR--NKKKAEQLS 218
Query: 75 AEVALVEL 82
A+ ++L
Sbjct: 219 AKALCIKL 226
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+RLQEYAQ TP YE I+E GP HE F + V+ + S ++KAAEQ A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVNK-EFTSQGKGRSKKAAEQDA 521
Query: 75 AEVALVELAK 84
A L+ L +
Sbjct: 522 AREVLILLGQ 531
>gi|414162328|ref|ZP_11418575.1| ribonuclease 3 [Afipia felis ATCC 53690]
gi|410880108|gb|EKS27948.1| ribonuclease 3 [Afipia felis ATCC 53690]
Length = 290
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG
Sbjct: 217 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV--------DLPGL 257
>gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5]
gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5]
Length = 288
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG
Sbjct: 215 KTILQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV--------DLPGL 255
>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
Length = 268
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTP Y + + GP H+P FR V LPG +++
Sbjct: 198 KTVLQEWAQGKGLPTPAYREVERTGPDHDPKFRVRV--------ELPGLEPAEGIGGSKR 249
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 250 AAEKEAASAML 260
>gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATG-HNKKLAEQKAA 125
Query: 76 EVALVEL 82
+ L ++
Sbjct: 126 SLMLAKI 132
>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
Length = 256
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A + PVYE + + GP H P FR V V+ + PG+ +++ AEQ
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAVRVESIE----PGYGEGASKRVAEQ 233
Query: 73 SAAEVAL 79
AA L
Sbjct: 234 EAARAVL 240
>gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|22654053|sp|Q8RGX3.1|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 234
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQEY QK P YE + E GP H F VIV + + ++ N+K AEQ +
Sbjct: 161 FKSILQEYVQKEFKTVPTYELVAERGPDHMKEFEIQVIVGNYKEKAVAR--NKKKAEQLS 218
Query: 75 AEVALVELAKLG-KVNECI 92
A+ + KLG K NE +
Sbjct: 219 AKALCI---KLGVKYNEAL 234
>gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A]
gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A]
Length = 266
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQE+AQ G+PTPVY + + GP H+P FR V
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV 233
>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|90101634|sp|Q4FLS9.1|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 222
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY+ K P+Y+ I GP H+P F+ V + + ++ + G ++K AEQ+AA
Sbjct: 154 KTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTAEG-TSKKDAEQNAA 212
Query: 76 EVALVELAK 84
+ L ++ K
Sbjct: 213 SLCLQDIFK 221
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE+ Q+ G VY I E GP H F V +D + Y++ G ++K AEQ A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTG-KSKKIAEQHA 235
Query: 75 AEVALVEL 82
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255]
gi|90101631|sp|Q3SRB3.1|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255]
Length = 266
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQE+AQ G+PTPVY + + GP H+P FR V
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV 233
>gi|399156568|ref|ZP_10756635.1| ribonuclease 3 [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 246
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 16 FKSRLQEYAQK-AGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+KS LQE+ QK GIPT YE ++E GP HE F V V + Y G N+K A Q
Sbjct: 167 YKSELQEHVQKIMGIPT-TYELVEESGPDHEKEFTMAVYVKEKEYGRGRG-ANKKLASQL 224
Query: 74 AAEVALVEL 82
AAE AL+ +
Sbjct: 225 AAEKALLRI 233
>gi|337741391|ref|YP_004633119.1| ribonuclease 3 [Oligotropha carboxidovorans OM5]
gi|386030407|ref|YP_005951182.1| ribonuclease 3 [Oligotropha carboxidovorans OM4]
gi|336095475|gb|AEI03301.1| ribonuclease 3 [Oligotropha carboxidovorans OM4]
gi|336099055|gb|AEI06878.1| ribonuclease 3 [Oligotropha carboxidovorans OM5]
Length = 278
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+PTPVY + + GP H+P FR V LPG
Sbjct: 205 KTILQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV--------DLPGL 245
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE+ Q+ G VY I E GP H F V +D + Y++ G ++K AEQ A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTG-KSKKIAEQHA 235
Query: 75 AEVALVEL 82
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14]
gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14]
Length = 266
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQE+AQ G+PTPVY + + GP H+P FR V
Sbjct: 198 KTVLQEWAQGQGLPTPVYREVERTGPHHDPRFRVAV 233
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+RLQE +Q+ PVY + E GP H+ F +I+ + + G ++K AEQ+A
Sbjct: 179 YKTRLQEVSQEKFRAVPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNGEG-KSKKQAEQNA 237
Query: 75 AEVALVELAKL 85
A +AL +L L
Sbjct: 238 ARMALAKLGAL 248
>gi|58584360|ref|YP_197933.1| ribonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|75498100|sp|Q5GTI3.1|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 243
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F ++ +++ Y + ++K AEQ A
Sbjct: 171 KTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIEN--YGKVFACASSKKVAEQKA 228
Query: 75 AEVAL 79
AE+ L
Sbjct: 229 AELML 233
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A +P PVY + + GP H P FR V V+ + PG +++ AEQ
Sbjct: 180 KSALQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEGLE----PGHGEGTSKRVAEQ 235
Query: 73 SAAEVALVELAKLGKVNE 90
AA AL+E +G V E
Sbjct: 236 EAAR-ALMEREGIGTVPE 252
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 85 LGKVNECISQPIHETGL--CKNLLQEYAQKMNYAIPLYQCRKDEA-SGKVQFSCTVEIGD 141
+G I Q +HE + K LQEY Q+ +P+YQ + +F V I
Sbjct: 146 IGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG 205
Query: 142 IRYIGGAAKTKKEAEIKAARTAL 164
Y G+ K+KKEAE KAA+ AL
Sbjct: 206 KIYGEGSGKSKKEAEQKAAKDAL 228
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ PVY+ + + GP H+ F V++ Y G ++K AEQ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSG-KSKKEAEQKA 223
Query: 75 AEVALVELAK 84
A+ AL LA+
Sbjct: 224 AKDALSRLAR 233
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ G VY + E GP H F V ++ V Y++ G ++K AEQ A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSG-KSKKIAEQHA 234
Query: 75 AEVALVEL 82
A++ L +L
Sbjct: 235 AQLTLEKL 242
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE+ QK PVYE +K+ GP H+ F TV + Y G ++K AEQ+A
Sbjct: 179 YKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQG-KSKKEAEQNA 237
Query: 75 AEVALVEL 82
A+ A EL
Sbjct: 238 AKAAYEEL 245
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE+ Q+ G VY I E GP H F V +D + Y++ G ++K AEQ A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTG-KSKKIAEQHA 235
Query: 75 AEVALVEL 82
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 85 LGKVNECISQPIHETGL--CKNLLQEYAQKMNYAIPLYQCRKDEA-SGKVQFSCTVEIGD 141
+G I Q +HE + K LQEY Q+ +P+YQ + +F V I
Sbjct: 146 IGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG 205
Query: 142 IRYIGGAAKTKKEAEIKAARTAL 164
Y G+ K+KKEAE KAA+ AL
Sbjct: 206 KIYGEGSGKSKKEAEQKAAKDAL 228
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ PVY+ + + GP H+ F V++ Y G ++K AEQ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSG-KSKKEAEQKA 223
Query: 75 AEVALVELAK 84
A+ AL LA+
Sbjct: 224 AKDALSRLAR 233
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ G VY + E GP H F V ++ V Y++ G ++K AEQ A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSG-KSKKIAEQHA 234
Query: 75 AEVALVEL 82
A++ L +L
Sbjct: 235 AQLTLEKL 242
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 17 KSRLQEYAQK-AGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
K+R QE+ Q+ G P Y T + GPSH P F + V+VD Y G N+K AE+ A
Sbjct: 155 KNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEYGIGKG-RNKKEAEKDA 213
Query: 75 AEVALVELAKLG 86
AE AL +L K G
Sbjct: 214 AEDALAKLKKRG 225
>gi|427789545|gb|JAA60224.1| Putative trna-dihydrouridine synthase [Rhipicephalus pulchellus]
Length = 451
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ L + ++ P P Y+T S E FRS V+VD +Y S N+K AEQSAA
Sbjct: 372 KTVLINWTRRNNYPHPFYKT----ESMEKSFRSVVLVDRKKYSSTYLEKNKKYAEQSAAL 427
Query: 77 VALVEL 82
VAL L
Sbjct: 428 VALYAL 433
>gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 234
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQEY QK P YE + E GP H F VIV + + ++ N+K AEQ +
Sbjct: 161 FKSILQEYVQKEFRTVPTYELVAERGPDHMKEFEIQVIVGNYKEKAVAR--NKKKAEQLS 218
Query: 75 AEVALVEL 82
A+ ++L
Sbjct: 219 AKALCIKL 226
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQE+AQ+ N A+P+Y+ K E F+ +V D++ I G K+KKEAE AA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAI-GIGKSKKEAEQNAA- 208
Query: 162 TALLA 166
TALL+
Sbjct: 209 TALLS 213
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+AQ+ P+Y+ +K EG +H P F +V D++ + ++K AEQ+AA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIGIGK--SKKEAEQNAA 208
Query: 76 EVALVELAKLGKVN 89
L ++ +L K N
Sbjct: 209 TALLSQINELEKKN 222
>gi|389774795|ref|ZP_10192914.1| ribonuclease III [Rhodanobacter spathiphylli B39]
gi|388438394|gb|EIL95149.1| ribonuclease III [Rhodanobacter spathiphylli B39]
Length = 219
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFR-STVIVDDVRYDSLPGFFNRKAAEQSA 74
K+RLQE+ Q G+P P YE + G H F S I + + + + NR+AAEQ A
Sbjct: 145 KTRLQEWLQAKGLPLPQYELLASHGEDHAKTFDVSCAITEPMAFVAEAHGGNRRAAEQDA 204
Query: 75 AEVALVEL 82
AE+ L +L
Sbjct: 205 AELVLSQL 212
>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
gi|238690159|sp|B4RCU4.1|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
Length = 238
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQE+ Q G+P P YE + +EGP H P F V V + G +R+AAE++AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEG-RSRQAAEKAAA 221
Query: 76 EVALV--ELAKLGKVNE 90
+ L+ E + GKV E
Sbjct: 222 QCMLLKREGPEPGKVGE 238
>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 237
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+RLQE QK G VY +K EGP H F + +++++ G F++K +EQ+A
Sbjct: 161 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVMGQGVG-FSKKESEQNA 219
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 220 AKAALQRLGEI 230
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A G P Y +EGP HE F + +V D + G ++K AEQ AA
Sbjct: 175 WKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVG-RSKKEAEQQAA 233
Query: 76 EVALVELAK 84
A EL +
Sbjct: 234 HTAWTELTR 242
>gi|422338668|ref|ZP_16419628.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355371795|gb|EHG19138.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 234
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQEY QK P YE + E GP H F VIV + + ++ N+K AEQ +
Sbjct: 161 FKSILQEYVQKEFRTVPTYELVAERGPDHMKEFEIQVIVGNYKEKAVAR--NKKKAEQLS 218
Query: 75 AEVALVEL 82
A+ ++L
Sbjct: 219 AKALCIKL 226
>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
Length = 248
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE Q+ + Y +KE GP+H+ F S VI++DV G ++K
Sbjct: 171 FSDVMDFKSQLQELVQQTSSGSLQYAIVKENGPAHKRTFVSQVILNDVVISEGHG-KSKK 229
Query: 69 AAEQSAAEVAL 79
AEQ AA++A+
Sbjct: 230 EAEQKAAQIAI 240
>gi|359411403|ref|ZP_09203868.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
gi|357170287|gb|EHI98461.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
Length = 232
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE+ QK G YE K EGP H F + V++D G +++K AEQ+A
Sbjct: 161 FKTKLQEFLQKDGEVAIQYELTKFEGPPHRRKFFTNVVIDKKLMGEGSG-YSKKEAEQNA 219
Query: 75 AEVAL 79
A+ AL
Sbjct: 220 AKQAL 224
>gi|417961865|ref|ZP_12604190.1| Ribonuclease 3, partial [Candidatus Arthromitus sp. SFB-2]
gi|380331937|gb|EIA22872.1| Ribonuclease 3, partial [Candidatus Arthromitus sp. SFB-2]
Length = 105
Score = 43.1 bits (100), Expect = 0.24, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q Y IKE GP H+ F VI+ D Y+S G ++K AEQ+AA
Sbjct: 40 KTRLQEYIQSKTTDKIKYNLIKEEGPPHDKIFYVQVIIGDKNYESGTG-KSKKEAEQNAA 98
Query: 76 E 76
+
Sbjct: 99 Q 99
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+FK++LQE + P Y +K+G H+P F +TV VD ++ S + K A+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 75 AEVAL 79
A++A
Sbjct: 61 AKLAF 65
>gi|406945190|gb|EKD76766.1| hypothetical protein ACD_42C00622G0001, partial [uncultured
bacterium]
Length = 130
Score = 43.1 bits (100), Expect = 0.24, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQE+ Q +P P+YE G +HE F T V+ + ++++ +R+ AEQ AA+
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 77 VALVELAK 84
+ L ++ K
Sbjct: 123 LFLAKINK 130
>gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
Length = 230
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSL-PGFFNRKAAEQSA 74
KSRLQE K G+ P Y I K GP H P V V+ YDS+ NRK AEQ A
Sbjct: 154 KSRLQELVMKQGLALPHYRLISKSGPDHAPEMIYEVSVEG--YDSIVASASNRKLAEQQA 211
Query: 75 AEVALVELAK 84
A + + ++ K
Sbjct: 212 AALMVAQITK 221
>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
Length = 241
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+RLQE QK G VY +K EGP H F + +++++ G F++K +EQ+A
Sbjct: 165 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVMGQGVG-FSKKESEQNA 223
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 224 AKAALQRLGEI 234
>gi|348527040|ref|XP_003451027.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Oreochromis niloticus]
Length = 1336
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY--DSLPGFFNRKAAEQSAA 75
S L EY+Q++G P T + GP H+P F V V + + S P N+KAA Q AA
Sbjct: 722 SVLMEYSQRSGKPIEFINTGQAGPPHDPRFMYRVKVGESLFAEASAP---NKKAARQLAA 778
Query: 76 EVALVELAKLGKV 88
E A+ EL GK+
Sbjct: 779 EEAVKELMADGKL 791
>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
Length = 838
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 50/206 (24%)
Query: 16 FKSRLQEYAQKAGIPTPVYET--IKEGPSHE-PWFRSTVIVDDVRYDSLPGFFNR-KAAE 71
+K+ LQE+ QK G+ +P YET IKE P W I +Y S K AE
Sbjct: 409 YKNVLQEHCQKTGLHSPDYETTKIKEDPPQFIAWLTYKAIGKSKKYLSESLIHTSAKKAE 468
Query: 72 QSAAEVALVELAKLG--------------------KVNECISQPI--------------- 96
QSAA+VA ++L KL K E + P
Sbjct: 469 QSAAKVACLDL-KLALPEPIRILPKPMKSTQPTPPKEKELMQPPDNSDEKSQTHSPPAGN 527
Query: 97 --HETGL-CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTV---EIGD-IRYI--GG 147
H+ + KN+LQE+ QK + P Y+ K + QF+ + +G+ ++Y G
Sbjct: 528 QQHDDFINYKNILQEHCQKNRFDTPKYESTKIQ-DNPAQFTTVLTYKTLGNTVKYSSEGL 586
Query: 148 AAKTKKEAEIKAARTALLAIQSSASE 173
KKE+E AA+ A L + +S+
Sbjct: 587 THSNKKESEQSAAKVACLGLDLVSSD 612
>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422346389|ref|ZP_16427303.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|422874639|ref|ZP_16921124.1| ribonuclease III [Clostridium perfringens F262]
gi|22654058|sp|Q8XJN8.1|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|373225934|gb|EHP48261.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|380304280|gb|EIA16569.1| ribonuclease III [Clostridium perfringens F262]
Length = 237
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+RLQE QK G VY +K EGP H F + +++++ G F++K +EQ+A
Sbjct: 161 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIMGQGVG-FSKKESEQNA 219
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 220 AKAALQRLGEI 230
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAE 71
FK+ LQE++Q+ P YE IKE GP H F V ++ D L G N+K+AE
Sbjct: 163 FKTILQEFSQREYKVIPSYEVIKEMGPDHRKSFEIAVKIN----DELMGLGTGRNKKSAE 218
Query: 72 QSAA 75
QSAA
Sbjct: 219 QSAA 222
>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
Length = 241
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+RLQE QK G VY +K EGP H F + +++++ G F++K +EQ+A
Sbjct: 165 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIMGQGVG-FSKKESEQNA 223
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 224 AKAALQRLGEI 234
>gi|226735379|sp|B8CQJ5.1|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3]
Length = 225
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ QK P P+Y+ + EG +HE F +V+D+R + +R+ AEQSAA
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
L EL K
Sbjct: 217 AQVL-ELIK 224
>gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 43.1 bits (100), Expect = 0.27, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATG-QNKKLAEQKAA 125
Query: 76 EVALVEL 82
+ L ++
Sbjct: 126 SLMLAKI 132
>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
Length = 243
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSA 74
K+ LQE+ QK +P P YE K+ GP+H P F +V + + R + ++K AEQ A
Sbjct: 169 KTSLQEWTQKNKLPLPKYELKKQTGPAHNPEFTISVYIKNYGRVSACAS--SKKVAEQKA 226
Query: 75 AEVALVELAKLGKVN 89
AE+ +GK+N
Sbjct: 227 AELM------IGKIN 235
>gi|376002801|ref|ZP_09780623.1| Ribonuclease III [Arthrospira sp. PCC 8005]
gi|375328857|emb|CCE16376.1| Ribonuclease III [Arthrospira sp. PCC 8005]
Length = 394
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 17 KSRLQEYAQK-AGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
K+RLQE+ QK G TP YETIKE G H+ F V+V Y G ++K A + A
Sbjct: 323 KNRLQEWVQKNIGPITPEYETIKEEGADHKKQFTVQVMVQGKVYGEGKGS-SKKEASKKA 381
Query: 75 AEVALVELAKLG 86
AE AL ++ KLG
Sbjct: 382 AEKALGKIDKLG 393
>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
Length = 243
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQ 72
Y +K+ LQE Q+AG YE + E GP H F +V+V+ + G N+K AEQ
Sbjct: 168 YDYKTVLQEVVQQAGECKISYEVVAEYGPDHNKTFEVSVLVNHQHLGAGSGK-NKKEAEQ 226
Query: 73 SAAEVALVELAKLGKVN 89
+AA+ AL +L KL ++
Sbjct: 227 NAAKEALQKLKKLNSLD 243
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTV-----IVDDVRYDSLPGFFNRKA 69
++K++LQE AQ++ P Y +++EGP H P F++ V I Y S +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCS-----TLRQ 55
Query: 70 AEQSAAEVALVELAKLG 86
AE SAAEV L L G
Sbjct: 56 AEHSAAEVTLNSLTHRG 72
>gi|389844183|ref|YP_006346263.1| ribonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858929|gb|AFK07020.1| ribonuclease III [Mesotoga prima MesG1.Ag.4.2]
Length = 241
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P+YET+ EGP E WF+ V +D G +KAAEQ A
Sbjct: 168 YKTSLQELTQARFGSRPLYETLLDEGPPQEKWFKVGVFLDGSLMGEGEG-RTKKAAEQLA 226
Query: 75 AEVALVELAKLG 86
A+ AL L K G
Sbjct: 227 AKHALEILKKSG 238
>gi|355572774|ref|ZP_09043840.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
gi|354824318|gb|EHF08571.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
Length = 240
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K RLQE+ QK PVYE I KEGP H P F V V V + G + A Q A
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRG-ITKTQATQEA 228
Query: 75 AEVALVELAKL 85
A AL L L
Sbjct: 229 ARNALCSLGLL 239
>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
Length = 258
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAE 71
+KS+L EYAQ + P Y+ IK EGP HE F V V D + G N+K+AE
Sbjct: 188 YKSQLLEYAQANKLELPNYKVIKEEGPQHERIFTVQVSVG----DKIIGIGKGKNKKSAE 243
Query: 72 QSAAEVALVELAK 84
Q+AA+ A+ ++ K
Sbjct: 244 QNAAQKAMEKILK 256
>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
Length = 228
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDV 56
KS+LQE+A + G PVYET+ ++GP H P F V +D V
Sbjct: 159 KSQLQEWAAQKGYGVPVYETVARKGPDHRPVFEIEVRLDGV 199
>gi|418016286|ref|ZP_12655851.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|345506621|gb|EGX28915.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
Length = 230
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q Y IKE GP H+ F VI+ D Y+S G ++K AEQ+AA
Sbjct: 164 KTRLQEYIQSKTTDKIKYNLIKEEGPPHDKIFYVQVIIGDKNYESGTG-KSKKEAEQNAA 222
Query: 76 EVAL 79
+ L
Sbjct: 223 QKTL 226
>gi|383790883|ref|YP_005475457.1| ribonuclease III [Spirochaeta africana DSM 8902]
gi|383107417|gb|AFG37750.1| ribonuclease III [Spirochaeta africana DSM 8902]
Length = 247
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+ LQE QK P Y +K+ GP H+ F +V D R+ G N+K AE++A
Sbjct: 177 FKTLLQEQVQKTYKTYPRYSVVKKTGPDHDRTFWVEAVVQDRRFGPCSG-KNKKEAERAA 235
Query: 75 AEVALVEL 82
A++A EL
Sbjct: 236 AQLAYEEL 243
>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI--KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+K+ LQE QK P P+ I +EGP H+ F + V+ + G ++K AEQ
Sbjct: 165 YKTELQEMLQKKS-PEPISYVILNEEGPDHQKLFTAGVVYCGIIIGQGTGR-SKKEAEQQ 222
Query: 74 AAEVALVELAKLGKVNECISQPIH 97
AA++AL+EL G++N + +H
Sbjct: 223 AAKIALLELPSNGEINLRVRSHLH 246
>gi|417965773|ref|ZP_12607254.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-4]
gi|417966318|ref|ZP_12607705.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-5]
gi|417967939|ref|ZP_12608995.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-co]
gi|418372566|ref|ZP_12964658.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380335812|gb|EIA25918.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-4]
gi|380340521|gb|EIA29102.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-co]
gi|380342235|gb|EIA30680.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380343077|gb|EIA31495.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-5]
Length = 227
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q Y IKE GP H+ F VI+ D Y+S G ++K AEQ+AA
Sbjct: 161 KTRLQEYIQSKTTDKIKYNLIKEEGPPHDKIFYVQVIIGDKNYESGTG-KSKKEAEQNAA 219
Query: 76 EVAL 79
+ L
Sbjct: 220 QKTL 223
>gi|451818132|ref|YP_007454333.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451784111|gb|AGF55079.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 232
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE +K EGP H F + V +DD G +++K +EQ+A
Sbjct: 161 FKTKLQELLQKDGEVAIHYELVKYEGPPHRRKFYTNVKIDDKLMGEGSG-YSKKESEQNA 219
Query: 75 AEVAL 79
A+ AL
Sbjct: 220 AKQAL 224
>gi|392950932|ref|ZP_10316487.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
gi|391859894|gb|EIT70422.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
Length = 228
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFN-RKAAEQSA 74
K+RLQE+ Q P P+YE + E GP H F + D+ + + F N R++AEQ A
Sbjct: 157 KTRLQEWLQARARPLPIYEVLSEAGPPHRRQFVVRARLLDMEHTA-EAFSNSRRSAEQKA 215
Query: 75 AEVALVEL 82
AE+ L L
Sbjct: 216 AELLLQRL 223
>gi|342732311|ref|YP_004771150.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455714|ref|YP_005668309.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|342329766|dbj|BAK56408.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|346984057|dbj|BAK79733.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
Length = 227
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q Y IKE GP H+ F VI+ D Y+S G ++K AEQ+AA
Sbjct: 161 KTRLQEYIQSKTTDKIKYNLIKEEGPPHDKIFYVQVIIGDKNYESGTG-KSKKEAEQNAA 219
Query: 76 EVAL 79
+ L
Sbjct: 220 QKTL 223
>gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633]
gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633]
Length = 234
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+ LQEY Q+ G YE +K EGPSH ++ V V+D Y+ G +KAAEQ +
Sbjct: 164 FKTELQEYFQRNGNVNIRYELLKEEGPSHARYYTVQVHVNDKGYEIGEG-KTKKAAEQLS 222
Query: 75 AEVALVEL 82
A L +L
Sbjct: 223 ARRTLEKL 230
>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|238691613|sp|B2TJ22.1|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 232
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE +K EGP H F + VI+++ G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEILIQYELVKYEGPPHRRKFFTNVIINEKVMGIGEG-YSKKEAEQNA 219
Query: 75 AEVALVELAK 84
A+ AL L K
Sbjct: 220 AKEALKRLEK 229
>gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans]
gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans]
Length = 460
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K++L +A KAG P YET + FRS DD R+ S N+K AEQ AA
Sbjct: 383 KTQLYVHAVKAGKSPPAYET----QQCDKLFRSICTYDDQRFSSSYWEKNKKQAEQGAAL 438
Query: 77 VALVELAKL 85
VAL+ L +L
Sbjct: 439 VALLHLGQL 447
>gi|328543513|ref|YP_004303622.1| ribonuclease III [Polymorphum gilvum SL003B-26A1]
gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1]
Length = 234
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIVDDVRYDSLPG---FFNRKAAEQ 72
K+ LQE+AQ G+P P Y+ T +EGP H P F V V PG +++ AEQ
Sbjct: 164 KTTLQEWAQSKGLPAPGYQVTTREGPDHAPVFVVAVTVSGY----APGEGRGGSKRIAEQ 219
Query: 73 SAAEVAL 79
+AAE L
Sbjct: 220 NAAEAVL 226
>gi|348574347|ref|XP_003472952.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Cavia porcellus]
Length = 481
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 20 LQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVAL 79
L +Y QK G+ + GP H F VI++D + G ++ A+ SAA++A
Sbjct: 14 LNKYQQKHGVKVSYEKLSVTGPPHNSVFTFRVIIEDRTFPQGEG-RTKQDAKNSAAKIAF 72
Query: 80 VELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
L + K + S +T GL Q+Y +NY L +E
Sbjct: 73 TILNQEKKESSSSSLMPRDTSEESANGNYVGLLNRFSQKYRLLINYEYDL----GEEGPQ 128
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
+ QF C +IG Y G A TKK+A+ AA+ A I S
Sbjct: 129 RFQFKC--KIGQKVYGFGVASTKKDAKQLAAKLAFDKISKEIS 169
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY QK P Y +K+ GP H+ F V V+D+ + G N+K AEQ+A
Sbjct: 176 YKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSFGPAKG-RNKKEAEQNA 234
Query: 75 AEVA 78
A++A
Sbjct: 235 AKLA 238
>gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio]
Length = 504
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K L E+++K + PVYET E S + F+STVIV D +Y S ++K AEQ+AA
Sbjct: 374 KMFLLEWSRKEKLEQPVYET--EQRSQDRGFQSTVIVADKKYRSTLWEKSKKFAEQAAAL 431
Query: 77 VALVEL 82
V L L
Sbjct: 432 VCLRTL 437
>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
Length = 256
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS+LQE Q+ G+ YE I+E GP+H F S V + D + + + ++K AEQ A
Sbjct: 186 FKSQLQEAIQRVGLGQIEYEIIEERGPAHSREFISRVHIAD-KLEGIGTGRSKKEAEQQA 244
Query: 75 AEVALVEL 82
A+ AL+EL
Sbjct: 245 AKQALLEL 252
>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
Length = 230
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY Q + PVY + EGP+H+ F+ + + + ++ +R+ AEQ AA
Sbjct: 157 KTQLQEYLQAKKLALPVYTILALEGPAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAA 216
Query: 76 EVALVELA 83
E L ELA
Sbjct: 217 EKILEELA 224
>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
gi|81666891|sp|Q7VRR0.1|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
Length = 232
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P+Y + +G +H+ F V ++Y + +R+ AEQ AA
Sbjct: 160 KTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAA 219
Query: 76 EVALVELAKL 85
E AL L ++
Sbjct: 220 ENALKFLIEI 229
>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|238689672|sp|B2V4D6.1|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 232
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE +K EGP H F + VI+++ G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEILIQYELLKYEGPPHRRKFFTNVIINEKVMGIGEG-YSKKEAEQNA 219
Query: 75 AEVALVELAK 84
A+ AL L K
Sbjct: 220 AKEALKRLEK 229
>gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium]
Length = 156
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
K+ LQE+AQ G+ P Y + K GP H P F TV V Y++L N+K AEQ A
Sbjct: 86 KTILQEWAQSKGLLAPSYHIVNKSGPDHNPIF--TVEVRMHSYETLQATGNNKKIAEQKA 143
Query: 75 AEVAL 79
A + L
Sbjct: 144 ASLML 148
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQ++AQ+ TP Y + E GP H F+ + V +Y + G N+K AEQ A
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWG-RNKKEAEQRA 255
Query: 75 AEVALVEL 82
A AL E+
Sbjct: 256 ANNALAEI 263
>gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia]
gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia]
Length = 473
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K++L +A KAG P YET + FRS DD R+ S N+K A
Sbjct: 390 SDNHLPKTQLYVHAVKAGKSPPAYET----QQCDKLFRSICTYDDQRFSSSYWEKNKKQA 445
Query: 71 EQSAAEVALVELAKL 85
EQ AA VAL+ L L
Sbjct: 446 EQGAALVALLHLGHL 460
>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
Length = 244
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFR 48
KS LQE+AQ G+PTP Y + + GP H P FR
Sbjct: 167 KSALQEWAQGLGLPTPTYAVVERAGPDHAPIFR 199
>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
Length = 194
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY QK P Y + K GP H FR V + D +Y G N+K AEQSA
Sbjct: 123 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGK-NKKEAEQSA 181
Query: 75 AEVA 78
A +A
Sbjct: 182 ASIA 185
>gi|157088318|gb|ABV21735.1| dsRNA-dependent protein kinase [Paralichthys olivaceus]
Length = 688
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+ ++L EYAQ++ + +GP H F IV++ + G N+K A Q+AA
Sbjct: 6 YVAKLNEYAQRSRSVLRYEDVGADGPDHIKTFTIRAIVNNKVFPDGTG-NNKKEARQNAA 64
Query: 76 EVALVELAKLGKVNECISQ-----------PIHETGLCKN----LLQEYAQKMNYAI-PL 119
+ AL L + V C+SQ PIH+T + N L EY K I P+
Sbjct: 65 QNALRGLLEESSV--CLSQQTENTAEASTAPIHQTIISNNSYVCWLNEYGNKNKVFIRPV 122
Query: 120 YQCRKDEASGKVQFS-C-TVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
R G + S C + +GD + G KT+KEA+ +AA+ I
Sbjct: 123 ESTR----LGPINASNCSSFVVGDKEFPAGYGKTRKEAKEEAAKLVYHEI 168
>gi|371943592|gb|AEX61420.1| hypothetical protein c7_L354 [Megavirus courdo7]
Length = 246
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVI 52
K++LQEY QK +P P+Y +I GP H + S+++
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSISSGPDHNKIWTSSIV 40
>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
Length = 256
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A + PVYE + + GP H P FR V+ + PG+ +++ AEQ
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIE----PGYGEGASKRVAEQ 233
Query: 73 SAAEVAL 79
AA L
Sbjct: 234 EAARAVL 240
>gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis]
gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis]
gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
Length = 463
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K+ L YA K G P YET + FR+ DD RY S N+K A
Sbjct: 380 SDNHLPKTVLYVYAGKMGKSPPAYET----QQCDKLFRAICSYDDQRYSSTFWEKNKKQA 435
Query: 71 EQSAAEVALVELAKLGKVNECISQPIHETG 100
EQ AA VAL+ + +L + +P+ E G
Sbjct: 436 EQGAALVALLHIGQLQE------EPLRENG 459
>gi|399910407|ref|ZP_10778721.1| ribonuclease III [Halomonas sp. KM-1]
Length = 230
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q P P Y+ + EG +H+ F V+ + +L +R+ AEQ AA
Sbjct: 156 KTRLQEFLQSRQSPLPRYDVVSVEGEAHDQTFTVECHVELLATHTLGTGSSRRHAEQQAA 215
Query: 76 EVALVEL 82
E+AL++L
Sbjct: 216 ELALLQL 222
>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|418058990|ref|ZP_12696951.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
gi|373567497|gb|EHP93465.1| ribonuclease III [Methylobacterium extorquens DSM 13060]
Length = 256
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A + PVYE + + GP H P FR V+ + PG+ +++ AEQ
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIE----PGYGEGASKRVAEQ 233
Query: 73 SAAEVAL 79
AA L
Sbjct: 234 EAARAVL 240
>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium extorquens CM4]
gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium extorquens CM4]
Length = 256
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A + PVYE + + GP H P FR V+ + PG+ +++ AEQ
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIE----PGYGEGASKRVAEQ 233
Query: 73 SAAEVAL 79
AA L
Sbjct: 234 EAARAVL 240
>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
Length = 256
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAEQ 72
KS LQE+A + PVYE + + GP H P FR V+ + PG+ +++ AEQ
Sbjct: 178 KSALQEWAMARSLAIPVYEVVERSGPDHAPVFRIAARVEGIE----PGYGEGASKRVAEQ 233
Query: 73 SAAEVAL 79
AA L
Sbjct: 234 EAARAVL 240
>gi|386346835|ref|YP_006045084.1| ribonuclease 3 [Spirochaeta thermophila DSM 6578]
gi|339411802|gb|AEJ61367.1| Ribonuclease 3 [Spirochaeta thermophila DSM 6578]
Length = 251
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY QK P Y + K GP H FR V + D +Y G N+K AEQSA
Sbjct: 180 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGK-NKKEAEQSA 238
Query: 75 AEVA 78
A +A
Sbjct: 239 ASIA 242
>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
Length = 248
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE+ QK P Y ++ GP H+ F +V + DV Y G N+K+AEQ+A
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKLGDVVYGPASGK-NKKSAEQAA 237
Query: 75 AEVA 78
A VA
Sbjct: 238 AGVA 241
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A K G P+YET+++ GPSH P F V V + G ++AAEQ AA
Sbjct: 157 KTALQEWALKRGQILPLYETLEQSGPSHAPLFVVRVSVGVESATAQAG--AKRAAEQEAA 214
Query: 76 EVALVELAK 84
+ L +L K
Sbjct: 215 RLLLGQLPK 223
>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
Length = 228
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDD--VRYDSLPGFFNRKAAEQS 73
K+ LQE+AQ G+P P Y +T ++GP H P F T +++ S P +++ AEQ+
Sbjct: 159 KTALQEWAQARGLPPPAYVQTDRQGPDHAPVFTITARIENGASAVASAP---SKRQAEQA 215
Query: 74 AAEVALVEL 82
AA+ L +L
Sbjct: 216 AAKTLLAQL 224
>gi|371945204|gb|AEX63024.1| hypothetical protein mv_R822 [Moumouvirus Monve]
Length = 100
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRS--TVIVDDVRYDSLPG--FFNRKAAEQ 72
K++LQEY QK +P P+Y + G +HE + S TVI+++ Y +L G ++N K Q
Sbjct: 4 KNKLQEYFQKNKLPLPIYSSTSIGAAHEKKWTSNITVIINNKEY-TLIGDKYYNSKTESQ 62
Query: 73 -SAAEVALVELAKLGKVNECISQP 95
AE L + K N+ + P
Sbjct: 63 LKVAEQMLDHINNQNKSNKIENLP 86
>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
gi|189043303|sp|A6LSM2.1|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE K EGP H F + V++D G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEVVIQYELTKFEGPPHRRKFFTNVVIDKKLMGEGSG-YSKKEAEQNA 219
Query: 75 AEVAL 79
A+ AL
Sbjct: 220 AKQAL 224
>gi|402496724|ref|YP_006555984.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649997|emb|CCF78167.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 235
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSA 74
K+ LQE+ QK +P P YE K+ GP+H P F +V + + R + ++K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPKYELKKQTGPAHNPEFTISVYIKNHGRVSACAS--SKKVAEQKA 218
Query: 75 AEVALVELAKLGKVN 89
AE+ +GK+N
Sbjct: 219 AELM------IGKIN 227
>gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus
trivirgatus]
Length = 549
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 16/166 (9%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y QK G+ E GP H+ F VI+D + G K ++A
Sbjct: 9 FFMEELNKYRQKQGVVLRYEELPNSGPPHDRRFTFQVIIDGREFPEAEG--KSKKEAKNA 66
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A VE+ L K N+ +S P+ T G L+ +AQK + QC
Sbjct: 67 AAKVAVEI--LNKENKAVS-PLSLTPTDSAERSSIGNYIGLINRFAQKNRLTVNYEQCAS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
+G F ++G Y G TK+EA+ AA+ A L I S
Sbjct: 124 G-VNGPAGFHYKCKVGQKEYGIGTGSTKQEAKQMAAKLAYLQIHKS 168
>gi|392415756|ref|YP_006452361.1| ribonuclease III [Mycobacterium chubuense NBB4]
gi|390615532|gb|AFM16682.1| ribonuclease III [Mycobacterium chubuense NBB4]
Length = 230
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H+ F +TV+++DV Y
Sbjct: 162 WKSSLQELTAARGLGVPTYLVTSTGPDHDKEFTATVVINDVEY 204
>gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 242
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 12 NCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
N +K+ LQE QK YE + E GP H+ F V ++D Y + G N+K A
Sbjct: 169 NMKDYKTTLQEVVQKHVDSKIAYELLTETGPDHDKTFEFAVRINDAVYGTGKGR-NKKEA 227
Query: 71 EQSAAEVALVELAKL 85
EQ AA AL ++ KL
Sbjct: 228 EQGAAREALRKMKKL 242
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS+LQ Q+ G P Y+ K+G H P F +TV V+ + S + K A+ A
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 75 AEVAL 79
A++A
Sbjct: 61 AKLAF 65
>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
Length = 1211
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 16 FKSRLQEYAQK--AGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFF------N 66
+K+ LQ++ QK +P P Y ++I E E F STV R+++ F +
Sbjct: 1062 YKAILQQHVQKQRLQLPPPKYNDSITE----EKTFLSTV-----RFETAGAFLTTEVAPS 1112
Query: 67 RKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYA-IPLYQCRKD 125
+K +EQ+AA+ ++++L + NE K +LQ+YA K++ A +P YQ
Sbjct: 1113 KKDSEQNAAK-SVIDLLEHRSDNE---------RNYKGVLQQYAIKLDSADVPKYQTYSS 1162
Query: 126 EASGKVQFSC--TVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
E K SC + A +KKEA+ +AAR A+
Sbjct: 1163 EGGFKTVVSCRAITKTASFEVTSEACNSKKEAQQRAARRAV 1203
>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
Length = 232
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 58 YDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAI 117
+++L G + + +A VAL L LGK+N+ + I TG K +LQE+ Q +
Sbjct: 124 FEALIGAIFKDSDYYTAKNVALKFL--LGKINKL--EEIEGTGDYKTILQEFVQGKYKKM 179
Query: 118 PLYQCRKDEA--SGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
P Y+ + + KV F V D Y G K+KKEAE AA+ AL
Sbjct: 180 PEYKLLRTKGPDHNKV-FEICVRWNDKIYGIGTGKSKKEAEKHAAKEAL 227
>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
Length = 263
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
S+ FKS+LQE+ Q+ + YE ++E GP+H F S V++++ G ++
Sbjct: 184 AFSHMMDFKSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNETLGVGTG-RSK 242
Query: 68 KAAEQSAAEVALVELAK 84
K AEQ AA+ AL+ L++
Sbjct: 243 KEAEQHAAQQALITLSQ 259
>gi|389877454|ref|YP_006371019.1| RNAse III [Tistrella mobilis KA081020-065]
gi|388528238|gb|AFK53435.1| RNAse III [Tistrella mobilis KA081020-065]
Length = 242
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ PVY I +EGP H P FR V + + G +++ AEQ+AA
Sbjct: 169 KTALQEWAQARGLEAPVYTVIGREGPDHAPSFRVRAQVARLGAEEATG-ASKRIAEQAAA 227
Query: 76 EVAL 79
+ L
Sbjct: 228 QSLL 231
>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
Length = 226
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY Q T YE + E GPS+ P F V+VD + + G ++K AEQ+A
Sbjct: 158 YKTKLQEYVQSDSRQTVKYELVSETGPSNAPEFVMNVLVDGLVLGTGSG-QSKKQAEQNA 216
Query: 75 AEVALVELAK 84
A A ++AK
Sbjct: 217 ARNAFEKMAK 226
>gi|402832828|ref|ZP_10881457.1| ribonuclease III [Selenomonas sp. CM52]
gi|402282311|gb|EJU30869.1| ribonuclease III [Selenomonas sp. CM52]
Length = 242
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 12 NCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
N +K+ LQE QK YE + E GP H+ F V ++D Y + G N+K A
Sbjct: 169 NMKDYKTTLQEVVQKHVDSKIAYELLTETGPDHDKTFEFAVRINDAVYGTGKGR-NKKEA 227
Query: 71 EQSAAEVALVELAKL 85
EQ AA AL ++ KL
Sbjct: 228 EQGAAREALRKMKKL 242
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS-LPGFFNRKAAEQS 73
++KS+LQ+ +Q+ G P E KEG H P F +TV VD + + LP + K A+ +
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPS-SSSKEAQNA 59
Query: 74 AAEVA 78
AA+ A
Sbjct: 60 AAKQA 64
>gi|29292938|dbj|BAC66440.1| double stranded RNA-dependent protein kinase [Bos taurus]
Length = 533
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
+G S C+ + L +Y QK G+ E K GP H F VI+DD Y G
Sbjct: 3 TGRSPCF-YIEELNKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEG---- 57
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNL------------LQEYAQKMNY 115
++ +++ A + L + K + +S + L N+ L +QK N
Sbjct: 58 RSKKEAKNAAAKLALEIINKDRKSVS---FSSQLTTNIPEGPPIENYIGRLNTISQKKNL 114
Query: 116 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
+ +C K + G F +IG Y G TK+EA+ AA+ A I+S
Sbjct: 115 CVTYEEC-KSKGDGPEGFHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKIES 167
>gi|373498045|ref|ZP_09588560.1| ribonuclease III [Fusobacterium sp. 12_1B]
gi|404367694|ref|ZP_10973056.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|371962085|gb|EHO79694.1| ribonuclease III [Fusobacterium sp. 12_1B]
Length = 235
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+ LQEY+Q+ P YE I+E GP H+ F V + D R G N+K+AEQSA
Sbjct: 162 FKTILQEYSQREYKIIPSYEVIRETGPDHQKIFEIEVKIGD-RTGRGTG-KNKKSAEQSA 219
Query: 75 AE 76
A+
Sbjct: 220 AK 221
>gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264, partial [Aureococcus
anophagefferens]
Length = 227
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEP 45
K+RLQE+AQK P P YETI K GP H+P
Sbjct: 157 KTRLQEHAQKHKRPLPTYETIRKTGPDHDP 186
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+P P Y E +EGP+H+P F V V ++ G +++ AEQ+AA
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAASG-PSKRIAEQAAA 240
Query: 76 EVALVEL 82
L L
Sbjct: 241 RCLLERL 247
>gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4]
gi|189043349|sp|B0TIV7.1|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4]
Length = 225
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ QK P PVY+ + EG +HE F IV+D+ + +R+ AEQSAA
Sbjct: 157 KTLLQEHLQKFRKPLPVYKVVHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
++EL K
Sbjct: 217 -AQVLELMK 224
>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
gi|357049077|ref|ZP_09110306.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
gi|355384377|gb|EHG31445.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
Length = 230
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE Q++G + Y KE GP+HE F + V DDV G ++K +EQ+AA
Sbjct: 163 KTRLQEVLQRSGDVSINYRLTKEEGPAHERIFWTEVYCDDVLIGEGQG-KSKKLSEQAAA 221
Query: 76 EVALVEL 82
E AL L
Sbjct: 222 ENALASL 228
>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
Length = 1382
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYD--SLPGFFNRKAAEQSAA 75
S L E++Q++G P +T +EGPSH+P F V V + + S P ++KAA Q AA
Sbjct: 746 SVLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAP---SKKAARQLAA 802
Query: 76 EVALVELAKLGKVN 89
E A+ EL G ++
Sbjct: 803 EEAVKELMGDGLLH 816
>gi|417931381|ref|ZP_12574749.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
gi|340776120|gb|EGR98170.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
Length = 246
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGKLHAAYTG-HNKKEAEQGAA 231
Query: 76 EVALVEL 82
+A+ L
Sbjct: 232 RLAVCAL 238
>gi|117935051|ref|NP_835210.2| interferon-induced, double-stranded RNA-activated protein kinase
[Bos taurus]
gi|117306699|gb|AAI26647.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Bos
taurus]
gi|296482562|tpg|DAA24677.1| TPA: protein kinase, interferon-inducible double stranded RNA
dependent [Bos taurus]
Length = 533
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
+G S C+ + L +Y QK G+ E K GP H F VI+DD Y G
Sbjct: 3 TGRSPCF-YIEELNKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEG---- 57
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNL------------LQEYAQKMNY 115
++ +++ A + L + K + +S + L N+ L +QK N
Sbjct: 58 RSKKEAKNAAAKLALEIINKDRKSVS---FSSQLTTNIPEGPPIENYIGRLNTISQKKNL 114
Query: 116 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
+ +C K + G F +IG Y G TK+EA+ AA+ A I+S
Sbjct: 115 CVTYEEC-KSKGDGPEGFHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKIES 167
>gi|392957494|ref|ZP_10323017.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
gi|391876457|gb|EIT85054.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
Length = 261
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
Query: 4 NEG-FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDD----VR 57
NEG FS V + FKS+LQEY Q+ G+ T Y I+E GP+H F S V ++ V
Sbjct: 182 NEGAFSHVMD---FKSQLQEYVQREGLGTIDYAIIQEKGPAHNREFVSEVKLNQEGCGVG 238
Query: 58 YDSLPGFFNRKAAEQSAAEVALVELAK 84
+ ++K AEQ AA+ AL ++ K
Sbjct: 239 FGR-----SKKEAEQHAAQEALGKIVK 260
>gi|415996211|ref|ZP_11560416.1| ribonuclease III, partial [Acidithiobacillus sp. GGI-221]
gi|339835666|gb|EGQ63317.1| ribonuclease III [Acidithiobacillus sp. GGI-221]
Length = 177
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+RLQE+ Q G P PVY T+ E G +HE F V S+PG +R+
Sbjct: 106 KTRLQEFLQGQGRPVPVYTTVAEKGQAHERRF--------VARCSVPGAEATEAEDGSRR 157
Query: 69 AAEQSAAEVALVEL 82
AEQ AA + L +L
Sbjct: 158 KAEQQAAALMLAQL 171
>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
gi|226735365|sp|A8I3B5.1|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
Length = 235
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+P PVY + + GP H P FR V VD LPG
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFR--VAVD------LPGL 202
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + + P Y + GP H+ FR+TV V V Y S G ++K AEQ AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEG-RSKKEAEQRAA 238
Query: 76 E 76
E
Sbjct: 239 E 239
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K LQE + +P Y + + F TV +G + Y G ++KKEAE +AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAE 239
Query: 162 TALLAIQS-SASELSGNSAGN 181
AI+ SA G S G
Sbjct: 240 ATWHAIKEMSAKRKGGKSDGK 260
>gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345]
gi|189043351|sp|A8H1C7.1|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345]
Length = 225
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQEY QK P PVY EG +HE F IV+D+ + +R+ AEQSAA
Sbjct: 157 KTLLQEYLQKYRKPLPVYRVAHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
++EL K
Sbjct: 217 -AQVLELIK 224
>gi|350553751|ref|ZP_08922913.1| Ribonuclease 3 [Thiorhodospira sibirica ATCC 700588]
gi|349789977|gb|EGZ43905.1| Ribonuclease 3 [Thiorhodospira sibirica ATCC 700588]
Length = 228
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q+ G P P YE G HE FR+ ++ ++ +R+ AEQ+AA
Sbjct: 153 KTRLQEYLQEKGFPVPQYELQDITGKPHEQHFRALCLIHSHDLKAIGEGSSRRKAEQAAA 212
Query: 76 EVALVEL 82
L +L
Sbjct: 213 AQILEKL 219
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQEYA G P YE + + GPSH P FR V V + L G ++ AEQ+AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEGLAG--TKREAEQNAA 213
Query: 76 EVALVEL 82
L +L
Sbjct: 214 RDLLEQL 220
>gi|33864214|ref|NP_895774.1| ribonuclease III [Prochlorococcus marinus str. MIT 9313]
gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
Length = 281
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 103 KNLLQEYAQKMNYAIPLYQC--RKDEASGKVQFSCTVEIGDIRYIG-GAAKTKKEAEIKA 159
K+ LQE++Q +P Y+C R + ++ C V + D R IG G +++ AE +A
Sbjct: 189 KSALQEWSQARGLGLPRYECAERSKQHGDPQRYVCQVHLDD-RPIGEGWGGSRRNAEQEA 247
Query: 160 ARTALLAIQSSASELSGNSAGNTQLTVL 187
AR +L A+ SA++ NS+ Q +L
Sbjct: 248 ARRSLQALTQSAND---NSSRTEQKAML 272
>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 238
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ+ G+ TP Y I ++GP H P F V+V + G N+++A+ AA
Sbjct: 166 KTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAVVVQGLESAEARG-PNKRSAQMQAA 224
Query: 76 EVALV 80
LV
Sbjct: 225 RSILV 229
>gi|355576174|ref|ZP_09045547.1| ribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354817390|gb|EHF01900.1| ribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 238
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KSRLQE Q+ P Y+ E GP+H P F S V+VD VR G ++K +E +AA
Sbjct: 162 KSRLQEVTQRDLRCAPEYKLAGERGPAHSPTFTSVVLVDGVRMGRGEG-SSKKESESAAA 220
Query: 76 EVALVELAKL 85
AL + +L
Sbjct: 221 LDALQRMGQL 230
>gi|307178016|gb|EFN66877.1| Protein DGCR8 [Camponotus floridanus]
Length = 643
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 356 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 412
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG+S+G+T
Sbjct: 413 KKQAKANAARKTLEILIPQMKDKISGDSSGDT 444
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQE QK P YET++E GP HE F + + V G ++K AEQ A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMRGIGRG-RSKKEAEQMA 225
Query: 75 AEVALVELA 83
A+ AL +LA
Sbjct: 226 AKEALTQLA 234
>gi|397670033|ref|YP_006511568.1| ribonuclease III [Propionibacterium propionicum F0230a]
gi|395142645|gb|AFN46752.1| ribonuclease III [Propionibacterium propionicum F0230a]
Length = 213
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV 53
+K+ LQEY +G+ P YE + EGP H+ F +T +V
Sbjct: 144 YKTALQEYCAHSGLEPPRYEIVGEGPDHQRIFTATAMV 181
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQEYA G P YE + + GPSH P FR V V + L G ++ AEQ+AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEGLAG--TKREAEQNAA 213
Query: 76 EVALVEL 82
L +L
Sbjct: 214 RDLLEQL 220
>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
Length = 226
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 157 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 216
Query: 76 EVALVEL 82
E LV+L
Sbjct: 217 EQVLVKL 223
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE Q+ GI Y ++E GP+H F S V ++ G ++K
Sbjct: 168 FSHVMDFKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGK-SKK 226
Query: 69 AAEQSAAEVALVELAKLGK 87
AEQ AA++AL +L +GK
Sbjct: 227 EAEQHAAQMALQKLKTIGK 245
>gi|395846101|ref|XP_003795753.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Otolemur garnettii]
Length = 570
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
F L +Y Q+ + E K GP+H F VI+D+ + G K ++AA
Sbjct: 14 FMEELNKYRQRENVVLEYREVTKSGPAHNLRFTFQVIIDEREFPEAEG--KTKKEAKNAA 71
Query: 76 EVALVELAKLGKVNECISQPIHET---------GLCKNLLQEYAQKMNYAIPLYQCRKDE 126
VE+ L K N+ +S P+ T G L+ AQK + QC E
Sbjct: 72 AKLAVEI--LNKENKGVS-PLSLTTTDTSEGSIGNYIGLVNRLAQKKKLTVNYEQC---E 125
Query: 127 ASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
+ +F +IG Y G + TK+EA+ AA+ A L I S
Sbjct: 126 SGDPTRFHYKCKIGQKEYGIGKSSTKQEAKQLAAKLAYLQINPEGS 171
>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 243
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E LV+L
Sbjct: 234 EQVLVKL 240
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE +GP H+ F +TVIV S G +K AEQ AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTG-RTKKEAEQKAA 272
Query: 76 EVALVELA 83
A L+
Sbjct: 273 GAAWRHLS 280
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ +KS+LQE Q+ G T Y ++E GP+H F S V ++ V + G ++K
Sbjct: 169 FSHVMDYKSQLQELVQRDGAGTIEYRILQEKGPAHNREFVSLVTLNKVELGTGTG-RSKK 227
Query: 69 AAEQSAAEVALVEL 82
AEQ AA++AL +L
Sbjct: 228 EAEQHAAQMALEKL 241
>gi|336233266|ref|YP_004590012.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
gi|335345207|gb|AEH39753.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
Length = 226
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
K+RLQEY Q P P+Y K G +H+ F+ ++ + +D L G +R+ AEQ+A
Sbjct: 157 KTRLQEYLQAKHFPLPLYNIGKIYGEAHKQIFKINCKINGI-HDILIGIGSSRRKAEQNA 215
Query: 75 AEVALVEL 82
A+ AL+++
Sbjct: 216 AQNALIKM 223
>gi|402890576|ref|XP_003908560.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Papio anubis]
Length = 260
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y QK GI E GP H+ F V+ D + G ++ +++
Sbjct: 9 FFMEELNKYRQKQGITLSYQELPNTGPPHDRRFTFRVVTDRREFPEAEG----RSKKEAK 64
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A + + L K +E +S P T G ++ AQK + QC
Sbjct: 65 NAAAKLAVDILNKESEAVS-PFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVNYEQCTS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
G F +IGD Y G +K+EA+ AA+ ALL I S
Sbjct: 124 G-VHGPEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETS 170
>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
gi|123492713|sp|Q2GFE4.1|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
Length = 226
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE Q +P P Y TI K GP H P F V + + G N+K AEQ AA
Sbjct: 156 KTILQELVQGKRLPAPAYHTIDKSGPDHNPTFTVEVRIPSYQAIQATG-HNKKLAEQKAA 214
Query: 76 EVAL 79
+ L
Sbjct: 215 SLML 218
>gi|407775064|ref|ZP_11122360.1| RNAse III [Thalassospira profundimaris WP0211]
gi|407282012|gb|EKF07572.1| RNAse III [Thalassospira profundimaris WP0211]
Length = 227
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQE+ Q G P P YE + +EGP+H P F + D S G R+ AEQ AA
Sbjct: 159 KTQLQEWLQGRGKPLPKYEMVGREGPAHAPLFTIELTTGDGDSVSAEGKSKRE-AEQLAA 217
Query: 76 EVALVELA 83
++ L +L+
Sbjct: 218 KLMLDKLS 225
>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
Length = 229
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
K +LQE QK P Y+ + + + F V + +Y G K+KKEAEI AA+
Sbjct: 162 KTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGVGKSKKEAEINAAKK 221
Query: 163 ALLAIQS 169
AL I++
Sbjct: 222 ALEEIEN 228
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQE A + G+P PVY+ GP H F + V V D + G ++K AE +AA
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEG-SSKKQAEMTAAL 226
Query: 77 VALVEL 82
A L
Sbjct: 227 EAWTRL 232
>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
Length = 239
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDD 55
FKSRLQEY QKA PVY + EGP H+ F+ + + D
Sbjct: 161 FKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPD 201
>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
Length = 259
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFN---RKAAEQ 72
KS LQE+A +P P Y + + GP H P FR V V+ + PG + ++ AEQ
Sbjct: 180 KSALQEWAMGRSLPIPTYAVVERTGPDHAPRFRIAVQVEGLE----PGLGDGTSKRIAEQ 235
Query: 73 SAAEVALVELAKLG 86
+AA AL+E +G
Sbjct: 236 AAAR-ALMEREGIG 248
>gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
Length = 226
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFR 48
K+ LQE+AQ G+P P Y E +EGP H P FR
Sbjct: 159 KTALQEWAQGRGLPPPSYIEVAREGPDHAPEFR 191
>gi|422390078|ref|ZP_16470174.1| ribonuclease III [Propionibacterium acnes HL103PA1]
gi|422463027|ref|ZP_16539646.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|422467304|ref|ZP_16543858.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|422469381|ref|ZP_16545906.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|422565430|ref|ZP_16641079.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|422575316|ref|ZP_16650857.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
Length = 265
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD Y + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 228
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 2 PTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDS 60
P E + +SN +KS LQE Q G YE I+ EGP H+ F + V VD
Sbjct: 145 PIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIREEGPDHDKMFFAEVKVDGKPVGR 204
Query: 61 LPGFFNRKAAEQSAAEVALVEL 82
G ++K AEQ AA+ AL EL
Sbjct: 205 GSG-RSKKDAEQKAAQQALSEL 225
>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
gi|386069698|ref|YP_005984594.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
gi|353454065|gb|AER04584.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
Length = 246
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD Y + G N+K AEQ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTG-HNKKEAEQGAA 231
Query: 76 EVALVEL 82
A+ L
Sbjct: 232 RRAVSAL 238
>gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
Length = 228
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y+ + +EGP HEP F V V+ V G +++ AEQ+AA
Sbjct: 161 KTGLQEWAQGRGKPLPHYQVLGQEGPPHEPIFLIEVSVEGVGSAVGRG-ASKRVAEQAAA 219
Query: 76 EVAL 79
+ L
Sbjct: 220 GLLL 223
>gi|365904207|ref|ZP_09441966.1| ribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 229
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+ LQE QK+G Y + +EGP H+ F +IVD+ G +++K AEQ A
Sbjct: 163 FKTHLQEKLQKSGEVDIDYHVVDEEGPDHDKKFEIELIVDNKILSKGYG-YSKKHAEQMA 221
Query: 75 AEVALVEL 82
A+ AL EL
Sbjct: 222 AKRALEEL 229
>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
Length = 917
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYD--SLPGFFNRKAAEQSAA 75
S L E++Q++G P +T +EGPSH+P F V V + + S P ++KAA Q AA
Sbjct: 746 SVLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAP---SKKAARQLAA 802
Query: 76 EVALVELAKLGKVN 89
E A+ EL G ++
Sbjct: 803 EEAVKELMGDGLLH 816
>gi|357632354|ref|ZP_09130232.1| ribonuclease III [Desulfovibrio sp. FW1012B]
gi|357580908|gb|EHJ46241.1| ribonuclease III [Desulfovibrio sp. FW1012B]
Length = 239
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDD 55
FKSRLQEY QKA PVY + EGP H+ F+ + + D
Sbjct: 161 FKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPD 201
>gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
Length = 444
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ L +++ +P P YET+K+G + F S V V D RY S +K AEQ+AA
Sbjct: 374 KTILLNWSRTEYLPQPTYETVKQGSDTK--FNSVVTVGDKRYASSFWHKAKKLAEQAAAS 431
Query: 77 VALVEL 82
V L L
Sbjct: 432 VCLRTL 437
>gi|407477596|ref|YP_006791473.1| ribonuclease 3 [Exiguobacterium antarcticum B7]
gi|407061675|gb|AFS70865.1| Ribonuclease 3 [Exiguobacterium antarcticum B7]
Length = 269
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS+LQE Q+ G+ YE I+E GP+H F S V V D + + + ++K AEQ A
Sbjct: 199 FKSQLQEAIQRVGLGQIEYEIIEERGPAHSREFISRVHVSD-KLEGIGTGRSKKEAEQQA 257
Query: 75 AEVALVEL 82
A+ AL+ L
Sbjct: 258 AKQALLVL 265
>gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1]
Length = 229
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDV 56
K+ LQE+AQ G P PVY + ++GP H+P F +V V+ V
Sbjct: 162 KTALQEWAQGLGKPLPVYTVVGQDGPPHDPTFVVSVTVEGV 202
>gi|344923148|ref|ZP_08776609.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 212
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+ Q G+ P YE + + GP+H P F + VDD + +RK AEQ AA
Sbjct: 144 KSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARGK--SRKLAEQEAA 201
Query: 76 EVAL 79
+ L
Sbjct: 202 KQML 205
>gi|384515974|ref|YP_005711066.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|397654323|ref|YP_006495006.1| ribonuclease III [Corynebacterium ulcerans 0102]
gi|334697175|gb|AEG81972.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|393403279|dbj|BAM27771.1| ribonuclease III [Corynebacterium ulcerans 0102]
Length = 249
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A + +P PVYE GP H F + V V G N+K AEQ+AA
Sbjct: 177 WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVGTTALGEGVG-PNKKLAEQAAA 235
Query: 76 EVALVEL 82
A+V L
Sbjct: 236 HKAVVFL 242
>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
Length = 236
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVD 54
K+ LQE+A G P P YET+ +EGP H P FR V V+
Sbjct: 166 KTALQEWALGRGRPLPAYETLSREGPDHAPVFRVRVRVE 204
>gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614]
gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614]
Length = 236
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ +PTP Y+ T ++GP H P F +V V + G +++ AEQ+AA
Sbjct: 166 KTTLQEWAQSKSLPTPRYDVTSRDGPDHAPNFTVSVTVQGLPPGEGKG-GSKRIAEQNAA 224
Query: 76 EVAL 79
E L
Sbjct: 225 EAVL 228
>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 211
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+ Q G+ P YE + + GP+H P F + VDD + +RK AEQ AA
Sbjct: 144 KSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARGK--SRKLAEQEAA 201
Query: 76 EVAL 79
+ L
Sbjct: 202 KQML 205
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 13 CYVFKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAE 71
C +K+ LQE Q TP YE I GP H F V +D S G ++KAA+
Sbjct: 152 CKDYKTALQELTQATHGVTPDYEMIGSSGPDHRKEFEVAVKLDGETIASAKGR-SKKAAQ 210
Query: 72 QSAAEVALVELAK 84
Q AAE+AL +L K
Sbjct: 211 QKAAEIALQKLRK 223
>gi|410943088|ref|ZP_11374829.1| ribonuclease III [Gluconobacter frateurii NBRC 101659]
Length = 244
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQEY G+P P YE + EGPSH P FR V
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAV 209
>gi|357492169|ref|XP_003616373.1| hypothetical protein MTR_5g079480 [Medicago truncatula]
gi|355517708|gb|AES99331.1| hypothetical protein MTR_5g079480 [Medicago truncatula]
Length = 297
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S C++F R + + P + + G P +RSTV+VD + + S FF++K
Sbjct: 125 SGCFMFDFR-------SNMKHPKFLSCNLGSIQAPSYRSTVMVDGLIFISQLTFFHQKVV 177
Query: 71 EQSAAEVALVELAKLGKVNE 90
+Q A +AL L K K+N+
Sbjct: 178 DQEVARIALEYLTK--KIND 195
>gi|422939905|ref|ZP_16967273.1| ribonuclease III [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890121|gb|EGQ79298.1| ribonuclease III [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 234
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVR 57
FKS LQEYAQK P Y+ I E GP H F VIV + R
Sbjct: 161 FKSILQEYAQKEFRTVPTYKLIAERGPDHMKEFEIQVIVGNYR 203
>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
Length = 255
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVR 57
KS LQE+AQ G P P YE I + GP H P F V V+ VR
Sbjct: 186 KSALQEWAQGDGRPAPNYENIDRTGPDHAPVFTVEVRVEGVR 227
>gi|414341280|ref|YP_006982801.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|411026615|gb|AFV99869.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|453330555|dbj|GAC87301.1| ribonuclease III [Gluconobacter thailandicus NBRC 3255]
Length = 244
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQEY G+P P YE + EGPSH P FR V
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAV 209
>gi|337291062|ref|YP_004630083.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
gi|334699368|gb|AEG84164.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
Length = 249
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A + +P PVYE GP H F + V V G N+K AEQ+AA
Sbjct: 177 WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVGTTALGEGIG-PNKKLAEQAAA 235
Query: 76 EVALVEL 82
A+V L
Sbjct: 236 HKAVVFL 242
>gi|403386857|ref|ZP_10928914.1| ribonuclease III [Clostridium sp. JC122]
Length = 233
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQE QK G + VY +K EGP H F V+V+ V + G+ ++A + +A
Sbjct: 162 YKTKLQETLQKNGEVSIVYNLVKFEGPPHRRQFFVEVLVNGVSRGNGIGYSKKEAEQNAA 221
Query: 75 AEVAL 79
EV L
Sbjct: 222 KEVVL 226
>gi|374292002|ref|YP_005039037.1| RNase III [Azospirillum lipoferum 4B]
gi|357423941|emb|CBS86804.1| RNase III [Azospirillum lipoferum 4B]
Length = 261
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G P P YE I + GP+HEP F V V
Sbjct: 190 KTTLQEWAQGRGKPLPRYELIERSGPAHEPLFVVAVHV 227
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+AQ G+P P Y ++ GP H P FR V V + G +++ AEQ+AA
Sbjct: 160 KSALQEWAQGQGLPPPTYSVAEQTGPDHAPKFRVLVKVKGAEGEFGSG-TSKRVAEQAAA 218
Query: 76 EVALV 80
L+
Sbjct: 219 RSLLM 223
>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 229
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
K +LQE QK P Y+ + + + F V + +Y G K+KKEAEI AA+
Sbjct: 162 KTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKK 221
Query: 163 ALLAIQS 169
AL I++
Sbjct: 222 ALEEIEN 228
>gi|404423975|ref|ZP_11005590.1| ribonuclease III [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
gi|403652541|gb|EJZ07576.1| ribonuclease III [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
Length = 233
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H+ F +TV+V DV Y
Sbjct: 165 WKSSLQELTASRGLGAPSYVVTSTGPDHDKEFSATVVVADVEY 207
>gi|294507352|ref|YP_003571410.1| ribonuclease III [Salinibacter ruber M8]
gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8]
Length = 243
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDS-LPGFFNRKAAEQS 73
+KS+L E+ Q G P P Y ++E GPSH+ F V V D Y+ G +++ AEQ
Sbjct: 170 YKSQLLEHLQALGRPQPTYHVVEEKGPSHDKTFTVEVRVGDADYERGTAG--SKQDAEQQ 227
Query: 74 AAEVALVELA 83
AA L E+A
Sbjct: 228 AARRTLDEMA 237
>gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626]
gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626]
Length = 243
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVD 54
KSRLQE Q G TP YE + E GP+H P F S V VD
Sbjct: 162 KSRLQEAVQANGKSTPEYELVSESGPAHTPTFISVVSVD 200
>gi|407782700|ref|ZP_11129910.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
gi|407205358|gb|EKE75331.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
Length = 233
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G+P P Y + +EGP+H+P F V V
Sbjct: 162 KTGLQEWAQGRGLPLPSYREVGREGPAHQPVFTVEVTV 199
>gi|406993215|gb|EKE12406.1| hypothetical protein ACD_13C00220G0002 [uncultured bacterium]
Length = 223
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKSRLQE Q G P Y ++E GP H F V+V+ V + G ++ +AEQ A
Sbjct: 155 FKSRLQETVQAKGFSAPKYHVVEESGPDHNKKFIIEVLVNGVSWGKGEG-KSKSSAEQEA 213
Query: 75 AEVAL 79
A L
Sbjct: 214 ARQVL 218
>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
Length = 229
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAART 162
K +LQE QK P Y+ + + + F V + +Y G K+KKEAEI AA+
Sbjct: 162 KTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKK 221
Query: 163 ALLAIQS 169
AL I++
Sbjct: 222 ALEEIEN 228
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQS 73
+KS LQE Q PVY +K GP H+ +F V V+ + PG N+KAAEQ
Sbjct: 205 YKSLLQELTQGLYRNYPVYRVLKRSGPEHDRFFWIEVSVEGKTFG--PGMGRNKKAAEQE 262
Query: 74 AAEVALVEL 82
AA +A E+
Sbjct: 263 AARIAYEEI 271
>gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855]
gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855]
Length = 248
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDS-LPGFFNRKAAEQS 73
+KS+L E+ Q G P P Y ++E GPSH+ F V V D Y+ G +++ AEQ
Sbjct: 175 YKSQLLEHLQALGRPQPTYHVVEEKGPSHDKTFTVEVRVGDAAYERGTAG--SKQDAEQQ 232
Query: 74 AAEVALVELA 83
AA L E+A
Sbjct: 233 AARRTLDEMA 242
>gi|357030876|ref|ZP_09092820.1| ribonuclease 3 [Gluconobacter morbifer G707]
gi|356415570|gb|EHH69213.1| ribonuclease 3 [Gluconobacter morbifer G707]
Length = 236
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDD 55
K+ LQEY G+P P YE + EGPSH P FR V D
Sbjct: 166 KTLLQEYLLSKGLPLPQYELLSSEGPSHAPVFRVGVSAQD 205
>gi|452966440|gb|EME71451.1| dsRNA-specific ribonuclease [Magnetospirillum sp. SO-1]
Length = 229
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P+Y + +EGP HEP F V V+ V G +++ AEQ+AA
Sbjct: 162 KTALQEWAQGRGLQLPLYRVLGQEGPPHEPIFLMEVSVEGVGSAVGRG-ASKRVAEQAAA 220
>gi|399889410|ref|ZP_10775287.1| ribonuclease III [Clostridium arbusti SL206]
Length = 233
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQE QK G Y +K EGP H F +VI + + GF ++K AEQ A
Sbjct: 162 YKTKLQEVLQKNGDADIKYNLLKFEGPPHRRRFYISVIFNGMLKGEGSGF-SKKEAEQDA 220
Query: 75 AEVAL 79
A++AL
Sbjct: 221 AQIAL 225
>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
Length = 225
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY+ K PVY+ I GPSH+P FR +V ++ + G ++K AE +AA
Sbjct: 157 KTKLQEYSLKLYKKLPVYKYISNSGPSHKPNFRVSVSIEQSKSFVATG-TSKKNAETNAA 215
Query: 76 EVALVELAKL 85
+ L+E K+
Sbjct: 216 K-KLIEYLKI 224
>gi|408406191|gb|ADC93281.1| double-stranded RNA-specific adenosine deaminase [Ctenopharyngodon
idella]
Length = 1392
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 45/192 (23%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYD--SLPGFFNRKAAEQSAA 75
S L E++Q++G +T +EGP H+P F V V D + S P ++KAA+Q AA
Sbjct: 758 SVLMEHSQRSGNAIQFIKTGQEGPPHDPRFMFRVKVGDRLFQEASAP---SKKAAKQLAA 814
Query: 76 EVALVELAKLGKVN---------------------ECISQP---------IHETG---LC 102
E A+ EL G ++ C S P HE G L
Sbjct: 815 EEAVKELMGDGLLHLNKPPGTFHSLGDNESQPAIPACPSLPPLTASELQAAHEAGVGDLI 874
Query: 103 KNL-------LQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+L L EYA+ +A + + S + +F+ ++G + A KK+
Sbjct: 875 NHLNNNAVSGLLEYARARGFAAEIRLVGQSGLSHEPKFTYQAKLGGRWFPAVCASNKKQG 934
Query: 156 EIKAARTALLAI 167
+ +AA AL +
Sbjct: 935 KQEAADAALRVL 946
>gi|441430520|gb|AGC11944.1| RNA-specific adenosine deaminase [Ctenopharyngodon idella]
Length = 1392
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 45/192 (23%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYD--SLPGFFNRKAAEQSAA 75
S L E++Q++G +T +EGP H+P F V V D + S P ++KAA+Q AA
Sbjct: 758 SVLMEHSQRSGNAIQFIKTGQEGPPHDPRFMFRVKVGDRLFQEASAP---SKKAAKQLAA 814
Query: 76 EVALVELAKLGKVN---------------------ECISQP---------IHETG---LC 102
E A+ EL G ++ C S P HE G L
Sbjct: 815 EEAVKELMGDGLLHLNKPPGTFHSLGDNESQPAIPACPSLPPLTASELQAAHEAGVGDLI 874
Query: 103 KNL-------LQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEA 155
+L L EYA+ +A + + S + +F+ ++G + A KK+
Sbjct: 875 NHLNNNAVSGLLEYARARGFAAEIRLVGQSGLSHEPKFTYQAKLGGRWFPAVCASNKKQG 934
Query: 156 EIKAARTALLAI 167
+ +AA AL +
Sbjct: 935 KQEAADAALRVL 946
>gi|384449689|ref|YP_005662291.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
Length = 237
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
KNLLQ++ QK +P+YQ +A G V + V + + G A +KKEAE AA+
Sbjct: 162 KNLLQQFTQKQFRVLPVYQSTAVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQ 221
Query: 162 TAL 164
AL
Sbjct: 222 QAL 224
>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 226
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+RLQE+ Q G P PVY T+ E G +HE F V S+PG +R+
Sbjct: 155 KTRLQEFLQGQGRPVPVYTTVAEKGQAHERRF--------VARCSVPGAEATEAEDGSRR 206
Query: 69 AAEQSAAEVALVEL 82
AEQ AA + L +L
Sbjct: 207 KAEQQAAALMLAQL 220
>gi|380302783|ref|ZP_09852476.1| RNAse III [Brachybacterium squillarum M-6-3]
Length = 250
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
+ Y FKSRLQE A ++G TP Y + G H+ F +TV V V S G ++K
Sbjct: 168 LETSYDFKSRLQEIAAESG-ATPAYRLSESGLEHDKTFTATVTVAGVVTASGEG-HSKKD 225
Query: 70 AEQSAAEVAL 79
AE +AA+ A+
Sbjct: 226 AELAAAQTAV 235
>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
Length = 241
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE Q+ P Y+ + GP+HEP F + V+VD VR G ++K AE SAA
Sbjct: 162 KSILQERVQEDHGEPPCYKLVGMSGPAHEPTFTAVVLVDGVRCGRGTG-SSKKEAEASAA 220
Query: 76 EVAL 79
AL
Sbjct: 221 RDAL 224
>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
Length = 242
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+A + +P+P YE + + GP H P F+ + ++ YD + + + AA
Sbjct: 174 KSHLQEWAAQKKLPSPKYEIVERSGPDHAPIFKVALTLEG--YDPVVASGKSRQEAEKAA 231
Query: 76 EVALVELAKL 85
++ +E A L
Sbjct: 232 ALSFIEHAGL 241
>gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
Length = 237
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
KNLLQ++ QK +P+YQ +A G V + V + + G A +KKEAE AA+
Sbjct: 162 KNLLQQFTQKQFRVLPVYQSTAVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQ 221
Query: 162 TAL 164
AL
Sbjct: 222 QAL 224
>gi|374854311|dbj|BAL57196.1| ribonuclease III [uncultured prokaryote]
Length = 239
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KSRLQE+AQ + TP Y TI GP H P F V + D Y G N++ A AA
Sbjct: 166 KSRLQEWAQAQRLGTPRYVTIAAHGPEHAPLFEVEVYIGDRAYGRGAG-PNKQIAALKAA 224
Query: 76 EVAL 79
+ AL
Sbjct: 225 QDAL 228
>gi|395203526|ref|ZP_10394717.1| ribonuclease III [Propionibacterium humerusii P08]
gi|422439793|ref|ZP_16516613.1| ribonuclease III [Propionibacterium acnes HL037PA3]
gi|422471877|ref|ZP_16548368.1| ribonuclease III [Propionibacterium acnes HL037PA2]
gi|422573632|ref|ZP_16649193.1| ribonuclease III [Propionibacterium acnes HL044PA1]
gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2]
gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1]
gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3]
gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium humerusii P08]
Length = 259
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 186 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 244
Query: 76 EVALVEL 82
A+ L
Sbjct: 245 RRAVTAL 251
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ PVY+ + + GP H+ F V++ Y G ++K AEQ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSG-RSKKEAEQKA 223
Query: 75 AEVALVELAK 84
A+ AL LA+
Sbjct: 224 AKDALSRLAR 233
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 85 LGKVNECISQPIHETGL--CKNLLQEYAQKMNYAIPLYQCRKDEA-SGKVQFSCTVEIGD 141
+G I Q + E + K LQEY Q+ +P+YQ + +F V I
Sbjct: 146 IGHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG 205
Query: 142 IRYIGGAAKTKKEAEIKAARTAL 164
Y G+ ++KKEAE KAA+ AL
Sbjct: 206 KIYGEGSGRSKKEAEQKAAKDAL 228
>gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029]
gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138]
gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39]
gi|7531191|sp|Q9Z9C7.1|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029]
gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39]
gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138]
Length = 237
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
KNLLQ++ QK +P+YQ +A G V + V + + G A +KKEAE AA+
Sbjct: 162 KNLLQQFTQKQFRVLPVYQSTAVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQ 221
Query: 162 TAL 164
AL
Sbjct: 222 QAL 224
>gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105]
gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105]
Length = 226
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEG-PSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE Q + P+Y + EG S P F V+D+ + +R+ AEQ AA
Sbjct: 145 KTRLQELLQGKRMKLPMYRVLVEGGTSASPEFSVECAVEDLEITKVGQGHSRRVAEQHAA 204
Query: 76 EVALVEL 82
+ L+EL
Sbjct: 205 QAVLIEL 211
>gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn]
Length = 228
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
K+ LQE+AQ G+ P Y + K GP H P F TV V +++L N+K AEQ A
Sbjct: 158 KTILQEWAQAQGLLAPSYHIVNKSGPDHNPTF--TVEVRMNSHETLQATGNNKKIAEQKA 215
Query: 75 AEVALVEL 82
A + L ++
Sbjct: 216 ASLMLAKI 223
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY Q+ G VY + E GP H+ F V ++ Y S G ++K AEQ+A
Sbjct: 176 YKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAYGSGTG-KSKKEAEQNA 234
Query: 75 AEVAL 79
A+V L
Sbjct: 235 AQVTL 239
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE Q+ G T Y+ ++E GP+H F STV ++ + G ++K
Sbjct: 169 FSHVMDFKSQLQELVQRDGAGTIEYKILQEKGPAHNREFVSTVSLNGRELGTGTG-RSKK 227
Query: 69 AAEQSAAEVAL 79
AEQ AA++AL
Sbjct: 228 EAEQHAAQMAL 238
>gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
Length = 228
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVD 54
KS LQE+AQ +P PVY+ + +EG H P F I+D
Sbjct: 159 KSSLQEWAQARKMPPPVYKLLRREGADHAPMFTIAAILD 197
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I + GP H P F +V V+ + G +R+AAE++AA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQG-TSRRAAEKAAA 219
>gi|374262718|ref|ZP_09621281.1| ribonuclease III [Legionella drancourtii LLAP12]
gi|363536942|gb|EHL30373.1| ribonuclease III [Legionella drancourtii LLAP12]
Length = 228
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q I P Y IK EG HE F T V+ + + NR+ AEQ AA
Sbjct: 156 KTRLQEYLQAEKIALPEYALIKVEGDEHEQLFYITCTVEAEKLVTQGEGSNRRKAEQLAA 215
Query: 76 EVALVEL 82
+ L +L
Sbjct: 216 KAMLEQL 222
>gi|354990646|gb|AER45377.1| double-stranded RNA activated kinase [Takifugu rubripes rubripes]
Length = 522
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+ +RL EYAQ++ + + +GP H FR ++DD Y G ++A +++A
Sbjct: 4 YVARLNEYAQESRLSLQYQDVGCDGPDHLKTFRVRAVIDDQAYPEGLGKNKKEAKKKAAE 63
Query: 76 EV--ALVELAK--------LGKVNECISQ-PIHETGLCKNLLQEYAQKMNYAIPLYQCRK 124
AL++ + G+ SQ PI T L EY QK ++ L + +
Sbjct: 64 NAWRALMQEHRDSETQTENAGQSPSTPSQAPITRTNFVA-WLNEYGQKNRVSVKLVESTR 122
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
G + C +GD Y KTK+EA+ +AAR
Sbjct: 123 PGLRG-AELCCRFVVGDQEYPDAVGKTKREAKEEAAR 158
>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 252
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A G TP YE + + GP H+P F V + DV G +R+ AEQ AA
Sbjct: 180 KTALQEWAHTRGPVTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQG-RSRRIAEQEAA 238
Query: 76 EVALV 80
L+
Sbjct: 239 TAVLI 243
>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
Length = 221
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQS 73
+KS LQE QK P YE I+ GP HE F TV+V ++ + G N+K AEQ
Sbjct: 153 YKSTLQEIVQKKYKSVPEYEVIQTVGPEHEKIF--TVVVSSLKKELGRGRGKNKKLAEQD 210
Query: 74 AAEVALVELAK 84
AA+ AL L K
Sbjct: 211 AAKNALENLKK 221
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+ LQE P Y +FS TV IG+ Y G +TKKEAE+KAA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 162 TA 163
+A
Sbjct: 222 SA 223
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS LQE G+ P Y GP H+ F +TV++ + Y G ++A ++AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
>gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 234
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P+YE I E GP H F V+V
Sbjct: 161 FKSILQEYVQKNFRTVPIYELISEKGPDHMKEFEIQVVV 199
>gi|441432182|ref|YP_007354224.1| DSRM[cd00048], Double-stranded RNA binding motif-containing
protein [Acanthamoeba polyphaga moumouvirus]
gi|440383262|gb|AGC01788.1| DSRM[cd00048], Double-stranded RNA binding motif-containing
protein [Acanthamoeba polyphaga moumouvirus]
Length = 228
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRS--TVIVDDVRYDSLPG--FFNRKAAEQ 72
K++LQEY QK +P P+Y + G +HE + S TVI+++ Y +L G ++N K Q
Sbjct: 4 KNKLQEYFQKNKLPLPIYSSTSIGAAHEKKWTSNITVIINNKEY-TLIGDKYYNSKTESQ 62
Query: 73 -SAAEVALVELAKLGKVNECISQP 95
AE L + K N+ + P
Sbjct: 63 LKVAEQMLDHINNQNKSNKIENLP 86
>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 253
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ +KS+LQE Q+ G T Y ++E GP+H F S V ++ V + G ++K
Sbjct: 170 FSHVMDYKSQLQELVQRDGAGTIEYRILQEKGPAHNREFVSRVSLNKVELGTGIG-RSKK 228
Query: 69 AAEQSAAEVALVELAKLGKVN 89
AEQ AA++AL +L +VN
Sbjct: 229 EAEQHAAQMALEKLKAHLEVN 249
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVD 54
KSRLQE QK PVYE E GP+H P F S V VD
Sbjct: 162 KSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVD 200
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+ LQE P Y +FS TV IG+ Y G +TKKEAE+KAA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 162 TA 163
+A
Sbjct: 222 SA 223
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS LQE G+ P Y GP H+ F +TV++ + Y G ++A ++AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
>gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
Length = 258
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P Y +EGP H P F V+V D G +++AAEQ AA
Sbjct: 182 KTALQEWAQGLGLHLPTYRLARREGPPHNPVFWVEVLVGDHVGQGQAG--SKRAAEQLAA 239
Query: 76 E 76
+
Sbjct: 240 Q 240
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q G P YE I +EGP H F V +++ S G ++K AEQ A
Sbjct: 167 YKTMLQEVIQDMGNFRPEYEVIDEEGPDHNKTFIVAVKMNEESLGSGQGS-SKKEAEQEA 225
Query: 75 AEVALVELAKL 85
A+VAL +L KL
Sbjct: 226 AKVALDKLDKL 236
>gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum
magnetotacticum MS-1]
Length = 230
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDV 56
K+ LQE+AQ G P P Y+ + +EGP HEP F V V+ V
Sbjct: 161 KTGLQEWAQGRGKPLPAYKMLGQEGPPHEPTFLMEVSVEGV 201
>gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta]
gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta]
Length = 473
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K++L +A KAG P YET + FRS D R+ S N+K A
Sbjct: 390 SDNHLPKTQLYVHAGKAGKSPPAYET----QQCDKLFRSICTFDGQRFSSSFWEKNKKQA 445
Query: 71 EQSAAEVALVELAKL 85
EQ AA VAL+ L +L
Sbjct: 446 EQGAALVALLHLGQL 460
>gi|350567556|ref|ZP_08935966.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
gi|348662627|gb|EGY79284.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
Length = 259
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P Y+ + GP H + + VD + + G N+K AEQ AA
Sbjct: 187 WKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGKLHAAYTG-HNKKEAEQGAA 245
Query: 76 EVALVEL 82
++A+ L
Sbjct: 246 QLAVAAL 252
>gi|429124459|ref|ZP_19184991.1| ribonuclease III [Brachyspira hampsonii 30446]
gi|426279698|gb|EKV56719.1| ribonuclease III [Brachyspira hampsonii 30446]
Length = 251
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 103 KNLLQEYAQKMNYAIPLYQ-CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K + QE QK + P+Y+ C + + F V + D + G K+KKEAE AA+
Sbjct: 164 KTIFQELIQKKHKTSPIYKSCEFHDENNNDMFKAEVYVNDKTFALGIGKSKKEAETNAAK 223
Query: 162 TALLAIQSSASELSGNSAG-NTQLT 185
AL I+ S + N N QLT
Sbjct: 224 KALDKIEYVRSAIKRNRQNKNYQLT 248
>gi|311252821|ref|XP_003125284.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Sus scrofa]
Length = 242
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
SG S C+ + L +Y QK + E K GP+H F V++D+ + G +
Sbjct: 3 SGRSPCFYIE-ELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKK 61
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIH---ETGLCKNL---LQEYAQKMNYAIPLYQ 121
+A +A + + K K N S P + L +N + +QK N ++
Sbjct: 62 EAKNAAAKLAFEI-INKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVNYEP 120
Query: 122 CRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
C E G +F +IG Y G TK+EA+ AA+ A +QS
Sbjct: 121 CEPGE-DGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQS 167
>gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029]
gi|221641174|ref|YP_002527436.1| ribonuclease 3 [Rhodobacter sphaeroides KD131]
gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
gi|429205942|ref|ZP_19197211.1| Ribonuclease III [Rhodobacter sp. AKP1]
gi|90101641|sp|Q3J5W1.1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043337|sp|A3PGF8.1|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807895|sp|B9KSA7.1|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029]
gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
gi|428191078|gb|EKX59621.1| Ribonuclease III [Rhodobacter sp. AKP1]
Length = 229
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
+G +K+ LQE G+ P Y GP H F + V+V RY G ++
Sbjct: 160 AGRGAALDWKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEG-RSK 218
Query: 68 KAAEQSAAEVALVEL 82
K AEQ AAE A EL
Sbjct: 219 KEAEQRAAESAWREL 233
>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
Length = 260
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LL E+AQ + P Y+ +E + F+ IG+ R G A +KK+AE +AAR
Sbjct: 184 KSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAAR 243
Query: 162 TALLAIQSS 170
AL +Q++
Sbjct: 244 EALARLQAT 252
>gi|392378865|ref|YP_004986025.1| RNase III [Azospirillum brasilense Sp245]
gi|356880347|emb|CCD01296.1| RNase III [Azospirillum brasilense Sp245]
Length = 249
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ P P YE I++ GP+HEP FR V + + + G +++ AE+ AA
Sbjct: 178 KTALQEWAQGNKRPLPTYELIEQSGPAHEPVFRIAVRLKGMEPVTATG-PSKRVAERKAA 236
Query: 76 EVALVEL 82
L +L
Sbjct: 237 SALLRQL 243
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LL E+AQ + P Y+ +E + F+ IG+ R G A +KK+AE +AAR
Sbjct: 184 KSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAAR 243
Query: 162 TALLAIQSS 170
AL +Q++
Sbjct: 244 EALARLQTA 252
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G PVYE GP H+ F +TV++ D G ++K AEQ AA
Sbjct: 173 WKTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISDKPLGVGVG-RSKKEAEQKAA 231
Query: 76 EVA 78
A
Sbjct: 232 SSA 234
>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
Length = 229
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q + P YE I EG +H F V+ + +L +R+ AEQ AA
Sbjct: 156 KTRLQEFLQSRQVALPRYEVISVEGEAHAQTFTVECHVEMLDEHTLGIGSSRRHAEQQAA 215
Query: 76 EVALVELAKLG 86
E AL +L K G
Sbjct: 216 EQALSQLEKGG 226
>gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601]
gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601]
Length = 227
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWF 47
K+ LQE+AQ G+P P Y ET + GP H P F
Sbjct: 159 KTSLQEWAQARGMPPPAYVETARSGPDHAPVF 190
>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
Length = 231
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ Q +P P YE I EG +H F T +V G +RK AEQ AA
Sbjct: 157 KTILQEFLQAQKVPLPSYEVINVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAA 216
Query: 76 EVALVELAK 84
+ A+ + K
Sbjct: 217 KEAMATIEK 225
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A +P Y +EGP HE F + V++ + G ++K AEQ AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNG-RSKKEAEQKAA 231
Query: 76 EVALVELAK 84
E A EL +
Sbjct: 232 EQAWKELTR 240
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + GI P YE GP H+ F +TV+V + G ++K AEQ AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVG-RSKKEAEQKAA 232
Query: 76 EVALVELAK 84
A L++
Sbjct: 233 STAWSALSE 241
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++KS LQ Q+ G P Y+ K+G H P F +TV V+ + S + K A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 75 AEVALVELA 83
A++A +
Sbjct: 61 AKLAYDHFS 69
>gi|386746174|ref|YP_006219391.1| ribonuclease III [Helicobacter pylori HUP-B14]
gi|384552423|gb|AFI07371.1| ribonuclease III [Helicobacter pylori HUP-B14]
Length = 239
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P+Y+ +KE GP H F + + D Y + G ++K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYIQDKMYATAKG-KSKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYYALQKL 235
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A P Y+ + GP HE F + ++ + G ++K AEQ AA
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVIGEEVLGEGVG-HSKKEAEQRAA 231
Query: 76 EVALVELAKLGKV 88
EVA EL + +V
Sbjct: 232 EVAWTELDRRAQV 244
>gi|407692463|ref|YP_006817252.1| ribonuclease III [Actinobacillus suis H91-0380]
gi|407388520|gb|AFU19013.1| ribonuclease III [Actinobacillus suis H91-0380]
Length = 222
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q + P YE I +G +H F+ T ++ + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLQLPTYEVIDIKGEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAA 213
Query: 76 EVALVELAK 84
E LV+L K
Sbjct: 214 EQVLVKLNK 222
>gi|448825268|ref|YP_007418199.1| hypothetical protein LBA_00303 [Megavirus lba]
gi|444236453|gb|AGD92223.1| hypothetical protein LBA_00303 [Megavirus lba]
Length = 265
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVI 52
K++LQEY QK +P P+Y + GP H + S+++
Sbjct: 24 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIV 59
>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
Length = 174
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQEY G+P P YE + +GPSH P FR +V
Sbjct: 104 KTLLQEYMLSQGLPLPHYELLSSDGPSHAPVFRVSV 139
>gi|363540236|ref|YP_004894369.1| mg318 gene product [Megavirus chiliensis]
gi|350611401|gb|AEQ32845.1| hypothetical protein [Megavirus chiliensis]
Length = 246
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVI 52
K++LQEY QK +P P+Y + GP H + S+++
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIV 40
>gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025]
gi|189043338|sp|A4WVP5.1|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025]
Length = 229
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPCYEAVDRSGPDHAPIF 190
>gi|425701190|gb|AFX92352.1| hypothetical protein CE11_00322 [Megavirus courdo11]
Length = 246
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVI 52
K++LQEY QK +P P+Y + GP H + S+++
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIV 40
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYD 59
+P +G ++ KS LQE Q AG +P+Y+TI E G H F V ++ +
Sbjct: 146 LPNAQGIIALNRLKDPKSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLA 205
Query: 60 SLPGFFNRKAAEQSAAEVAL 79
S G N++ AEQ AA+ AL
Sbjct: 206 SGTG-KNKQEAEQKAAQKAL 224
>gi|352085714|ref|ZP_08953305.1| ribonuclease III [Rhodanobacter sp. 2APBS1]
gi|351681655|gb|EHA64779.1| ribonuclease III [Rhodanobacter sp. 2APBS1]
Length = 219
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFR-STVIVDDVRYDSLPGFFNRKAAEQSA 74
K+RLQE+ Q G+P P YE + G H F S I + + + + +R+AAEQ A
Sbjct: 145 KTRLQEWLQAKGLPLPHYELVASHGEDHAKTFEVSCSIGEPIAFTAEAHGGSRRAAEQDA 204
Query: 75 AEVALVEL 82
AE L +L
Sbjct: 205 AEAVLNQL 212
>gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
Length = 222
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q + P YE I +G +H F+ T ++ + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLKLPAYEVIDIKGEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAA 213
Query: 76 EVALVELAK 84
E LV+L K
Sbjct: 214 EQVLVKLNK 222
>gi|335429770|ref|ZP_08556668.1| ribonuclease III [Haloplasma contractile SSD-17B]
gi|334889780|gb|EGM28065.1| ribonuclease III [Haloplasma contractile SSD-17B]
Length = 239
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
+S+ +KS+LQE Q + Y + E GP+H F + V +D+++ G ++K
Sbjct: 160 LSHVMDYKSKLQELVQTDSARSVTYLIVDEIGPAHNKTFVAEVSMDEIKMGVGEGH-SKK 218
Query: 69 AAEQSAAEVALVELA 83
AEQ+AA++AL ++A
Sbjct: 219 EAEQNAAKIALEKMA 233
>gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 234
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F VIV
Sbjct: 161 FKSILQEYVQKEFRTVPTYELIAERGPDHMKEFEIQVIV 199
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ +P PVY T+++ GP+H P F V+V+ + G +++ AEQ AA
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASG-KSKRLAEQLAA 218
Query: 76 EVAL 79
L
Sbjct: 219 AAML 222
>gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13]
gi|421145410|ref|ZP_15605285.1| ribonuclease III [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13]
gi|395488194|gb|EJG09074.1| ribonuclease III [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 234
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F VIV
Sbjct: 161 FKSILQEYVQKEFRTVPTYELIAERGPDHMKEFEIQVIV 199
>gi|383821032|ref|ZP_09976283.1| ribonuclease III [Mycobacterium phlei RIVM601174]
gi|383334063|gb|EID12506.1| ribonuclease III [Mycobacterium phlei RIVM601174]
Length = 232
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H+ F +TV+V D Y
Sbjct: 161 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFTATVVVADTEY 203
>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
Length = 338
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ PVYE + GP HE F + V++++ + G +K AE AA
Sbjct: 261 WKTSLQELCARRGLRPPVYEVTEAGPDHEKLFTAVVLIEEKSLGTGSG-RTKKEAEMKAA 319
>gi|350416408|ref|XP_003490938.1| PREDICTED: microprocessor complex subunit DGCR8-like [Bombus
impatiens]
Length = 639
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 352 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 408
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG++ G+T
Sbjct: 409 KKQAKANAARKTLEILIPQMRDKISGDNGGDT 440
>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 226
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+RLQE+ Q G P P+Y I+E G +HE F V S+PG +R+
Sbjct: 155 KTRLQEFLQGRGRPLPIYTLIEEKGQAHERRF--------VARCSVPGIEPTEAEDGSRR 206
Query: 69 AAEQSAAEVALVEL 82
AEQ AA + L +L
Sbjct: 207 KAEQQAATLMLTQL 220
>gi|357623751|gb|EHJ74777.1| putative tRNA-dihydrouridine synthase [Danaus plexippus]
Length = 438
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
KS+L + K G P YET E FRS + ++ +Y S N+K AEQ AA
Sbjct: 361 KSQLHAWVGKNGYKVPTYET----HQVEKLFRSILTLNGKKYTSTFWEKNKKFAEQGAAL 416
Query: 77 VALV--------ELAKLGKV 88
VAL EL KLG +
Sbjct: 417 VALYHLGLITEEELIKLGSI 436
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y +EGP HE F + V V Y + G ++K AEQ AA
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 235
Query: 76 E 76
E
Sbjct: 236 E 236
>gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS]
gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS]
gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS]
gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS]
gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS]
gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS]
Length = 234
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H+ F +TV+V D+ Y
Sbjct: 162 WKSSLQELTAARGLGAPHYVVTSTGPDHDKEFTATVLVTDIEY 204
>gi|328778714|ref|XP_397444.4| PREDICTED: microprocessor complex subunit DGCR8-like [Apis
mellifera]
Length = 638
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 351 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 407
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG++ G+T
Sbjct: 408 KKQAKANAARKTLEILIPQMRDKISGDNGGDT 439
>gi|383864039|ref|XP_003707487.1| PREDICTED: microprocessor complex subunit DGCR8-like [Megachile
rotundata]
Length = 633
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 346 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 402
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG++ G+T
Sbjct: 403 KKQAKANAARKTLEILIPQMRDKISGDNGGDT 434
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y +EGP HE F + V V Y + G ++K AEQ AA
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 246
Query: 76 E 76
E
Sbjct: 247 E 247
>gi|340717127|ref|XP_003397039.1| PREDICTED: microprocessor complex subunit DGCR8-like [Bombus
terrestris]
Length = 639
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 352 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 408
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG++ G+T
Sbjct: 409 KKQAKANAARKTLEILIPQMRDKISGDNGGDT 440
>gi|417402454|gb|JAA48074.1| Putative interferon-induced double-stranded rna-activated protein
kinase [Desmodus rotundus]
Length = 536
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 5/169 (2%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y+QK + E + GP H+ F+ VI+D+ Y G ++A + +A
Sbjct: 9 FFIEALNKYSQKNNVNVNYRELSRTGPPHDSRFKFQVIIDEKEYPPAEGKSKKEAKDAAA 68
Query: 75 AEV--ALVELAKLGKVNECISQPIHETGLCKNL--LQEYAQKMNYAIPLYQCRKDEASGK 130
AL E ++ V+ + + + + + QK N ++ YQ + +G
Sbjct: 69 KLAFEALKEKEEVSAVSLLTTDTSDDLSMGNYVGQINRLTQKANLSVN-YQQHESYTNGP 127
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
+FSC IG Y TK+ A+ AA+ A I + S +S
Sbjct: 128 ERFSCKCIIGQKEYSSAVGSTKQRAKQLAAKLAYEKILAETSSTKDDSV 176
>gi|380015111|ref|XP_003691553.1| PREDICTED: microprocessor complex subunit DGCR8-like [Apis florea]
Length = 638
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 92 ISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKT 151
I P ++ +C +L EY Q P Y+ ++ E + +S V I D+ Y G +
Sbjct: 351 IMNPSGKSYVC--ILHEYVQHALKKQPTYKFKELENAA-TPYSAVVCINDMEYGSGFGSS 407
Query: 152 KKEAEIKAARTAL-LAIQSSASELSGNSAGNT 182
KK+A+ AAR L + I ++SG++ G+T
Sbjct: 408 KKQAKANAARKTLEILIPQMRDKISGDNGGDT 439
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 347
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDD 55
+K+ LQE + G+ PVYE + GP HE F + V++++
Sbjct: 270 WKTSLQELCARRGLRPPVYEVAEAGPDHEKLFTAVVLIEE 309
>gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 226
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 3 TNEGFSGVSNCYV--FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYD 59
N+ F+ + + + +K++LQEY Q + YE I GPS+ P F V +D++ +
Sbjct: 143 MNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVKLDELIFG 202
Query: 60 SLPGFFNRKAAEQSAAEVALVELAK 84
G ++K AEQ AA+ A +L K
Sbjct: 203 QGKG-LSKKKAEQMAAKDAFEKLVK 226
>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 226
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 157 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 216
Query: 76 EVALVEL 82
E L +L
Sbjct: 217 EQVLAKL 223
>gi|452819315|gb|EME26377.1| ribonuclease III [Galdieria sulphuraria]
Length = 720
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS LQEY E +GPSH+ F +VD V G ++K A+Q AA
Sbjct: 226 YKSLLQEYVNSQNKQVEYVEKSCKGPSHQREFIYHAVVDQVIVGQGKG-ESKKEAQQKAA 284
Query: 76 EVALVELAKLGKVNECISQPIH 97
+ AL L L K +ECI ++
Sbjct: 285 KEALARLGVLSKEDECIQSALY 306
>gi|406927413|gb|EKD63451.1| hypothetical protein ACD_51C00278G0004 [uncultured bacterium]
Length = 239
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS+ QE +Q TPVY+ I+E GP H+ F+ V + D Y G +++ AEQ+AA
Sbjct: 160 KSKFQEISQSKFNITPVYQLIEESGPDHDKSFKMGVYIGDKMYGEGSG-SSKQQAEQNAA 218
Query: 76 EVAL 79
AL
Sbjct: 219 GDAL 222
>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 231
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q G Y+ I E GP+H F V+VD+ R G ++K AEQ A
Sbjct: 162 YKTCLQELLQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTG-RSKKLAEQDA 220
Query: 75 AEVALVELAKL 85
A+ AL +L+++
Sbjct: 221 AKNALAQLSEV 231
>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
gi|259646553|sp|C0MCR4.1|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
Length = 230
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q G Y+ I E GP+H F V+VD+ R G ++K AEQ A
Sbjct: 161 YKTCLQELLQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTG-RSKKLAEQDA 219
Query: 75 AEVALVELAKL 85
A+ AL +L+++
Sbjct: 220 AKNALAQLSEV 230
>gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2]
gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2]
Length = 236
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
K+ LQE+AQ G+P P Y E + GP H P R TV VD LPG + +A
Sbjct: 163 KTVLQEWAQARGLPPPSYREVTRSGPDHAP--RFTVAVD------LPGLASEQA 208
>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 243
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E L +L
Sbjct: 234 EQVLAKL 240
>gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2]
gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2]
Length = 231
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWF 47
K+ LQE+AQ G+P P Y E ++GP H+P F
Sbjct: 159 KTSLQEWAQARGLPPPAYIELGRDGPDHQPQF 190
>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
Length = 244
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQEY QK +P Y+ KE GP H F + V+D + G ++K AE A
Sbjct: 173 YKSLLQEYVQKKYKISPTYKLAKELGPDHNKVFCVELYVNDKFISNGKG-KSKKEAEMIA 231
Query: 75 AEVALVELAKL 85
AE+AL +A +
Sbjct: 232 AEMALKNIANI 242
>gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus]
Length = 513
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y+Q + E GP H+ F VI+++ + G +++ A+ +A
Sbjct: 8 FYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGR-SKQEAKNNA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN----LLQEYAQKMNYAIPLYQCRKDEASGK 130
A++A+ L KV+ E GL + L+ +AQK N + C D +
Sbjct: 67 AKLAVEILDNENKVDSHTDAS--EQGLIEGNYIGLVNSFAQKENLPVNFELCDPD-SQLP 123
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTA 163
+F C +IG Y G KKEA+ AA+ A
Sbjct: 124 HRFICKCKIGQTTYGTGFGANKKEAKQLAAKNA 156
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 5 EGFSGVSNCYV---FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDS 60
E GV+ +K++LQE AQ+ TP Y+ I E GP HE F V + Y
Sbjct: 152 EALDGVAQALSRLDYKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVYAR 211
Query: 61 LPGFFNRKAAEQSAAEVALVELAK 84
G ++K AEQ+AA AL LA+
Sbjct: 212 ATG-RSKKEAEQNAAHAALKWLAR 234
>gi|359300160|ref|ZP_09185999.1| ribonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305203|ref|ZP_10824262.1| ribonuclease III [Haemophilus sputorum HK 2154]
gi|400376316|gb|EJP29203.1| ribonuclease III [Haemophilus sputorum HK 2154]
Length = 223
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q P P+YE I +G +H F+ + V + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQSRKQPLPIYEVIDIKGEAHNQTFKVSCQVTQLDMLFIGSGTSRRKAEQNAA 213
Query: 76 EVALVELAK 84
E L + K
Sbjct: 214 EQVLAAITK 222
>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
Length = 243
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E L +L
Sbjct: 234 EQVLAKL 240
>gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase
[Rattus norvegicus]
gi|81910551|sp|Q63184.1|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated
protein kinase; AltName: Full=Eukaryotic translation
initiation factor 2-alpha kinase 2; Short=eIF-2A protein
kinase 2; AltName: Full=Interferon-inducible
RNA-dependent protein kinase; AltName: Full=Protein
kinase RNA-activated; Short=PKR; AltName:
Full=Tyrosine-protein kinase EIF2AK2
gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus]
Length = 513
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y+Q + E GP H+ F VI+++ + G +++ A+ +A
Sbjct: 8 FYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGR-SKQEAKNNA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN----LLQEYAQKMNYAIPLYQCRKDEASGK 130
A++A+ L KV+ E GL + L+ +AQK N + C D +
Sbjct: 67 AKLAVEILDNENKVDSHTDAS--EQGLIEGNYIGLVNSFAQKENLPVNFELCDPD-SQLP 123
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTA 163
+F C +IG Y G KKEA+ AA+ A
Sbjct: 124 HRFICKCKIGQTTYGTGFGANKKEAKQLAAKNA 156
>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 224
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P Y+ + +G +H FR T V +V + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAA 213
Query: 76 EVAL 79
E AL
Sbjct: 214 EKAL 217
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +T ++ Y + G +K AEQ AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVG-RTKKEAEQKAA 232
Query: 76 EVA 78
A
Sbjct: 233 SAA 235
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K LQE + +P Y+ +F+ T IG Y G +TKKEAE KAA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQKAAS 233
Query: 162 TALLAIQSSASELSGNSAGNTQ 183
A A+ + +G++ + Q
Sbjct: 234 AAWNALTEGTAAETGDAGASDQ 255
>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 243
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E L +L
Sbjct: 234 EQVLAKL 240
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQE A + G+P P Y+ GP H F + V V D + G ++K AE +AA
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGEG-SSKKQAEMTAAL 226
Query: 77 VALVEL 82
A L
Sbjct: 227 EAWTRL 232
>gi|407983092|ref|ZP_11163753.1| ribonuclease III [Mycobacterium hassiacum DSM 44199]
gi|407375375|gb|EKF24330.1| ribonuclease III [Mycobacterium hassiacum DSM 44199]
Length = 229
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H F +TV++ DV Y
Sbjct: 161 WKSSLQELTAARGLGAPTYVVTSTGPDHNKEFTATVLITDVEY 203
>gi|390474609|ref|XP_003734807.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced, double-stranded
RNA-activated protein kinase [Callithrix jacchus]
Length = 552
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 21/196 (10%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y QK G+ E GP H+ F VI+D + G ++ +++
Sbjct: 9 FFMEELNKYRQKQGVVLRYKELPNSGPPHDRRFAFQVIIDGREFPEAEG----RSKKEAK 64
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A V + L K N+ +S P+ T G L+ AQK + QC
Sbjct: 65 NAAAKVAVEILNKENKAVS-PLSLTPTDSSERSSMGNYIGLINRIAQKERLTVNYEQCAS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQL 184
+G F ++G Y G TK+EA+ AA+ A L I S E S + + +
Sbjct: 124 G-VNGPEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQIHKS-EETSVKADSTSSV 181
Query: 185 TVLPSRKRGPEVANNP 200
+ P R + NNP
Sbjct: 182 SFTPVR----DSKNNP 193
>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 243
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E L +L
Sbjct: 234 EQVLAKL 240
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ +KS+LQE Q+ GI Y ++E GP+H F S V ++ + G ++K
Sbjct: 166 FSHVMDYKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTG-KSKK 224
Query: 69 AAEQSAAEVALVEL 82
AEQ AAE+AL L
Sbjct: 225 EAEQHAAEIALKNL 238
>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
Length = 231
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q+ G P P+Y + +G +H F + + S+ + + AEQSAA
Sbjct: 157 KTRLQEYLQRHGCPLPIYYVNRIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAA 216
Query: 76 EVAL 79
E AL
Sbjct: 217 ENAL 220
>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452744321|ref|ZP_21944167.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452087566|gb|EME03943.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
Length = 224
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P Y+ + +G +H FR T V +V + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAA 213
Query: 76 EVAL 79
E AL
Sbjct: 214 EKAL 217
>gi|417851881|ref|ZP_12497549.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338218195|gb|EGP03985.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 225
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P Y ++ +G +H F V ++ + +R+ AEQ+AA
Sbjct: 156 KTRLQEYLQGKRLPLPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAA 215
Query: 76 EVALVEL 82
E L EL
Sbjct: 216 EKILQEL 222
>gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba]
gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba]
Length = 473
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K++L +A KAG P YET + FRS D R+ S N+K A
Sbjct: 390 SDNHLPKTQLYVHAGKAGKSPPAYET----QQCDKLFRSICSYDGQRFSSSFWEKNKKQA 445
Query: 71 EQSAAEVALVELAKL 85
EQ AA VAL+ L +L
Sbjct: 446 EQGAALVALLHLGQL 460
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y + GP HE F + V V Y + G ++K AEQ AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 237
Query: 76 EVALVEL 82
E A E+
Sbjct: 238 ESAWREI 244
>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 243
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 174 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 233
Query: 76 EVALVEL 82
E L +L
Sbjct: 234 EQVLAKL 240
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G PVYE GP H+ F +TV+V + G +K AEQ AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVG-RTKKEAEQKAA 196
Query: 76 EVALVEL 82
A L
Sbjct: 197 SSAWQTL 203
>gi|336066144|ref|YP_004561002.1| ribonuclease III [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334296090|dbj|BAK31961.1| ribonuclease III [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 226
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 3 TNEGFSGVSNCYV--FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYD 59
N+ F+ + + + +K++LQEY Q + YE I GPS+ P F V +D++ +
Sbjct: 143 MNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVKLDELIFG 202
Query: 60 SLPGFFNRKAAEQSAAEVALVELAK 84
G ++K AEQ AA+ A +L K
Sbjct: 203 QGKG-LSKKKAEQMAAKDAFEKLVK 226
>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|238687533|sp|B0BUA6.1|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 223
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPTYEVLNIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 213
Query: 76 EVALVEL 82
E L +L
Sbjct: 214 EQVLAKL 220
>gi|386752652|ref|YP_006225871.1| ribonuclease III [Helicobacter pylori Shi169]
gi|384558910|gb|AFH99377.1| ribonuclease III [Helicobacter pylori Shi169]
Length = 239
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P Y+ +KE GP H F + + D Y + G N+K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKG-KNKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYQALQKL 235
>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
Length = 252
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G PVY +GP HE F + V +D VR G N+K AEQ++A
Sbjct: 175 WKTELQERVAELGGNPPVYTATAKGPEHEQIFTAEVAIDGVRRGVGRG-QNKKTAEQNSA 233
Query: 76 EVALVEL 82
A L
Sbjct: 234 REAFFFL 240
>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
gi|254807496|sp|B8F3C7.1|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
SH0165]
Length = 223
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P YE I +G +H F+ + V+ V + +R+ AEQ AA
Sbjct: 154 KTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAA 213
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V ++ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVALVEL 82
A+VA +L
Sbjct: 231 AKVAYEDL 238
>gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174463|ref|YP_004651273.1| ribonuclease 3 [Parachlamydia acanthamoebae UV-7]
gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478821|emb|CCB85419.1| ribonuclease 3 [Parachlamydia acanthamoebae UV-7]
Length = 236
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQ+Y QK TP Y I E GP H F+ +V ++D G ++K A+Q A
Sbjct: 166 WKALLQDYCQKKYQTTPSYHVIDEKGPDHSKTFKISVFLNDEEVGKGEG-GSKKEAQQKA 224
Query: 75 AEVAL 79
AE AL
Sbjct: 225 AEDAL 229
>gi|410667365|ref|YP_006919736.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
gi|409105112|gb|AFV11237.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
Length = 235
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
GV+ Y K+ LQE Q G +P Y+ ++E GP H+ F S V + D G ++
Sbjct: 155 GVTRDY--KTHLQELVQSKGNESPYYQILEESGPDHDKKFTSGVFLKDKLLGKGTG-KSK 211
Query: 68 KAAEQSAAEVALVELAK 84
K +EQ+AA AL L K
Sbjct: 212 KESEQNAARAALEYLRK 228
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVD 54
+++K++LQ Y QK + PVY + EGP H F+ V VD
Sbjct: 118 HLYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVD 158
>gi|336401671|ref|ZP_08582433.1| ribonuclease 3 [Fusobacterium sp. 21_1A]
gi|336160772|gb|EGN63804.1| ribonuclease 3 [Fusobacterium sp. 21_1A]
Length = 234
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVR 57
FKS LQEY QK P Y+ I E GP H F VIV + R
Sbjct: 161 FKSILQEYVQKEFRTVPTYKLIAERGPDHMKEFEIQVIVGNYR 203
>gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1]
gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33]
gi|336419730|ref|ZP_08599984.1| ribonuclease III [Fusobacterium sp. 11_3_2]
gi|423137366|ref|ZP_17125009.1| ribonuclease 3 [Fusobacterium nucleatum subsp. animalis F0419]
gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1]
gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33]
gi|336162744|gb|EGN65690.1| ribonuclease III [Fusobacterium sp. 11_3_2]
gi|371960299|gb|EHO77959.1| ribonuclease 3 [Fusobacterium nucleatum subsp. animalis F0419]
Length = 234
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVR 57
FKS LQEY QK P Y+ I E GP H F VIV + R
Sbjct: 161 FKSILQEYVQKEFRTVPTYKLIAERGPDHMKEFEIQVIVGNYR 203
>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
gi|254807894|sp|B8EK13.1|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
Length = 235
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
K+ LQE+AQ G+P P Y ET + GP H P F +V + + GF R A
Sbjct: 158 KTTLQEWAQARGLPPPSYRETARTGPDHAPEFTISVEIAGFQQAEARGFAKRLA 211
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS+LQ+YAQK TP Y ++E GP H F+ + ++ G +K AEQ A
Sbjct: 162 YKSQLQQYAQKNHGTTPTYHLLEEKGPDHRKCFKILARIGSHQFPPAWG-QTKKDAEQRA 220
Query: 75 AEVALVELAKL 85
A+ AL L L
Sbjct: 221 AQNALSVLRGL 231
>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
Length = 223
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 213
Query: 76 EVALVEL 82
E L +L
Sbjct: 214 EQVLAKL 220
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V ++ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVALVEL 82
A+VA +L
Sbjct: 231 AKVAYEDL 238
>gi|410942221|ref|ZP_11374008.1| ribonuclease III [Leptospira noguchii str. 2006001870]
gi|410782476|gb|EKR71480.1| ribonuclease III [Leptospira noguchii str. 2006001870]
Length = 247
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y E GP H F+ V + D +++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRIKSESGPDHAKTFQVVVKIRD-QWEAIGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10]
gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10]
Length = 261
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE+ Q+ Y ++E GP+H F S V++DD + + G ++K
Sbjct: 179 FSHMMDFKSQLQEFIQRENQGQVQYRIVEEKGPAHAREFVSEVMLDDDQLGTGVG-KSKK 237
Query: 69 AAEQSAAEVALVEL 82
AEQ AA+ AL +L
Sbjct: 238 EAEQMAAQEALKKL 251
>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 223
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 213
Query: 76 EVALVEL 82
E L +L
Sbjct: 214 EQVLAKL 220
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y +EGP HE F + V V Y + G ++K AEQ AA
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 258
Query: 76 E 76
E
Sbjct: 259 E 259
>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
Length = 261
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYE-TIKEGPSHEPWFRSTVIV 53
K+ LQE+AQ G P P YE T + GP+HEP F V V
Sbjct: 190 KTTLQEWAQGRGKPLPRYELTERSGPAHEPLFVVAVHV 227
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 2 PTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSL 61
P E S + +K+ LQE G+ P Y + GP HE F + V V Y +
Sbjct: 163 PLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG 222
Query: 62 PGFFNRKAAEQSAAEVALVEL 82
G ++K AEQ AAE A E+
Sbjct: 223 TG-RSKKEAEQQAAESAWREI 242
>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|189043287|sp|A3MZQ9.1|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 223
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 213
Query: 76 EVALVEL 82
E L +L
Sbjct: 214 EQVLAKL 220
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE Q+A Y IKE GP+H F S V+++ G ++K
Sbjct: 171 FSHVMDFKSQLQEMVQQANSGALQYTIIKENGPAHNRTFVSQVMLNGKELGVGNG-KSKK 229
Query: 69 AAEQSAAEVALVELAK 84
AEQ AA+ A+V L K
Sbjct: 230 EAEQKAAQSAMVALKK 245
>gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11]
gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11]
Length = 234
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVR 57
FKS LQEY QK P Y+ I E GP H F VIV + R
Sbjct: 161 FKSILQEYVQKEFRTVPTYKLIAERGPDHMKEFEIQVIVGNYR 203
>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
Length = 273
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRY--DSLPGFFNRKAAEQ 72
+KS+L EY Q +P PVY+ I +EG HE F V VDD + + P +K AEQ
Sbjct: 200 YKSQLIEYTQSHHLPPPVYKVIAEEGAEHEKTFTIEVSVDDRQMGQGTAP---RKKDAEQ 256
Query: 73 SAAEVAL 79
AA A+
Sbjct: 257 LAAREAI 263
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 2 PTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSL 61
P E S + +K+ LQE G+ P Y + GP HE F + V V Y +
Sbjct: 160 PLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG 219
Query: 62 PGFFNRKAAEQSAAEVALVEL 82
G ++K AEQ AAE A E+
Sbjct: 220 TG-RSKKEAEQQAAESAWREI 239
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 95 PIHETGL-CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKK 153
P+ GL K LQE +P Y+ + +FS TV +G G+ TKK
Sbjct: 162 PLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKK 221
Query: 154 EAEIKAARTA 163
EAE KAA TA
Sbjct: 222 EAEQKAAETA 231
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVD--DVRYDSLPGFFNRKAAEQS 73
+K+ LQE AG+ P Y+ GP H F +TV+V ++ Y S +K AEQ
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGS---GTTKKEAEQK 226
Query: 74 AAEVALVELA 83
AAE A +L+
Sbjct: 227 AAETAWRQLS 236
>gi|383864643|ref|XP_003707787.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A-like [Megachile
rotundata]
Length = 346
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 20 LQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVA 78
L EY Q + +PVYE + GPSH P F + +D +R + ++AA+ AA+
Sbjct: 121 LNEYCQGHNLSSPVYENVGMTGPSHLPMFTVSCAIDSIRQEGCAN--TKQAAKHQAAKKV 178
Query: 79 LVEL 82
L L
Sbjct: 179 LENL 182
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y +EGP HE F + V V Y + G ++K AEQ AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 274
Query: 76 E 76
E
Sbjct: 275 E 275
>gi|410925411|ref|XP_003976174.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Takifugu rubripes]
Length = 522
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+ +RL EYAQ+ + + +GP H FR ++DD Y G ++A +++A
Sbjct: 4 YVARLNEYAQENRLSLQYQDVGCDGPDHLKTFRVRAVIDDQAYPEGLGKNKKEAKKKAAE 63
Query: 76 EV--ALVELAK--------LGKVNECISQ-PIHETGLCKNLLQEYAQKMNYAIPLYQCRK 124
AL++ + G+ SQ PI T L EY QK ++ L + +
Sbjct: 64 NAWRALMQEHRDSETQTENAGQSPSTPSQAPITRTNFVA-WLNEYGQKNRVSVKLVESTR 122
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
G + C +GD Y KTK+EA+ +AAR
Sbjct: 123 PGLRG-AELCCRFVVGDQEYPDAVGKTKREAKEEAAR 158
>gi|422456219|ref|ZP_16532887.1| ribonuclease III [Propionibacterium acnes HL030PA1]
gi|422458756|ref|ZP_16535407.1| ribonuclease III [Propionibacterium acnes HL050PA2]
gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2]
gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1]
Length = 265
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|427425052|ref|ZP_18915164.1| ribonuclease III [Acinetobacter baumannii WC-136]
gi|425698369|gb|EKU68013.1| ribonuclease III [Acinetobacter baumannii WC-136]
Length = 155
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ +V D LP + +R+ AE
Sbjct: 88 KSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVV-----DGLPKIYGEGSSRRFAE 142
Query: 72 QSAA 75
Q+AA
Sbjct: 143 QAAA 146
>gi|375135607|ref|YP_004996257.1| ribonuclease III, ds RNA, partial [Acinetobacter calcoaceticus
PHEA-2]
gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2]
Length = 176
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ +V D LP + +R+ AE
Sbjct: 109 KSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVV-----DGLPKIYGEGSSRRFAE 163
Query: 72 QSAA 75
Q+AA
Sbjct: 164 QAAA 167
>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
Length = 223
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P YE I +G +H F+ + V+ V + +R+ AEQ AA
Sbjct: 154 KTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAA 213
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V ++ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVALVEL 82
A+VA +L
Sbjct: 231 AKVAYEDL 238
>gi|422387745|ref|ZP_16467856.1| ribonuclease III [Propionibacterium acnes HL096PA2]
gi|422393665|ref|ZP_16473715.1| ribonuclease III [Propionibacterium acnes HL099PA1]
gi|422395435|ref|ZP_16475475.1| ribonuclease III [Propionibacterium acnes HL097PA1]
gi|422425598|ref|ZP_16502532.1| ribonuclease III [Propionibacterium acnes HL043PA1]
gi|422427396|ref|ZP_16504312.1| ribonuclease III [Propionibacterium acnes HL087PA1]
gi|422432639|ref|ZP_16509508.1| ribonuclease III [Propionibacterium acnes HL059PA2]
gi|422434195|ref|ZP_16511055.1| ribonuclease III [Propionibacterium acnes HL083PA2]
gi|422438646|ref|ZP_16515484.1| ribonuclease III [Propionibacterium acnes HL092PA1]
gi|422444313|ref|ZP_16521108.1| ribonuclease III [Propionibacterium acnes HL002PA1]
gi|422451394|ref|ZP_16528097.1| ribonuclease III [Propionibacterium acnes HL030PA2]
gi|422453547|ref|ZP_16530243.1| ribonuclease III [Propionibacterium acnes HL087PA3]
gi|422462688|ref|ZP_16539310.1| ribonuclease III [Propionibacterium acnes HL038PA1]
gi|422473635|ref|ZP_16550109.1| ribonuclease III [Propionibacterium acnes HL056PA1]
gi|422477336|ref|ZP_16553769.1| ribonuclease III [Propionibacterium acnes HL007PA1]
gi|422485989|ref|ZP_16562346.1| ribonuclease III [Propionibacterium acnes HL043PA2]
gi|422491913|ref|ZP_16568223.1| ribonuclease III [Propionibacterium acnes HL086PA1]
gi|422495155|ref|ZP_16571444.1| ribonuclease III [Propionibacterium acnes HL025PA1]
gi|422499381|ref|ZP_16575645.1| ribonuclease III [Propionibacterium acnes HL063PA2]
gi|422510007|ref|ZP_16586158.1| ribonuclease III [Propionibacterium acnes HL059PA1]
gi|422516858|ref|ZP_16592966.1| ribonuclease III [Propionibacterium acnes HL110PA2]
gi|422517358|ref|ZP_16593458.1| ribonuclease III [Propionibacterium acnes HL074PA1]
gi|422521169|ref|ZP_16597201.1| ribonuclease III [Propionibacterium acnes HL045PA1]
gi|422522647|ref|ZP_16598668.1| ribonuclease III [Propionibacterium acnes HL053PA2]
gi|422525753|ref|ZP_16601754.1| ribonuclease III [Propionibacterium acnes HL083PA1]
gi|422528967|ref|ZP_16604942.1| ribonuclease III [Propionibacterium acnes HL053PA1]
gi|422530580|ref|ZP_16606539.1| ribonuclease III [Propionibacterium acnes HL110PA1]
gi|422536762|ref|ZP_16612665.1| ribonuclease III [Propionibacterium acnes HL078PA1]
gi|422540322|ref|ZP_16616191.1| ribonuclease III [Propionibacterium acnes HL013PA1]
gi|422542317|ref|ZP_16618169.1| ribonuclease III [Propionibacterium acnes HL037PA1]
gi|422544439|ref|ZP_16620277.1| ribonuclease III [Propionibacterium acnes HL082PA1]
gi|422547212|ref|ZP_16623034.1| ribonuclease III [Propionibacterium acnes HL050PA3]
gi|422548525|ref|ZP_16624337.1| ribonuclease III [Propionibacterium acnes HL050PA1]
gi|422557216|ref|ZP_16632961.1| ribonuclease III [Propionibacterium acnes HL025PA2]
gi|422560296|ref|ZP_16635986.1| ribonuclease III [Propionibacterium acnes HL005PA1]
gi|422563847|ref|ZP_16639519.1| ribonuclease III [Propionibacterium acnes HL046PA1]
gi|422571260|ref|ZP_16646853.1| ribonuclease III [Propionibacterium acnes HL067PA1]
gi|422579505|ref|ZP_16655027.1| ribonuclease III [Propionibacterium acnes HL005PA4]
gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1]
gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1]
gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1]
gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2]
gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1]
gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1]
gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1]
gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2]
gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1]
gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1]
gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1]
gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4]
gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1]
gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3]
gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1]
gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1]
gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1]
gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1]
gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1]
gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1]
gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1]
gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2]
gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1]
gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1]
gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2]
gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1]
gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2]
gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2]
gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1]
gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2]
gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1]
gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1]
gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3]
gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2]
gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1]
gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2]
gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1]
Length = 265
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|194764929|ref|XP_001964580.1| GF22976 [Drosophila ananassae]
gi|190614852|gb|EDV30376.1| GF22976 [Drosophila ananassae]
Length = 649
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 90 ECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA 149
E I P ++ +C +L EY Q P Y+ K+ + +S TV + +++Y G
Sbjct: 367 EWIMNPNGKSYVC--ILHEYVQHALKTQPTYEF-KELQNAATPYSATVSVKNLKYGTGFG 423
Query: 150 KTKKEAEIKAARTAL-LAIQSSASELSGNS 178
+KK+A+ +AAR L + I +++GNS
Sbjct: 424 TSKKQAKSEAARITLEILIPDVKDKITGNS 453
>gi|422449682|ref|ZP_16526406.1| ribonuclease III [Propionibacterium acnes HL036PA3]
gi|422481390|ref|ZP_16557790.1| ribonuclease III [Propionibacterium acnes HL036PA1]
gi|422497109|ref|ZP_16573386.1| ribonuclease III [Propionibacterium acnes HL002PA3]
gi|422505414|ref|ZP_16581644.1| ribonuclease III [Propionibacterium acnes HL036PA2]
gi|422506917|ref|ZP_16583135.1| ribonuclease III [Propionibacterium acnes HL046PA2]
gi|422566757|ref|ZP_16642385.1| ribonuclease III [Propionibacterium acnes HL002PA2]
gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2]
gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1]
gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2]
gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3]
gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2]
gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3]
Length = 265
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
Length = 222
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE Q G+ PVY I + GP+H P F + VD + + ++K E++AA
Sbjct: 153 KSALQELLQAKGMKPPVYNVIDRSGPAHLPIFEVEICVDGKKRRATGR--SKKLGEENAA 210
Query: 76 EVALVEL 82
+ L EL
Sbjct: 211 RMMLEEL 217
>gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840]
gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653]
gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2]
gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840]
gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2]
gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653]
Length = 257
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A + G PVY + + GP H+P F V V + G +++ AEQSAA
Sbjct: 183 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEG-RSKRIAEQSAA 241
Query: 76 EVAL 79
E L
Sbjct: 242 EAML 245
>gi|433647037|ref|YP_007292039.1| ribonuclease III [Mycobacterium smegmatis JS623]
gi|433296814|gb|AGB22634.1| ribonuclease III [Mycobacterium smegmatis JS623]
Length = 230
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+KS LQE G+ P Y GP H+ F +TVIV +V Y
Sbjct: 161 WKSSLQELTASRGMGVPSYVVTSTGPDHDKEFTATVIVTEVEY 203
>gi|402771631|ref|YP_006591168.1| ribonuclease III [Methylocystis sp. SC2]
gi|401773651|emb|CCJ06517.1| Ribonuclease III [Methylocystis sp. SC2]
Length = 235
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G+ TP Y + + GP H P+F V V
Sbjct: 161 KTALQEWAQARGLATPRYRLVARSGPDHAPFFEVVVEV 198
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y +EGP HE F + V V Y + G ++K AEQ AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 229
Query: 76 EVA 78
E A
Sbjct: 230 ESA 232
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K+ LQE A + +P P Y GP H+ F +TV V DV ++K AE +AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTGTGS--SKKQAEMAAAL 220
Query: 77 VALVEL 82
A EL
Sbjct: 221 TAWREL 226
>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
Length = 247
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 3 TNEG-FSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDS 60
NEG FS V + FKS+LQE Q+ + YE ++E GP+H F S V ++
Sbjct: 165 INEGAFSHVMD---FKSQLQEMIQRNALGVIEYEVLEEKGPAHNREFVSKVSLNKEEMGI 221
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGK 87
G ++K AEQ AA+ AL +L K+ K
Sbjct: 222 GVG-RSKKEAEQHAAQFALQKLKKVRK 247
>gi|398337618|ref|ZP_10522323.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 247
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK PVY E GP H F+ +V + D ++++ ++KAAEQ+A
Sbjct: 177 YKTQLQEYSQKHFKVLPVYRMKGESGPDHAKVFQVSVRIRD-KWEASGSGVSKKAAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella inopinata BO1]
gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella inopinata BO1]
Length = 257
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A + G PVY + + GP H+P F V V + G +++ AEQSAA
Sbjct: 183 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEG-RSKRIAEQSAA 241
Query: 76 EVAL 79
E L
Sbjct: 242 EAML 245
>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|421465513|ref|ZP_15914200.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|421854666|ref|ZP_16287051.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|400203780|gb|EJO34765.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|403189681|dbj|GAB73252.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 230
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ V DSLP F +R+ AE
Sbjct: 163 KSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECSV-----DSLPKFIGEGSSRRFAE 217
Query: 72 QSAA 75
Q+AA
Sbjct: 218 QAAA 221
>gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187]
gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165]
gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137]
gi|335052636|ref|ZP_08545514.1| ribonuclease III [Propionibacterium sp. 409-HC1]
gi|342213540|ref|ZP_08706265.1| ribonuclease III [Propionibacterium sp. CC003-HC2]
gi|365963146|ref|YP_004944712.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965386|ref|YP_004946951.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974320|ref|YP_004955879.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024412|ref|YP_005942717.1| ribonuclease III [Propionibacterium acnes 266]
gi|407935865|ref|YP_006851507.1| ribonuclease III [Propionibacterium acnes C1]
gi|417930209|ref|ZP_12573588.1| ribonuclease III [Propionibacterium acnes SK182]
gi|419421601|ref|ZP_13961829.1| ribonuclease III [Propionibacterium acnes PRP-38]
gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187]
gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165]
gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137]
gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266]
gi|333763102|gb|EGL40569.1| ribonuclease III [Propionibacterium sp. 409-HC1]
gi|340769084|gb|EGR91609.1| ribonuclease III [Propionibacterium sp. CC003-HC2]
gi|340772336|gb|EGR94840.1| ribonuclease III [Propionibacterium acnes SK182]
gi|365739827|gb|AEW84029.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742067|gb|AEW81761.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744319|gb|AEW79516.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|379978092|gb|EIA11417.1| ribonuclease III [Propionibacterium acnes PRP-38]
gi|407904446|gb|AFU41276.1| ribonuclease III [Propionibacterium acnes C1]
gi|456738577|gb|EMF63144.1| ribonuclease III [Propionibacterium acnes FZ1/2/0]
Length = 246
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 231
Query: 76 EVALVEL 82
A+ L
Sbjct: 232 RRAVSAL 238
>gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202]
gi|335054114|ref|ZP_08546935.1| ribonuclease III [Propionibacterium sp. 434-HC2]
gi|387503830|ref|YP_005945059.1| ribonuclease III [Propionibacterium acnes 6609]
gi|333765479|gb|EGL42828.1| ribonuclease III [Propionibacterium sp. 434-HC2]
gi|335277875|gb|AEH29780.1| ribonuclease III [Propionibacterium acnes 6609]
Length = 246
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 231
Query: 76 EVALVEL 82
A+ L
Sbjct: 232 RRAVSAL 238
>gi|354607788|ref|ZP_09025756.1| ribonuclease III [Propionibacterium sp. 5_U_42AFAA]
gi|422385608|ref|ZP_16465740.1| ribonuclease III [Propionibacterium acnes HL096PA3]
gi|422479950|ref|ZP_16556354.1| ribonuclease III [Propionibacterium acnes HL063PA1]
gi|422487459|ref|ZP_16563791.1| ribonuclease III [Propionibacterium acnes HL013PA2]
gi|422491427|ref|ZP_16567741.1| ribonuclease III [Propionibacterium acnes HL020PA1]
gi|422503314|ref|ZP_16579555.1| ribonuclease III [Propionibacterium acnes HL027PA2]
gi|422512831|ref|ZP_16588958.1| ribonuclease III [Propionibacterium acnes HL087PA2]
gi|422551118|ref|ZP_16626913.1| ribonuclease III [Propionibacterium acnes HL005PA3]
gi|422555477|ref|ZP_16631245.1| ribonuclease III [Propionibacterium acnes HL005PA2]
gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2]
gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1]
gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2]
gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3]
gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2]
gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3]
gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2]
gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1]
gi|353556334|gb|EHC25705.1| ribonuclease III [Propionibacterium sp. 5_U_42AFAA]
Length = 265
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|388456739|ref|ZP_10139034.1| ribonuclease III [Fluoribacter dumoffii Tex-KL]
Length = 225
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY Q I P Y K EG H F T V+ ++ + NR+ AEQ AA
Sbjct: 156 KTQLQEYLQAEKIALPEYTLTKIEGDEHNQIFYITCTVNGAKHKTFGQGSNRRKAEQLAA 215
Query: 76 EVALVEL 82
+ L +L
Sbjct: 216 KAMLEQL 222
>gi|389756848|ref|ZP_10191587.1| ribonuclease III [Rhodanobacter sp. 115]
gi|388431197|gb|EIL88290.1| ribonuclease III [Rhodanobacter sp. 115]
Length = 219
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE--GPSHEPWFRSTVIVDDVRYDSLPGFFN-RKAAEQS 73
K+RLQE+ Q G+P P YE +K+ G H F + V + + G N R+AAEQ
Sbjct: 145 KTRLQEWLQGHGLPLPHYE-LKDSYGEDHARTFDVSCAVSEPQDIIAEGSGNSRRAAEQE 203
Query: 74 AAEVALVEL 82
AAEV L L
Sbjct: 204 AAEVVLARL 212
>gi|219689078|ref|NP_001137272.1| interferon-induced, double-stranded RNA-activated protein kinase
[Equus caballus]
gi|61889230|gb|AAX47275.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Equus
caballus]
Length = 540
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
VF L +Y QK + E K GP H+ F VI++ + G K ++A
Sbjct: 9 VFIEELNKYRQKHNVVLDFRELSKTGPPHDLTFTFRVIINGREFPEAEG--KSKKEAKNA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETG--LCKN---LLQEYAQKMNYAIPLYQCRKDEASG 129
A VE+ + K + +T L KN L+ Y Q+ ++ Y+ + G
Sbjct: 67 AAKMAVEILRENKTVSSLPLLTKDTSEELSKNYIGLINTYTQRNQLSLN-YEQYESRDGG 125
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
+F C +IG Y + TK+EA+ AA+ A I S S + +
Sbjct: 126 PKRFRCKYKIGWKEYPIASGSTKQEAKQLAAKLAYDQISSEGSPMKAD 173
>gi|422430651|ref|ZP_16507531.1| ribonuclease III [Propionibacterium acnes HL072PA2]
gi|422533756|ref|ZP_16609687.1| ribonuclease III [Propionibacterium acnes HL072PA1]
gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2]
gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1]
Length = 265
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
gi|169293297|gb|EDS75430.1| ribonuclease III [Clostridium spiroforme DSM 1552]
Length = 226
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE Q T YE + GPS+ P F V +DD+ + G ++K AEQ A
Sbjct: 158 FKTKLQELIQADQRKTVTYELLSATGPSNNPVFEMAVRMDDMILGTGIG-SSKKRAEQQA 216
Query: 75 AEVALVELAK 84
A+ AL +LAK
Sbjct: 217 AKDALNKLAK 226
>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
gi|384955648|sp|F0KKL2.2|RNC_ACICP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
Length = 230
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ +V D LP + +R+ AE
Sbjct: 163 KSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECVV-----DGLPKIYGEGSSRRFAE 217
Query: 72 QSAA 75
Q+AA
Sbjct: 218 QAAA 221
>gi|208690889|gb|ACI31220.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Cercocebus atys]
Length = 554
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 16/168 (9%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y QK GI E GP H+ F V+ D ++ G ++ +++
Sbjct: 9 FFMEELNKYRQKQGITLSYQELPNTGPPHDRRFTFQVVTDRRKFPEAEG----RSKKEAK 64
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A + + L K +E +S P T G ++ AQK + QC
Sbjct: 65 NAAAKLAVDILNKESEAVS-PFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVNYEQCTS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
G F +IGD Y G +K+EA+ AA+ ALL I S
Sbjct: 124 G-VHGPEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETS 170
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 54 DDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIH-ETGL-CKNLLQEYAQ 111
D + D L F E AE V LG +E I + H GL K LQE +
Sbjct: 125 DSILADGLESLFGALYLEHGLAECKTV---ILGLFDEIIGRAGHLGAGLDWKTSLQELSA 181
Query: 112 KMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171
+ Y P YQ +F+ + G +TKKEAE KAA A A+ A
Sbjct: 182 EGGYGPPHYQITSTGPDHNKEFTAVAVVAGESLGQGTGRTKKEAEQKAAALAWQALTERA 241
Query: 172 S 172
S
Sbjct: 242 S 242
>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
Length = 239
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P+Y+ +KE GP H F + + D Y + G ++K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYIQDKMYATAKG-KSKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYQALQKL 235
>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
Length = 227
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY Q IP P Y K EG H F T V+ ++ + NR+ AEQ AA
Sbjct: 156 KTQLQEYLQAEKIPLPEYILTKIEGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAA 215
Query: 76 EVALVEL 82
+ L L
Sbjct: 216 KAMLERL 222
>gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 234
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE + E GP H F VIV
Sbjct: 161 FKSILQEYVQKEFKTVPTYELVAERGPDHMKEFEIQVIV 199
>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
Length = 245
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V V+ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVA 78
A+VA
Sbjct: 231 AKVA 234
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVIV G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|298243648|ref|ZP_06967455.1| hypothetical protein Krac_12191 [Ktedonobacter racemifer DSM 44963]
gi|297556702|gb|EFH90566.1| hypothetical protein Krac_12191 [Ktedonobacter racemifer DSM 44963]
Length = 396
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 192 RGPEV-ANNPEETVNVPKAKKGRFKKK---ILKMKRPGGRMDRTQLQNTGNMENINASQE 247
R PE N EE V + GR K+K ILK RP + + L T N ++ +++
Sbjct: 5 RNPEQPGNELEENVVRGSLRSGRGKRKNTAILKQARPPRK---SALSRTENAKSTAQARK 61
Query: 248 GSKVS--------QANTSGIQGVSTEVLAVEGTMDCQEGRSEIEPIEREMPAVNDALPHH 299
GS+V+ AN G+ S+ + A+ R+EI I RE+ + +
Sbjct: 62 GSQVAADNVPVLNSANEKGLSPFSSTLHAI-----LHRNRAEIGRISRELDVAENTIYRW 116
Query: 300 IGGDSETIHSAATHCSDRSSNEASEMGTSSLAKEVNEVTPGV 341
+ G S+ HS + D S M + +N+ PGV
Sbjct: 117 MNGTSDPRHSHLRNLPDVMSEHRQAM-----IQAINKTFPGV 153
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y + GP HE F + V V Y + G ++K AEQ AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 225
Query: 76 EVALVEL 82
E A E+
Sbjct: 226 ESAWREI 232
>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
Length = 270
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKA-AEQS 73
+KSRL EY Q +P PVY ++E G HE F V D S G RK AEQ
Sbjct: 194 YKSRLIEYTQSRHLPMPVYSVLEECGAEHEKQFTVGVSCSDRHLGS--GTARRKKDAEQL 251
Query: 74 AAEVAL 79
AA+ AL
Sbjct: 252 AAKEAL 257
>gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG-6]
gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6]
Length = 235
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRY 58
+++RLQE AQ TP Y + GP H+ F V++D+VRY
Sbjct: 160 YRTRLQEQAQSRFNRTPTYRMVDVSGPDHQREFTMEVVIDEVRY 203
>gi|418693972|ref|ZP_13255019.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|421108602|ref|ZP_15569138.1| ribonuclease III [Leptospira kirschneri str. H2]
gi|409958205|gb|EKO17099.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|410006205|gb|EKO59965.1| ribonuclease III [Leptospira kirschneri str. H2]
Length = 249
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRD-QWEATGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVIV G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|357384164|ref|YP_004898888.1| ribonuclease III [Pelagibacterium halotolerans B2]
gi|351592801|gb|AEQ51138.1| ribonuclease III [Pelagibacterium halotolerans B2]
Length = 235
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P Y ET + GP H P F +V V + G ++K AE AA
Sbjct: 163 KTALQEWAQAKGLEPPAYVETARSGPDHAPVFTISVSVRGFEAITATG-TSKKLAEHQAA 221
Query: 76 EVALV 80
E L+
Sbjct: 222 EKFLL 226
>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
Length = 232
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q T YE ++ GPS+ P F+ VI+D++R G ++K AEQ A
Sbjct: 158 YKTTLQELIQADQRKTVTYELLETSGPSNAPEFKVAVIMDEMRLGVGKG-TSKKRAEQQA 216
Query: 75 AEVALVELA 83
A+ AL +LA
Sbjct: 217 AKDALNKLA 225
>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
Length = 246
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 176 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 235
Query: 162 TALLAIQ 168
AL A++
Sbjct: 236 VALKAME 242
>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
Length = 231
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS+LQE AQ G+ Y ++E GP+H+ F V + ++ Y + G +K AEQ A
Sbjct: 163 FKSKLQERAQHKGLGAVEYRIMEERGPAHDREFVVEVCIGEIPYGNGSG-RTKKEAEQRA 221
Query: 75 AEVA 78
A VA
Sbjct: 222 AAVA 225
>gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
Length = 228
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G+ P Y +T + GP H P F T +D+ ++ +++AAEQ+AA
Sbjct: 159 KTALQEWAQARGLMPPRYVQTDRSGPDHAPVFTITARLDN-GAEAAATAPSKRAAEQAAA 217
Query: 76 EVALVELAK 84
L +L K
Sbjct: 218 TTLLRQLEK 226
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V V+ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVA 78
A+VA
Sbjct: 231 AKVA 234
>gi|335047086|ref|ZP_08540107.1| ribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333760894|gb|EGL38449.1| ribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 238
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF---FNRKAAE 71
+KS LQEY K Y + E GP H+ F V VDD+ + G+ N+K AE
Sbjct: 167 YKSYLQEYFHKNASTKINYTLVAERGPDHDKEFDMCVNVDDI----VKGYGTGKNKKQAE 222
Query: 72 QSAAEVALVE 81
Q AA AL++
Sbjct: 223 QQAARDALIK 232
>gi|421525956|ref|ZP_15972565.1| ribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257715|gb|EJU08188.1| ribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 234
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE + E GP H F VIV
Sbjct: 161 FKSILQEYVQKEFRTVPTYELVAERGPDHMKEFEIQVIV 199
>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 240
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAAEQSA 74
+K+ LQE A P Y + GP H+ F + +VD +D PG N+K AEQ A
Sbjct: 164 WKTSLQEIAAAMESDPPEYRISETGPDHDKRFTAVALVDGRTFD--PGMGHNKKQAEQHA 221
Query: 75 AEVAL 79
AE A
Sbjct: 222 AENAF 226
>gi|410679488|ref|YP_006931890.1| ribonuclease III [Borrelia afzelii HLJ01]
gi|408536876|gb|AFU75007.1| ribonuclease III [Borrelia afzelii HLJ01]
Length = 245
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPNYKLEKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVIV G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVIV G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVIV G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|386854106|ref|YP_006203391.1| Ribonuclease III [Borrelia garinii BgVir]
gi|408671311|ref|YP_006871382.1| ribonuclease III [Borrelia garinii NMJW1]
gi|365194140|gb|AEW69038.1| Rnc [Borrelia garinii BgVir]
gi|407241133|gb|AFT84016.1| ribonuclease III [Borrelia garinii NMJW1]
Length = 245
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|425740592|ref|ZP_18858760.1| ribonuclease III [Acinetobacter baumannii WC-487]
gi|425494615|gb|EKU60814.1| ribonuclease III [Acinetobacter baumannii WC-487]
Length = 176
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ +V D LP + +R+ AE
Sbjct: 109 KSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLV-----DGLPKIYGEGSSRRFAE 163
Query: 72 QSAA 75
Q+AA
Sbjct: 164 QAAA 167
>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|386076104|ref|YP_005990293.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|417759749|ref|ZP_12407783.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|417766447|ref|ZP_12414399.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417772776|ref|ZP_12420664.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417776508|ref|ZP_12424345.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|417786880|ref|ZP_12434565.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|418666248|ref|ZP_13227679.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671381|ref|ZP_13232733.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|418681884|ref|ZP_13243106.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418691029|ref|ZP_13252136.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|418704885|ref|ZP_13265752.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710583|ref|ZP_13271353.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|418712860|ref|ZP_13273589.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|418725505|ref|ZP_13284123.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|418733745|ref|ZP_13290856.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|421086812|ref|ZP_15547660.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|421103899|ref|ZP_15564495.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115968|ref|ZP_15576361.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421119574|ref|ZP_15579894.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|421128301|ref|ZP_15588516.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421135834|ref|ZP_15595954.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|59798574|sp|Q75FW5.1|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|59798588|sp|Q8EXX3.1|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|353459766|gb|AER04310.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|400326401|gb|EJO78668.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400351274|gb|EJP03514.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400360065|gb|EJP16046.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|409944497|gb|EKN90080.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|409945453|gb|EKN95469.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409949732|gb|EKO04265.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|409961142|gb|EKO24889.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|410012464|gb|EKO70562.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020139|gb|EKO86944.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410347725|gb|EKO98598.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|410366380|gb|EKP21772.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430841|gb|EKP75204.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|410434026|gb|EKP83167.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410573717|gb|EKQ36762.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|410581642|gb|EKQ49451.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|410758195|gb|EKR19794.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410765498|gb|EKR36198.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769172|gb|EKR44415.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|410772926|gb|EKR52958.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|410790629|gb|EKR84321.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|455669787|gb|EMF34845.1| ribonuclease III [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|456825599|gb|EMF73977.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966676|gb|EMG08210.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
gi|456983734|gb|EMG19964.1| ribonuclease III [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 247
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRD-QWEASGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 234
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F V+V
Sbjct: 161 FKSILQEYVQKNFKTVPTYELISEKGPDHMKEFEIQVVV 199
>gi|340753030|ref|ZP_08689823.1| ribonuclease 3 [Fusobacterium sp. 2_1_31]
gi|229422819|gb|EEO37866.1| ribonuclease 3 [Fusobacterium sp. 2_1_31]
Length = 234
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F V+V
Sbjct: 161 FKSILQEYVQKNFKTVPTYELISEKGPDHMKEFEIQVVV 199
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 58 YDSLPGFFNRKAAEQSAAEVALVELAKLG--KVNECISQPIHETGLCKNLLQEYAQKMNY 115
++++ G + + Q+ E+ A +G K+ E IS E K LLQ+YAQK +
Sbjct: 282 FEAIIGAYYLDSGIQAVQEIVYPLFASVGEDKIPENISLENLENA--KGLLQQYAQKNGF 339
Query: 116 AIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
IP Y ++ + +F+ VEIG G K KK+AE +AA AL
Sbjct: 340 DIPEYTTIQETGTDHNKEFTVQVEIGGQICGQGKGKRKKDAEKQAAANAL 389
>gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506]
gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506]
Length = 243
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+P P Y + + GP H P FR V LPG+
Sbjct: 176 KTALQEWAQGRGLPPPHYRLVERSGPDHNPEFRIAV--------ELPGY 216
>gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202]
Length = 366
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 293 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 351
Query: 76 EVALVEL 82
A+ L
Sbjct: 352 RRAVSAL 358
>gi|422315623|ref|ZP_16397052.1| ribonuclease 3 [Fusobacterium periodonticum D10]
gi|404592210|gb|EKA94095.1| ribonuclease 3 [Fusobacterium periodonticum D10]
Length = 234
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F V+V
Sbjct: 161 FKSILQEYVQKNFKTVPTYELISEKGPDHMKEFEIQVVV 199
>gi|430742662|ref|YP_007201791.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
gi|430014382|gb|AGA26096.1| ribonuclease III [Singulisphaera acidiphila DSM 18658]
Length = 241
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQ+ AQ+ TP Y + E GP H F+ + + RY G N+K AEQ A
Sbjct: 165 YKSNLQQVAQRQFGETPTYLLLDEKGPDHSKCFKISAQIGRQRYAPAWG-RNKKDAEQRA 223
Query: 75 AEVALVELA 83
A AL +L+
Sbjct: 224 AMNALSQLS 232
>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
gi|81609804|sp|Q660G7.1|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
Length = 245
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|418699115|ref|ZP_13260082.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410761975|gb|EKR28146.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 247
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRD-QWEASGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|343128004|ref|YP_004777935.1| ribonuclease III [Borrelia bissettii DN127]
gi|342222692|gb|AEL18870.1| ribonuclease III [Borrelia bissettii DN127]
Length = 245
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQS 169
AL A+++
Sbjct: 235 VALKAMEN 242
>gi|333991297|ref|YP_004523911.1| ribonuclease III Rnc [Mycobacterium sp. JDM601]
gi|333487265|gb|AEF36657.1| ribonuclease III Rnc [Mycobacterium sp. JDM601]
Length = 233
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
+K+ LQE GI P Y+ GP H+ F + V+V D Y S
Sbjct: 162 WKTSLQELTAARGIGVPCYQVSSTGPDHDREFTAIVVVSDTEYGS 206
>gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A]
gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038]
gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1]
gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1]
gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513]
gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686]
gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99]
gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13]
gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026]
gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|376273608|ref|YP_005152186.1| ribonuclease III [Brucella abortus A13334]
gi|376274588|ref|YP_005115027.1| ribonuclease III [Brucella canis HSK A52141]
gi|384211045|ref|YP_005600127.1| ribonuclease III [Brucella melitensis M5-90]
gi|384408136|ref|YP_005596757.1| Ribonuclease III family [Brucella melitensis M28]
gi|384444751|ref|YP_005603470.1| ribonuclease III [Brucella melitensis NI]
gi|423167200|ref|ZP_17153903.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI435a]
gi|423170423|ref|ZP_17157098.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI474]
gi|423173496|ref|ZP_17160167.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI486]
gi|423177219|ref|ZP_17163865.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI488]
gi|423179854|ref|ZP_17166495.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI010]
gi|423182986|ref|ZP_17169623.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI016]
gi|423186072|ref|ZP_17172686.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI021]
gi|423189211|ref|ZP_17175821.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI259]
gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A]
gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038]
gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1]
gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1]
gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99]
gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513]
gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686]
gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13]
gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026]
gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28]
gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90]
gi|349742747|gb|AEQ08290.1| ribonuclease III [Brucella melitensis NI]
gi|363401214|gb|AEW18184.1| ribonuclease III [Brucella abortus A13334]
gi|363403155|gb|AEW13450.1| ribonuclease III [Brucella canis HSK A52141]
gi|374541349|gb|EHR12845.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI474]
gi|374541623|gb|EHR13117.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI435a]
gi|374542825|gb|EHR14312.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI486]
gi|374549699|gb|EHR21141.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI010]
gi|374550218|gb|EHR21657.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI016]
gi|374551726|gb|EHR23158.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI488]
gi|374557754|gb|EHR29149.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI259]
gi|374559460|gb|EHR30848.1| ribonuclease 3 [Brucella abortus bv. 1 str. NI021]
Length = 234
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A + G PVY + + GP H+P F V V + G +++ AEQSAA
Sbjct: 160 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEG-RSKRIAEQSAA 218
Query: 76 EVAL 79
E L
Sbjct: 219 EAML 222
>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
Length = 229
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q P P+Y+ + +G +H F + + + + +R+ AEQ AA
Sbjct: 158 KTRLQEYLQSRQFPLPIYDVLSVDGEAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAA 217
Query: 76 EVALVEL 82
AL EL
Sbjct: 218 RNALKEL 224
>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783042|ref|YP_004749649.1| ribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557193|gb|AEK58947.1| Ribonuclease III [Acidithiobacillus caldus SM-1]
Length = 232
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSA 74
K+RLQE+ Q G P P Y ++E G +HE F + V V D+ G +R+ AEQ A
Sbjct: 155 KTRLQEFLQGQGKPLPSYSLVEEKGQAHERRFVARCSVQGVPATDAEAG--SRRKAEQQA 212
Query: 75 AEVALVELAK 84
A+ L +L K
Sbjct: 213 AQQMLEQLQK 222
>gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330]
gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308]
gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365]
gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445]
gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19]
gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457]
gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
63/9]
gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915]
gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94]
gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33]
gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1]
gi|340790294|ref|YP_004755759.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|376280341|ref|YP_005154347.1| ribonuclease III [Brucella suis VBI22]
gi|384224335|ref|YP_005615499.1| ribonuclease III [Brucella suis 1330]
gi|54039241|sp|P66665.1|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041613|sp|P66664.1|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|75497081|sp|Q57E81.1|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90101615|sp|Q2YN02.1|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043295|sp|A9MA35.1|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043296|sp|B0CKY7.1|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238691497|sp|B2SAD9.1|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807239|sp|C0RI03.1|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M]
gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330]
gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
[Brucella melitensis biovar Abortus 2308]
gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365]
gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445]
gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19]
gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457]
gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915]
gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94]
gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33]
gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1]
gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
63/9]
gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
gi|340558753|gb|AEK53991.1| ribonuclease III [Brucella pinnipedialis B2/94]
gi|343382515|gb|AEM18007.1| ribonuclease III [Brucella suis 1330]
gi|358257940|gb|AEU05675.1| ribonuclease III [Brucella suis VBI22]
Length = 245
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+A + G PVY + + GP H+P F V V + G +++ AEQSAA
Sbjct: 171 KTELQEWAHQQGNVHPVYAILSRSGPDHDPLFLVEVTVKGFAPEKGEG-RSKRIAEQSAA 229
Query: 76 EVAL 79
E L
Sbjct: 230 EAML 233
>gi|418679683|ref|ZP_13240944.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418684609|ref|ZP_13245793.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740311|ref|ZP_13296689.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421092430|ref|ZP_15553172.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|421128722|ref|ZP_15588933.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|400320125|gb|EJO67998.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|409998785|gb|EKO49499.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|410359834|gb|EKP06874.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|410740809|gb|EKQ85523.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752315|gb|EKR09290.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 249
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRD-QWEATGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|452946853|gb|EME52346.1| ribonuclease III [Rhodococcus ruber BKS 20-38]
Length = 253
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV 53
+K+ LQE + G+ P YE GP H+ F +TVIV
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIV 210
>gi|358467414|ref|ZP_09177127.1| hypothetical protein HMPREF9093_01606 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068009|gb|EHI78081.1| hypothetical protein HMPREF9093_01606 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 234
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIV 53
FKS LQEY QK P YE I E GP H F V+V
Sbjct: 161 FKSILQEYVQKNFRTVPTYELISEKGPDHMKEFEIQVVV 199
>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
Length = 263
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 4 NEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLP 62
N+G S+ FKS+LQE+ Q+ + Y ++E GP+H F S V +++ +
Sbjct: 181 NDG--AFSHMMDFKSQLQEFIQRDNLGQIQYVIVQEIGPAHNREFVSEVQLNESKLGVGS 238
Query: 63 GFFNRKAAEQSAAEVALVELA 83
G ++K AEQ AA+ AL++L+
Sbjct: 239 GR-SKKEAEQHAAQQALIKLS 258
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V ++ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVA 78
A+VA
Sbjct: 231 AKVA 234
>gi|406929146|gb|EKD64813.1| hypothetical protein ACD_50C00299G0001 [uncultured bacterium]
Length = 226
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDD 55
KSRLQE AQ+ TP Y+ + E GP H+ F+ V +DD
Sbjct: 160 KSRLQELAQRRESITPRYDVLSESGPDHKRVFKVGVFLDD 199
>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|424054689|ref|ZP_17792213.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|407439438|gb|EKF45963.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
Length = 230
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFF----NRKAAE 71
KSRLQEY Q P PVYE + +G + F+ +V D LP + +R+ AE
Sbjct: 163 KSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLV-----DGLPKIYGEGSSRRFAE 217
Query: 72 QSAA 75
Q+AA
Sbjct: 218 QAAA 221
>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
Length = 245
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+RLQE QK+ TP YE + +EGP H+ F V V + + G ++K AEQ A
Sbjct: 163 YKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKEDVWAQGRG-RSKKNAEQMA 221
Query: 75 AEVAL 79
A+ AL
Sbjct: 222 AKNAL 226
>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 231
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE Q P YE I E GP H+ F V D++ + N+K A+Q A
Sbjct: 160 YKSLLQELTQATDGKAPTYEIIDETGPDHDKTFHCRVSAGDIQAEGSGK--NKKTAQQDA 217
Query: 75 AEVAL 79
A AL
Sbjct: 218 AHKAL 222
>gi|407275772|ref|ZP_11104242.1| ribonuclease III [Rhodococcus sp. P14]
Length = 253
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV 53
+K+ LQE + G+ P YE GP H+ F +TVIV
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIV 210
>gi|326935945|ref|XP_003214024.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
[Meleagris gallopavo]
Length = 852
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEV 77
S L EY QK+G ++GPSH+P F V + D + ++ G ++K A+Q AAEV
Sbjct: 259 SVLMEYGQKSGNTIEFLLLSQDGPSHDPRFSYCVKMGDQIFPAVVG-NSKKGAKQMAAEV 317
Query: 78 AL 79
A+
Sbjct: 318 AV 319
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE AG+ P Y+ GP H F +TV+V + + G +K AEQ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNG-TTKKEAEQKAA 213
Query: 76 EVA 78
E A
Sbjct: 214 ETA 216
>gi|386856052|ref|YP_006260229.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
gi|379999581|gb|AFD24771.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
Length = 149
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAE 76
K L Q G+ TPV+E EGP H+ FR+ V V G ++K AE++AAE
Sbjct: 4 KGDLIARTQTLGLGTPVFEAEAEGPPHDRTFRAQVSVGGEVLGQGEG-RSKKDAERAAAE 62
Query: 77 VALVELAKLGKVNECISQPIHETG 100
VAL L G ++ + E G
Sbjct: 63 VALRVLNGRGDTDDSEDPQVAEEG 86
>gi|418056705|ref|ZP_12694757.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
gi|353209322|gb|EHB74727.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
Length = 235
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+AQ G+ P Y + ++GP H P F + VI+ R + +++ AEQ+AA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAG-RAPAQGEGASKRIAEQAAA 219
Query: 76 EVALVELAKLGKVNEC 91
L + G++ +
Sbjct: 220 TALLTREGEGGRLGDV 235
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
K +LQ Q+ +A+P YQ R +SG SC V G ++IG A++KK+AE
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTR---SSGSQFISCVVVRGK-KFIGEPAESKKQAE 1115
>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
gi|384207191|ref|YP_005592913.1| ribonuclease III [Borrelia afzelii PKo]
gi|123341290|sp|Q0SMF0.1|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
gi|342857075|gb|AEL69923.1| ribonuclease III [Borrelia afzelii PKo]
Length = 245
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
Length = 220
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 13 CYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGF-FNRKAA 70
Y FKS++QE Q P Y ++E GP H+ F+ + ++D++ G+ ++K A
Sbjct: 141 AYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELTINDLQ---TVGYGKSKKLA 197
Query: 71 EQSAAEVALVELA 83
EQ AA A LA
Sbjct: 198 EQDAASKAFDILA 210
>gi|406836554|ref|ZP_11096148.1| RNAse III [Schlesneria paludicola DSM 18645]
Length = 205
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF--NRKAAEQ 72
+KS LQ+ QK TP+Y+ + E GP H F+ +V D+ P + N+K AEQ
Sbjct: 122 YKSLLQQLVQKNQRGTPLYQLLDECGPDHSKCFKIAAVVG---IDAFPPAWGPNKKEAEQ 178
Query: 73 SAAEVALVEL 82
AAE A L
Sbjct: 179 RAAENAWCLL 188
>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
Length = 235
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+AQ G+ P Y + ++GP H P F + VI+ R + +++ AEQ+AA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAG-RAPAQGEGASKRIAEQAAA 219
Query: 76 EVALVELAKLGKVNEC 91
L + G++ +
Sbjct: 220 TALLTREGEGGRLGDA 235
>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
Length = 239
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P Y+ +KE GP H F + + D Y + G ++K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKG-KSKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYYALQKL 235
>gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster]
Length = 460
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K++L +A K G P YET + FRS D R+ S N+K A
Sbjct: 377 SDNHLPKTQLYVHAVKTGKSPPAYET----QQCDKLFRSICTYDGQRFSSSFWEKNKKQA 432
Query: 71 EQSAAEVALVELAKL 85
EQ AA VAL+ L +L
Sbjct: 433 EQGAALVALLHLGQL 447
>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
gi|28201878|sp|Q8KAN7.1|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
Length = 272
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLP---GFFNRKA 69
Y +KSRL EY Q +P P+Y I +EG HE F V +V + P G RK
Sbjct: 188 YNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTF-----VVEVSCNGQPLGRGTAPRKK 242
Query: 70 -AEQSAAEVAL--VELAKLGKVNE 90
AEQ AA+ A+ +E LG +NE
Sbjct: 243 DAEQLAAKEAMKRLESGDLGNLNE 266
>gi|420153945|ref|ZP_14660877.1| ribonuclease III [Actinomyces massiliensis F0489]
gi|394756355|gb|EJF39456.1| ribonuclease III [Actinomyces massiliensis F0489]
Length = 278
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE A G+ P YE GP HE F + IVD G ++K AE AA
Sbjct: 178 WKTSLQELAAAHGLGNPRYEVDSVGPDHERIFTAQAIVDGAVRGEGTG-TSKKLAEHKAA 236
Query: 76 EVA 78
E A
Sbjct: 237 EAA 239
>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|365992396|ref|NP_212839.2| ribonuclease III [Borrelia burgdorferi B31]
gi|387826338|ref|YP_005805791.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|387827603|ref|YP_005806885.1| ribonuclease III [Borrelia burgdorferi N40]
gi|384872624|sp|O51648.2|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
gi|356609400|gb|AAC67040.2| ribonuclease III [Borrelia burgdorferi B31]
Length = 245
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQS 169
AL A+++
Sbjct: 235 VALKAMEN 242
>gi|386389600|ref|ZP_10074414.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695370|gb|EIG25932.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 222
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T V +V + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPEYEVMDIKGEAHNQTFKVTCKVKNVDEVFIGIGTSRRKAEQNAA 213
Query: 76 EVALVELAK 84
E L L K
Sbjct: 214 EKVLNVLIK 222
>gi|455793316|gb|EMF45018.1| ribonuclease III [Leptospira interrogans serovar Lora str. TE 1992]
Length = 250
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRD-QWEASGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+KS LQE QK P YE K GP H+ F +V ++ Y L G +K AEQS
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSG-KTKKEAEQSV 230
Query: 75 AEVA 78
A+VA
Sbjct: 231 AKVA 234
>gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus
labiatus]
Length = 552
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
F L +Y QK G+ E GP H+ F VI+D + G ++ +++
Sbjct: 9 FFMEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEG----RSKKEAK 64
Query: 75 AEVALVELAKLGKVNECISQPIHET----------GLCKNLLQEYAQKMNYAIPLYQCRK 124
A V + L K N+ +S P+ T G L+ AQK + QC
Sbjct: 65 NAAAKVAVEILNKENKAVS-PLSLTPTDSSERSSIGNYIGLINRIAQKERLTVNYEQCAS 123
Query: 125 DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQL 184
+G F ++G Y G TK+EA+ AA+ A L I+ S E S + + +
Sbjct: 124 G-VNGPEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQIRKS-EETSVKADSTSSV 181
Query: 185 TVLPSRKRGPEVANNP 200
+ P ++ NNP
Sbjct: 182 SFTPV----CDIQNNP 193
>gi|420412236|ref|ZP_14911365.1| ribonuclease III [Helicobacter pylori NQ4228]
gi|393027894|gb|EJB28982.1| ribonuclease III [Helicobacter pylori NQ4228]
Length = 239
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P Y+ +KE GP H F + + D Y + G ++K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKG-KSKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYYALQKL 235
>gi|440900896|gb|ELR51925.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Bos grunniens mutus]
Length = 533
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 8 SGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
+G S C+ + L +Y QK + E K GP H F VI+DD Y G
Sbjct: 3 TGRSPCF-YIEELNKYQQKNCVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPQTEG---- 57
Query: 68 KAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNL------------LQEYAQKMNY 115
++ +++ A + L + K + +S + L N+ L +QK N
Sbjct: 58 RSKKEAKNAAAKLALEIINKDRKSVS---FSSQLTTNIPEGPPIENYIGRLNTISQKKNL 114
Query: 116 AIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169
+ +C K + G F +IG Y G TK+EA+ AA+ A I+S
Sbjct: 115 CVTYEEC-KSKGDGPEGFHYICKIGQEEYGSGVGSTKQEAKQLAAKLAYEKIES 167
>gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
25986]
gi|133776619|gb|EBA40439.1| ribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 241
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVR 57
KS LQE Q G P Y+ + EGP+H P F + V++D +R
Sbjct: 162 KSFLQECVQADGHEPPAYKLVGSEGPAHAPTFTAVVLIDGIR 203
>gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7]
gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7]
Length = 152
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQE QK G Y+ +K EGP H F + V V++ + G+ ++K +EQSA
Sbjct: 81 YKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVNNKVLGNGTGY-SKKESEQSA 139
Query: 75 AEVALVELAK 84
A+ AL L K
Sbjct: 140 AKKALKGLEK 149
>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
Length = 245
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYIQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQ 168
AL A++
Sbjct: 235 VALKAME 241
>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 234
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+RLQE QK+ TP YE + +EGP H+ F V V + + G ++K AEQ A
Sbjct: 163 YKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKEDVWAQGRG-RSKKNAEQMA 221
Query: 75 AEVAL 79
A+ AL
Sbjct: 222 AKNAL 226
>gi|356511271|ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1180
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 3 TNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLP 62
TN GV+ +K+ LQ + +AG +P Y+T KE +++ FRSTVI + + + P
Sbjct: 1070 TNSKTGGVAEEKNYKNHLQAFLNRAGHDSPTYKT-KELKNNQ--FRSTVIFNGLNFVGQP 1126
Query: 63 GFFNRKAAEQSAAEVALVEL 82
++K AE+SAA AL+ L
Sbjct: 1127 C-SSKKLAEKSAAAEALLWL 1145
>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium gilvum Spyr1]
gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium gilvum Spyr1]
Length = 234
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 48 RSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGL-CKNLL 106
+S+++ D V +SL G + +A EV L + L + P GL K+ L
Sbjct: 114 KSSILADGV--ESLLGAIYLEHGAVAAREVILRLFSDL-----LDTAPTLGAGLDWKSSL 166
Query: 107 QEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA 166
QE + P Y +F+ V I + + G +TKKEAE+KAA A A
Sbjct: 167 QELTASLALGAPSYHVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELKAASAAWNA 226
Query: 167 IQ 168
+Q
Sbjct: 227 LQ 228
>gi|422446986|ref|ZP_16523724.1| ribonuclease III [Propionibacterium acnes HL027PA1]
gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1]
Length = 265
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQEY + G P YE + GP H + + VD + + G N+K AEQ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGFGPDHNRRYCARANVDGRLHAAYTG-HNKKEAEQGAA 250
Query: 76 EVALVEL 82
A+ L
Sbjct: 251 RRAVSAL 257
>gi|406928715|gb|EKD64463.1| hypothetical protein ACD_50C00380G0002, partial [uncultured
bacterium]
Length = 158
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS+ QE AQ TP Y+ I+E GP H+ F ++ D +Y G +++ AEQ+AA
Sbjct: 82 KSKFQEIAQAKFNLTPTYDLIEESGPGHDKNFVMAAMIGDKKYGEGKG-GSKQQAEQNAA 140
Query: 76 EVAL 79
AL
Sbjct: 141 TDAL 144
>gi|420422011|ref|ZP_14921089.1| ribonuclease III [Helicobacter pylori NQ4110]
gi|393038529|gb|EJB39563.1| ribonuclease III [Helicobacter pylori NQ4110]
Length = 239
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q P Y+ +KE GP H F + + D Y + G ++K AEQ
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKG-KSKKEAEQQC 227
Query: 75 AEVALVEL 82
A AL +L
Sbjct: 228 AYYALQKL 235
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE + G+ P YE GP H+ F +TVI+ G ++K AEQ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIG-RSKKEAEQKAA 231
Query: 76 EVALVELAKLG 86
A L+ G
Sbjct: 232 STAWNALSDAG 242
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y + GP HE F + V V Y + G ++K AEQ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTG-RSKKEAEQQAA 228
Query: 76 EVALVEL 82
E A + +
Sbjct: 229 ESAWLSI 235
>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 221
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY Q G+P P Y+ +E GP H F+ D Y ++ +RK AEQ AA
Sbjct: 153 KTQLQEYLQGRGLPLPDYQITEESGPEHAREFQIEATSGD--YRAIAHGSSRKKAEQQAA 210
Query: 76 EVALVE 81
L +
Sbjct: 211 ADLLAQ 216
>gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster]
gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster]
gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster]
Length = 473
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAA 70
S+ ++ K++L +A K G P YET + FRS D R+ S N+K A
Sbjct: 390 SDNHLPKTQLYVHAVKTGKSPPAYET----QQCDKLFRSICTYDGQRFSSSFWEKNKKQA 445
Query: 71 EQSAAEVALVELAKL 85
EQ AA VAL+ L +L
Sbjct: 446 EQGAALVALLHLGQL 460
>gi|398338382|ref|ZP_10523085.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
Length = 285
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K++LQEY+QK P+Y T E GP H F+ V + D ++++ ++K+AEQ+A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRD-QWEATGSGVSKKSAEQNA 235
Query: 75 AE 76
A+
Sbjct: 236 AK 237
>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
Length = 245
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCT-VEIGDIRYIGGAAKTKKEAEIKAAR 161
K+LLQEY QK P Y+ K+ + C + +G+ G K+KKEAE++AA
Sbjct: 175 KSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAE 234
Query: 162 TALLAIQS 169
AL A+++
Sbjct: 235 VALKAMEN 242
>gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
gi|189043308|sp|A8LLD9.1|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
Length = 229
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWF 47
K+ LQE+AQ G+P P Y E+ + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPAYIESARSGPDHAPVF 190
>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
Length = 236
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQE+A P Y I + GP H P F V++D ++ S G +R+ AE++AA
Sbjct: 168 KSFLQEWAVANAKRPPAYNLIERRGPDHAPVFTMEVVIDGLQPQSATG-KSRQEAEKTAA 226
Query: 76 EVALVELAKL 85
+AL+E +L
Sbjct: 227 -LALIEREQL 235
>gi|407799645|ref|ZP_11146523.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
gi|407058122|gb|EKE44080.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
Length = 227
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 17 KSRLQEYAQKAGIPTPVY-ETIKEGPSHEPWFRSTVIVDDVRYDS----LPGFFNRKAAE 71
K+ LQE+AQ G P Y E ++GP H P F T+ +VR DS +++ AE
Sbjct: 159 KTALQEWAQARGQTPPAYVEVARDGPDHAPLF--TI---EVRLDSGQSARAAAKSKRMAE 213
Query: 72 QSAAEVALVEL 82
QSAA L L
Sbjct: 214 QSAARALLTAL 224
>gi|149698252|ref|XP_001503088.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
isoform 2 [Equus caballus]
Length = 566
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 18 SRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEV 77
S L ++AQ + + ET+ G P+F +VD ++Y + G N+K + +AA++
Sbjct: 99 SALHQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLG-LNKKESRSNAAKL 157
Query: 78 ALVELAKL 85
AL EL +L
Sbjct: 158 ALDELLQL 165
>gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114]
gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11]
gi|423686829|ref|ZP_17661637.1| ribonuclease III [Vibrio fischeri SR5]
gi|75431522|sp|Q5E314.1|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114]
gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11]
gi|371494897|gb|EHN70495.1| ribonuclease III [Vibrio fischeri SR5]
Length = 223
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q P P Y K +G +H F IV + + +R+ AEQSAA
Sbjct: 156 KTRLQEYLQGRRKPLPTYTVTKIKGEAHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAA 215
Query: 76 EVALVEL 82
++AL +L
Sbjct: 216 DIALGQL 222
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAE 156
K +LQ Q+ +A+P YQ R +SG SC V G ++IG A++KK+AE
Sbjct: 949 KGILQTLVQRAGFAVPTYQTR---SSGSQFISCVVVRGK-KFIGEPAESKKQAE 998
>gi|336117263|ref|YP_004572030.1| ribonuclease III [Microlunatus phosphovorus NM-1]
gi|334685042|dbj|BAK34627.1| ribonuclease III [Microlunatus phosphovorus NM-1]
Length = 233
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY 58
+K+ LQE A G PVY + GP H F +TV+V D Y
Sbjct: 166 WKTSLQEVASLGGHGVPVYVVSESGPDHAKTFSATVVVGDQTY 208
>gi|427794889|gb|JAA62896.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 475
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 90 ECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAA 149
E I P ++ +C +L EY Q P Y+ ++ E+S + + TV IG++ Y G
Sbjct: 199 EFIMNPSGKSNVC--ILHEYVQHAMKTQPQYKFKELESSS-MPYKATVVIGEMEYGSGFG 255
Query: 150 KTKKEAEIKAARTAL 164
+KK+A+ +AA+ AL
Sbjct: 256 SSKKQAKSEAAKAAL 270
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 37.7 bits (86), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQEY QK P Y + K GP H+ F V V+ + G N+K AEQ A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPASGA-NKKQAEQMA 234
Query: 75 AEVALVELAK 84
A++A +L K
Sbjct: 235 AKLAYDQLVK 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,045,597,706
Number of Sequences: 23463169
Number of extensions: 237573012
Number of successful extensions: 572715
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 1254
Number of HSP's that attempted gapping in prelim test: 570119
Number of HSP's gapped (non-prelim): 3173
length of query: 418
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 273
effective length of database: 8,957,035,862
effective search space: 2445270790326
effective search space used: 2445270790326
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 78 (34.7 bits)