BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014809
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 71/100 (71%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M + + SGVSNCYVFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+S
Sbjct: 4 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 63
Query: 61 LPGFFNRXXXXXXXXXXXXXXXXXXGKVNECISQPIHETG 100
LPGFFNR ++++C+SQP+HETG
Sbjct: 64 LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETG 103
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY 144
K+ LQEYAQK P+Y+ K+ S K F TV + +RY
Sbjct: 20 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRY 61
>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 96 IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXX 154
+HETGLCKNLLQEYAQKMNYAIPLYQC+K E G+V QF+CTVEIG I+Y
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 155 XXXXXXXXXLLAIQS 169
LLAIQS
Sbjct: 63 AEISAGRTALLAIQS 77
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
+VFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+SLPGFFNR
Sbjct: 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR 56
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRY 144
K+ LQEYAQK P+Y+ K+ S K F TV + +RY
Sbjct: 6 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRY 47
>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 82.0 bits (201), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/71 (60%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV-QFSCTVEIGDIRYXXXXXXXXXXXXXX 158
GLCKNLLQEYAQKMNYAIPLYQC+K E G+V QF+CTVEIG I+Y
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 159 XXXXXLLAIQS 169
LLAIQS
Sbjct: 64 AGRTALLAIQS 74
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
From Mycobacterium Tuberculosis
Length = 242
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
+K+ LQE G+ P Y GP H+ F + V+V D Y S
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS 208
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVD 54
+K++LQE Q TP YET++ GP H F +++D
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLD 218
>pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of
The Protein Kinase Pkr Reveals The Molecular Basis Of
Its Dsrna-Mediated Activation
Length = 179
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVD 54
F L Y QK G+ E GP H+ F VI+D
Sbjct: 14 FFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIID 53
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 89 NECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIG 140
++C S P G CK+ LQ Y + + +P ++ R E Q C E G
Sbjct: 48 DQCASSPCQNGGSCKDQLQSY---ICFCLPAFEGRNCETHKDDQLICVNENG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,916,384
Number of Sequences: 62578
Number of extensions: 397103
Number of successful extensions: 756
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 23
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)