BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014809
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/211 (67%), Positives = 167/211 (79%), Gaps = 3/211 (1%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
M + + SGVSNCYVFKSRLQEYAQK +PTPVYE +KEGPSH+ F+STVI+D VRY+S
Sbjct: 1 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60
Query: 61 LPGFFNRKAAEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLY 120
LPGFFNRKAAEQSAAEVAL ELAK ++++C+SQP+HETGLCKNLLQEYAQKMNYAIPLY
Sbjct: 61 LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120
Query: 121 QCRKDEASGKV-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSA 179
QC+K E G+V QF+CTVEIG I+Y G A +TKK+AEI A RTALLAIQS N
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANY- 179
Query: 180 GNTQLTVLPSRKRGPEVANNPEETVNVPKAK 210
NTQLTVLP K+ + A +ETV KA+
Sbjct: 180 -NTQLTVLPCEKKTIQAAIPLKETVKTLKAR 209
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/194 (65%), Positives = 147/194 (75%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 KRVGKEVEKMPIET 216
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 146/194 (75%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQK G+ TP Y T KEGPSHEP F+STV++++ YDSLPGFFNRKA
Sbjct: 28 VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 88 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKS-ASG 145
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 202
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 203 KRVGKEVEKRPIET 216
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 145/194 (74%), Gaps = 5/194 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKA 69
V NCYVFKSRLQEYAQKAG+ TP Y T KEGPSHEP F+STV++++ Y SLPGF NRKA
Sbjct: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
Query: 70 AEQSAAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASG 129
AEQSAAEVAL+E+ K N I + ETGLCKNLLQEYAQKMNYAIP Y C K ASG
Sbjct: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTKP-ASG 147
Query: 130 KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPS 189
F CTVEIG I+YIG AA+TKK+AEIKAARTALLAIQ + G++ G T+ V+P
Sbjct: 148 LAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS---EGSANGATKYIVVPG 204
Query: 190 RKRGPEVANNPEET 203
++ G EV P ET
Sbjct: 205 KRVGKEVEKRPIET 218
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDS 60
+P N V + K+ LQEYAQK P Y K P F TV + ++Y
Sbjct: 106 IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIG 164
Query: 61 LPGFFNRKAAEQSAAEVALVEL 82
+K AE AA AL+ +
Sbjct: 165 A-AARTKKDAEIKAARTALLAI 185
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S P F + + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL EL+K G + ++ + ETG+ KNLLQE A + +P+Y + F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
+CTVE+ + + G KTKK+A+ AA A
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAW 150
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQ YAQK G P Y+TI+EGP H F+S V VD ++S F K AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 76 EVALVELAKLGKVNECIS-QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
++AL+ L + +E + QP+ KNLLQE AQK +++P+Y D + F
Sbjct: 147 KLALMSLPQEASSSEQVPVQPLSY----KNLLQELAQKHGFSLPVYSTTSDGSVQVPMFK 202
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164
TV D + G A TKK+AE+ AAR A
Sbjct: 203 STVVFQDGSFQGEPANTKKQAEMNAARVAF 232
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS- 73
++KSRLQE Q+ P Y GP+H P F +TV V+ V + + P R A E
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRT-PEDAARSAKEAHN 59
Query: 74 -AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQ 132
AA+ A L+ L K+ LQ YAQK +P YQ ++ +
Sbjct: 60 IAAKAAFDHLSSLPLPPPPPPS--ENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASR 117
Query: 133 FSCTVEI-GDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
F V + G T KEAE AA+ AL+++ AS
Sbjct: 118 FKSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEAS 158
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F++TV + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE AQ++ +P Y + + F+
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGN 177
TVE+ I + G AK KK+AE AA A +++ A E S +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSS 163
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F++TV + +D + AE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G + ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170
TVE+ + + G AKTKK AE AA A +++ S
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQS 156
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y +EGP H P F+++V + ++S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEVAL L+ G ++ + ETG+ KNLLQE A + +P+Y + FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
CTVE+ + + G +AKTKK+AE AA A +++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
++K++LQE AQ++ P Y I+EGP H P F+++V + ++S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFS 134
AEV+L L+ ++ + ETG+ KNLLQE A + +P+Y + + FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 135 CTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172
CTVE+ + + G +AKTKK+AE AA A +++ +S
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSS 158
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQS 73
+V+K +LQ YA + + PVY +EGP H P FR V + S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 74 AAEVALVELAKLGKVNECISQPIHETGL---CKNLLQEYAQKMNYAIPLYQCRKDEASGK 130
AA++A+ L P G+ KNLLQE AQK + +P Y S
Sbjct: 63 AAKIAVASLT-----------PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHA 111
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSGNSAGNTQLTVLPSR 190
F+ TVE + G AKTKK AE+ AA+ A ++I++ S +G+ LPS
Sbjct: 112 PTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSP-------TLPSE 164
Query: 191 KR---GPEVANNPEETVNVPKAK 210
++ V ++P+E + P +K
Sbjct: 165 RQEDVNSNVKSSPQEIHSQPSSK 187
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNR-KAAEQS 73
++K++LQE AQ++ P Y ++EGP H P F++ V + +++S PGFF + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFES-PGFFTTLRQAEHA 59
Query: 74 AAEVALVELAKLGKVNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQF 133
AAEVAL LA+ G ++ + ETG+ KNLLQE AQ++ +P Y + F
Sbjct: 60 AAEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVF 119
Query: 134 SCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168
+CTVE+ I + G AK KK+AE AA A +++
Sbjct: 120 TCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLR 154
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+KS+LQEY Q+A P+Y T +G H+ F+STV+VD + S K AEQ AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 76 EVALVELAKLGK-------VNECISQPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEAS 128
+VA L + + V E I Q + K++L EY K P Y K E S
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQ---DVVFSKSILHEYTTKTKTDQPEYSVTKTEGS 155
Query: 129 GKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167
+ +V Y GGAA+ KK+AE KAAR A+ ++
Sbjct: 156 V-TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|Q7UGZ7|RNC_RHOBA Ribonuclease 3 OS=Rhodopirellula baltica (strain SH1) GN=rnc PE=3
SV=2
Length = 266
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
KS LQ++AQ+ TPVY+ I+E GP H F +VDD R+ G N+K AEQ AA
Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWG-NNKKDAEQRAA 245
Query: 76 EVALVEL 82
AL EL
Sbjct: 246 ANALAEL 252
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQC-RKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K++LQ++AQ+ A P+Y+ R+ + F + D R+ KK+AE +AA
Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAA 246
Query: 162 TALLAIQSS 170
AL + ++
Sbjct: 247 NALAELHNA 255
>sp|Q6N6C1|RNC_RHOPA Ribonuclease 3 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=rnc PE=3 SV=1
Length = 272
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 16/71 (22%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF-------FNRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR VI LPG +++
Sbjct: 198 KTVLQEWAQARGLPTPVYREVERTGPHHDPQFRVAVI--------LPGLEPAEGLGGSKR 249
Query: 69 AAEQSAAEVAL 79
AAE+ AA L
Sbjct: 250 AAEKVAASAML 260
>sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum (strain USDA 110) GN=rnc
PE=3 SV=2
Length = 250
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFF-------NRK 68
K+ LQE+AQ G+PTPVY + + GP H+P FR V VD LPG +++
Sbjct: 177 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFR--VAVD------LPGLAPAEGIGGSKR 228
Query: 69 AAEQSAAEVALVELAKLGKVNE 90
AAE+ AA V ++E +G N+
Sbjct: 229 AAEKVAASV-MIEREGVGGGND 249
>sp|C0R4Q8|RNC_WOLWR Ribonuclease 3 OS=Wolbachia sp. subsp. Drosophila simulans (strain
wRi) GN=rnc PE=3 SV=1
Length = 232
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELMLEKIGK 228
>sp|Q73FT3|RNC_WOLPM Ribonuclease 3 OS=Wolbachia pipientis wMel GN=rnc PE=3 SV=1
Length = 232
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F +V ++D Y + ++K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELMLEKIGK 228
>sp|B3CMS0|RNC_WOLPP Ribonuclease 3 OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=rnc PE=3 SV=1
Length = 230
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ Q+ +P P YE +K+ GP+H P F +V ++ YD + ++K AEQ A
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIES--YDKVSACAPSKKIAEQKA 218
Query: 75 AEVALVELAK 84
AE+ L ++ K
Sbjct: 219 AELILEKIKK 228
>sp|Q52698|RNC_RHOCA Ribonuclease 3 OS=Rhodobacter capsulatus GN=rnc PE=1 SV=1
Length = 228
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIV 53
K+ LQE+AQ G+P P YET+ ++GP H P FR V++
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVL 196
>sp|Q03963|E2AK2_MOUSE Interferon-induced, double-stranded RNA-activated protein kinase
OS=Mus musculus GN=Eif2ak2 PE=1 SV=2
Length = 515
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y Q G+ E GP H+ F V++D+ + G +++ A +A
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGR-SKQEARNAA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN---LLQEYAQKMNYAIPLYQCRKDEASGKV 131
A++A+ L KV +C + + N L+ +AQK ++ QC + +
Sbjct: 67 AKLAVDILDNENKV-DCHTSASEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQ- 124
Query: 132 QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELSG 176
+F C +IG Y G+ TK+EA+ AA+ A + S + +G
Sbjct: 125 RFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>sp|Q5HA74|RNC_EHRRW Ribonuclease 3 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rnc
PE=3 SV=1
Length = 227
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 157 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 215
Query: 76 EVALVEL 82
+ L ++
Sbjct: 216 SLMLAKI 222
>sp|Q5FGH0|RNC_EHRRG Ribonuclease 3 OS=Ehrlichia ruminantium (strain Gardel) GN=rnc PE=3
SV=1
Length = 227
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+AQ G P P Y I K GP H P F V ++ G N+K AEQ AA
Sbjct: 157 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG-HNKKLAEQKAA 215
Query: 76 EVALVEL 82
+ L ++
Sbjct: 216 SLMLAKI 222
>sp|O69469|RNC_MYCLE Ribonuclease 3 OS=Mycobacterium leprae (strain TN) GN=rnc PE=3 SV=1
Length = 238
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
+K+ LQE G+ P Y GP H+ F + V+V D Y S G ++K AEQ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIG-HSKKEAEQKAA 220
Query: 76 EVALVELAKLGKVNEC 91
A L LG V +
Sbjct: 221 SAAWKALDVLGGVGKT 236
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
K LQE +P Y +F+ V + D Y G +KKEAE KAA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQKAAS 221
Query: 162 TALLAIQ 168
A A+
Sbjct: 222 AAWKALD 228
>sp|Q8RGX3|RNC_FUSNN Ribonuclease 3 OS=Fusobacterium nucleatum subsp. nucleatum (strain
ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=rnc
PE=3 SV=1
Length = 234
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FKS LQEY QK P YE + E GP H F VIV + + ++ N+K AEQ +
Sbjct: 161 FKSILQEYVQKEFKTVPTYELVAERGPDHMKEFEIQVIVGNYKEKAVAR--NKKKAEQLS 218
Query: 75 AEVALVELAKLG-KVNECI 92
A+ + KLG K NE +
Sbjct: 219 AKALCI---KLGVKYNEAL 234
>sp|Q4FLS9|RNC_PELUB Ribonuclease 3 OS=Pelagibacter ubique (strain HTCC1062) GN=rnc PE=3
SV=1
Length = 222
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQEY+ K P+Y+ I GP H+P F+ V + + ++ + G ++K AEQ+AA
Sbjct: 154 KTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTAEG-TSKKDAEQNAA 212
Query: 76 EVALVELAK 84
+ L ++ K
Sbjct: 213 SLCLQDIFK 221
>sp|Q3SRB3|RNC_NITWN Ribonuclease 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=rnc PE=3 SV=1
Length = 266
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTV 51
K+ LQE+AQ G+PTPVY + + GP H+P FR V
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAV 233
>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rnc PE=3 SV=1
Length = 243
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 17 KSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFF-NRKAAEQSA 74
K+ LQE+ QK +P P YE +K+ GP+H P F ++ +++ Y + ++K AEQ A
Sbjct: 171 KTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIEN--YGKVFACASSKKVAEQKA 228
Query: 75 AEVAL 79
AE+ L
Sbjct: 229 AELML 233
>sp|B4RCU4|RNC_PHEZH Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc
PE=3 SV=1
Length = 238
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K++LQE+ Q G+P P YE + +EGP H P F V V + G +R+AAE++AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEG-RSRQAAEKAAA 221
Query: 76 EVALV--ELAKLGKVNE 90
+ L+ E + GKV E
Sbjct: 222 QCMLLKREGPEPGKVGE 238
>sp|Q8XJN8|RNC_CLOPE Ribonuclease 3 OS=Clostridium perfringens (strain 13 / Type A)
GN=rnc PE=3 SV=1
Length = 237
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK+RLQE QK G VY +K EGP H F + +++++ G F++K +EQ+A
Sbjct: 161 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIMGQGVG-FSKKESEQNA 219
Query: 75 AEVALVELAKL 85
A+ AL L ++
Sbjct: 220 AKAALQRLGEI 230
>sp|B8CQJ5|RNC_SHEPW Ribonuclease 3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877)
GN=rnc PE=3 SV=1
Length = 225
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ QK P P+Y+ + EG +HE F +V+D+R + +R+ AEQSAA
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
L EL K
Sbjct: 217 AQVL-ELIK 224
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRKDEASGKVQ-FSCTVEIGDIRY-IGGAAKTKKEAEIKAA 160
K LLQE+ QK +P+Y+ E Q F+ + D+R + G A ++++AE AA
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 161 RTALLAIQ 168
L I+
Sbjct: 217 AQVLELIK 224
>sp|B2TJ22|RNC_CLOBB Ribonuclease 3 OS=Clostridium botulinum (strain Eklund 17B / Type
B) GN=rnc PE=3 SV=1
Length = 232
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE +K EGP H F + VI+++ G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEILIQYELVKYEGPPHRRKFFTNVIINEKVMGIGEG-YSKKEAEQNA 219
Query: 75 AEVALVELAK 84
A+ AL L K
Sbjct: 220 AKEALKRLEK 229
>sp|Q7VRR0|RNC_BLOFL Ribonuclease 3 OS=Blochmannia floridanus GN=rnc PE=3 SV=1
Length = 232
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P+Y + +G +H+ F V ++Y + +R+ AEQ AA
Sbjct: 160 KTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAA 219
Query: 76 EVALVELAKL 85
E AL L ++
Sbjct: 220 ENALKFLIEI 229
>sp|B2V4D6|RNC_CLOBA Ribonuclease 3 OS=Clostridium botulinum (strain Alaska E43 / Type
E3) GN=rnc PE=3 SV=1
Length = 232
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE +K EGP H F + VI+++ G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEILIQYELLKYEGPPHRRKFFTNVIINEKVMGIGEG-YSKKEAEQNA 219
Query: 75 AEVALVELAK 84
A+ AL L K
Sbjct: 220 AKEALKRLEK 229
>sp|A6LSM2|RNC_CLOB8 Ribonuclease 3 OS=Clostridium beijerinckii (strain ATCC 51743 /
NCIMB 8052) GN=rnc PE=3 SV=1
Length = 232
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
FK++LQE QK G YE K EGP H F + V++D G +++K AEQ+A
Sbjct: 161 FKTKLQELLQKDGEVVIQYELTKFEGPPHRRKFFTNVVIDKKLMGEGSG-YSKKEAEQNA 219
Query: 75 AEVAL 79
A+ AL
Sbjct: 220 AKQAL 224
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNR 67
S+ FKS+LQE+ Q+ + YE ++E GP+H F S V++++ G ++
Sbjct: 184 AFSHMMDFKSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNETLGVGTG-RSK 242
Query: 68 KAAEQSAAEVALVELAK 84
K AEQ AA+ AL+ L++
Sbjct: 243 KEAEQHAAQQALITLSQ 259
>sp|B0TIV7|RNC_SHEHH Ribonuclease 3 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rnc
PE=3 SV=1
Length = 225
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE+ QK P PVY+ + EG +HE F IV+D+ + +R+ AEQSAA
Sbjct: 157 KTLLQEHLQKFRKPLPVYKVVHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
++EL K
Sbjct: 217 -AQVLELMK 224
>sp|A8I3B5|RNC_AZOC5 Ribonuclease 3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rnc PE=3 SV=1
Length = 235
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGF 64
K+ LQE+AQ G+P PVY + + GP H P FR V VD LPG
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFR--VAVD------LPGL 202
>sp|A8H1C7|RNC_SHEPA Ribonuclease 3 OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=rnc PE=3 SV=1
Length = 225
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQEY QK P PVY EG +HE F IV+D+ + +R+ AEQSAA
Sbjct: 157 KTLLQEYLQKYRKPLPVYRVAHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 76 EVALVELAK 84
++EL K
Sbjct: 217 -AQVLELIK 224
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRK 68
S+ FKS+LQE Q+ GI Y ++E GP+H F S V ++ G ++K
Sbjct: 168 FSHVMDFKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGK-SKK 226
Query: 69 AAEQSAAEVALVELAKLGK 87
AEQ AA++AL +L +GK
Sbjct: 227 EAEQHAAQMALQKLKTIGK 245
>sp|Q2GFE4|RNC_EHRCR Ribonuclease 3 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rnc
PE=3 SV=1
Length = 226
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+ LQE Q +P P Y TI K GP H P F V + + G N+K AEQ AA
Sbjct: 156 KTILQELVQGKRLPAPAYHTIDKSGPDHNPTFTVEVRIPSYQAIQATG-HNKKLAEQKAA 214
Query: 76 EVAL 79
+ L
Sbjct: 215 SLML 218
>sp|Q9Z9C7|RNC_CHLPN Ribonuclease 3 OS=Chlamydia pneumoniae GN=rnc PE=3 SV=1
Length = 237
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 103 KNLLQEYAQKMNYAIPLYQCRK-DEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAAR 161
KNLLQ++ QK +P+YQ +A G V + V + + G A +KKEAE AA+
Sbjct: 162 KNLLQQFTQKQFRVLPVYQSTAVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQ 221
Query: 162 TAL 164
AL
Sbjct: 222 QAL 224
>sp|B9KSA7|RNC_RHOSK Ribonuclease 3 OS=Rhodobacter sphaeroides (strain KD131 / KCTC
12085) GN=rnc PE=3 SV=1
Length = 229
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190
>sp|Q3J5W1|RNC_RHOS4 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17023 /
2.4.1 / NCIB 8253 / DSM 158) GN=rnc PE=3 SV=1
Length = 229
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190
>sp|A3PGF8|RNC_RHOS1 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=rnc PE=3 SV=1
Length = 229
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190
>sp|A4WVP5|RNC_RHOS5 Ribonuclease 3 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=rnc PE=3 SV=1
Length = 229
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 17 KSRLQEYAQKAGIPTPVYETI-KEGPSHEPWF 47
K+ LQE+AQ G+P P YE + + GP H P F
Sbjct: 159 KTALQEWAQARGLPPPCYEAVDRSGPDHAPIF 190
>sp|C0MCR4|RNC_STRS7 Ribonuclease 3 OS=Streptococcus equi subsp. zooepidemicus (strain
H70) GN=rnc PE=3 SV=1
Length = 230
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 16 FKSRLQEYAQKAGIPTPVYETIKE-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+K+ LQE Q G Y+ I E GP+H F V+VD+ R G ++K AEQ A
Sbjct: 161 YKTCLQELLQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTG-RSKKLAEQDA 219
Query: 75 AEVALVELAKL 85
A+ AL +L+++
Sbjct: 220 AKNALAQLSEV 230
>sp|Q63184|E2AK2_RAT Interferon-induced, double-stranded RNA-activated protein kinase
OS=Rattus norvegicus GN=Eif2ak2 PE=1 SV=1
Length = 513
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSA 74
+ +L +Y+Q + E GP H+ F VI+++ + G +++ A+ +A
Sbjct: 8 FYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGR-SKQEAKNNA 66
Query: 75 AEVALVELAKLGKVNECISQPIHETGLCKN----LLQEYAQKMNYAIPLYQCRKDEASGK 130
A++A+ L KV+ E GL + L+ +AQK N + C D +
Sbjct: 67 AKLAVEILDNENKVDSHTDAS--EQGLIEGNYIGLVNSFAQKENLPVNFELCDPD-SQLP 123
Query: 131 VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTA 163
+F C +IG Y G KKEA+ AA+ A
Sbjct: 124 HRFICKCKIGQTTYGTGFGANKKEAKQLAAKNA 156
>sp|B0BUA6|RNC_ACTPJ Ribonuclease 3 OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=rnc PE=3 SV=1
Length = 223
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQE+ Q +P P YE + +G +H F+ T ++ + + +R+ AEQ+AA
Sbjct: 154 KTRLQEFLQGRKLPLPTYEVLNIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAA 213
Query: 76 EVALVEL 82
E L +L
Sbjct: 214 EQVLAKL 220
>sp|B8F3C7|RNC_HAEPS Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (strain SH0165)
GN=rnc PE=3 SV=1
Length = 223
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 17 KSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAA 75
K+RLQEY Q +P P YE I +G +H F+ + V+ V + +R+ AEQ AA
Sbjct: 154 KTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAA 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,698,595
Number of Sequences: 539616
Number of extensions: 5795092
Number of successful extensions: 15380
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 438
Number of HSP's that attempted gapping in prelim test: 14836
Number of HSP's gapped (non-prelim): 832
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)