Query 014809
Match_columns 418
No_of_seqs 251 out of 1918
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 8.5E-25 1.8E-29 217.5 18.4 155 14-172 38-214 (339)
2 cd00048 DSRM Double-stranded R 99.6 4.7E-15 1E-19 112.6 9.4 67 101-167 1-68 (68)
3 cd00048 DSRM Double-stranded R 99.6 5.2E-15 1.1E-19 112.3 9.0 67 15-82 1-68 (68)
4 PHA02701 ORF020 dsRNA-binding 99.6 3.3E-15 7.2E-20 139.0 9.4 70 13-84 107-177 (183)
5 PF00035 dsrm: Double-stranded 99.6 9.7E-15 2.1E-19 111.9 9.1 66 102-167 1-67 (67)
6 PHA02701 ORF020 dsRNA-binding 99.6 6.5E-15 1.4E-19 137.0 9.7 71 98-169 106-177 (183)
7 smart00358 DSRM Double-strande 99.6 1.2E-14 2.6E-19 110.7 9.0 65 102-167 1-66 (67)
8 smart00358 DSRM Double-strande 99.6 1.2E-14 2.6E-19 110.7 8.9 65 16-82 1-66 (67)
9 PHA03103 double-strand RNA-bin 99.5 2.5E-14 5.4E-19 133.5 9.5 70 13-84 108-177 (183)
10 PF00035 dsrm: Double-stranded 99.5 3.5E-14 7.5E-19 108.8 8.0 66 16-82 1-67 (67)
11 PHA03103 double-strand RNA-bin 99.5 3.9E-14 8.4E-19 132.2 9.7 70 98-169 107-177 (183)
12 PRK12371 ribonuclease III; Rev 99.5 5.7E-14 1.2E-18 135.4 9.6 72 12-84 159-231 (235)
13 PRK12371 ribonuclease III; Rev 99.5 1.5E-13 3.3E-18 132.5 10.1 73 98-170 159-232 (235)
14 COG0571 Rnc dsRNA-specific rib 99.5 2.6E-13 5.5E-18 131.3 9.8 74 11-85 158-232 (235)
15 PRK14718 ribonuclease III; Pro 99.4 4.9E-13 1.1E-17 138.7 9.4 75 12-87 149-225 (467)
16 COG0571 Rnc dsRNA-specific rib 99.4 9.3E-13 2E-17 127.4 9.8 73 98-170 159-232 (235)
17 KOG3732 Staufen and related do 99.4 4.4E-13 9.6E-18 134.3 6.0 157 11-171 139-336 (339)
18 PRK14718 ribonuclease III; Pro 99.4 1.3E-12 2.8E-17 135.6 9.6 74 99-172 150-225 (467)
19 PRK12372 ribonuclease III; Rev 99.4 1.8E-12 4E-17 133.4 9.7 75 12-87 149-225 (413)
20 PRK12372 ribonuclease III; Rev 99.3 4.4E-12 9.5E-17 130.6 9.9 74 99-172 150-225 (413)
21 PRK00102 rnc ribonuclease III; 99.3 8.3E-12 1.8E-16 117.9 9.6 73 11-84 155-228 (229)
22 PRK00102 rnc ribonuclease III; 99.3 9.6E-12 2.1E-16 117.4 10.0 72 98-169 156-228 (229)
23 PF14709 DND1_DSRM: double str 99.3 1.2E-11 2.7E-16 101.2 8.1 69 14-82 1-79 (80)
24 TIGR02191 RNaseIII ribonucleas 99.3 1.8E-11 3.9E-16 114.6 8.9 70 12-82 150-220 (220)
25 TIGR02191 RNaseIII ribonucleas 99.2 2.5E-11 5.3E-16 113.7 9.3 70 98-167 150-220 (220)
26 PF14709 DND1_DSRM: double str 99.2 2.7E-11 5.8E-16 99.2 8.1 69 100-168 1-80 (80)
27 KOG2777 tRNA-specific adenosin 99.2 1.3E-10 2.8E-15 123.2 11.3 128 32-172 10-157 (542)
28 KOG4334 Uncharacterized conser 99.1 5.8E-10 1.3E-14 116.3 10.0 166 11-182 372-573 (650)
29 KOG1817 Ribonuclease [RNA proc 98.4 8E-07 1.7E-11 92.3 8.9 73 11-84 424-503 (533)
30 KOG1817 Ribonuclease [RNA proc 98.3 2E-06 4.2E-11 89.5 8.9 75 98-172 425-506 (533)
31 KOG2777 tRNA-specific adenosin 98.0 1.8E-05 3.9E-10 84.7 9.3 67 13-86 89-156 (542)
32 KOG4334 Uncharacterized conser 97.8 1.5E-05 3.3E-10 84.0 3.8 73 99-172 374-446 (650)
33 KOG3769 Ribonuclease III domai 97.4 0.00033 7.2E-09 70.4 6.8 75 98-172 230-306 (333)
34 KOG3769 Ribonuclease III domai 97.3 0.00031 6.8E-09 70.6 5.1 73 13-86 231-305 (333)
35 KOG0921 Dosage compensation co 97.3 0.00046 1E-08 77.6 6.9 153 15-171 2-242 (1282)
36 KOG3792 Transcription factor N 96.5 0.004 8.7E-08 68.5 6.2 147 14-170 370-572 (816)
37 PF03368 Dicer_dimer: Dicer di 96.4 0.016 3.4E-07 48.4 7.5 66 103-172 2-76 (90)
38 PF03368 Dicer_dimer: Dicer di 96.0 0.024 5.2E-07 47.4 6.7 69 17-89 2-78 (90)
39 KOG2334 tRNA-dihydrouridine sy 91.3 0.083 1.8E-06 55.8 1.1 71 12-85 373-443 (477)
40 PF14954 LIX1: Limb expression 91.2 0.46 1E-05 46.4 6.0 64 98-165 19-93 (252)
41 KOG0921 Dosage compensation co 90.1 0.53 1.2E-05 54.1 6.0 70 101-172 2-73 (1282)
42 PF14954 LIX1: Limb expression 87.7 1.6 3.5E-05 42.8 6.7 68 13-83 20-96 (252)
43 KOG2334 tRNA-dihydrouridine sy 80.7 0.67 1.5E-05 49.2 0.9 71 98-171 373-444 (477)
44 KOG3792 Transcription factor N 63.0 7.3 0.00016 44.0 3.6 64 13-83 505-570 (816)
45 PF14657 Integrase_AP2: AP2-li 44.2 80 0.0017 22.9 5.5 22 146-168 21-42 (46)
46 cd04518 TBP_archaea archaeal T 31.4 4.5E+02 0.0097 24.7 12.4 116 44-168 45-172 (174)
47 PF02169 LPP20: LPP20 lipoprot 31.2 65 0.0014 25.8 3.6 31 142-172 13-43 (92)
48 KOG0701 dsRNA-specific nucleas 30.2 58 0.0013 40.3 4.3 74 99-172 1513-1601(1606)
49 KOG0701 dsRNA-specific nucleas 24.4 79 0.0017 39.2 4.1 73 13-86 1513-1600(1606)
50 COG1944 Uncharacterized conser 23.6 2.5E+02 0.0055 30.0 7.2 68 16-86 19-88 (398)
51 PF02169 LPP20: LPP20 lipoprot 21.2 1.1E+02 0.0025 24.4 3.3 26 57-83 14-39 (92)
52 PRK00394 transcription factor; 20.2 7.3E+02 0.016 23.4 12.3 119 44-169 44-174 (179)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.93 E-value=8.5e-25 Score=217.49 Aligned_cols=155 Identities=30% Similarity=0.368 Sum_probs=136.4
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC---
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN--- 89 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~--- 89 (418)
+.|+|.|||||.+++. .|.|++.+ +||.|.+.|.++|.|.... +.|.| +|||.|+|.||..+|..|....+..
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~-a~GeG-~sKK~AKh~AA~~~L~~lk~l~~l~~v~ 114 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT-ATGEG-KSKKLAKHRAAEALLKELKKLPPLANVR 114 (339)
T ss_pred CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE-EecCC-CchhHHHHHHHHHHHHHHhcCCCccccc
Confidence 8999999999999998 66999998 8999999999999998654 79999 9999999999999999999876531
Q ss_pred -c---------cCC---CCC----CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCC
Q 014809 90 -E---------CIS---QPI----HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKT 151 (418)
Q Consensus 90 -s---------~~s---~P~----~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~S 151 (418)
+ ... ++. ....|++++|+||||+++|..|.|+++.+.|++| +.|+++|.+.+. ..+|.|.|
T Consensus 115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~s 193 (339)
T KOG3732|consen 115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPS 193 (339)
T ss_pred cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCch
Confidence 0 110 111 2478999999999999999999999999999888 999999999875 47799999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 014809 152 KKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 152 KKeAKQ~AAk~AL~~L~~~~~ 172 (418)
||.||++||.+||+.|....+
T Consensus 194 KKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 194 KKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999987665
No 2
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.60 E-value=4.7e-15 Score=112.57 Aligned_cols=67 Identities=34% Similarity=0.416 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809 101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167 (418)
Q Consensus 101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L 167 (418)
|||+.|+||||++++..|.|.+....|+.| +.|+|.|.|+|..+..|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999976678888 9999999999988899999999999999999999875
No 3
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.60 E-value=5.2e-15 Score=112.32 Aligned_cols=67 Identities=46% Similarity=0.567 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809 15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 (418)
Q Consensus 15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L 82 (418)
|||+.|+||||++++..|.|++.. .|+.|.+.|.|.|.|+|..++.|.| .|||+|++.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999966 8999999999999999988899999 899999999999999865
No 4
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.59 E-value=3.3e-15 Score=138.97 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
.+||||.||||||+++..+ .|.++. .||+|.+.|++.|+|+|..++.|.| +|||+|||+||+.||..|..
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASG-CSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEe-CCHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999888 899887 7999999999999999999999999 99999999999999998865
No 5
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.58 E-value=9.7e-15 Score=111.86 Aligned_cols=66 Identities=36% Similarity=0.515 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167 (418)
Q Consensus 102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L 167 (418)
||+.|+|||+++++.+|+|.+....++++ +.|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999988876555566 8999999999999999999999999999999999987
No 6
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.58 E-value=6.5e-15 Score=137.01 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
...|||+.||||||+++..+ .|.+....||+| +.|++.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999988 898887789999 999999999999999999999999999999999999854
No 7
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.57 E-value=1.2e-14 Score=110.73 Aligned_cols=65 Identities=38% Similarity=0.473 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167 (418)
Q Consensus 102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L 167 (418)
||+.|+||||++++ .|.|.+....|+.| +.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 89999987678888 9999999999999999999999999999999999887
No 8
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.57 E-value=1.2e-14 Score=110.72 Aligned_cols=65 Identities=49% Similarity=0.596 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 (418)
Q Consensus 16 pKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L 82 (418)
||+.|+||||++++ .|.|++.. .|++|.+.|+|.|+|+|..++.|.| .|||+|++.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEG-SSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEecc-CCHHHHHHHHHHHHHHhc
Confidence 78999999999999 89999987 8999999999999999988899999 899999999999999876
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.53 E-value=2.5e-14 Score=133.47 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
.+|||+.||||||+++... .|.+...||+|.+.|++.|+|+|..+++|.| +|||+|||+||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIG-STKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999875 5554458999999999999999999999999 89999999999999999865
No 10
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.52 E-value=3.5e-14 Score=108.81 Aligned_cols=66 Identities=47% Similarity=0.653 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCCCCeEEEeecCCCCC-CcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809 16 FKSRLQEYAQKAGIPTPVYETIKEGPSHE-PWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 (418)
Q Consensus 16 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~-~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L 82 (418)
||+.|+||||++++.+|.|.+...+++|. +.|.|.|+|+|..++.|.| .|||+|++.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEG-SSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEecc-CCHHHHHHHHHHHHHHhC
Confidence 79999999999998887777767666655 8999999999999999999 899999999999999987
No 11
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.52 E-value=3.9e-14 Score=132.20 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=62.5
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
...|||+.||||||+++... +|. ....||.| +.|++.|.|+|..|++|.|+|||+|||.||+.||..|..
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~-y~~-i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW-SIN-ITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe-EEE-EEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999885 554 44579999 999999999999999999999999999999999999854
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=99.50 E-value=5.7e-14 Score=135.36 Aligned_cols=72 Identities=35% Similarity=0.369 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
...|||+.||||||+.+...|.|.++. .||+|.+.|+|.|+|+|..+++|.| +|||+||+.||+.||+.|..
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G-~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEG-RSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHhhh
Confidence 467999999999999988899999986 8999999999999999999999999 99999999999999998865
No 13
>PRK12371 ribonuclease III; Reviewed
Probab=99.47 E-value=1.5e-13 Score=132.45 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||+.||||||+.+...|.|.+....||.| +.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~~ 232 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGVW 232 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhhh
Confidence 356999999999999999999999987789999 9999999999999999999999999999999999998654
No 14
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.45 E-value=2.6e-13 Score=131.26 Aligned_cols=74 Identities=38% Similarity=0.455 Sum_probs=69.4
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
....|||+.||||||.++..+|.|.++. +||+|++.|++.|.++|..++.|.| +|||+|||.||+.||..|...
T Consensus 158 ~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G-~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 158 DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKG-RSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecc-cCHHHHHHHHHHHHHHHhccc
Confidence 3458999999999999999999999998 7999999999999999999999999 999999999999999998754
No 15
>PRK14718 ribonuclease III; Provisional
Probab=99.41 E-value=4.9e-13 Score=138.66 Aligned_cols=75 Identities=33% Similarity=0.373 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELAKLGK 87 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~ 87 (418)
..+|||+.||||||++++.+|+|.++. .||+|.+.|++.|+|+|.. ++.|.| .|||+|||.||+.||+.|....+
T Consensus 149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G-~SKKeAEQ~AAk~AL~kL~~~~~ 225 (467)
T PRK14718 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSG-ASRRAAEQAAAKKALDEVTAVAP 225 (467)
T ss_pred cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEc-CCHHHHHHHHHHHHHHHhcccch
Confidence 467999999999999999999999987 8999999999999999954 479999 89999999999999999985544
No 16
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.40 E-value=9.3e-13 Score=127.39 Aligned_cols=73 Identities=30% Similarity=0.355 Sum_probs=68.9
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||+.||||||+++...|.|.++...||.| +.|++.|.++|..++.|.|+|||+|||.||+.||..|...
T Consensus 159 ~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 159 QFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 348999999999999999999999999889999 9999999999999999999999999999999999998754
No 17
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.38 E-value=4.4e-13 Score=134.26 Aligned_cols=157 Identities=25% Similarity=0.257 Sum_probs=106.5
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN 89 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~ 89 (418)
....||+++||||||+++|.+|.|+++. .|++|.+.|++.|.|.+.. .+|.| .|||.|+++||+.||+.|....+..
T Consensus 139 ~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~-~~GkG-~sKKiAKRnAAeamLe~l~~~~~~~ 216 (339)
T KOG3732|consen 139 GQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKG-PSKKIAKRNAAEAMLESLGFVKPNK 216 (339)
T ss_pred ccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee-eecCC-chHHHHHHHHHHHHHHHhccCCCCc
Confidence 4578999999999999999999999998 8999999999999999875 69999 9999999999999999998654310
Q ss_pred ------ccCCCCC--------------------------------CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCc
Q 014809 90 ------ECISQPI--------------------------------HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKV 131 (418)
Q Consensus 90 ------s~~s~P~--------------------------------~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~ 131 (418)
.....|. ....+|...|.+......+.. .|..... -....
T Consensus 217 ~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~~e~~f~~-~y~d~~~-~t~sg 294 (339)
T KOG3732|consen 217 TPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIAPENQFTV-TYPDIEE-LTLSG 294 (339)
T ss_pred CcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccccccchhe-ecchhHH-hhhhh
Confidence 0000110 012233333333322222221 1111100 00013
Q ss_pred eEEEEEEECCEEe--eecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 132 QFSCTVEIGDIRY--IGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 132 ~Ft~tV~I~G~~~--g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
.|.|.|..++... ..|.+.|-..|+..||+.+|++|....
T Consensus 295 ~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~~ 336 (339)
T KOG3732|consen 295 QNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIMA 336 (339)
T ss_pred HHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHHh
Confidence 4445555544332 357889999999999999999998764
No 18
>PRK14718 ribonuclease III; Provisional
Probab=99.38 E-value=1.3e-12 Score=135.58 Aligned_cols=74 Identities=27% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||++||||||++++.+|.|.++.+.||.| +.|++.|+|+|. .++.|.|.|||+|||.||+.||+.|....+
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~~~ 225 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAVAP 225 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcccch
Confidence 46999999999999999999999988789999 999999999985 458999999999999999999999985443
No 19
>PRK12372 ribonuclease III; Reviewed
Probab=99.36 E-value=1.8e-12 Score=133.37 Aligned_cols=75 Identities=33% Similarity=0.354 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELAKLGK 87 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~ 87 (418)
..+|||+.||||||++++.+|+|.++. .||+|.+.|++.|+|+|.. ++.|.| .|||+|||.||+.||+.|....+
T Consensus 149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G-~SKKeAEQ~AAr~AL~kL~~~~~ 225 (413)
T PRK12372 149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSG-ASRRAAEQAAAKKALDEVMAAAP 225 (413)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEe-CCHHHHHHHHHHHHHHHHhcccc
Confidence 467999999999999999999999987 8999999999999999854 478999 89999999999999999985443
No 20
>PRK12372 ribonuclease III; Reviewed
Probab=99.33 E-value=4.4e-12 Score=130.64 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=67.3
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||+.||||||++++..|.|.+....||.| +.|+|.|+|+|. .++.|.|.|||+|||.||+.||+.|....+
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~~ 225 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAP 225 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcccc
Confidence 46999999999999999999999988889999 999999999985 557999999999999999999999985433
No 21
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.30 E-value=8.3e-12 Score=117.86 Aligned_cols=73 Identities=40% Similarity=0.558 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
....|||+.|+||||++++..|.|+++. .|+.|.+.|+|.|+++|..++.|.| .|||+||+.||+.||+.|..
T Consensus 155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTG-SSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHhh
Confidence 3567999999999999999999999877 7999999999999999999999999 89999999999999998864
No 22
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.30 E-value=9.6e-12 Score=117.41 Aligned_cols=72 Identities=29% Similarity=0.349 Sum_probs=67.4
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
...|||+.|+||||++++..|.|.+....|+.| +.|+|+|.|+|..++.|.|.|||+||+.||+.||+.|+.
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999887778888 999999999999999999999999999999999999864
No 23
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.28 E-value=1.2e-11 Score=101.19 Aligned_cols=69 Identities=33% Similarity=0.424 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEee---------cccCCcChHHHHHHHHHHHHHHH
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYD---------SLPGFFNRKAAEQSAAEVALVEL 82 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~g---------sG~G~~SKKeAEq~AAk~AL~~L 82 (418)
+++++.|+|+|++++|+.|.|++.. .||+|.+.|.+.|.|.+..+. -+.+..+||+|+..||+.+|..|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999986 899999999999999987762 12444799999999999999887
No 24
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.25 E-value=1.8e-11 Score=114.59 Aligned_cols=70 Identities=43% Similarity=0.587 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHH
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVEL 82 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L 82 (418)
...|||+.|+||||++++..|.|+++. .|++|.+.|.|.|+++|..+++|.| .|||+||+.||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g-~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKG-KSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHhC
Confidence 578999999999999999899999986 6999999999999999999999999 899999999999999864
No 25
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.24 E-value=2.5e-11 Score=113.67 Aligned_cols=70 Identities=34% Similarity=0.432 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHH
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAI 167 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L 167 (418)
...|||+.|+||||++++..|.|.+....|++| +.|.|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999987678888 9999999999999999999999999999999999865
No 26
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.24 E-value=2.7e-11 Score=99.21 Aligned_cols=69 Identities=30% Similarity=0.376 Sum_probs=60.7
Q ss_pred CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEee----------ecccCCHHHHHHHHHHHHHHHHH
Q 014809 100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYI----------GGAAKTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g----------~G~G~SKKeAKQ~AAk~AL~~L~ 168 (418)
.++++.|+|+|++++|+.|.|++....||+| ..|.+.|.|.+..+. .-...+||+||..||+.||+.|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999987789999 999999999877652 23468999999999999999873
No 27
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=123.19 Aligned_cols=128 Identities=27% Similarity=0.327 Sum_probs=107.3
Q ss_pred CeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCc-----------cCC------
Q 014809 32 PVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNE-----------CIS------ 93 (418)
Q Consensus 32 P~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s-----------~~s------ 93 (418)
+.|..+. .||.|.+.|.+.|.|+|..+. ||.|++.||+.|+..+....+... ..+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 6888876 899999999999999997642 899999999999999887654310 000
Q ss_pred -CCCCCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 94 -QPIHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 94 -~P~~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
.-.....|++++|+||++ -++|.+....+|.| +.|.|.|.|+|+.|..| |+|||+||+.||+.||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 001257899999999999 56888888889999 99999999999999877 99999999999999999998766
Q ss_pred c
Q 014809 172 S 172 (418)
Q Consensus 172 ~ 172 (418)
.
T Consensus 157 ~ 157 (542)
T KOG2777|consen 157 E 157 (542)
T ss_pred C
Confidence 4
No 28
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=99.06 E-value=5.8e-10 Score=116.28 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCC-
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVN- 89 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~- 89 (418)
.+.+..+..|+||+|+....+|.|++.+. ......|...|.+|+..|++|.| .|||.|+..||+.+|+.|...-...
T Consensus 372 pngks~vCiLhEy~q~~lk~~pvyef~e~-~n~stpysa~v~~d~~~yGsG~g-~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQCLKSLPVYEFAEN-DNNSTPYSAGVLPDLFPYGSGVG-ASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred CCCceeeehHHHHHHHHhhhcceeehhhc-cCCCCcccccccccccccccccc-cchHHHHHHHHHHHHHHhcchhhhcc
Confidence 45678888999999999999999988762 13356799999999999999999 9999999999999999986532110
Q ss_pred ----c---------c----------CCCCC-------CCCCChhHHHHHHHHHc-CCC-C-CeEEEeeccCCCCceEEEE
Q 014809 90 ----E---------C----------ISQPI-------HETGLCKNLLQEYAQKM-NYA-I-PLYQCRKDEASGKVQFSCT 136 (418)
Q Consensus 90 ----s---------~----------~s~P~-------~e~~n~Ks~LQE~cQK~-~l~-i-P~Y~~~e~~GP~h~~Ft~t 136 (418)
+ . +..|- .....+-++|.++.+++ +|. + -.+++.. .+.....|++.
T Consensus 450 ~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~-~~nqkse~im~ 528 (650)
T KOG4334|consen 450 DNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIG-NGNQKSEVIMI 528 (650)
T ss_pred cccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccC-CCCccceeEee
Confidence 0 0 00110 12446677888877766 331 1 1222221 22222778777
Q ss_pred EEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcccccc--CCCCCCc
Q 014809 137 VEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSASELS--GNSAGNT 182 (418)
Q Consensus 137 V~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~~~~--~~~~g~~ 182 (418)
| |+...++++++|++++|.|.+..|+.|+.....|. ++.+|.-
T Consensus 529 ~---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 529 L---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred e---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 6 77778899999999999999999999998877644 6666644
No 29
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.41 E-value=8e-07 Score=92.34 Aligned_cols=73 Identities=27% Similarity=0.330 Sum_probs=67.2
Q ss_pred CCCCChHHHHHHHHHHcCCC------CCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 11 SNCYVFKSRLQEYAQKAGIP------TPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~------lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
..|.+||+.||.||.....+ +|.|.+.. .||.+.+.|++.|+++|+.+++|.| +|-|.|+..||+.||+.+.
T Consensus 424 q~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G-~nik~Ae~rAA~~ALe~~~ 502 (533)
T KOG1817|consen 424 QDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVG-SNIKQAEMRAAMQALENLK 502 (533)
T ss_pred hhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccC-chHhHHHHHHHHHHHHHHH
Confidence 35789999999999988543 79999988 8999999999999999999999999 9999999999999999988
Q ss_pred h
Q 014809 84 K 84 (418)
Q Consensus 84 ~ 84 (418)
.
T Consensus 503 ~ 503 (533)
T KOG1817|consen 503 M 503 (533)
T ss_pred h
Confidence 6
No 30
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.31 E-value=2e-06 Score=89.51 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=68.8
Q ss_pred CCCChhHHHHHHHHHcCCC------CCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYA------IPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~------iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
.+.|+++.||.||..+..+ +|.|.+....||.+ +.|.+.|+++|+.+++|+|+|.|+|+..||..||+.+...
T Consensus 425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~d 504 (533)
T KOG1817|consen 425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMD 504 (533)
T ss_pred hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhh
Confidence 6789999999999988764 89999988889998 9999999999999999999999999999999999999875
Q ss_pred cc
Q 014809 171 AS 172 (418)
Q Consensus 171 ~~ 172 (418)
..
T Consensus 505 F~ 506 (533)
T KOG1817|consen 505 FS 506 (533)
T ss_pred hH
Confidence 54
No 31
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=98.03 E-value=1.8e-05 Score=84.67 Aligned_cols=67 Identities=33% Similarity=0.406 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
.+||++.|+||.+ -+.|++.. .||.|.+.|.+.|.|||..|..| | +|||+|++.||..||+.|....
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~-~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-G-RSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-C-cchHHHHHHHHHHHHHHHHhcc
Confidence 6899999999998 45888887 89999999999999999998666 9 9999999999999999998765
No 32
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.80 E-value=1.5e-05 Score=83.97 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=64.2
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
....+..|+||+|+-...+|.|++.+ .......|.+.|.+++..||.|.|.|||.||..||+.+|+.|-....
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~ 446 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLR 446 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhh
Confidence 45678899999999999999999875 33344889999999999999999999999999999999999976654
No 33
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00033 Score=70.38 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC--ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK--VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h--~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...+|..+|-++|+++++.-|.|.+..++|-.. |.|.+-++-+-+.++.|.|.|-|.|++.||+.||..|..-.+
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp 306 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP 306 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence 457899999999999999999999988777554 999999999998999999999999999999999999876553
No 34
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00031 Score=70.56 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-c-CCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-E-GPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-e-GP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
..+|...|-++|+++++.-|+|+++. . +....|.|.|.++-|.+.++.|.| .|-|.|++.||.+||..+-...
T Consensus 231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~G-esl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQG-ESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcc-hHHHHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999997 4 457789999999999999999999 8999999999999999876543
No 35
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.28 E-value=0.00046 Score=77.57 Aligned_cols=153 Identities=24% Similarity=0.222 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEe-ecccCCcChHHHHHHHHHHHHHHHHhcCCCC----
Q 014809 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRY-DSLPGFFNRKAAEQSAAEVALVELAKLGKVN---- 89 (418)
Q Consensus 15 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~-gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~---- 89 (418)
|-|..|-.||-|+.+. |.|++..+++....+|.|.|.+.+..| ..|.. .+||+|+.+||+...+.|...+..+
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~s-tnkKda~knac~dfv~ylvr~Gk~n~~d~ 79 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNS-TNKKDAATNAAQDFCQYLVREGKMQQSDI 79 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecc-cccchhhHHHHHHHHHHhhhhccccccCC
Confidence 5688999999999987 899999999999999999999998876 24555 7899999999999999987654210
Q ss_pred ------------------------------c--cCCCCC-----------------------------------------
Q 014809 90 ------------------------------E--CISQPI----------------------------------------- 96 (418)
Q Consensus 90 ------------------------------s--~~s~P~----------------------------------------- 96 (418)
+ ...+|.
T Consensus 80 p~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ 159 (1282)
T KOG0921|consen 80 PTLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAE 159 (1282)
T ss_pred cccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcc
Confidence 0 000000
Q ss_pred ----CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHH
Q 014809 97 ----HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLA 166 (418)
Q Consensus 97 ----~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I-----~G~~~g~G~G~SKKeAKQ~AAk~AL~~ 166 (418)
....|.|..|++|-|++.+ .-.|..+. .+|.| +.|+.+..| +-.....+.|.+||.|....|...+..
T Consensus 160 ihg~wt~eN~K~~ln~~~q~~~~-~~~y~~~~-~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrq 237 (1282)
T KOG0921|consen 160 IHGNWTMENAKKALNEYLQKMRI-QDNYKYTI-VGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQ 237 (1282)
T ss_pred ccCCCCcchhHHHHhHHHhhhhh-ccccceee-cCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHH
Confidence 0356889999999999999 44566553 57777 999987765 223345688999999999999988777
Q ss_pred HHhcc
Q 014809 167 IQSSA 171 (418)
Q Consensus 167 L~~~~ 171 (418)
|-...
T Consensus 238 m~hl~ 242 (1282)
T KOG0921|consen 238 LFHLN 242 (1282)
T ss_pred HHHHh
Confidence 75544
No 36
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.54 E-value=0.004 Score=68.55 Aligned_cols=147 Identities=18% Similarity=0.094 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHcCCCCCeEE------Eee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYE------TIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Ye------v~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
.|+...+.-+-|.+. -..|+ ++. .+|.|.++|+.+|.+|+..+ +..| .|||.|+-.||++-|+......
T Consensus 370 ~d~nak~mhl~grRh--rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~g-ps~~~~~wh~~~k~lq~~~~p~ 445 (816)
T KOG3792|consen 370 NDPNAKEMHLKGRRH--RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEG-PSKKTAKWHAARKRLQNEGRPT 445 (816)
T ss_pred CCcchHHhhhhcccc--cceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCC-cccccchHHHHHHHhhccCCCc
Confidence 344445555544443 23888 655 89999999999999999886 7789 9999999999999998763110
Q ss_pred ----CC----Ccc-----------CC-------------CCCC---------------CCCChhHHHHHHHHHcCCCCCe
Q 014809 87 ----KV----NEC-----------IS-------------QPIH---------------ETGLCKNLLQEYAQKMNYAIPL 119 (418)
Q Consensus 87 ----~~----~s~-----------~s-------------~P~~---------------e~~n~Ks~LQE~cQK~~l~iP~ 119 (418)
.+ .++ .+ .|.+ ..++....|+|- +.- -.
T Consensus 446 ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~rg--~k 520 (816)
T KOG3792|consen 446 GAAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---RRG--DK 520 (816)
T ss_pred cccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---ccc--cc
Confidence 00 000 00 0100 123444444443 221 24
Q ss_pred EEEeeccC-CCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 120 YQCRKDEA-SGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 120 Y~~~e~~G-P~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
|+...+.+ -.| ++|...|...|+.+ .|.+.+++-|+..|+-.|++.+...
T Consensus 521 ~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l 572 (816)
T KOG3792|consen 521 YELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSGL 572 (816)
T ss_pred eecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccccc
Confidence 55543334 567 99999999999874 5999999999999888777666544
No 37
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.37 E-value=0.016 Score=48.43 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 103 KNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIGDI----RYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 103 Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~G~----~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
+++|+.||++.-- ..|.|.+.... ..|.|+|.+-.. .+......||+.||+.||-.|+..|....-
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~----~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIG----SGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE------G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcC----CcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 6789999998743 35889887643 389999988321 122236799999999999999999988764
No 38
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=95.98 E-value=0.024 Score=47.36 Aligned_cols=69 Identities=29% Similarity=0.252 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCC-----CCCeEEEeecCCCCCCcEEEEEEECCEE-e--ecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809 17 KSRLQEYAQKAGI-----PTPVYETIKEGPSHEPWFRSTVIVDDVR-Y--DSLPGFFNRKAAEQSAAEVALVELAKLGKV 88 (418)
Q Consensus 17 KS~LQE~cQK~g~-----~lP~Yev~~eGP~H~~~Ftv~V~V~G~~-~--gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~ 88 (418)
++.|+.||++..- ..|.|.+...+. .|.|+|.+-... + -.|....||+.|++.||-.|...|.+.+..
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~l 77 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 5789999999743 258999987433 799999985311 1 133333799999999999999999998765
Q ss_pred C
Q 014809 89 N 89 (418)
Q Consensus 89 ~ 89 (418)
+
T Consensus 78 d 78 (90)
T PF03368_consen 78 D 78 (90)
T ss_dssp T
T ss_pred c
Confidence 4
No 39
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=0.083 Score=55.82 Aligned_cols=71 Identities=31% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
.+..||..|..||-+.+..-|.|+++.. .++.|...+.+.|..|.++.+..++|.|+|.||..+|......
T Consensus 373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 3578999999999999999999999873 3578999999999999887777899999999999999866543
No 40
>PF14954 LIX1: Limb expression 1
Probab=91.24 E-value=0.46 Score=46.43 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHc---CCC-----CCeEEEeeccCCCC-ceEEEEEEECC-EEeee-cccCCHHHHHHHHHHHHHH
Q 014809 98 ETGLCKNLLQEYAQKM---NYA-----IPLYQCRKDEASGK-VQFSCTVEIGD-IRYIG-GAAKTKKEAEIKAARTALL 165 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~---~l~-----iP~Y~~~e~~GP~h-~~Ft~tV~I~G-~~~g~-G~G~SKKeAKQ~AAk~AL~ 165 (418)
...|-+..||||=|.. +.. +..|+. .|.. |.|.|-|++-| -.|+. -.+.||-+|++.||+.||-
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs----~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALm 93 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYES----VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALM 93 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeec----cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHH
Confidence 3568899999987643 333 344543 4444 88999999954 34443 3689999999999998873
No 41
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.07 E-value=0.53 Score=54.09 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEee-ecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYI-GGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g-~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
|-|..|-.||.++.+. |.|++..+ ++.. .+|.|.|.+.+..|. .|...+||.|+..||+.-++.|-....
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~-~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk 73 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSE-GRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGK 73 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhh-cccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhcc
Confidence 5688999999999998 99998764 5554 999999999876654 467788999999999999999976554
No 42
>PF14954 LIX1: Limb expression 1
Probab=87.72 E-value=1.6 Score=42.81 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=47.0
Q ss_pred CCChHHHHHHHHHHc---CCCC-----CeEEEeecCCCCCCcEEEEEEECCEE-eecccCCcChHHHHHHHHHHHHHHHH
Q 014809 13 CYVFKSRLQEYAQKA---GIPT-----PVYETIKEGPSHEPWFRSTVIVDDVR-YDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 13 ~~npKS~LQE~cQK~---g~~l-----P~Yev~~eGP~H~~~Ftv~V~V~G~~-~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
.-|-+..||||=|.+ +..+ +.|+. .|+..+.|.|=|++.|-. |+.=.-+.||-+|+++||+.||..-.
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs---~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSv 96 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYES---VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSV 96 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeec---cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHH
Confidence 347788999965543 3333 34544 456677899999987533 33323348999999999999997643
No 43
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.69 E-value=0.67 Score=49.23 Aligned_cols=71 Identities=23% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeec-ccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGG-AAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G-~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
.+..++..|.+||-+.+..-|.|++... ..+.|...+.++|..|..+ +-++||.|+|.||..+|.......
T Consensus 373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e 444 (477)
T KOG2334|consen 373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWE 444 (477)
T ss_pred CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcch
Confidence 4578999999999999999999998753 2388999999999999877 459999999999999987765544
No 44
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=62.95 E-value=7.3 Score=43.98 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cC-CCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EG-PSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eG-P~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
.+++...|.|- .++ . +|++.. .| -+|.++|...|.+.|+. ..|.+ .+++.|+..|+..|++.+.
T Consensus 505 lK~vsd~L~Ek--~rg--~-k~El~set~~gs~~~R~v~gV~rvG~~-akG~~-~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 505 LKLVSDELAEK--RRG--D-KYELPSETGTGSHDKRFVKGVMRVGIL-AKGLL-LNGDRAVELALLCAEKPTS 570 (816)
T ss_pred hcchhHHHhhh--ccc--c-ceecccccCCCCCCceeeeeeeeeehh-hcccc-ccchHHHHHHHHhccCccc
Confidence 45666666665 233 2 788876 44 78999999999999987 48999 8999999999998886543
No 45
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=44.21 E-value=80 Score=22.92 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=15.0
Q ss_pred ecccCCHHHHHHHHHHHHHHHHH
Q 014809 146 GGAAKTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 146 ~G~G~SKKeAKQ~AAk~AL~~L~ 168 (418)
..-..||++|+..+++ ++..|.
T Consensus 21 k~GF~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 21 KRGFKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred cCCCCcHHHHHHHHHH-HHHHHH
Confidence 3447999999996655 444444
No 46
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.36 E-value=4.5e+02 Score=24.72 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=66.6
Q ss_pred CCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCccCCCC-C-----CCCCChhHHHHHHHHHcCCCC
Q 014809 44 EPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNECISQP-I-----HETGLCKNLLQEYAQKMNYAI 117 (418)
Q Consensus 44 ~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s~~s~P-~-----~e~~n~Ks~LQE~cQK~~l~i 117 (418)
.|.=++.|+-.|+.+..|. +|..+|+. |++..+..|...+-........ . .-...+.=.|..++....-
T Consensus 45 ~Pk~t~lIF~SGKiv~tGa--ks~~~a~~-a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~~la~~~~~-- 119 (174)
T cd04518 45 DPKIAALIFRSGKMVCTGA--KSVEDLHR-AVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLDAIAIGLPN-- 119 (174)
T ss_pred CCcEEEEEECCCeEEEEcc--CCHHHHHH-HHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHHHHHhhCCC--
Confidence 4556777888999887664 48888887 6788888887765221100000 0 0011222247777765431
Q ss_pred CeEEEeeccCCC------CceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809 118 PLYQCRKDEASG------KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 118 P~Y~~~e~~GP~------h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~ 168 (418)
-.|+=.. -|+ .|.-++.+.-.|+.+.+| ++|..+++. |.+..+..|+
T Consensus 120 ~~YePe~--fpglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~~l~ 172 (174)
T cd04518 120 AEYEPEQ--FPGLVYRLDEPKVVLLLFSSGKMVITG-AKSEEDAKR-AVEKLLSRLK 172 (174)
T ss_pred CccCccc--CceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHh
Confidence 2232111 111 144455566689888777 788888887 5566666665
No 47
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=31.23 E-value=65 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.3
Q ss_pred EEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 142 IRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 142 ~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..++.|.|.+.+.|++.|-..+.+.|.....
T Consensus 13 ~l~a~G~~~~~~~A~~~A~~~la~~i~~~v~ 43 (92)
T PF02169_consen 13 YLYAVGSGSSREQAKQDALANLAEQISVVVI 43 (92)
T ss_pred EEEEEEcccChHHHHHHHHHHHHHheeEEEE
Confidence 3567899999999999888887776765543
No 48
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=30.19 E-value=58 Score=40.33 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEE--------------EEEEECCEEeeecccCCHHHHHHHHHHHH
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFS--------------CTVEIGDIRYIGGAAKTKKEAEIKAARTA 163 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft--------------~tV~I~G~~~g~G~G~SKKeAKQ~AAk~A 163 (418)
....++.+.+.|-...+++|.+.++++.++.| .+|. .+|.+.+.....|.|...+.||..||+.|
T Consensus 1513 i~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A 1592 (1606)
T KOG0701|consen 1513 IKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAA 1592 (1606)
T ss_pred eecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHH
Confidence 34556689999999999999999988878777 4433 22333333345578999999999999999
Q ss_pred HHHHHhccc
Q 014809 164 LLAIQSSAS 172 (418)
Q Consensus 164 L~~L~~~~~ 172 (418)
++.|.....
T Consensus 1593 ~~ll~~~~~ 1601 (1606)
T KOG0701|consen 1593 LKLLKKLGL 1601 (1606)
T ss_pred HHHHHHhhh
Confidence 988876543
No 49
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=24.44 E-value=79 Score=39.24 Aligned_cols=73 Identities=26% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEE--------------EEEEECCEEeecccCCcChHHHHHHHHHH
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFR--------------STVIVDDVRYDSLPGFFNRKAAEQSAAEV 77 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ft--------------v~V~V~G~~~gsG~G~~SKKeAEq~AAk~ 77 (418)
.+..+..+.+.|-...|.+|-+..++ .++.|..+|. +.|.+.+.....|.| ..++.||..|++.
T Consensus 1513 i~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g-~~~~~aK~s~~k~ 1591 (1606)
T KOG0701|consen 1513 IKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEG-RNYRIAKASAAKA 1591 (1606)
T ss_pred eecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcc-hhhhhhhhhHHHH
Confidence 35556689999999999999999887 5677765543 234444544456778 7888899988888
Q ss_pred HHHHHHhcC
Q 014809 78 ALVELAKLG 86 (418)
Q Consensus 78 AL~~L~~~~ 86 (418)
|++.|....
T Consensus 1592 A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1592 ALKLLKKLG 1600 (1606)
T ss_pred HHHHHHHhh
Confidence 888877654
No 50
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=23.65 E-value=2.5e+02 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.028 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEE-EEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 16 FKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFR-STVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 16 pKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ft-v~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
-...||.++++.|+.. +.++.. +.. .-|.|. ++-.--+..+..|.| .||+.|.-.|...+++.+....
T Consensus 19 t~~~~q~~l~~~gitr-I~~~t~Ld~~-gIPv~~a~rp~~~~~~~~~GKG-at~~~A~vSAimE~~Er~sAe~ 88 (398)
T COG1944 19 TLAAFQPLLAALGITR-IEDITWLDRL-GIPVVWAVRPRALGLSVSQGKG-ATKAAARVSALMEALERLSAEY 88 (398)
T ss_pred HHHHHHHHHHhcCcee-eeeeeccccC-CCceEEEeeeccccceeecCCC-CCHHHHHHHHHHHHHHHhhccc
Confidence 4567888888888643 334433 211 123332 333333566778999 8999999999999999887665
No 51
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=21.22 E-value=1.1e+02 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=18.8
Q ss_pred EeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 57 RYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 57 ~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
.++.|.| .+++.|+++|-..+.+.|.
T Consensus 14 l~a~G~~-~~~~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 14 LYAVGSG-SSREQAKQDALANLAEQIS 39 (92)
T ss_pred EEEEEcc-cChHHHHHHHHHHHHHhee
Confidence 4678888 8888888877666666443
No 52
>PRK00394 transcription factor; Reviewed
Probab=20.22 E-value=7.3e+02 Score=23.36 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=69.0
Q ss_pred CCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCc-cCCCCC-C----CCCChhHHHHHHHHHcCCCC
Q 014809 44 EPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNE-CISQPI-H----ETGLCKNLLQEYAQKMNYAI 117 (418)
Q Consensus 44 ~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s-~~s~P~-~----e~~n~Ks~LQE~cQK~~l~i 117 (418)
.|.=++.|+-.|+.+..|. +|..+|+. |++..+..|...+-... ....-. + -...+.=.|..++...++.-
T Consensus 44 ~Pk~t~lIf~sGKiv~tGa--~S~~~a~~-a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L~~la~~~~~~~ 120 (179)
T PRK00394 44 DPKIAALIFRSGKVVCTGA--KSVEDLHE-AVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNLNAIAIGLGLEN 120 (179)
T ss_pred CCceEEEEEcCCcEEEEcc--CCHHHHHH-HHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcHHHHHHhcCcCC
Confidence 4556778888999887764 48888887 67888888877652110 000000 0 01112224777776653322
Q ss_pred CeEEEeeccCCC------CceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 118 PLYQCRKDEASG------KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 118 P~Y~~~e~~GP~------h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
-.|+=+. -|+ .|.-++.+.-.|+.+.+| ++|..+++. |.+..+..|+.
T Consensus 121 ~~YePe~--fPglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~~l~~ 174 (179)
T PRK00394 121 IEYEPEQ--FPGLVYRLDDPKVVVLLFGSGKLVITG-AKSEEDAEK-AVEKILEKLEE 174 (179)
T ss_pred cEECccc--CceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 3333211 111 144556666689888777 788888887 55666666654
Done!