Query 014809
Match_columns 418
No_of_seqs 251 out of 1918
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 3.3E-33 1.1E-37 255.3 16.6 156 13-172 12-175 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 100.0 2.4E-29 8.4E-34 239.2 16.4 157 10-173 18-202 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 3.7E-26 1.3E-30 217.6 19.4 148 13-170 3-226 (236)
4 2l2n_A Hyponastic leave 1; DSR 99.8 1.8E-20 6.2E-25 158.3 9.9 98 1-98 4-101 (103)
5 3adg_A F21M12.9 protein; HYL1, 99.8 2.9E-19 1E-23 141.3 10.1 70 14-83 3-72 (73)
6 3adj_A F21M12.9 protein; HYL1, 99.8 3.7E-19 1.3E-23 142.0 9.1 70 14-84 4-74 (76)
7 3adj_A F21M12.9 protein; HYL1, 99.8 6.1E-19 2.1E-23 140.8 9.2 71 99-169 3-74 (76)
8 3adl_A RISC-loading complex su 99.8 1.1E-18 3.8E-23 143.6 10.3 75 9-85 10-85 (88)
9 1di2_A XLRBPA, double stranded 99.8 6.3E-19 2.2E-23 137.8 8.3 67 15-83 1-68 (69)
10 3adg_A F21M12.9 protein; HYL1, 99.8 1.7E-18 5.8E-23 136.9 10.6 69 99-168 2-72 (73)
11 1uhz_A Staufen (RNA binding pr 99.8 1.3E-18 4.3E-23 143.5 10.2 73 10-84 2-75 (89)
12 2cpn_A TAR RNA-binding protein 99.8 2.3E-18 7.8E-23 142.0 10.9 74 10-85 12-86 (89)
13 1di2_A XLRBPA, double stranded 99.8 1.9E-18 6.6E-23 135.0 9.1 66 102-168 2-68 (69)
14 2dix_A Interferon-inducible do 99.8 4E-18 1.4E-22 138.8 10.7 72 11-85 5-77 (84)
15 3adl_A RISC-loading complex su 99.7 4.3E-18 1.5E-22 140.1 10.3 72 98-170 13-85 (88)
16 2cpn_A TAR RNA-binding protein 99.7 4.5E-18 1.6E-22 140.2 10.3 72 98-170 14-86 (89)
17 2khx_A Ribonuclease 3; drosha, 99.7 1.3E-18 4.5E-23 142.3 6.8 70 14-84 1-76 (85)
18 1ekz_A DSRBDIII, maternal effe 99.7 1.2E-18 4E-23 138.8 6.1 70 12-84 5-75 (76)
19 1uhz_A Staufen (RNA binding pr 99.7 7.5E-18 2.6E-22 138.9 10.4 72 98-170 4-76 (89)
20 2dix_A Interferon-inducible do 99.7 8.4E-18 2.9E-22 136.9 10.5 72 98-171 6-78 (84)
21 1x48_A Interferon-induced, dou 99.7 1.2E-17 4.1E-22 137.2 10.7 76 10-88 2-78 (88)
22 1x49_A Interferon-induced, dou 99.7 6.6E-18 2.3E-22 141.3 8.5 75 12-88 12-87 (97)
23 2khx_A Ribonuclease 3; drosha, 99.7 4.5E-18 1.6E-22 139.1 7.3 70 100-169 1-76 (85)
24 3llh_A RISC-loading complex su 99.7 1.1E-17 3.9E-22 137.7 9.0 74 10-86 10-84 (90)
25 1ekz_A DSRBDIII, maternal effe 99.7 2.8E-18 9.7E-23 136.6 5.1 70 98-169 5-75 (76)
26 1whq_A RNA helicase A; double- 99.7 9.4E-18 3.2E-22 141.0 8.1 75 12-88 4-79 (99)
27 1x49_A Interferon-induced, dou 99.7 1.4E-17 4.8E-22 139.3 8.7 74 98-172 12-86 (97)
28 2b7t_A Double-stranded RNA-spe 99.7 1.8E-17 6.3E-22 131.1 8.1 68 13-84 3-71 (73)
29 2l2n_A Hyponastic leave 1; DSR 99.7 3.6E-17 1.2E-21 138.1 9.9 74 98-172 15-90 (103)
30 3llh_A RISC-loading complex su 99.7 4.3E-17 1.5E-21 134.3 9.2 72 98-171 12-84 (90)
31 2b7t_A Double-stranded RNA-spe 99.7 4.9E-17 1.7E-21 128.6 8.4 68 99-169 3-71 (73)
32 1x47_A DGCR8 protein; structur 99.7 8.5E-17 2.9E-21 134.7 10.2 73 10-85 12-85 (98)
33 1x47_A DGCR8 protein; structur 99.7 1.2E-16 4E-21 133.9 11.0 74 98-172 14-87 (98)
34 1x48_A Interferon-induced, dou 99.7 1E-16 3.6E-21 131.7 10.2 71 99-172 5-77 (88)
35 1uil_A Double-stranded RNA-bin 99.7 6E-17 2.1E-21 139.0 9.1 73 13-87 25-102 (113)
36 2dmy_A Spermatid perinuclear R 99.7 9.9E-17 3.4E-21 134.0 9.9 72 11-86 13-85 (97)
37 1t4n_A Ribonuclease III; DSRBD 99.7 1.5E-17 5.1E-22 139.0 4.9 71 12-84 4-75 (94)
38 1whq_A RNA helicase A; double- 99.7 4.3E-17 1.5E-21 136.9 7.5 72 99-172 5-78 (99)
39 2dmy_A Spermatid perinuclear R 99.7 2.3E-16 8E-21 131.7 9.0 70 97-169 13-83 (97)
40 1t4o_A Ribonuclease III; RNT1P 99.7 9.8E-17 3.4E-21 138.8 6.6 72 12-85 6-78 (117)
41 2l33_A Interleukin enhancer-bi 99.6 3E-16 1E-20 130.2 8.7 71 99-172 13-84 (91)
42 1whn_A Hypothetical protein ri 99.6 4.5E-16 1.5E-20 136.5 9.8 73 11-85 23-95 (128)
43 1uil_A Double-stranded RNA-bin 99.6 3.9E-16 1.3E-20 133.9 8.4 70 100-171 26-101 (113)
44 1whn_A Hypothetical protein ri 99.6 2E-15 7E-20 132.3 12.5 70 98-170 24-95 (128)
45 2l33_A Interleukin enhancer-bi 99.6 3.1E-16 1E-20 130.2 6.7 69 14-86 14-83 (91)
46 1t4n_A Ribonuclease III; DSRBD 99.6 1.9E-16 6.5E-21 132.3 4.8 70 99-170 5-76 (94)
47 1t4o_A Ribonuclease III; RNT1P 99.6 4.7E-16 1.6E-20 134.6 5.8 72 99-172 7-80 (117)
48 2ljh_A Double-stranded RNA-spe 99.6 9.5E-16 3.3E-20 132.1 7.5 69 11-86 34-103 (114)
49 2b7v_A Double-stranded RNA-spe 99.6 2.6E-15 9.1E-20 117.9 8.7 67 12-85 2-69 (71)
50 2ljh_A Double-stranded RNA-spe 99.6 1.8E-15 6.3E-20 130.3 7.4 69 98-172 35-104 (114)
51 2b7v_A Double-stranded RNA-spe 99.6 7.7E-15 2.6E-19 115.3 8.6 66 99-170 3-69 (71)
52 1qu6_A Protein kinase PKR; dsR 99.6 4E-15 1.4E-19 135.7 7.2 72 99-171 12-84 (179)
53 3p1x_A Interleukin enhancer-bi 99.5 4.4E-14 1.5E-18 112.6 8.0 68 102-172 6-74 (75)
54 2nug_A Ribonuclease III, RNAse 99.5 2.6E-14 8.8E-19 133.7 7.8 70 13-84 149-219 (221)
55 3p1x_A Interleukin enhancer-bi 99.5 3.7E-14 1.3E-18 113.1 7.3 68 12-86 5-73 (75)
56 1o0w_A Ribonuclease III, RNAse 99.5 5.5E-14 1.9E-18 134.3 9.3 72 12-84 177-249 (252)
57 2nug_A Ribonuclease III, RNAse 99.5 5.1E-14 1.7E-18 131.7 8.4 69 99-168 149-218 (221)
58 2yt4_A Protein DGCR8; DSRBD, R 99.5 1.1E-13 3.7E-18 131.6 10.3 72 98-170 20-91 (232)
59 1o0w_A Ribonuclease III, RNAse 99.5 7.6E-14 2.6E-18 133.4 9.0 72 99-170 178-250 (252)
60 3n3w_A Ribonuclease III; nucle 99.4 2.1E-14 7.2E-19 137.4 0.1 72 12-84 175-247 (248)
61 2a11_A Ribonuclease III, RNAse 99.4 3.5E-14 1.2E-18 134.5 0.0 73 13-86 161-233 (242)
62 3n3w_A Ribonuclease III; nucle 99.4 6.3E-14 2.2E-18 134.1 0.0 72 98-169 175-247 (248)
63 2a11_A Ribonuclease III, RNAse 99.3 1.7E-13 5.9E-18 129.7 0.0 73 99-172 161-234 (242)
64 2l3j_A Double-stranded RNA-spe 99.3 6.5E-12 2.2E-16 119.4 8.6 67 12-85 159-226 (236)
65 3rv0_A K. polysporus DCR1; RNA 99.0 4.9E-11 1.7E-15 119.4 0.0 69 12-86 252-322 (341)
66 3rv0_A K. polysporus DCR1; RNA 99.0 6.1E-11 2.1E-15 118.7 0.0 71 98-172 252-323 (341)
67 3c4b_A Endoribonuclease dicer; 98.6 4E-08 1.4E-12 93.8 5.8 66 15-84 198-263 (265)
68 3c4b_A Endoribonuclease dicer; 98.6 4.3E-08 1.5E-12 93.6 6.0 65 101-169 198-263 (265)
69 2kou_A Dicer-like protein 4; A 95.7 0.022 7.6E-07 47.6 6.8 70 100-172 4-83 (102)
70 2kou_A Dicer-like protein 4; A 94.8 0.068 2.3E-06 44.7 7.1 76 13-90 3-86 (102)
71 2db2_A KIAA0890 protein; DSRM 86.2 1.4 4.7E-05 37.9 6.1 71 98-172 15-92 (119)
72 3htx_A HEN1; HEN1, small RNA m 85.7 0.52 1.8E-05 52.8 4.1 68 100-171 17-97 (950)
73 3htx_A HEN1; HEN1, small RNA m 83.1 0.96 3.3E-05 50.7 4.8 69 12-85 15-96 (950)
74 2db2_A KIAA0890 protein; DSRM 74.7 6.5 0.00022 33.8 6.3 71 12-88 15-93 (119)
75 3bid_A UPF0339 protein NMB1088 37.8 73 0.0025 24.3 5.8 45 33-85 2-47 (64)
76 2z8u_A Tata-box-binding protei 22.4 4.3E+02 0.015 23.8 10.0 117 44-169 56-184 (188)
77 2qvw_A GLP_546_48378_50642; di 22.1 17 0.00058 39.9 -0.4 45 12-86 445-499 (756)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=100.00 E-value=3.3e-33 Score=255.30 Aligned_cols=156 Identities=28% Similarity=0.344 Sum_probs=136.2
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCCCcc
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKVNEC 91 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~~s~ 91 (418)
..|||+.||||||++++. |.|+++. +||+|.+.|++.|+|+|..++.|.| +|||+|||+||+.||..|.......++
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G-~sKK~Aeq~AA~~al~~L~~~~~~~~p 89 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNAAAKLAVEILNKEKKAVSP 89 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEEC-CSSHHHHHHHHHHHHHHHHSCCSCCSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCC-CCHHHHHHHHHHHHHHHHhcccccCCC
Confidence 368999999999999986 8999986 8999999999999999998999999 999999999999999999876543221
Q ss_pred CCCC------CCCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHH
Q 014809 92 ISQP------IHETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTAL 164 (418)
Q Consensus 92 ~s~P------~~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL 164 (418)
...+ .....||+++||||||++++.+ .|++. ..||+| +.|+|+|.|+|..|+.|.|+|||+||+.||+.||
T Consensus 90 ~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~-~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al 167 (179)
T 1qu6_A 90 LLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY 167 (179)
T ss_dssp SSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEE-EECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred ccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEec-CcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence 1111 1146799999999999999987 89876 468999 9999999999998999999999999999999999
Q ss_pred HHHHhccc
Q 014809 165 LAIQSSAS 172 (418)
Q Consensus 165 ~~L~~~~~ 172 (418)
..|.....
T Consensus 168 ~~L~~~~~ 175 (179)
T 1qu6_A 168 LQILSEET 175 (179)
T ss_dssp HHHHHCCC
T ss_pred HHHhcccC
Confidence 99987654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=239.22 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=127.0
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV 88 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~ 88 (418)
....+|||+.||||||++++.+|.|+++. +||+ +.|+|.|+|+|..|+.|.| +|||+|||.||+.||..|....+.
T Consensus 18 ~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G-~SKK~Aeq~AA~~aL~~L~~~~~~ 94 (232)
T 2yt4_A 18 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTA-SSKKLAKNKAARATLEILIPDFVK 94 (232)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHSTTTTT
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCC-CCHHHHHHHHHHHHHHHHHhhccc
Confidence 34678999999999999999999999987 7987 9999999999999999999 999999999999999999764221
Q ss_pred CccC-----------------CCCC-------CCCCChhHHHHHHHHHcCCCCCeEE--EeeccCCCC-ceEEEEEEECC
Q 014809 89 NECI-----------------SQPI-------HETGLCKNLLQEYAQKMNYAIPLYQ--CRKDEASGK-VQFSCTVEIGD 141 (418)
Q Consensus 89 ~s~~-----------------s~P~-------~e~~n~Ks~LQE~cQK~~l~iP~Y~--~~e~~GP~h-~~Ft~tV~I~G 141 (418)
..+. ..+. ....|||++||| ||++++++|.|. +....||+| +.|+|+|. +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~ 171 (232)
T 2yt4_A 95 QTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K 171 (232)
T ss_dssp C--------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T
T ss_pred cCCccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E
Confidence 0000 0000 134699999999 999999999999 666679999 99999886 4
Q ss_pred EEeeecccCCHHHHHHHHHHHHHHHHHhcccc
Q 014809 142 IRYIGGAAKTKKEAEIKAARTALLAIQSSASE 173 (418)
Q Consensus 142 ~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~~ 173 (418)
.++.|.|+|||+|||.||+.||..|......
T Consensus 172 -~~~~G~G~sKK~Aeq~AA~~aL~~L~~~~~~ 202 (232)
T 2yt4_A 172 -HTVRGWCKNKRVGKQLASQKILQLLHPHVKN 202 (232)
T ss_dssp -EEEEEEESSHHHHHHHHHHHHHHHHSTTCCB
T ss_pred -EEEEEEeCCHHHHHHHHHHHHHHHHHhhccc
Confidence 5678999999999999999999999876553
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.94 E-value=3.7e-26 Score=217.56 Aligned_cols=148 Identities=24% Similarity=0.277 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC---
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV--- 88 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~--- 88 (418)
..+||+.|++|++. +..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||+||+.||..|......
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~l~~~~~~~~~ 78 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSG-PTKKKAKLHAAEKALRSFVQFPNASEA 78 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEE-SHHHHHHHHHHHHHHHHHTTCSSCSCC
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEec-CChHHHHHHHHHHHHHHHHhccccccc
Confidence 35899999999987 4679999987 89999999999999999886 9999 899999999999999999763210
Q ss_pred --------------C-cc-----------C-------------------------CC--------------CC------C
Q 014809 89 --------------N-EC-----------I-------------------------SQ--------------PI------H 97 (418)
Q Consensus 89 --------------~-s~-----------~-------------------------s~--------------P~------~ 97 (418)
. +. . .. |. .
T Consensus 79 ~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~ 158 (236)
T 2l3j_A 79 HLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPP 158 (236)
T ss_dssp CCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCC
T ss_pred hhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCC
Confidence 0 00 0 00 00 1
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||++|||| +..|.|+++.+.||.| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|...
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 347999999999 5789999988889999 99999999999986 8999999999999999999999753
No 4
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=1.8e-20 Score=158.31 Aligned_cols=98 Identities=72% Similarity=1.120 Sum_probs=68.2
Q ss_pred CCCCCCccCCCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHH
Q 014809 1 MPTNEGFSGVSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALV 80 (418)
Q Consensus 1 ~~~~~~~~~~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~ 80 (418)
|++++........+|||+.||||||++++.+|.|+++.+||+|.+.|++.|+|+|..++.|.|++|||+|||+||+.||.
T Consensus 4 ~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~ 83 (103)
T 2l2n_A 4 MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 83 (103)
T ss_dssp ---------------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHH
T ss_pred chhhhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 67788888889999999999999999999999999998899999999999999999999999944999999999999999
Q ss_pred HHHhcCCCCccCCCCCCC
Q 014809 81 ELAKLGKVNECISQPIHE 98 (418)
Q Consensus 81 ~L~~~~~~~s~~s~P~~e 98 (418)
.|.....+.+++..|+++
T Consensus 84 ~L~~~~~~~~~~~~~~~~ 101 (103)
T 2l2n_A 84 ELAKSSELSQCVSQPVHE 101 (103)
T ss_dssp HHHHHC------------
T ss_pred HHhccccccccccccccc
Confidence 999888777777666543
No 5
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.79 E-value=2.9e-19 Score=141.28 Aligned_cols=70 Identities=80% Similarity=1.142 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
.|||+.||||||++++.+|.|+++.+||+|.+.|+|.|+|+|..++.|.|++|||+|||+||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999998899999999999999999999999945999999999999999884
No 6
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.78 E-value=3.7e-19 Score=141.97 Aligned_cols=70 Identities=33% Similarity=0.426 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
.|||+.||||||++++.+|.|+++. +||+|.+.|++.|+|+|..++.|.| +|||+|||.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G-~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAAT-RTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCB-SSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999987 8999999999999999999999999 99999999999999999864
No 7
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.78 E-value=6.1e-19 Score=140.76 Aligned_cols=71 Identities=76% Similarity=1.179 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
..|||+.||||||++++.+|.|+++...||+| +.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999988789999 999999999999999999999999999999999999964
No 8
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=143.61 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=69.0
Q ss_pred CCCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 9 GVSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 9 ~~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
......|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|...
T Consensus 10 ~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 10 LVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSG-TSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEee-CCHHHHHHHHHHHHHHHHHcc
Confidence 345568999999999999999999999987 899999999999999998 899999 999999999999999999753
No 9
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.77 E-value=6.3e-19 Score=137.80 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 15 VFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 15 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
+||+.||||||++++.+|.|+++. +||+|.+.|++.|+|+|. ++.|.| +|||+|||.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G-~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSG-TSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeec-CCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999987 899999999999999998 999999 9999999999999999885
No 10
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.77 E-value=1.7e-18 Score=136.91 Aligned_cols=69 Identities=33% Similarity=0.451 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHH
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~ 168 (418)
..|||+.||||||++++..|.|+++.+ ||+| +.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999999875 9999 9999999999999999999 9999999999999999885
No 11
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.77 E-value=1.3e-18 Score=143.47 Aligned_cols=73 Identities=27% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
++..+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|..
T Consensus 2 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 2 SSGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTG-PNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp CCSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEee-CCHHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999987 899999999999999996 899999 99999999999999999964
No 12
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.76 E-value=2.3e-18 Score=141.96 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
....+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| +|||+|||.||+.||..|...
T Consensus 12 ~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G-~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 12 QQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSG-TSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeee-CCHHHHHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999987 899999999999999998 899999 999999999999999999753
No 13
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.76 E-value=1.9e-18 Score=135.03 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~ 168 (418)
||+.||||||++++..|.|+++...||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999987789999 999999999998 9999999999999999999999986
No 14
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.75 E-value=4e-18 Score=138.80 Aligned_cols=72 Identities=32% Similarity=0.296 Sum_probs=66.7
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
...+|||+.||||||+++ ..|.|+++. +||+|.+.|+|.|+|+| .++.|.| +|||+|||+||+.||..|...
T Consensus 5 ~~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G-~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 5 SSGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEG-TSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECS-SCTTHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeee-CCHHHHHHHHHHHHHHHHhcc
Confidence 356899999999999998 689999987 89999999999999999 8899999 999999999999999999753
No 15
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=140.12 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=67.1
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||+.||||||++++..|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|...
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 457999999999999999999999988789999 999999999997 999999999999999999999999743
No 16
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.75 E-value=4.5e-18 Score=140.16 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||++||||||++++.+|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999987789999 999999999998 999999999999999999999999743
No 17
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=142.25 Aligned_cols=70 Identities=29% Similarity=0.274 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHH-----cCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 14 YVFKSRLQEYAQK-----AGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 14 ~npKS~LQE~cQK-----~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
+|||+.||||||+ +++.+|.|+++. +||+|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G-~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG-PSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEE-SSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHhH
Confidence 5899999999998 467899999987 8999999999999999999999999 99999999999999987643
No 18
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.74 E-value=1.2e-18 Score=138.79 Aligned_cols=70 Identities=29% Similarity=0.358 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
...|||+.||||||++++. |.|+++. +||+|.+.|+|.|+|+| .++.|.| +|||+|||.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G-~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEG-NGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECC-CSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999998 9999987 89999999999999999 8899999 99999999999999998853
No 19
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=7.5e-18 Score=138.85 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||++||||||++++..|.|+++...||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 357999999999999999999999987789999 999999999996 899999999999999999999999744
No 20
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.74 E-value=8.4e-18 Score=136.87 Aligned_cols=72 Identities=28% Similarity=0.462 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
...|||+.||||||+++ ..|.|+++.+.||.| +.|+|.|.|+| .++.|.|+|||+|||.||+.||..|....
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 45799999999999998 689999987789999 99999999999 88999999999999999999999997444
No 21
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.73 E-value=1.2e-17 Score=137.25 Aligned_cols=76 Identities=25% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCC-cEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEP-WFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV 88 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~-~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~ 88 (418)
+....|||+.||||||++++.+ .|+ ..+||+|.+ +|+|.|+|+|..++.|.| +|||+|||.||+.||..|....+.
T Consensus 2 ~~~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~ 78 (88)
T 1x48_A 2 SSGSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSG-VTKQEAKQLAAKEAYQKLLKSPPK 78 (88)
T ss_dssp CSSSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEE-SSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566899999999999999966 999 668999999 799999999999999999 999999999999999999876543
No 22
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.73 E-value=6.6e-18 Score=141.31 Aligned_cols=75 Identities=25% Similarity=0.466 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV 88 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~ 88 (418)
...|||+.||||||++++. |.|+++. .||+|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||..|......
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~ 87 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKG-RSKQEARNAAAKLAVDILDNENKV 87 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEE-SSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHHhhcCC
Confidence 4579999999999999996 7999876 8999999999999999999999999 999999999999999999765543
No 23
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=139.07 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHH-----cCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 100 GLCKNLLQEYAQK-----MNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 100 ~n~Ks~LQE~cQK-----~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
.|||+.||||||+ +++..|.|+++.+.||+| +.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 4899999999998 467899999988789999 999999999999999999999999999999999988754
No 24
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=137.70 Aligned_cols=74 Identities=41% Similarity=0.476 Sum_probs=59.1
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
....+|||+.||||||+++. .|.|+++. +||+|.+.|++.|+|+|. ++.|.| +|||+|||.||+.||..|....
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G-~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQG-PSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHC---
T ss_pred cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEe-CCHHHHHHHHHHHHHHHHHhcc
Confidence 34678999999999999985 89999976 899999999999999998 689999 9999999999999999987643
No 25
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.72 E-value=2.8e-18 Score=136.59 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
...|||+.||||||++++. |.|.++...||+| +.|+|.|.|+| .++.|.|+|||+|||.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999 9999987789999 99999999999 889999999999999999999999864
No 26
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.72 E-value=9.4e-18 Score=140.95 Aligned_cols=75 Identities=24% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECC-EEeecccCCcChHHHHHHHHHHHHHHHHhcCCC
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDD-VRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV 88 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G-~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~ 88 (418)
...|||+.||||||++ +..|.|++..+||+|.+.|+|.|+|+| ..++.|.| +|||+|||.||+.||..|......
T Consensus 4 g~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~~~~ 79 (99)
T 1whq_A 4 GSSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNS-TNKKDAQSNAARDFVNYLVRINEV 79 (99)
T ss_dssp CCCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEE-SSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEecc-CCHHHHHHHHHHHHHHHHHhhCCC
Confidence 3579999999999999 889999995589999999999999999 68899999 999999999999999999876643
No 27
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.71 E-value=1.4e-17 Score=139.34 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...|||++||||||++++. |.|+++...||.| +.|+|.|.|+|+.|+.|.|+|||+|||.||+.||..|.....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5679999999999999997 8999887789999 999999999999999999999999999999999999975544
No 28
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.71 E-value=1.8e-17 Score=131.06 Aligned_cols=68 Identities=28% Similarity=0.345 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
..|||+.||||||+ +.+|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||+||+.||..|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSG-PTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEE-SSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Eeec-CCHHHHHHHHHHHHHHHHhc
Confidence 46999999999996 6789999987 89999999999999999887 9999 99999999999999999875
No 29
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.6e-17 Score=138.13 Aligned_cols=74 Identities=32% Similarity=0.420 Sum_probs=65.9
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...|||+.||||||++++.+|.|+++.+ ||.| +.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.....
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 4679999999999999999999999975 9999 9999999999999999999 99999999999999999986554
No 30
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=134.26 Aligned_cols=72 Identities=31% Similarity=0.432 Sum_probs=59.9
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
...|||+.||||||+++. .|.|+++...||.| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|....
T Consensus 12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999985 79999987789999 999999999997 6889999999999999999999997543
No 31
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.69 E-value=4.9e-17 Score=128.63 Aligned_cols=68 Identities=25% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
..|||+.||||||+ +..|.|+++...||+| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 36899999999996 7889999987789999 99999999999887 899999999999999999999874
No 32
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=8.5e-17 Score=134.71 Aligned_cols=73 Identities=32% Similarity=0.320 Sum_probs=67.5
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 10 VSNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 10 ~~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
....+|||+.||||||++++.+|.|+++. +||+ +.|+|.|+|+|..|+.|.| +|||+|||.||+.||..|...
T Consensus 12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTA-SSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHCSS
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999987 7887 9999999999999999999 999999999999999999643
No 33
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=1.2e-16 Score=133.86 Aligned_cols=74 Identities=28% Similarity=0.336 Sum_probs=68.7
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...|||+.||||||++++..|.|.++...||. +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|.....
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~-~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 87 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFV 87 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC-CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhh
Confidence 56799999999999999999999998878888 999999999999999999999999999999999999975443
No 34
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.68 E-value=1e-16 Score=131.66 Aligned_cols=71 Identities=28% Similarity=0.415 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-c-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-V-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~-~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||++||||||++++.+ .|+ . ..||.| + +|+|.|.|+|..|+.|.|+|||+|||.||+.||..|....+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~-~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-Q-CEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-E-CCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-E-eeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4699999999999999976 999 4 579999 7 69999999999999999999999999999999999987655
No 35
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.68 E-value=6e-17 Score=138.99 Aligned_cols=73 Identities=30% Similarity=0.353 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEE-----CCEEeecccCCcChHHHHHHHHHHHHHHHHhcCC
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIV-----DDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGK 87 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V-----~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~ 87 (418)
..|||+.||||||++++ +|.|++...||+|.+.|+|.|+| +|..++.|.| +|||+|||.||+.||..|.....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G-~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG-SNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCC-SSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEee-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 46999999999999999 99999655999999999999999 6888899999 99999999999999999987654
No 36
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.68 E-value=9.9e-17 Score=133.99 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=66.0
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
...+|||+.||||||++ .+|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~aL~~L~~~~ 85 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASG-PSKKTAKLHVAVKVLQAMGYPT 85 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEee-CCHHHHHHHHHHHHHHHhCCCC
Confidence 45689999999999996 689999987 89999999999999999998 9999 9999999999999999996533
No 37
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.68 E-value=1.5e-17 Score=139.03 Aligned_cols=71 Identities=25% Similarity=0.068 Sum_probs=65.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCE-EeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~-~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
...||||.||||||+++ .+|.|+++.+||+|++.|++.|+|+|. .++.|.| +|||+|||.||+.||..|.-
T Consensus 4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G-~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 4 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVG-RNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp SCHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEE-SSHHHHHHHHHHHHHHCHHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEe-CCHHHHHHHHHHHHHHHHHH
Confidence 45799999999999974 689999988899999999999999998 8999999 99999999999999986653
No 38
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.68 E-value=4.3e-17 Score=136.90 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGD-IRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G-~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||++||||||++ +..|.|++ ...||.| +.|+|.|.|+| ..++.|.|+|||+|||.||+.||+.|.....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 469999999999999 88999999 6689999 99999999999 6899999999999999999999999986553
No 39
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.65 E-value=2.3e-16 Score=131.74 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 97 HETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 97 ~e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
....|||+.||||||++ ..|.|+++.+.||.| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 35689999999999996 789999987789999 99999999999998 899999999999999999999964
No 40
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.65 E-value=9.8e-17 Score=138.83 Aligned_cols=72 Identities=26% Similarity=0.086 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCE-EeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDV-RYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~-~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
...|||+.||||||+.+ .+|.|+++.+||+|.+.|++.|+|+|. .++.|.| +|||+|||.||+.||..|...
T Consensus 6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G-~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVG-RNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp CCTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEE-SSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEe-CCHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999954 789999988899999999999999998 8999999 999999999999999876543
No 41
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=130.23 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..++|+.||||||+++ .|.|+++.+.||+| ++|+|.|.|+|..+ .|.|+|||+|||.||+.||..|.....
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3589999999999998 88999988789999 99999999999887 899999999999999999999986655
No 42
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.64 E-value=4.5e-16 Score=136.50 Aligned_cols=73 Identities=32% Similarity=0.353 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
...+|||+.||||||++++.+|.|+++.+ +|.+.|++.|+|+|..|+.|.|++|||+|||+||+.||..|...
T Consensus 23 ~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 35689999999999999999999999987 89999999999999999999996699999999999999999643
No 43
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.63 E-value=3.9e-16 Score=133.92 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=64.3
Q ss_pred CChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 100 GLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEI-----GDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I-----~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
.|||++||||||++++ .|.|++ ...||.| +.|+|.|.| +|..++.|.|+|||+|||.||+.||..|....
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~-~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKY-TQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEE-EEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCC-CCeEEE-eeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999 999995 5579999 999999999 68889999999999999999999999998653
No 44
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.63 E-value=2e-15 Score=132.34 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAA-KTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G-~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||++||||||++++.+|.|.++.. .| +.|+|.|.|+|..|+.|.| +|||+|||.||+.||+.|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999999999999864 66 9999999999999999999 999999999999999999643
No 45
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=130.15 Aligned_cols=69 Identities=32% Similarity=0.280 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 14 YVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 14 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
.++|+.||||||+++ .|.|+++. +||+|.+.|+|.|+|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G-~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAG-SNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHhhcC
Confidence 489999999999998 88999987 89999999999999999887 9999 9999999999999999997543
No 46
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.62 E-value=1.9e-16 Score=132.35 Aligned_cols=70 Identities=20% Similarity=0.058 Sum_probs=63.4
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
..|||+.||||||+. ...|.|.++.. ||+| +.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.-.
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 459999999999997 46899999865 8999 999999999998 8999999999999999999999887643
No 47
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.60 E-value=4.7e-16 Score=134.56 Aligned_cols=72 Identities=19% Similarity=0.042 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDI-RYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~-~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||+.||||||+. ...|.|.++.. ||+| +.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.-...
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~K 80 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 80 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999994 47899999875 9999 999999999998 899999999999999999999998876665
No 48
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.60 E-value=9.5e-16 Score=132.09 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=63.4
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 11 SNCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 11 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
...+|||+.||||||+ |.|+++. +||+|.+.|++.|+|+|..| .|.| +|||+|||+||+.||+.|....
T Consensus 34 ~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G-~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 34 PQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQG-RSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHHcCC
Confidence 3568999999999984 8999987 89999999999999999999 9999 9999999999999999997644
No 49
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.59 E-value=2.6e-15 Score=117.93 Aligned_cols=67 Identities=30% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
..+||++.||||| ..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|...
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G-~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSG-RNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEE-SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEee-CCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999994 689999987 89999999999999999876 8999 999999999999999998753
No 50
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.8e-15 Score=130.33 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...|||++||||||+ |.|+++.+.||.| +.|+|.|.|+|..| .|.|+|||+|||.||+.||+.|.....
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 467999999999994 8999987789999 99999999999999 899999999999999999999986554
No 51
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.56 E-value=7.7e-15 Score=115.27 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
..||+++||||| ..|.|+++...||+| +.|+|.|.|+|..+ .|.|+|||+|||.||+.||..|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 579999999994 689999988889999 99999999999876 8999999999999999999998753
No 52
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.55 E-value=4e-15 Score=135.68 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=66.9
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhcc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSA 171 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~ 171 (418)
..|||++||||||++++. |.|++....||.| +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|....
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~ 84 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK 84 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 479999999999999997 8999987789999 99999999999889999999999999999999999998543
No 53
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=112.63 Aligned_cols=68 Identities=25% Similarity=0.269 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 102 CKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 102 ~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
.|+.|++|+|.+ ..|.|++....||+| +.|++.|.|+|..+ .|.|+|||+|||.||+.||+.|....+
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 344555666654 588999988889999 99999999999988 899999999999999999999976543
No 54
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.50 E-value=2.6e-14 Score=133.71 Aligned_cols=70 Identities=33% Similarity=0.339 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
..|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|. ++.|.| .|||+||+.||+.||..|..
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G-~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEG-KSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEE-SSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEec-CCHHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999999987 899999999999999999 999999 99999999999999998853
No 55
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=113.05 Aligned_cols=68 Identities=31% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
..+||++.|+|+ + ..|.|+++. +||+|++.|++.|.|+|..+ .|.| +|||+|||.||+.||..|....
T Consensus 5 ~~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G-~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 5 HGKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAG-SNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp -CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEE-CCHHHHHHHHHHHHHHHHHccC
Confidence 345565555555 3 488999987 89999999999999999988 9999 9999999999999999987543
No 56
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.49 E-value=5.5e-14 Score=134.31 Aligned_cols=72 Identities=28% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
...|||+.||||||++++..|.|+++. +||+|.+.|+|.|+|+|..++.|.| .|||+|||.||+.||..|..
T Consensus 177 ~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 177 MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKG-RTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEE-SSHHHHHHHHHHHHHHHHC-
T ss_pred cccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999987 8999999999999999999999999 89999999999999999864
No 57
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.48 E-value=5.1e-14 Score=131.71 Aligned_cols=69 Identities=29% Similarity=0.288 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHH
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQ 168 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~ 168 (418)
..|||+.||||||++++..|.|.+....||+| +.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 46999999999999999999999987789999 999999999999 9999999999999999999999986
No 58
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=131.59 Aligned_cols=72 Identities=29% Similarity=0.360 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
...|||+.||||||++++..|.|.+....||+ +.|+|.|.|+|..|+.|.|+|||+|||.||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~-~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT-SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC-CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999998778988 9999999999999999999999999999999999999764
No 59
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.47 E-value=7.6e-14 Score=133.37 Aligned_cols=72 Identities=29% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
..|||+.||||||++++..|.|.+....||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||..|...
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 46999999999999999999999987789999 9999999999999999999999999999999999999654
No 60
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.40 E-value=2.1e-14 Score=137.40 Aligned_cols=72 Identities=32% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
..+|||+.||||||++++.+|.|+++. +||+|.+.|+|.|+|+|..++.|.| .|||+||+.||+.||+.|..
T Consensus 175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIA-GSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999986 8999999999999999999999999 99999999999999998864
No 61
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.38 E-value=3.5e-14 Score=134.51 Aligned_cols=73 Identities=36% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 13 CYVFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
..|||+.||||||++++..|.|+++.+||+|.+.|+|.|+|+|..++.|.| .|||+||+.||+.||..|....
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G-~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG-RSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeee-CCHHHHHHHHHHHHHHHHhhcc
Confidence 579999999999999999999999889999999999999999998999999 8999999999999999997654
No 62
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.36 E-value=6.3e-14 Score=134.11 Aligned_cols=72 Identities=25% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 98 ETGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
...|||+.||||||++++..|.|.+....||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|+.
T Consensus 175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 457999999999999999999999987789999 999999999999999999999999999999999998864
No 63
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.7e-13 Score=129.72 Aligned_cols=73 Identities=29% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 99 TGLCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 99 ~~n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
..|||+.||||||++++..|.|.+.. .||.| +.|+|.|.|+|..++.|.|.|||+|||.||+.||+.|.....
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~~ 234 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDN 234 (242)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhccc
Confidence 56999999999999999999999987 79999 999999999999999999999999999999999999976553
No 64
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.27 E-value=6.5e-12 Score=119.45 Aligned_cols=67 Identities=30% Similarity=0.316 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
...|||++|||| +..|.|+++. +||+|.+.|++.|+|+|..+ .|.| +|||+|||.||+.||..|...
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G-~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSG-RNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEE-SSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-Eeee-CCHHHHHHHHHHHHHHHHccc
Confidence 357999999999 4689999887 89999999999999999976 9999 999999999999999999653
No 65
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.98 E-value=4.9e-11 Score=119.40 Aligned_cols=69 Identities=26% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHcCCCC-CeEEEee-cCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcC
Q 014809 12 NCYVFKSRLQEYAQKAGIPT-PVYETIK-EGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLG 86 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~l-P~Yev~~-eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~ 86 (418)
...|||+.||||||++++.. |.|+++. .|| |++.|+|+|..++.|.| .|||+|||.||+.||+.|....
T Consensus 252 ~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G-~SKK~AEq~AA~~AL~~L~~~~ 322 (341)
T 3rv0_A 252 LNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEG-NSIREAEHRAAMKVLENDELLR 322 (341)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEe-CCHHHHHHHHHHHHHHHhhhhh
Confidence 45799999999999998765 6999987 665 99999999999999999 8999999999999999887643
No 66
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.97 E-value=6.1e-11 Score=118.72 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHcCCCC-CeEEEeeccCCCCceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHhccc
Q 014809 98 ETGLCKNLLQEYAQKMNYAI-PLYQCRKDEASGKVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQSSAS 172 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l~i-P~Y~~~e~~GP~h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~~~ 172 (418)
...|||+.||||||++++.. |.|.+....|| |++.|.|+|..++.|.|.|||+|||.||+.||+.|.....
T Consensus 252 ~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k 323 (341)
T 3rv0_A 252 LNKNAKNELAELLQINKLGHKLHYRKLTEMPP----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRK 323 (341)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEEEeccCC----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhh
Confidence 35799999999999999876 58998765564 9999999999999999999999999999999999986544
No 67
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.58 E-value=4e-08 Score=93.82 Aligned_cols=66 Identities=23% Similarity=0.101 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 15 VFKSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 15 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
+||+.||||+|.... .+.|.. .++.|.+.|+|.|+|+|..++.|.| +|||+|||.||+.||+.|..
T Consensus 198 ~~k~~l~el~~~~~~-~~~~~~--~~~~~~~~f~v~v~v~~~~~~~G~G-~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKFSP--AERTYDGKVRVTVEVVGKGKFKGVG-RSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEECC--CEECTTSCEEEEEEETTTEEEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccC-Cceeee--ccccCCCcEEEEEEEecceEEEEee-CCHHHHHHHHHHHHHHHHhh
Confidence 344455555554432 223332 3457899999999999998999999 89999999999999999865
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.58 E-value=4.3e-08 Score=93.59 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHcCCCCCeEEEeeccCCCC-ceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 101 LCKNLLQEYAQKMNYAIPLYQCRKDEASGK-VQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 101 n~Ks~LQE~cQK~~l~iP~Y~~~e~~GP~h-~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
++|+.||||+|.... .+.|.. .++.| +.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus 198 ~~k~~l~el~~~~~~-~~~~~~---~~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKFSP---AERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEECC---CEECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccC-Cceeee---ccccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 344455555554432 233332 23456 999999999999999999999999999999999999964
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.72 E-value=0.022 Score=47.64 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEECC-----EEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 100 GLCKNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIGD-----IRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 100 ~n~Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~G-----~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
.+.+++|+.||++.-. ..|.|.+..... ....| |+|.+-. ..++ -.-.||+.||+.||-+|+..|..
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g-~~~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIES-SLLPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeC-CccccHHHHHHHHHHHHHHHHHH
Confidence 4578999999998743 468999764322 12467 9988732 1222 24499999999999999999987
Q ss_pred ccc
Q 014809 170 SAS 172 (418)
Q Consensus 170 ~~~ 172 (418)
..-
T Consensus 81 ~G~ 83 (102)
T 2kou_A 81 LGV 83 (102)
T ss_dssp HCS
T ss_pred CCC
Confidence 764
No 70
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=94.85 E-value=0.068 Score=44.66 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHcCC-----CCCeEEEeecCCCCCCcEEEEEEECCEE-e--ecccCCcChHHHHHHHHHHHHHHHHh
Q 014809 13 CYVFKSRLQEYAQKAGI-----PTPVYETIKEGPSHEPWFRSTVIVDDVR-Y--DSLPGFFNRKAAEQSAAEVALVELAK 84 (418)
Q Consensus 13 ~~npKS~LQE~cQK~g~-----~lP~Yev~~eGP~H~~~Ftv~V~V~G~~-~--gsG~G~~SKKeAEq~AAk~AL~~L~~ 84 (418)
..+.++.|+.||++.-- ..|.|.+..... ....| |+|.+-... + ..|.-..||+.||+.||-+|...|.+
T Consensus 3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHH
Confidence 34678999999999742 368999765111 12367 888875311 1 12322379999999999999999999
Q ss_pred cCCCCc
Q 014809 85 LGKVNE 90 (418)
Q Consensus 85 ~~~~~s 90 (418)
.+..++
T Consensus 81 ~G~Ldd 86 (102)
T 2kou_A 81 LGVLND 86 (102)
T ss_dssp HCSCTT
T ss_pred CCCCcc
Confidence 887643
No 71
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.16 E-value=1.4 Score=37.92 Aligned_cols=71 Identities=23% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCChhHHHHHHHHHcCC-----CCCeEEEeeccCCCCceEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHHHhc
Q 014809 98 ETGLCKNLLQEYAQKMNY-----AIPLYQCRKDEASGKVQFSCTVEIG--DIRYIGGAAKTKKEAEIKAARTALLAIQSS 170 (418)
Q Consensus 98 e~~n~Ks~LQE~cQK~~l-----~iP~Y~~~e~~GP~h~~Ft~tV~I~--G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~~ 170 (418)
+...+|++|....|+--- +.-.|.+. .|+.-+ .|++.+. -..-..|.|+.|-+||..||-.|++.|+..
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t--~g~k~K--~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHT--NGPKKK--KVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW 90 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEEC--CSSSSE--EEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEee--cCCcee--EEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence 456899999998876532 22234443 233334 5555552 222245999999999999999999999987
Q ss_pred cc
Q 014809 171 AS 172 (418)
Q Consensus 171 ~~ 172 (418)
.-
T Consensus 91 gl 92 (119)
T 2db2_A 91 GL 92 (119)
T ss_dssp TS
T ss_pred Cc
Confidence 64
No 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=85.68 E-value=0.52 Score=52.78 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHcCCCCCeEEEeec-----cC------CCC-c-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 014809 100 GLCKNLLQEYAQKMNYAIPLYQCRKD-----EA------SGK-V-QFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLA 166 (418)
Q Consensus 100 ~n~Ks~LQE~cQK~~l~iP~Y~~~e~-----~G------P~h-~-~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~ 166 (418)
..||..+++ |.+ ..+-|.+++. .| |.. | .|.|.+.+-+..+-.+..+-||+|||.||+.||++
T Consensus 17 ~~pk~~~~q---~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~ 92 (950)
T 3htx_A 17 PTPKAIIHQ---KFG-AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK 92 (950)
T ss_dssp CCCHHHHHH---TTG-GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH---HhC-cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence 356776654 222 2367877441 11 122 3 89999999766666799999999999999999999
Q ss_pred HHhcc
Q 014809 167 IQSSA 171 (418)
Q Consensus 167 L~~~~ 171 (418)
|..+.
T Consensus 93 ~g~~~ 97 (950)
T 3htx_A 93 LGIRP 97 (950)
T ss_dssp TTSTT
T ss_pred hCCCc
Confidence 98755
No 73
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=83.11 E-value=0.96 Score=50.71 Aligned_cols=69 Identities=26% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEee--cC-----C-----CCC-CcEEEEEEECCEEeecccCCcChHHHHHHHHHHH
Q 014809 12 NCYVFKSRLQEYAQKAGIPTPVYETIK--EG-----P-----SHE-PWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVA 78 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~lP~Yev~~--eG-----P-----~H~-~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~A 78 (418)
+-..||-.++ ||.|- -+.|++.+ ++ | ..- -.|.|.+.+-+..+-++.= +-||+|||.||+.|
T Consensus 15 ~~~~pk~~~~---q~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~-~~kkd~eq~aa~~a 89 (950)
T 3htx_A 15 HTPTPKAIIH---QKFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVF-KKKKDSEQSAAELA 89 (950)
T ss_dssp CCCCCHHHHH---HTTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCB-SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchh-hccccHHHHHHHHH
Confidence 4457888765 34443 36898865 21 1 112 3899999998776656544 99999999999999
Q ss_pred HHHHHhc
Q 014809 79 LVELAKL 85 (418)
Q Consensus 79 L~~L~~~ 85 (418)
|++|...
T Consensus 90 l~~~g~~ 96 (950)
T 3htx_A 90 LDKLGIR 96 (950)
T ss_dssp HTTTTST
T ss_pred HHHhCCC
Confidence 9988754
No 74
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.69 E-value=6.5 Score=33.79 Aligned_cols=71 Identities=23% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHcCCC-----CCeEEEeecCCCCCCcEEEEEEEC---CEEeecccCCcChHHHHHHHHHHHHHHHH
Q 014809 12 NCYVFKSRLQEYAQKAGIP-----TPVYETIKEGPSHEPWFRSTVIVD---DVRYDSLPGFFNRKAAEQSAAEVALVELA 83 (418)
Q Consensus 12 ~~~npKS~LQE~cQK~g~~-----lP~Yev~~eGP~H~~~Ftv~V~V~---G~~~gsG~G~~SKKeAEq~AAk~AL~~L~ 83 (418)
....||++|....|..--. ...|-.. +|. +.=.|++++. -.. .+|.| +.|-+||..||..|+..|.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t-~g~---k~K~~tl~l~WP~~me-f~a~G-~rK~eAE~kAAA~AC~kLK 88 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHT-NGP---KKKKVTLHIKWPKSVE-VEGYG-SKKIDAERQAAAAACQLFK 88 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEEC-CSS---SSEEEEEEECSSSCEE-EEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEee-cCC---ceeEEEEEecCCCcEE-EEeec-cchHHHHHHHHHHHHHHHH
Confidence 3568999999988776311 1122221 232 2335666553 333 47899 9999999999999999999
Q ss_pred hcCCC
Q 014809 84 KLGKV 88 (418)
Q Consensus 84 ~~~~~ 88 (418)
..+..
T Consensus 89 ~Lgll 93 (119)
T 2db2_A 89 GWGLL 93 (119)
T ss_dssp HHTSS
T ss_pred HcCcc
Confidence 88754
No 75
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=37.78 E-value=73 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred eEEEeecCCCCCCcEEEEEEE-CCEEeecccCCcChHHHHHHHHHHHHHHHHhc
Q 014809 33 VYETIKEGPSHEPWFRSTVIV-DDVRYDSLPGFFNRKAAEQSAAEVALVELAKL 85 (418)
Q Consensus 33 ~Yev~~eGP~H~~~Ftv~V~V-~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~ 85 (418)
.|++..+ .+-.|...+.- ||+.+.++.||.||..|++ +++.+...
T Consensus 2 ~Fei~~~---~~G~frfrLka~NGevI~sSe~Y~sk~~a~~-----gI~sVk~n 47 (64)
T 3bid_A 2 YFEIYKD---AKGEYRWRLKAANHEIIAQGEGYTSKQNCQH-----AVDLLKST 47 (64)
T ss_dssp EEEEEEC---TTSCEEEEEECTTSCEEEECCCBSCHHHHHH-----HHHHHHTC
T ss_pred EEEEEEC---CCCCEEEEEEeCCCCEEEECCCcCCHHHHHH-----HHHHHHHh
Confidence 4566552 23369989887 8999989999888876654 45555543
No 76
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=22.43 E-value=4.3e+02 Score=23.83 Aligned_cols=117 Identities=17% Similarity=0.072 Sum_probs=64.8
Q ss_pred CCcEEEEEEECCEEeecccCCcChHHHHHHHHHHHHHHHHhcCCC-CccCCCCC-----CCCCChhHHHHHHHHHcCCCC
Q 014809 44 EPWFRSTVIVDDVRYDSLPGFFNRKAAEQSAAEVALVELAKLGKV-NECISQPI-----HETGLCKNLLQEYAQKMNYAI 117 (418)
Q Consensus 44 ~~~Ftv~V~V~G~~~gsG~G~~SKKeAEq~AAk~AL~~L~~~~~~-~s~~s~P~-----~e~~n~Ks~LQE~cQK~~l~i 117 (418)
.|.-++.++-.|+.+++|. +|..+|+. |++...+.|...+-. ......-+ .-...+.=.|.+++.... -
T Consensus 56 ~Pk~t~lIF~SGKiv~TGA--kS~e~a~~-a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~--~ 130 (188)
T 2z8u_A 56 VPKVALLIFRSGKVNCTGA--KSKEEAEI-AIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVE--G 130 (188)
T ss_dssp TTTEEEEECTTSEEEEEEE--SSHHHHHH-HHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHST--T
T ss_pred CCcEEEEEeCCCeEEEecC--CCHHHHHH-HHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCc--C
Confidence 4556777788899887764 47888777 777777777766521 00000000 001112223777776521 1
Q ss_pred CeEEEeeccCCC------CceEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHHHh
Q 014809 118 PLYQCRKDEASG------KVQFSCTVEIGDIRYIGGAAKTKKEAEIKAARTALLAIQS 169 (418)
Q Consensus 118 P~Y~~~e~~GP~------h~~Ft~tV~I~G~~~g~G~G~SKKeAKQ~AAk~AL~~L~~ 169 (418)
-.|+= +.-|+ .|.-++.+.-.|+.+.+| ++|..++++ |.+..+..|+.
T Consensus 131 ~eYeP--e~fPgliyR~~~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~~L~~ 184 (188)
T 2z8u_A 131 TEYEP--EQFPGLVYRLDDPKVVVLIFGSGKVVITG-LKSEEDAKR-ALKKILDTIKE 184 (188)
T ss_dssp EEECT--TTSSSEEEEEETTEEEEEECTTSEEEEES-CSCHHHHHH-HHHHHHHHHHH
T ss_pred cEECC--ccCceEEEEeCCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 22321 11122 144445555588887767 788888887 56666666654
No 77
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=22.14 E-value=17 Score=39.89 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=32.1
Q ss_pred CCCCh-HHHHHHHHHHcCCCCCeEEEeecCCCCCCcEEEEEEECCEEeecccCCcChHHHH---------HHHHHHHHHH
Q 014809 12 NCYVF-KSRLQEYAQKAGIPTPVYETIKEGPSHEPWFRSTVIVDDVRYDSLPGFFNRKAAE---------QSAAEVALVE 81 (418)
Q Consensus 12 ~~~np-KS~LQE~cQK~g~~lP~Yev~~eGP~H~~~Ftv~V~V~G~~~gsG~G~~SKKeAE---------q~AAk~AL~~ 81 (418)
..+|| |+.||||||++++ +.+.+ .+.+.|+ -.||+.||+.
T Consensus 445 ~~~Dp~Kt~LqE~~q~~~i-----------------------------a~~v~-~~~~~ak~~~~~~~~~~~aa~~aL~~ 494 (756)
T 2qvw_A 445 ACPDAVTKASKRVCMGEAG-----------------------------AHEFR-SLVDYACEQGISVFCSSRVSTMFLER 494 (756)
T ss_dssp CCCHHHHHHHHHHHTSCCC-----------------------------HHHHH-HHHHHTTTTTCCCBSSSHHHHHHHHH
T ss_pred cccCchHHHHHHHHhccch-----------------------------hhhhh-hhhhHHhhhccccchhhHHHHHHHHh
Confidence 45788 9999999986653 33444 4555555 4699999998
Q ss_pred HHhcC
Q 014809 82 LAKLG 86 (418)
Q Consensus 82 L~~~~ 86 (418)
|....
T Consensus 495 l~~~~ 499 (756)
T 2qvw_A 495 LRDIP 499 (756)
T ss_dssp HHHSC
T ss_pred hcccc
Confidence 87743
Done!