Query 014813
Match_columns 418
No_of_seqs 188 out of 490
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03124 EXS: EXS family; Int 100.0 2E-84 4.2E-89 654.6 28.7 331 52-389 2-345 (345)
2 KOG1162 Predicted small molecu 100.0 1.6E-81 3.5E-86 658.5 26.2 373 20-409 225-615 (617)
3 COG5409 EXS domain-containing 100.0 5.7E-61 1.2E-65 466.9 20.7 318 53-390 38-368 (384)
4 PF11368 DUF3169: Protein of u 30.1 4.1E+02 0.0089 25.6 9.6 21 19-39 13-33 (248)
5 cd07347 harmonin_N_like N-term 28.6 48 0.001 26.7 2.3 29 236-264 24-52 (78)
6 PF11952 DUF3469: Protein of u 26.3 42 0.00092 27.5 1.7 22 180-201 33-54 (87)
7 PF11753 DUF3310: Protein of u 22.1 50 0.0011 25.0 1.3 11 249-259 29-39 (60)
8 KOG4116 Ubiquinol cytochrome c 21.1 56 0.0012 26.9 1.4 33 352-384 25-58 (90)
9 KOG4561 Uncharacterized conser 19.4 2.7E+02 0.0058 27.9 6.0 61 17-77 197-258 (281)
10 PF11120 DUF2636: Protein of u 18.2 2E+02 0.0043 22.3 3.7 34 135-168 8-41 (62)
No 1
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-84 Score=654.58 Aligned_cols=331 Identities=41% Similarity=0.750 Sum_probs=290.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---
Q 014813 52 FLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-DHLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEVSL--- 127 (418)
Q Consensus 52 ~l~y~~~~L~~l~~~l~g~nl~iw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~lt~i~~~sl~~~l~~~~~g~~~~--- 127 (418)
+++||+.+++++++|+||+|+++|+++||||++|||+|+ ++++++|+++.++.+++++++++..++.....+....
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 468999999999999999999999999999999999995 7889999999999999888888777765544332211
Q ss_pred --chhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHhHhhc-CcceeecchhhhhHhhhhHHHHHhhhhhheeeeeccc
Q 014813 128 --AASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVL-PLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQ 204 (418)
Q Consensus 128 --~~~~Pl~l~~~~~~~ll~P~~i~~~~sR~~~lr~l~ril~-pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~ 204 (418)
.+..|+++++++++++++|.+++++++|+|++++++|++. |+++|+|+|||+||||||++|+++|+++++|+|.++.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 2357999999999999999999999999999999999985 8999999999999999999999999999999998743
Q ss_pred ccccccccCCCccCCccch-hhhHhhhhHHHHHHHHHHHhhhcCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCccc
Q 014813 205 VATIAWFEADSVCGSHSVA-IPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWTNF 282 (418)
Q Consensus 205 ~~~~~w~~~~~~c~~~~~~-~p~~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~sai~vi~~s~l~~~~~~~~~~~~ 282 (418)
. .++++.|++++.. .|+++++|++||++||+|||+||+++ +||.||+||++|+++++++++.....++.+...
T Consensus 162 ~-----~~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~ 236 (345)
T PF03124_consen 162 F-----TSPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIW 236 (345)
T ss_pred c-----cCCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 2 2567789887665 49999999999999999999999999 999999999999999999987655443333334
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhHHHhhhhHHHHHhhhhcccc----cc
Q 014813 283 YRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKLSAH----LR 358 (418)
Q Consensus 283 ~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~k~~YY~aiv~n~iLRf~W~~~l~~~----~~ 358 (418)
.+.+|++++++||+||++||++|||||++.+ .+.+++.||++++|++|++||.||+.|+++|++|++++++. ..
T Consensus 237 ~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~--~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~ 314 (345)
T PF03124_consen 237 LFILWIIFALINSLYSFYWDVKMDWGLFQPK--KKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHID 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCc--cccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 6799999999999999999999999998754 22467889999999999999999999999999999998763 33
Q ss_pred hhhHHHHHHHHHHHHhhhceeeeeeeccchh
Q 014813 359 HNYLTVFAITVLEMLRRFQWAFFRVENEWNK 389 (418)
Q Consensus 359 ~~~~~~f~l~~lEI~RR~iWnffRvEnEh~k 389 (418)
+++...++++++||+||++||||||||||+|
T Consensus 315 ~~~~~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 315 NSEIFIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 5678889999999999999999999999986
No 2
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-81 Score=658.52 Aligned_cols=373 Identities=34% Similarity=0.612 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc------cchhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEeeCC-C
Q 014813 20 LFFIWGFICCKVGWDSVMRMSADL------RDLFLYE-AFLYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQ-D 91 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~l~y~~~~L~~l~~~l~g~nl~iw~~~~INy~~IFe~~~-~ 91 (418)
+|++|.++||.+|+..++....+. ++.+.++ .+++|| +++++++.+++|+|+++|+++||||++|||+++ +
T Consensus 225 ~~~~~f~~g~~~~l~val~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~ 303 (617)
T KOG1162|consen 225 TFSTGFFVGCGIGLSVALVALIYLRNILQSEQRFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRT 303 (617)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCceeeecCCccc
Confidence 566667777776666665432211 1333444 467888 888889999999999999999999999999996 7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHhHhh-cCcc
Q 014813 92 HLTHREVWKCATWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQ 170 (418)
Q Consensus 92 ~l~~~~~~~~a~~lt~i~~~sl~~~l~~~~~g~~~~~~~~Pl~l~~~~~~~ll~P~~i~~~~sR~~~lr~l~ril-~pf~ 170 (418)
++.+++++.+++...+++.++++.+++....+ ..++..|+.+++++++++++|++++|+++|+|+++++.|++ +|++
T Consensus 304 ~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~--~~~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~ 381 (617)
T KOG1162|consen 304 ELGYRDILLIHNTNGILEFLPVLKNLDMSMSG--QTTELSPLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLY 381 (617)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccccCC--CCcccchHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccce
Confidence 89999999999988888888887776643322 22567899999999999999999999999999999999998 6999
Q ss_pred eeecchhhhhHhhhhHHHHHhhhhhheeeeecccccccccccCC-CccC-CccchhhhHhhhhHHHHHHHHHHHhhhcCC
Q 014813 171 AISFSDFFLADILTSMAKVFSDLERSVCRMVHRQVATIAWFEAD-SVCG-SHSVAIPLVLVLPYLFRLFQCLRQYKDTRE 248 (418)
Q Consensus 171 ~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~~~~~~w~~~~-~~c~-~~~~~~p~~~~lP~~iR~~QClRry~dt~~ 248 (418)
+|.|.|||+|||+||++++++|+++++|+|..+ +|..++ ..|. +++...++++++|+++|++||+|||+|+++
T Consensus 382 ~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~-----~~~~~~~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~~~ 456 (617)
T KOG1162|consen 382 KVLFVDFFLADQLTSLVLALRDLEFFICYYGTG-----DFQARRTCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDEKA 456 (617)
T ss_pred eeccccccHHHHHHHHHHHHHhHHHhheeeccc-----ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999754 454444 1233 345567899999999999999999999988
Q ss_pred cchhhhHHHHHhhHHHHHHHHHhhhccCCCCccchhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccc
Q 014813 249 KTALFNALKYSTAVPVIFLSALKYHVLPGSWTNFYRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLF 328 (418)
Q Consensus 249 ~~hL~Na~KY~sai~vi~~s~l~~~~~~~~~~~~~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~ 328 (418)
.+||+||+||+++++++.+++.. +..+++ ..++.+|++++.+||+|+++||++|||||++..+ + ++||++++
T Consensus 457 ~~hL~NAlKY~~~i~~v~~~~~y-~~~~~~--~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~~----~-~~lRd~l~ 528 (617)
T KOG1162|consen 457 FPHLLNALKYSTTILAVMLTTLY-RILPGS--SLWFALWILSSKVASLYTTYWDVVMDWGLLNRKS----K-PWLRDNLL 528 (617)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH-HHcCCc--chHHHHHHHHHHHHHHHHHHHHHheecccccccC----c-hhhHHHhc
Confidence 89999999999999999888764 443332 3568899999999999999999999999976432 3 88999999
Q ss_pred cCCcchhhHHHhhhhHHHHHhhhhcccccc--h-hhHHHHHHHHHHHHhhhceeeeeeeccch----hccccccccCCCC
Q 014813 329 HGRRWVYVWVIGSNLILRCTWTYKLSAHLR--H-NYLTVFAITVLEMLRRFQWAFFRVENEWN----KMNSKSNIQLSEK 401 (418)
Q Consensus 329 y~~k~~YY~aiv~n~iLRf~W~~~l~~~~~--~-~~~~~f~l~~lEI~RR~iWnffRvEnEh~----k~~~~~~~~l~~~ 401 (418)
||+|++||+||+.|+++|++|+++.+.+.. + ....+++++.+||+|||+||||||||||. +.|+.+++|+|++
T Consensus 529 ~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~~~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~l~~~ 608 (617)
T KOG1162|consen 529 YPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFLSDSMVFIMALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVPLPFS 608 (617)
T ss_pred ccchheehhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCchhh
Confidence 999999999999999999999888655422 2 46788999999999999999999999996 6899999999954
Q ss_pred CCCchhhh
Q 014813 402 DNTNEEAQ 409 (418)
Q Consensus 402 ~~~~e~~~ 409 (418)
. ++|.|+
T Consensus 609 ~-~~~~d~ 615 (617)
T KOG1162|consen 609 Y-MDESDK 615 (617)
T ss_pred h-cccccC
Confidence 4 444443
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-61 Score=466.87 Aligned_cols=318 Identities=31% Similarity=0.545 Sum_probs=250.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEeeCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCC---c
Q 014813 53 LYYNPLLLVTMMVWLWGVNLWVFAQSNVNYVKIFDLDQDHLTHRE----VWKCATWMTIIVPTSMTAYLYLYSHGE---V 125 (418)
Q Consensus 53 l~y~~~~L~~l~~~l~g~nl~iw~~~~INy~~IFe~~~~~l~~~~----~~~~a~~lt~i~~~sl~~~l~~~~~g~---~ 125 (418)
.++++..++.+...++.+|+++|+|.+|||++||+++..+.+-++ .-. +..-...+.+++..++-. .+|+ .
T Consensus 38 ~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~dfh~-~~i~~~~~~~slfiFl~~-v~g~~~~l 115 (384)
T COG5409 38 ALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDFHR-IIIPFHFFTTSLFIFLNA-VEGLKFIL 115 (384)
T ss_pred HHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhhHH-HhhhHHHHHHHHHHHHHH-hhccccce
Confidence 467888899999999999999999999999999999864432111 110 111111122222222111 1222 2
Q ss_pred ccchhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHhHhh-cCcceeecchhhhhHhhhhHHHHHhhhhhheeeeeccc
Q 014813 126 SLAASQPVLLYIAVAMILIFPFDIFYLSSRYYLLRTLWRIV-LPLQAISFSDFFLADILTSMAKVFSDLERSVCRMVHRQ 204 (418)
Q Consensus 126 ~~~~~~Pl~l~~~~~~~ll~P~~i~~~~sR~~~lr~l~ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~ 204 (418)
......|++..+....+++.|+++.++.+|+|++.++.|++ +|..+|+|+||++||++||++++++|+..++|.|..
T Consensus 116 ~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~-- 193 (384)
T COG5409 116 LFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSL-- 193 (384)
T ss_pred ehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhh--
Confidence 23446799999999999999999999999999999999986 699999999999999999999999999999999864
Q ss_pred ccccccccCCCccCC-ccchhhhHhhhhHHHHHHHHHHHhhhcCCc-chhhhHHHHHhhHHHHHHHHHhhhccCCCCccc
Q 014813 205 VATIAWFEADSVCGS-HSVAIPLVLVLPYLFRLFQCLRQYKDTREK-TALFNALKYSTAVPVIFLSALKYHVLPGSWTNF 282 (418)
Q Consensus 205 ~~~~~w~~~~~~c~~-~~~~~p~~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~sai~vi~~s~l~~~~~~~~~~~~ 282 (418)
.|.++ -|++ |+...|+++++|.++|++||+|||+|+++. +||+||+||++++|+..+.++ +|..+++ ..
T Consensus 194 ----~~~~p--Lc~sshs~~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~-~r~~~~~--~~ 264 (384)
T COG5409 194 ----LFREP--LCKSSHSDLSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWL-YRVYEGE--ER 264 (384)
T ss_pred ----hcccc--ccccCCcchHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH-HHhccCc--ce
Confidence 23333 4654 788899999999999999999999999876 999999999999999988765 5554432 34
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhccCCCCccccccccCCCCcccccccCCcchhhHHHhhhhHHHHHhhhhc-cc-ccchh
Q 014813 283 YRPLWLLSSVLNSLYSFYWDITRDWDLSCFTRIFKFNRPHLCSYLFHGRRWVYVWVIGSNLILRCTWTYKL-SA-HLRHN 360 (418)
Q Consensus 283 ~~~~wi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~k~~YY~aiv~n~iLRf~W~~~l-~~-~~~~~ 360 (418)
++..|+.++.+||+||+.|||.||||+...+. ..+...|+++.++ |+.||++|+++|++|+++. ++ |.+|+
T Consensus 265 l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~---~~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~~~~~~~~~~ 337 (384)
T COG5409 265 LFHLQIWFALLNSIYTSFWDVFMDWSLDSLTS---LRSWSKRAVTLLK----YHIAMIINFLLRFSWIVYYLPPNHIQHS 337 (384)
T ss_pred eehHHHHHHHHHHHHHHhHHhheeeeeccccc---chhccccchhHHH----HHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 57899999999999999999999999975432 1223356666654 8999999999999999984 44 35555
Q ss_pred hHHH-HHHHHHHHHhhhceeeeeeeccchhc
Q 014813 361 YLTV-FAITVLEMLRRFQWAFFRVENEWNKM 390 (418)
Q Consensus 361 ~~~~-f~l~~lEI~RR~iWnffRvEnEh~k~ 390 (418)
+... |.++.+||+||++|++||||+||.+.
T Consensus 338 ~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n 368 (384)
T COG5409 338 ADIFIFIMQLLEILRRFVWVFFRVEAEHSIN 368 (384)
T ss_pred hhhHHHHHHHHHHHHhheeeEEEeehHHHhh
Confidence 4443 89999999999999999999999753
No 4
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.12 E-value=4.1e+02 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 014813 19 LLFFIWGFICCKVGWDSVMRM 39 (418)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (418)
...++|+++|+++|...+...
T Consensus 13 ~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 13 LLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445578888888888777654
No 5
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=28.56 E-value=48 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHHHHHhhhcCCcchhhhHHHHHhhHHH
Q 014813 236 LFQCLRQYKDTREKTALFNALKYSTAVPV 264 (418)
Q Consensus 236 ~~QClRry~dt~~~~hL~Na~KY~sai~v 264 (418)
+.||+++|.++++...|++++|=...-|.
T Consensus 24 ~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPa 52 (78)
T cd07347 24 VTRALERYHQERNVDDLVRDLYLVLDTPA 52 (78)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCcHh
Confidence 67999999999988889888887655443
No 6
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=26.30 E-value=42 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.5
Q ss_pred hHhhhhHHHHHhhhhhheeeee
Q 014813 180 ADILTSMAKVFSDLERSVCRMV 201 (418)
Q Consensus 180 aDqLtSl~~~l~Dl~~~~C~y~ 201 (418)
-|+|.+++.++.++++..|-|.
T Consensus 33 ~d~L~~Ls~v~~N~~fLGC~Yp 54 (87)
T PF11952_consen 33 EDRLLCLSQVWANMEFLGCRYP 54 (87)
T ss_pred HHHHHHHHHHHHhHHHHhcCCC
Confidence 3999999999999999999885
No 7
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.11 E-value=50 Score=25.04 Aligned_cols=11 Identities=45% Similarity=0.422 Sum_probs=9.4
Q ss_pred cchhhhHHHHH
Q 014813 249 KTALFNALKYS 259 (418)
Q Consensus 249 ~~hL~Na~KY~ 259 (418)
..++.||+||+
T Consensus 29 ~f~~gnaiKY~ 39 (60)
T PF11753_consen 29 GFCLGNAIKYL 39 (60)
T ss_pred hHHHHHHHHHH
Confidence 36899999996
No 8
>KOG4116 consensus Ubiquinol cytochrome c reductase, subunit QCR8 [Energy production and conversion]
Probab=21.10 E-value=56 Score=26.87 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.8
Q ss_pred hcccccchhhHHHHHHHHHHHHhhhcee-eeeee
Q 014813 352 KLSAHLRHNYLTVFAITVLEMLRRFQWA-FFRVE 384 (418)
Q Consensus 352 ~l~~~~~~~~~~~f~l~~lEI~RR~iWn-ffRvE 384 (418)
++||-.|...-..|--++--++||+.|+ +|++=
T Consensus 25 aLSPfeQra~~g~F~~~~~n~fRr~~~~~~y~~i 58 (90)
T KOG4116|consen 25 ALSPFEQRAYAGFFDKAFPNMFRRFRSDQLYVVI 58 (90)
T ss_pred ecCchhhccccchhhhhhHHHHHHhhhccEEEEe
Confidence 3556555555556667889999999999 77763
No 9
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=19.38 E-value=2.7e+02 Score=27.89 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 014813 17 KVLLFFIWGFICCKVG-WDSVMRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFAQ 77 (418)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~y~~~~L~~l~~~l~g~nl~iw~~ 77 (418)
-||+.++..+.+|-+. +.....+....-+.-....++...++.++..-..+-..|++-+.|
T Consensus 197 vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~k 258 (281)
T KOG4561|consen 197 VNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPLFLLGLNALLLVLNLYWFSK 258 (281)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhHHHHHHHHHHHhhHHHHHHH
Confidence 3788888888888887 555544422111111222456677888888888999999887765
No 10
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=18.24 E-value=2e+02 Score=22.27 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHhHhhcC
Q 014813 135 LYIAVAMILIFPFDIFYLSSRYYLLRTLWRIVLP 168 (418)
Q Consensus 135 l~~~~~~~ll~P~~i~~~~sR~~~lr~l~ril~p 168 (418)
-.+++.++++.|.....++...+..+.+.+.++|
T Consensus 8 Qii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~ 41 (62)
T PF11120_consen 8 QIIILCALIFFPLGYLARRWLPRIRRTLRRRLFP 41 (62)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence 3445566677888877777777888888888764
Done!