Query 014813
Match_columns 418
No_of_seqs 188 out of 490
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 48.0 5.6 0.00019 25.9 0.8 11 237-247 9-19 (37)
2 2gww_B IPAA; protein complex, 18.8 59 0.002 19.9 1.7 14 180-193 16-29 (30)
3 1v54_K IHQ, cytochrome C oxida 10.9 1.8E+02 0.0062 20.8 2.7 17 22-38 18-34 (56)
4 2y69_K Cytochrome C oxidase po 8.0 2.5E+02 0.0087 21.5 2.7 29 9-38 30-58 (80)
5 2qlw_A RHAU; mutarotase, isome 6.6 68 0.0023 27.6 -1.2 14 236-249 18-31 (144)
6 1u6h_B Talin; protein-protein 5.6 2.2E+02 0.0076 18.0 1.1 21 235-257 7-27 (31)
7 3bu8_A Telomeric repeat-bindin 4.9 3.3E+02 0.011 25.1 2.2 17 231-247 57-73 (235)
8 2b5b_A Defensin; antibiotic; N 4.6 22 0.00074 22.6 -4.1 11 253-263 22-32 (36)
9 3bqo_A Telomeric repeat-bindin 4.2 4E+02 0.014 24.2 2.2 17 231-247 63-79 (211)
10 3arc_I Photosystem II reaction 4.2 5.4E+02 0.018 17.0 2.2 18 15-32 8-25 (38)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=48.03 E-value=5.6 Score=25.94 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=9.1
Q ss_pred HHHHHHhhhcC
Q 014813 237 FQCLRQYKDTR 247 (418)
Q Consensus 237 ~QClRry~dt~ 247 (418)
.||+|||.|..
T Consensus 9 rqC~Rr~edeP 19 (37)
T 2l2r_A 9 SQCMRRHEDEP 19 (37)
T ss_dssp HHHHHHTSSCG
T ss_pred HHHHHhccCCc
Confidence 59999998863
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=18.81 E-value=59 Score=19.87 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.6
Q ss_pred hHhhhhHHHHHhhh
Q 014813 180 ADILTSMAKVFSDL 193 (418)
Q Consensus 180 aDqLtSl~~~l~Dl 193 (418)
-|.-||+++++.++
T Consensus 16 kdvttslskvlkni 29 (30)
T 2gww_B 16 KDVTTSLSKVLKNI 29 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcc
Confidence 47889999998875
No 3
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=10.94 E-value=1.8e+02 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014813 22 FIWGFICCKVGWDSVMR 38 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~ 38 (418)
+++|.++|+.+|.+++-
T Consensus 18 L~~Ga~FC~a~W~y~~T 34 (56)
T 1v54_K 18 LASGATFCVAVWVYMAT 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eecchhhhHhhHhhhhe
Confidence 57899999999998875
No 4
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.97 E-value=2.5e+02 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=19.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014813 9 SPVLLWRFKVLLFFIWGFICCKVGWDSVMR 38 (418)
Q Consensus 9 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 38 (418)
+|-|-=..-++ -+++|.++|+.+|.+++-
T Consensus 30 ~pdFHdKYGn~-~L~~Ga~FC~a~W~y~~T 58 (80)
T 2y69_K 30 APDFHDKYGNA-VLASGATFCVAVWVYMAT 58 (80)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhcCce-eeecchhHHHhhHHHhhe
Confidence 45444333333 347899999999998865
No 5
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=6.58 E-value=68 Score=27.60 Aligned_cols=14 Identities=29% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCc
Q 014813 236 LFQCLRQYKDTREK 249 (418)
Q Consensus 236 ~~QClRry~dt~~~ 249 (418)
=.||+|+|+|..++
T Consensus 18 ~~~~~~~~~~~~~~ 31 (144)
T 2qlw_A 18 GQQMGRDLYDDDDK 31 (144)
T ss_dssp --------------
T ss_pred hHHHHHHHhcccch
Confidence 46999999977443
No 6
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=5.62 E-value=2.2e+02 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhcCCcchhhhHHH
Q 014813 235 RLFQCLRQYKDTREKTALFNALK 257 (418)
Q Consensus 235 R~~QClRry~dt~~~~hL~Na~K 257 (418)
|++||.|+-.|. ..+|.||.|
T Consensus 7 rLl~aak~vaea--ta~mVeaak 27 (31)
T 1u6h_B 7 KLLSAAKILADA--TAKMVEAAK 27 (31)
T ss_dssp HHHHHHHHHHHH--HHHHHHHTC
T ss_pred HHHHHHHHHHHH--HHHHHHHHH
Confidence 566666655442 245555554
No 7
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=4.86 E-value=3.3e+02 Score=25.11 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014813 231 PYLFRLFQCLRQYKDTR 247 (418)
Q Consensus 231 P~~iR~~QClRry~dt~ 247 (418)
.--+|.+|||.|-.+.+
T Consensus 57 ~k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 57 SRLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 45789999999998654
No 8
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=4.65 E-value=22 Score=22.64 Aligned_cols=11 Identities=45% Similarity=0.763 Sum_probs=7.8
Q ss_pred hhHHHHHhhHH
Q 014813 253 FNALKYSTAVP 263 (418)
Q Consensus 253 ~Na~KY~sai~ 263 (418)
+|.+||.+.+|
T Consensus 22 yncgkyiccvp 32 (36)
T 2b5b_A 22 YNCGKYICCVP 32 (36)
T ss_dssp SSBCCSSCSSS
T ss_pred ccCCceEEeEE
Confidence 68888876554
No 9
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=4.23 E-value=4e+02 Score=24.23 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014813 231 PYLFRLFQCLRQYKDTR 247 (418)
Q Consensus 231 P~~iR~~QClRry~dt~ 247 (418)
+--+|++|||.|-.+.+
T Consensus 63 ~k~i~icQfL~RI~eG~ 79 (211)
T 3bqo_A 63 LRTIYICQFLTRIAAGK 79 (211)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHcCC
Confidence 45689999999997654
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=4.22 E-value=5.4e+02 Score=16.96 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014813 15 RFKVLLFFIWGFICCKVG 32 (418)
Q Consensus 15 ~f~~~~~~~~~~~~~~~~ 32 (418)
.-.+++|+++++++++.+
T Consensus 8 Vy~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 8 VYIVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred ehhHHHHHHHHHHccccC
Confidence 345677777777777654
Done!