Query 014813
Match_columns 418
No_of_seqs 188 out of 490
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 18:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54k_ f.23.5.1 (K:) Mitochon 8.0 1.3E+02 0.0097 19.3 2.7 18 22-39 13-30 (49)
2 d3pvia_ c.52.1.6 (A:) Restrict 7.7 84 0.0061 24.6 1.9 32 233-264 8-44 (156)
3 d2axti1 f.23.37.1 (I:1-35) Pho 5.7 2.1E+02 0.015 17.0 2.5 17 16-32 9-25 (35)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 5.6 2.6E+02 0.019 15.3 2.9 16 64-79 11-26 (27)
5 d1tula_ b.85.5.1 (A:) Tlp20, b 4.5 70 0.0051 24.0 -0.3 34 381-416 21-55 (102)
6 d1rkla_ f.23.30.1 (A:) Oligosa 4.2 1.4E+02 0.01 17.7 0.9 14 181-194 5-18 (36)
7 d1jb0j_ f.23.18.1 (J:) Subunit 4.1 2.2E+02 0.016 17.5 1.9 14 253-266 2-15 (41)
8 d1q90n_ f.23.27.1 (N:) PetN su 3.8 4E+02 0.029 15.0 2.9 16 64-79 15-30 (31)
9 d3bqoa1 a.146.1.1 (A:62-265) T 3.6 2.3E+02 0.017 23.5 2.2 17 231-247 59-75 (204)
10 d1ut3a_ g.9.1.1 (A:) Beta-defe 3.5 9.2 0.00067 23.1 -5.0 8 235-242 29-36 (38)
No 1
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.00 E-value=1.3e+02 Score=19.28 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014813 22 FIWGFICCKVGWDSVMRM 39 (418)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (418)
+++|.++|...|.+++-.
T Consensus 13 L~~Ga~fc~avW~yv~TQ 30 (49)
T d1v54k_ 13 LASGATFCVAVWVYMATQ 30 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred Eecccchhhhhhhheeee
Confidence 578999999999988753
No 2
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=7.71 E-value=84 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhcCCc---c--hhhhHHHHHhhHHH
Q 014813 233 LFRLFQCLRQYKDTREK---T--ALFNALKYSTAVPV 264 (418)
Q Consensus 233 ~iR~~QClRry~dt~~~---~--hL~Na~KY~sai~v 264 (418)
+.|++-|+|+|.+-.++ + ---|.|||.--+++
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlmi 44 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLI 44 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHHH
Confidence 57888899999864322 2 23699999866655
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.70 E-value=2.1e+02 Score=16.95 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014813 16 FKVLLFFIWGFICCKVG 32 (418)
Q Consensus 16 f~~~~~~~~~~~~~~~~ 32 (418)
..+++|+++++++++.+
T Consensus 9 y~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 9 YIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 45677777777776654
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.57 E-value=2.6e+02 Score=15.25 Aligned_cols=16 Identities=19% Similarity=0.733 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhCC
Q 014813 64 MVWLWGVNLWVFAQSN 79 (418)
Q Consensus 64 ~~~l~g~nl~iw~~~~ 79 (418)
..+-|++-+-+|.|.|
T Consensus 11 vvftwsiamvvwgrng 26 (27)
T d2e74h1 11 VVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHhhheeeeEEEccCC
Confidence 4467788888998876
No 5
>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein {AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]}
Probab=4.50 E-value=70 Score=23.98 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=16.2
Q ss_pred eeeeccch-hccccccccCCCCCCCchhhhcccCCCC
Q 014813 381 FRVENEWN-KMNSKSNIQLSEKDNTNEEAQSLISNDH 416 (418)
Q Consensus 381 fRvEnEh~-k~~~~~~~~l~~~~~~~e~~~~~~~~~~ 416 (418)
|-+|+||- |-.++.+-.+ +=+|+++=..||.+.|
T Consensus 21 F~v~dEyhLkKl~vGAy~v--~Il~s~~L~~L~~~~~ 55 (102)
T d1tula_ 21 FIIEDEYYLKKRGVGAHII--KVASSPQLRLLYKNAY 55 (102)
T ss_dssp EEECSCEEECCCSCEEEEE--EECCCGGGGGGGTSEE
T ss_pred EEEchheeehhhccccEEE--EEcChHHHHHHhcCCc
Confidence 67889984 4333333222 2233334444454443
No 6
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.25 E-value=1.4e+02 Score=17.65 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=10.7
Q ss_pred HhhhhHHHHHhhhh
Q 014813 181 DILTSMAKVFSDLE 194 (418)
Q Consensus 181 DqLtSl~~~l~Dl~ 194 (418)
|||+|++..|+=..
T Consensus 5 ~qln~~~i~fgi~m 18 (36)
T d1rkla_ 5 EQLNSLAITFGIVM 18 (36)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred hhcCcEEeehhHHH
Confidence 78999888777543
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.08 E-value=2.2e+02 Score=17.48 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.5
Q ss_pred hhHHHHHhhHHHHH
Q 014813 253 FNALKYSTAVPVIF 266 (418)
Q Consensus 253 ~Na~KY~sai~vi~ 266 (418)
-|..||.|+-||+.
T Consensus 2 ~~~~~ylstAPVla 15 (41)
T d1jb0j_ 2 KHFLTYLSTAPVLA 15 (41)
T ss_dssp HHHHHHTTBHHHHH
T ss_pred chHHHHHhhhHHHH
Confidence 47789999999864
No 8
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.76 E-value=4e+02 Score=14.99 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhCC
Q 014813 64 MVWLWGVNLWVFAQSN 79 (418)
Q Consensus 64 ~~~l~g~nl~iw~~~~ 79 (418)
..+.|.+.+-+|.|.|
T Consensus 15 atfsfslslvvwgrsg 30 (31)
T d1q90n_ 15 VMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HhheeeEEEEEEeccC
Confidence 4567888888888876
No 9
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.56 E-value=2.3e+02 Score=23.50 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014813 231 PYLFRLFQCLRQYKDTR 247 (418)
Q Consensus 231 P~~iR~~QClRry~dt~ 247 (418)
+-.+|++|||.|-.+.+
T Consensus 59 ~k~i~i~QfLsRI~eG~ 75 (204)
T d3bqoa1 59 LRTIYICQFLTRIAAGK 75 (204)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 34689999999987654
No 10
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=3.52 E-value=9.2 Score=23.11 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 014813 235 RLFQCLRQ 242 (418)
Q Consensus 235 R~~QClRr 242 (418)
||.||-||
T Consensus 29 rfvqccrr 36 (38)
T d1ut3a_ 29 RFVQCCRR 36 (38)
T ss_dssp SSSEEEEE
T ss_pred HHHHHHHh
Confidence 55666543
Done!