BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014815
(418 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 312/430 (72%), Positives = 355/430 (82%), Gaps = 26/430 (6%)
Query: 1 MPREMESASAAAEPVELEK------PVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEE 54
MPR +ASA +PVE EK P+ SDE+VD DEDNDP+E M+EE EYEEVE EEE
Sbjct: 1 MPRAKGNASATCKPVEPEKLSEPEKPIESDERVDLDEDNDPDEAMDEEVEYEEVEVEEEV 60
Query: 55 EVIEEEVEEEV------------------EEEEEDADAGKSGDMQIEDEDEKKKHAELLA 96
E +EEEVEEE E +E+ + +G G +IEDEDE KKHAELLA
Sbjct: 61 EEVEEEVEEEEVEEEEEEVEEEEEEEEANEADEQKSPSGGGG--KIEDEDESKKHAELLA 118
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
LPPHGSEVY+GGI DASE DL+ FC+S+GEVTEVRIMKGKDS ENKGFAFVTFRNVELA
Sbjct: 119 LPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELA 178
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
SKAI++LNNTEFKG+KI+CSTSQAK+RLFIGN+PR+WG ED++KVV+E+GPGVT VELVK
Sbjct: 179 SKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVK 238
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
DMKNSSNNRGFAFI+Y+NH CAEYSRQKM NP FKL NAPTVSWADP+N DSS ASQVK
Sbjct: 239 DMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNADSSPASQVK 298
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
AVYVKNLP+N+TQDQLK+LFEHHG+ITKVV+PPAK GQEK+RIGFVHFAERSSAMKALKN
Sbjct: 299 AVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKN 358
Query: 337 TEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGFG 396
TEKYE+DGQ LECSLAKPQADQKS GGS S+K LL +YPP +GYG GG YGALGAG+G
Sbjct: 359 TEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAYGALGAGYG 418
Query: 397 AAAFAQTTVW 406
A FAQ ++
Sbjct: 419 TAGFAQPLIY 428
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/325 (79%), Positives = 293/325 (90%), Gaps = 1/325 (0%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I DEDE KKHAELLALPPHGSEVY+GGIP D+SE DLR FC+SIGEVTEVR+M+ K+S+E
Sbjct: 375 INDEDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNE 434
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKV 201
NKGFAFVTFR+VELASKAID+LNNTEFKGKKI+CS+SQAK+RLFIGN+PR+WG EDL+KV
Sbjct: 435 NKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKV 494
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
V+E+GPGVT VELVKDMKN+SNNRGFAFI+Y+NH CAEYSRQKM NP FKL NAPTVSW
Sbjct: 495 VTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 554
Query: 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
ADP+N DSS ASQVKAVYVKNLP+NVTQ+QLKKLF+HHG+ITKVV+PPAK GQEKNRIGF
Sbjct: 555 ADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGF 614
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
VHF+ERSSAMKALKNTEKYELDGQ LECSLAKPQADQKS GGS S+K LL NYPP +GY
Sbjct: 615 VHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKS-GGSNSQKSGLLPNYPPRVGY 673
Query: 382 GLAGGTYGALGAGFGAAAFAQTTVW 406
G GG YGA+ AG+G + F Q ++
Sbjct: 674 GFVGGAYGAVNAGYGGSGFGQPLIY 698
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/325 (79%), Positives = 293/325 (90%), Gaps = 1/325 (0%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I DEDE KKHAELLALPPHGSEVY+GGIP D+SE DLR FC+SIGEVTEVR+M+ K+S+E
Sbjct: 419 INDEDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNE 478
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKV 201
NKGFAFVTFR+VELASKAID+LNNTEFKGKKI+CS+SQAK+RLFIGN+PR+WG EDL+KV
Sbjct: 479 NKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKV 538
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
V+E+GPGVT VELVKDMKN+SNNRGFAFI+Y+NH CAEYSRQKM NP FKL NAPTVSW
Sbjct: 539 VTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 598
Query: 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
ADP+N DSS ASQVKAVYVKNLP+NVTQ+QLKKLF+HHG+ITKVV+PPAK GQEKNRIGF
Sbjct: 599 ADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGF 658
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
VHF+ERSSAMKALKNTEKYELDGQ LECSLAKPQADQKS GGS S+K LL NYPP +GY
Sbjct: 659 VHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKS-GGSNSQKSGLLPNYPPRVGY 717
Query: 382 GLAGGTYGALGAGFGAAAFAQTTVW 406
G GG YGA+ AG+G + F Q ++
Sbjct: 718 GFVGGAYGAVNAGYGGSGFGQPLIY 742
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/411 (71%), Positives = 341/411 (82%), Gaps = 12/411 (2%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE 60
MP + SAAAE E EKPV DEKVD DED DPEE M+EE EYEEVEE EEEV EEE
Sbjct: 1 MPSTKGNGSAAAEQAESEKPVEYDEKVDLDEDYDPEEMMDEEVEYEEVEEIVEEEVEEEE 60
Query: 61 VEEEVEEEE---------EDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPH 111
+ EE EE E +A+AG + ++EDEDE+KK+ ELLA PPHGSEVYIGGIP+
Sbjct: 61 IIEEEEEVEVEEEDDDDASNANAGD--ETKVEDEDEQKKYDELLARPPHGSEVYIGGIPN 118
Query: 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171
DASE DLRDFC+S+GEVTEVRIM+ KDSSEN+GFAFVTFR+V+LAS AI +LNNTEFKGK
Sbjct: 119 DASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGK 178
Query: 172 KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE 231
KI+CSTSQAK+RLF+ NIPR+WG + L+K+V+EVGPGVT V+LVK+ K+SSNNRG+AFIE
Sbjct: 179 KIKCSTSQAKHRLFLSNIPRSWGEDGLRKIVAEVGPGVTNVQLVKE-KSSSNNRGYAFIE 237
Query: 232 YHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQ 291
Y+N+ CAEYSRQKM +P FKLG NAP VSWADP+N DSS +SQVKA+YVKNLP+ VTQDQ
Sbjct: 238 YYNNACAEYSRQKMMDPKFKLGDNAPAVSWADPKNADSSASSQVKALYVKNLPKTVTQDQ 297
Query: 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351
LKKLFE HG+ITKVV+PPAK GQEKNRIGFVHFAERSSAMKALK+TEKYELDGQ +EC+L
Sbjct: 298 LKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECAL 357
Query: 352 AKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQ 402
AKPQ++QK+AGGS + LL YPP +GYG+ G YGALGAG+ A FAQ
Sbjct: 358 AKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAGYVTAGFAQ 408
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/388 (74%), Positives = 329/388 (84%), Gaps = 12/388 (3%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE 60
MPRE +ASAAAEPVE E V SDEKVD DED+DPE EE E EE EEEE++E E
Sbjct: 1 MPREKGNASAAAEPVEPENSVESDEKVDLDEDDDPEVMDEEVEYEEVEEEIEEEELVEVE 60
Query: 61 VEEEVEEEEE--DADAGKSGDMQ---------IEDEDEKKKHAELLALPPHGSEVYIGGI 109
EEEVEEEEE +A+ G Q I+DE+E+K HAELLA PPHGSEVYIGGI
Sbjct: 61 EEEEVEEEEEEENANNGDGSSAQKRIIGDEIIIDDENERKNHAELLARPPHGSEVYIGGI 120
Query: 110 PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169
PHDASE DLR FC+S+GEVTEVR+MKGKDS+ENK FAFVTFR+V+LASKAID+LNNTEFK
Sbjct: 121 PHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRFAFVTFRSVDLASKAIDELNNTEFK 180
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK+I+CST+QAKYRLF+GNIPR+W EDL+KVV+EVGPGVT V+LVKDMK +SNN+GFAF
Sbjct: 181 GKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVGPGVTAVQLVKDMK-TSNNKGFAF 239
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQ 289
I+Y+N CAEYSRQKM NP+FKLG NAPTVSWA+P+N DSS +SQVKA+YVKNLP+NVTQ
Sbjct: 240 IDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPKNADSSASSQVKAIYVKNLPKNVTQ 299
Query: 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349
DQLKKLFEHHG+ITKVV+PPAKPGQEKNRIGFVHFAERSSAMKALKNTE+YELDGQ +EC
Sbjct: 300 DQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSAMKALKNTERYELDGQVVEC 359
Query: 350 SLAKPQADQKSAGGSVSEKPSLLQNYPP 377
SLAKPQADQKS G S + P LL +YPP
Sbjct: 360 SLAKPQADQKSVGVSNLQNPGLLPSYPP 387
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/318 (81%), Positives = 289/318 (90%)
Query: 89 KKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFV 148
KKHAELLALPPHGSEVY+GGI DASE DL+ FC+S+GEVTEVRIMKGKDS ENKGFAFV
Sbjct: 42 KKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFV 101
Query: 149 TFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
TFRNVELASKAI++LNNTEFKG+KI+CSTSQAK+RLFIGN+PR+WG ED++KVV+E+GPG
Sbjct: 102 TFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPG 161
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
VT VELVKDMKNSSNNRGFAFI+Y+NH CAEYSRQKM NP FKL NAPTVSWADP+N D
Sbjct: 162 VTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNAD 221
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
SS ASQVKAVYVKNLP+N+TQDQLK+LFEHHG+ITKVV+PPAK GQEK+RIGFVHFAERS
Sbjct: 222 SSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERS 281
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTY 388
SAMKALKNTEKYE+DGQ LECSLAKPQADQKS GGS S+K LL +YPP +GYG GG Y
Sbjct: 282 SAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAY 341
Query: 389 GALGAGFGAAAFAQTTVW 406
GALGAG+G A FAQ ++
Sbjct: 342 GALGAGYGTAGFAQPLIY 359
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/339 (72%), Positives = 294/339 (86%), Gaps = 1/339 (0%)
Query: 71 DADAGKSGD-MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D + GD ++EDEDEKKKHAELLA PPHGSEVYIGG+P+DASE DL+DFC+S+GEVT
Sbjct: 8 DIQSSHQGDEAKVEDEDEKKKHAELLARPPHGSEVYIGGVPNDASEEDLKDFCESVGEVT 67
Query: 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNI 189
EVR+MKGKDSS+NKGFAFVTFR+V+LA+KAI +LNNTEFKGK+I+CSTSQAK+RLF+ NI
Sbjct: 68 EVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQAKHRLFLSNI 127
Query: 190 PRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249
PR+WG EDL K V+EVGPG T V+LVK ++SSNNRG+AF+EY+N+ CAEYSRQKM +P
Sbjct: 128 PRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAEYSRQKMIDPK 187
Query: 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309
FKLG NAP+VSWADP+N DSS +SQVKA+YVKNLP+ VTQDQLKKLFE HG+ITKVV+PP
Sbjct: 188 FKLGDNAPSVSWADPKNADSSTSSQVKAIYVKNLPKTVTQDQLKKLFERHGKITKVVLPP 247
Query: 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKP 369
AK GQEKNRIGFVHFAERSSAMKALK+TEKYEL+GQ++EC+LAKPQ++QK AGGS ++
Sbjct: 248 AKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQKPAGGSNLQRA 307
Query: 370 SLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQTTVWSS 408
LL YPP +GYG+ G YGALGAG+ A F Q ++ S
Sbjct: 308 GLLPAYPPGVGYGMMGSAYGALGAGYVATGFTQPLIYGS 346
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/404 (72%), Positives = 337/404 (83%), Gaps = 27/404 (6%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE 60
MPRE +S+AA+P E E+PV SDEKVDF+E NDPEE MEEE EYEEVEEEEE E IEEE
Sbjct: 1 MPREKAISSSAAKPSEPEEPVESDEKVDFEEANDPEEAMEEEVEYEEVEEEEEVEEIEEE 60
Query: 61 VEEEVEEEE----------------------EDADAGKSGD-MQIEDEDEKKKHAELLAL 97
VEE EEEE +DA S D ++EDEDEKKKHAELL++
Sbjct: 61 VEEVEEEEEVEVEEDEEEEEEEEEEVEEVEEDDAMQNHSSDETKVEDEDEKKKHAELLSI 120
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PPHGSEVYIGGIPH AS+ DL+ C+ IGEV EVRIMKGKDSSENKGF FVTFR+VELAS
Sbjct: 121 PPHGSEVYIGGIPH-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFRSVELAS 179
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KAI++LNNTEF GKKI+CS SQAK+RLFIGN+PR+WG EDL+K+V+E+GPGVTGVELVKD
Sbjct: 180 KAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKD 239
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA 277
MKN++NNRGFAFI+Y+NH CAEYSRQKM +P FKLG NAPTVSWADP+N +SS ASQVKA
Sbjct: 240 MKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKA 299
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
VYVKNLP+NVTQ+QLKKLFE HG+ITKVV+PPAK GQEKNRIGFVHFAERS+AMKALKNT
Sbjct: 300 VYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNT 359
Query: 338 EKYELDGQALECSLAKPQADQKSAGGSVSEK--PSLLQNYPPHI 379
E+YEL+GQ L+CSLAKPQADQKS GGS ++K P LL +YPPH+
Sbjct: 360 ERYELEGQLLQCSLAKPQADQKS-GGSNTQKPGPGLLPSYPPHV 402
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 289/395 (73%), Positives = 328/395 (83%), Gaps = 31/395 (7%)
Query: 18 EKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEE-------- 69
E+PV SDEKVDF+E NDPEE MEEE EYEEVEEEEE E IEEEVEE EEEE
Sbjct: 18 EEPVESDEKVDFEEANDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEVEEEEEVEVEEEEE 77
Query: 70 ------------------EDADAGKSGD-MQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
+DA S D ++EDEDEK+KHAELL+LPPHGSEVYIGGIP
Sbjct: 78 EEEEEEEEEEVEVEEVEEDDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIP 137
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
H AS+ DL+ C+ IGEV EVRIMKGKDSSENKGF FVTF +VELASKAI++LNNTEF G
Sbjct: 138 H-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMG 196
Query: 171 KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFI 230
KKI+CS SQAK+RLFIGN+PR+WG EDL+K+V+E+GPGVTGVELVKDMKN++NNRGFAFI
Sbjct: 197 KKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFI 256
Query: 231 EYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQD 290
+Y+NH CAEYSRQKM +P FKLG NAPTVSWADP+N +SS ASQVKAVYVKNLP+NVTQ+
Sbjct: 257 DYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQE 316
Query: 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350
QLKKLFE HG+ITKVV+PPAK GQEKNRIGFVHFAERS+AMKALKNTE+YEL+GQ LECS
Sbjct: 317 QLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECS 376
Query: 351 LAKPQADQKSAGGSVSEK--PSLLQNYPPHIGYGL 383
LAKPQADQKS GGS ++K P LL +YPPH+GYGL
Sbjct: 377 LAKPQADQKS-GGSNTQKPGPGLLPSYPPHVGYGL 410
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 279/415 (67%), Positives = 331/415 (79%), Gaps = 11/415 (2%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDN---------DPEETMEEEYEYEEVEEE 51
MPR S AA + E EK V SDE VD D DN E +EEE E EE+EEE
Sbjct: 1 MPRTRGSVDAAHKQDEPEKLVESDEGVDLDGDNGQEETMEEEVEYEEVEEEEEVEEIEEE 60
Query: 52 EEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPH 111
EEE E E EEE+EE +ADA K D + E +DE++KHAELLALPPHGSEVY+GGIP
Sbjct: 61 EEEVEEEVEEEEEIEESANEADAQKGSDSE-EGQDEERKHAELLALPPHGSEVYLGGIPI 119
Query: 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171
DASE DLR FC+SIGEVTEVRIMKGK SS+ KG+AFVTFR+ ELASKAI++LNNTEFKG+
Sbjct: 120 DASEQDLRHFCESIGEVTEVRIMKGKASSDTKGYAFVTFRSKELASKAIEQLNNTEFKGR 179
Query: 172 KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE 231
KI+CSTSQA +RLF+GN+PR+W +D+ +VV ++GPGV VEL+KD +NSS NRGFAFIE
Sbjct: 180 KIKCSTSQANHRLFLGNVPRDWEEKDMMQVVMKIGPGVISVELLKDPQNSSRNRGFAFIE 239
Query: 232 YHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQ 291
Y+NH CA+YSR+KM+NP FKL NAPTVSWADP+N SS ASQVKAVYVKNLP ++TQD+
Sbjct: 240 YYNHACADYSRKKMSNPQFKLDDNAPTVSWADPKNAGSSAASQVKAVYVKNLPHDITQDR 299
Query: 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351
L++LFE HG++TKVVVPPAK G E++R FVHFAERSSAMKALKNTEKYE+DGQ LECSL
Sbjct: 300 LRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSAMKALKNTEKYEIDGQVLECSL 359
Query: 352 AKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQTTVW 406
AKPQADQKS+GGS +K L +PP +GYGL GGTYGALGAG+G A+FAQ ++
Sbjct: 360 AKPQADQKSSGGSNLQKSVLHPTFPPRLGYGLVGGTYGALGAGYG-ASFAQPMIY 413
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/325 (72%), Positives = 280/325 (86%), Gaps = 1/325 (0%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
++D+DEKKKHAELL+LP H SEVY+GGIP DA DL++FC+ IGEV +VRI KGKD+SE
Sbjct: 327 LDDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASE 386
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKV 201
N+GFAFVT+R++ELASKAI +LNNTEFK KI+CS SQAK RLFIGNIPR+WG +DL+KV
Sbjct: 387 NRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKV 446
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
VS++GPGVT VEL+KDMKN SNNRG+AFI+YHN++CAEYSRQKMT+P+FKLG N PTV+W
Sbjct: 447 VSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNW 506
Query: 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
A+P+N DSS +SQVK VYVKNLP+NVT++QLKKLFEHHG+ITKVV+PP KPGQEKNRIGF
Sbjct: 507 AEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGF 566
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
VHFAERS+AMKALKNTEKY LDGQ LECSLAK QAD K+ ++ + SL + YPPH+GY
Sbjct: 567 VHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPR-YPPHVGY 625
Query: 382 GLAGGTYGALGAGFGAAAFAQTTVW 406
GL G YG LGAG+GA AQ +
Sbjct: 626 GLDGNPYGVLGAGYGAPGLAQPFTY 650
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/325 (72%), Positives = 280/325 (86%), Gaps = 1/325 (0%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
++D+DEKKKHAELL+LP H SEVY+GGIP DA DL++FC+ IGEV +VRI KGKD+SE
Sbjct: 362 LDDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASE 421
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKV 201
N+GFAFVT+R++ELASKAI +LNNTEFK KI+CS SQAK RLFIGNIPR+WG +DL+KV
Sbjct: 422 NRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKV 481
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
VS++GPGVT VEL+KDMKN SNNRG+AFI+YHN++CAEYSRQKMT+P+FKLG N PTV+W
Sbjct: 482 VSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNW 541
Query: 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
A+P+N DSS +SQVK VYVKNLP+NVT++QLKKLFEHHG+ITKVV+PP KPGQEKNRIGF
Sbjct: 542 AEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGF 601
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
VHFAERS+AMKALKNTEKY LDGQ LECSLAK QAD K+ ++ + SL + YPPH+GY
Sbjct: 602 VHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPR-YPPHVGY 660
Query: 382 GLAGGTYGALGAGFGAAAFAQTTVW 406
GL G YG LGAG+GA AQ +
Sbjct: 661 GLDGNPYGVLGAGYGAPGLAQPFTY 685
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/395 (71%), Positives = 320/395 (81%), Gaps = 39/395 (9%)
Query: 18 EKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEE-------- 69
E+PV SDEKVDF+E NDPEE MEEE EYEEVEEEEE E IEEEVEE EEEE
Sbjct: 18 EEPVESDEKVDFEEANDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEVEEEEEVEVEEEEE 77
Query: 70 ------------------EDADAGKSGD-MQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
+DA S D ++EDEDEK+KHAELL+LPPHGSEVYIGGIP
Sbjct: 78 EEEEEEEEEEVEVEEVEEDDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIP 137
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
H AS+ DL+ C+ IGEV EVRIMKGKDSSENKGF FVTF +VELASKAI++LNNTEF G
Sbjct: 138 H-ASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMG 196
Query: 171 KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFI 230
KKI+CS SQAK+RLFIGN+PR+WG EDL+K+V+E+GPG DMKN++NNRGFAFI
Sbjct: 197 KKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPG--------DMKNTNNNRGFAFI 248
Query: 231 EYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQD 290
+Y+NH CAEYSRQKM +P FKLG NAPTVSWADP+N +SS ASQVKAVYVKNLP+NVTQ+
Sbjct: 249 DYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQE 308
Query: 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350
QLKKLFE HG+ITKVV+PPAK GQEKNRIGFVHFAERS+AMKALKNTE+YEL+GQ LECS
Sbjct: 309 QLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECS 368
Query: 351 LAKPQADQKSAGGSVSEK--PSLLQNYPPHIGYGL 383
LAKPQADQKS GGS ++K P LL +YPPH+GYGL
Sbjct: 369 LAKPQADQKS-GGSNTQKPGPGLLPSYPPHVGYGL 402
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/321 (71%), Positives = 274/321 (85%), Gaps = 3/321 (0%)
Query: 68 EEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGE 127
+E D+ G GD E+EDE +KH+ELLALPPHGSEVY+GGIP DASE DL++FC+SIGE
Sbjct: 37 DEADSPKGSDGD---EEEDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGE 93
Query: 128 VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIG 187
VTE+RIMKGKDSSE+KG+AFVTFR ELASKAI++LNNTEFKGKK++CSTSQA +RLFIG
Sbjct: 94 VTEIRIMKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIG 153
Query: 188 NIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247
N+PRNWG ED++K V + GPGV VEL+KD +N S NRGFAFIEY+NH CAEYSR+ M++
Sbjct: 154 NVPRNWGEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSS 213
Query: 248 PNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
P FKL NAPTVSWADP+N SS ASQVKAVYVKNLP ++ QD+L++LFEHHG++TKVV+
Sbjct: 214 PEFKLDDNAPTVSWADPKNAGSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVL 273
Query: 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSE 367
PPAKPG EK+R GFVHFAERSSAMKALKNTEKY++DGQ L+CSLAKPQAD KS+GG S+
Sbjct: 274 PPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSGGPNSQ 333
Query: 368 KPSLLQNYPPHIGYGLAGGTY 388
K S ++PP +GY L G +Y
Sbjct: 334 KSSPHSSFPPRVGYSLVGSSY 354
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/369 (69%), Positives = 300/369 (81%), Gaps = 12/369 (3%)
Query: 16 ELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAG 75
E EKP SDE+VDFD DND + E E E E EEEEE EEE EEE EEE + +D
Sbjct: 21 EPEKPTDSDERVDFDGDND--QEETMEEEVEYEEVEEEEEEEEEEEEEEEEEETKLSDKT 78
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
+ D + DE EKKKHAELLALPPHGSEVYIGGIP + SE DLR FCQS+GEV+EVRIMK
Sbjct: 79 RVADTK--DEVEKKKHAELLALPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMK 136
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GK+S E KG+AFVTF ELASKAI++LNN+EFKGK+I+CSTSQ K++LFIGN+P+ W
Sbjct: 137 GKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTE 196
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
D++KVV+E+GPGV VEL+KD +NSS NRG+AFIEY+NH CAEYSRQKM+N NFKLG+N
Sbjct: 197 GDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSN 256
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADPRN +SS S VK+VYVKNLP N+TQD+LK+LFEHHG+ITKVV+P AK GQE
Sbjct: 257 APTVSWADPRNSESSAISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQE 316
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY 375
K+R GFVHFAERSSAMKALKNTEKYE+DGQ LECSLAKPQA+ S+KP+LL Y
Sbjct: 317 KSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQAN--------SQKPALLPTY 368
Query: 376 PPHIGYGLA 384
PPH+GYG+
Sbjct: 369 PPHLGYGMV 377
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/317 (71%), Positives = 269/317 (84%), Gaps = 7/317 (2%)
Query: 71 DADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE 130
D+ G G+ +I DE++KHAELLALPPHGSEVY+GGIP DASE DL++FC+SIGEVTE
Sbjct: 61 DSKKGSDGEEEI---DEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTE 117
Query: 131 VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIP 190
VRIMKGKDSSE+KG+AFV+FR ELASKAI++LNNTEFKGKK++CSTSQA +RLFIGN+P
Sbjct: 118 VRIMKGKDSSESKGYAFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVP 177
Query: 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250
RNWG E+++K V ++GPGV VEL+KD +N S NRGFAFIEY+NH CAEYSR+KM+NP F
Sbjct: 178 RNWGEENMKKAVKKIGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEF 237
Query: 251 KLGTNAPTVSWADPRNVDSSGASQ----VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306
KL NAPTVSWADP+N SS ASQ VKAVYVKNLP ++TQD L++LFEHHG++TKVV
Sbjct: 238 KLDDNAPTVSWADPKNAGSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVV 297
Query: 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVS 366
+PPAKPG EK+R GFVHFAERSSAMKALKNTEKYE+DG L+CSLAKP DQK +GG S
Sbjct: 298 LPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNS 357
Query: 367 EKPSLLQNYPPHIGYGL 383
+ SL N+PP +GYGL
Sbjct: 358 QNSSLYSNFPPQLGYGL 374
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/388 (64%), Positives = 305/388 (78%), Gaps = 12/388 (3%)
Query: 6 ESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEV 65
++ + + P+E EKP +E+VD D DN+ + E E E E E EE EE EEEVEEEV
Sbjct: 13 QNPNVSENPIECEKPAEPEERVDLDGDNEDTKEEEVESEEVEEEVEEIEEEEEEEVEEEV 72
Query: 66 EEEEE-------DADAGKSGDMQI-----EDEDEKKKHAELLALPPHGSEVYIGGIPHDA 113
EE+EE DA GD +I E ++E ++HAELLALPPHGSEVY+GGIP++A
Sbjct: 73 EEDEEEEDTYFADAQKDPDGDDEIKSAKGEVDNENRRHAELLALPPHGSEVYLGGIPNNA 132
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
SE DLR FC+ +GEVTEVRI+KGKDS+E KG+AFVTFR ELASKA+++LNN E KG+KI
Sbjct: 133 SEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKI 192
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYH 233
+CS SQ K+RLFI N+PR W ED++KVV+E+GPGV V+L KD +NSS NRGFAFIEY+
Sbjct: 193 KCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYY 252
Query: 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLK 293
NH CAEYSR+KM+NP FKL NA TVSWADP+NV+SS ASQVKAVY+KNLP+ +TQDQL+
Sbjct: 253 NHACAEYSRKKMSNPKFKLDNNASTVSWADPKNVESSAASQVKAVYIKNLPKYMTQDQLR 312
Query: 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+LF HG+ITKVV+PPAK GQE R GFVHFAERSSAMKALKNTEKYE+DG L CSLAK
Sbjct: 313 ELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAK 372
Query: 354 PQADQKSAGGSVSEKPSLLQNYPPHIGY 381
PQAD+K +GGS S+K +LL +YPP +GY
Sbjct: 373 PQADKKFSGGSNSQKSALLPSYPPWVGY 400
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/297 (71%), Positives = 256/297 (86%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++E ++HAELLALPPHGSEVY+GGIP++ASE DLR FC+ +GEVTEVRI+KGKDS+E KG
Sbjct: 75 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 134
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSE 204
+AFVTFR ELASKA+++LNN E KG+KI+CS SQ K+RLFI N+PR W ED++KVV+E
Sbjct: 135 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 194
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+GPGV V+L KD +NSS NRGFAFIEY+NH CAEYSR+KM+NP FKL NA TVSWADP
Sbjct: 195 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 254
Query: 265 RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
+NV+SS ASQVKAVY+KNLP+ +TQDQL++LF HG+ITKVV+PPAK GQE R GFVHF
Sbjct: 255 KNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHF 314
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
AERSSAMKALKNTEKYE+DG L CSLAKPQAD+K +GGS S+K +LL +YPP +GY
Sbjct: 315 AERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGY 371
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/377 (66%), Positives = 296/377 (78%), Gaps = 13/377 (3%)
Query: 3 REMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVE 62
R ES +EP EKP S E+VD D DND + E E E E EE +EEEVE
Sbjct: 12 RNSESPGGNSEP---EKPTDSGEQVDLDGDND-------QEESSEEEVEYEEVEVEEEVE 61
Query: 63 EEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFC 122
EE EEEEE+ +S + EDE +KKKHAELLALPPHGSEVYIGGIPH+ SE DLR FC
Sbjct: 62 EEEEEEEEEEVEEESKPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFC 121
Query: 123 QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
QS+GEV EVR+MKGK E KG+AFVTF+ ELASKA+ +LNN+EFKG+KI+CS SQ K+
Sbjct: 122 QSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKH 178
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RLFIG++P+ W ED++KVV++VGPGV VEL+KD ++SS NRGFAFIEYHNH CAEYSR
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
QKM+N NFKL N VSWADPRN +SS +SQVKAVYVKNLP N+TQ++LK+LFEHHG+I
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKI 298
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG 362
TKV +PPAK GQEK+R GFVHFA+RSSAMKALKNTEKYE++GQ LECSLAKPQADQKS+G
Sbjct: 299 TKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSG 358
Query: 363 GSVSEKPSLLQNYPPHI 379
S S ++L YPP +
Sbjct: 359 ASNSFNSAVLPAYPPPL 375
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/406 (63%), Positives = 320/406 (78%), Gaps = 16/406 (3%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE 60
M R +AS A + +E S+E+VD D DNDPEE +EEE EYEEVEEEEE E IEEE
Sbjct: 1 MSRTRTAASEAHDSME------SEERVDLDGDNDPEEILEEEVEYEEVEEEEEIEEIEEE 54
Query: 61 VEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD 120
+EEEVE EEE+ DA + E+E+EKK+H ELLALP HGSEVY+GGIP DA+E DL+
Sbjct: 55 IEEEVEVEEEEEDAVAT-----EEEEEKKRHVELLALPSHGSEVYLGGIPTDATEGDLKG 109
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180
FCQSIGEVTEVRIM+ K+S + KG+AFVTFRN +LASKAID LN+TEF+GK+I+CST+QA
Sbjct: 110 FCQSIGEVTEVRIMREKESGDGKGYAFVTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQA 169
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
K+RLF+GN+PRNW D++K + +GPGV VEL K+ +N NRGFAFIEYHNH CAEY
Sbjct: 170 KHRLFLGNVPRNWTESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYHNHACAEY 229
Query: 241 SRQKMTNPNFKLGTNAPTVSWAD--PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298
S+QKM+NP+FKL NAPTVSWA+ S ASQVKA+Y+KNLPR++TQ++LK LFEH
Sbjct: 230 SKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEH 289
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
HG+I KVV+PPAKPG+E +R GFVH+AER+S M+ALKNTE+YE+DG L+C+LAKPQADQ
Sbjct: 290 HGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQ 349
Query: 359 KSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQ 402
K+ +V +K L NYPP + YG+A +GALG GFGA+A++Q
Sbjct: 350 KANANTVQNVQKSQLQPNYPPLLSYGMAPSPFGALG-GFGASAYSQ 394
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/406 (59%), Positives = 309/406 (76%), Gaps = 15/406 (3%)
Query: 1 MPREMESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE 60
M R +AS A + +E S+E+VD D DNDPEE +EEE EE EEE IEE
Sbjct: 1 MSRTRTAASEAHDSME------SEERVDLDGDNDPEEILEEE----VEYEEVEEEEIEEI 50
Query: 61 VEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD 120
EE EE E + + + + E+E+EKK+H ELLALPPHGSEVY+GGIP DA+E DL+
Sbjct: 51 EEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKG 110
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180
FC SIGEVTEVRIM+ KDS + KG+AFVTFR+ +LA++AID LNNT+F+GK+I+CST+QA
Sbjct: 111 FCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQA 170
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
K+RLF+GN+PRNW D++K + +GPGV VEL K+ +N NRGFAFIEY+NH CAEY
Sbjct: 171 KHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEY 230
Query: 241 SRQKMTNPNFKLGTNAPTVSWAD--PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298
S+QKM+NP+FKL NAPTVSWA+ S ASQVKA+Y+KNLPR++TQ++LK LFEH
Sbjct: 231 SKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEH 290
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
HG+I KVV+PPAKPG+E +R GFVH+AER+S M+ALKNTE+YE+DG L+C+LAKPQADQ
Sbjct: 291 HGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQ 350
Query: 359 KSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGALGAGFGAAAFAQ 402
K+ +V +K L NYPP + YG+A +GALG GFGA+A++Q
Sbjct: 351 KTNTNTVQNVQKSQLQPNYPPLLSYGMAPSPFGALG-GFGASAYSQ 395
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/412 (52%), Positives = 293/412 (71%), Gaps = 42/412 (10%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVE----EEVEEEEEDADAGKSGD 79
+++VD D+DN Y E +++ EE IE+ VE E VEEE ED+ AG SG+
Sbjct: 8 EDRVDLDDDN-----------YMEEMDDDVEEQIEDGVEGGGDENVEEEYEDSKAGGSGE 56
Query: 80 MQI----------------------EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHD 117
Q+ DEDEK+KHA+LLALPPHGSE++IGG+P +A E D
Sbjct: 57 DQLLEVDESRIANEPLKDEENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALEED 116
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
LRD C+ IGE EVR+MK +DS E+KG+AF++F+ E+A KAI++L++ EFKG+ IRCS
Sbjct: 117 LRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSL 176
Query: 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC 237
S++K+RLFIGN+P++W ++ +KV+ ++GPG +EL+KD +N S NRGFAF+EY+N+ C
Sbjct: 177 SESKHRLFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNNAC 236
Query: 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLF 296
A+Y RQKM++ NFKL N PTVSWADP++ D S A+QVKA+YVKN+P N T +QLK+LF
Sbjct: 237 ADYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELF 296
Query: 297 EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356
+ HG +TKVV+PPAK GQ K GF+HFAERSSA+KA+K+TEK+E+DGQAL+ SLAKPQ+
Sbjct: 297 QRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQS 356
Query: 357 DQKSAGGSVSEKPSLLQNYPPHIGYGLAGGT-YGALGAGFGAAA-FAQTTVW 406
D+K G V S N+ PH GYG GG YG+LG G+G +A F Q ++
Sbjct: 357 DKKFEG--VHPYSSGHPNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIY 406
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/408 (52%), Positives = 291/408 (71%), Gaps = 29/408 (7%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSG----- 78
DE+VD DE+N EE M+++ E E+++++ + V EE E EE+E + A ++G
Sbjct: 8 DERVDLDEENYMEE-MDDDVE-EQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKDQL 65
Query: 79 ------DMQIE-----------DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDF 121
D+ E DEDEK+KH ELLALPPHGSEV+IGG+P D E DLR+
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLREL 125
Query: 122 CQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
C+ +G++ EVR+MK +D+ ENKG+AFV F+ E+A KAI+++++ EFKGK +RCS S+ K
Sbjct: 126 CEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETK 185
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+RLFIGN+P+ W +D +KVV VGPGV +EL+KD +N S NRGFAF+ Y+N+ CA+YS
Sbjct: 186 HRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYS 245
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
RQKM + +FKL N PTV+WADP+N D S +SQVKA+YVKN+P NVT +QLK+LF HG
Sbjct: 246 RQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHG 305
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+TKVV+PP K G +++ GF+H+AERSSA+KA+K+TEKYE+DGQ LE LAKPQAD+K
Sbjct: 306 EVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKP 364
Query: 361 AGGSVSEKPSLLQNYPPHIGYG-LAGGTYGALGAGFG-AAAFAQTTVW 406
GG + P L N+ PH YG +G YG+LGAG+G AA + Q ++
Sbjct: 365 DGG-YAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIY 411
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/408 (51%), Positives = 290/408 (71%), Gaps = 29/408 (7%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSG----- 78
DE+VD DE+N EE M+++ E E+++++ + +E E VEE E + A ++G
Sbjct: 8 DERVDLDEENYMEE-MDDDVE-EQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQL 65
Query: 79 ------DMQIE-----------DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDF 121
D+ E DEDEK+KH ELLALPPHGSEV+IGG+P D E DLR+
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLREL 125
Query: 122 CQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
C+ +G++ EVR+MK +D+ E+KG+AFV F+ E+A KAI+++++ EFKGK +RCS S+ K
Sbjct: 126 CEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSETK 185
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+RLFIGN+P+ W +D +KVV VGPGV +EL+KD +N S NRGFAF+ Y+N+ CA+YS
Sbjct: 186 HRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYS 245
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
RQKM + +FKL N PTV+WADP+N D S +SQVKA+YVKN+P NVT +QLK+LF HG
Sbjct: 246 RQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHG 305
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+TKVV+PP K G +++ GF+H+AERSSA+KA+K+TEKYE+DGQ LE LAKPQAD+K
Sbjct: 306 EVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKP 364
Query: 361 AGGSVSEKPSLLQNYPPHIGYG-LAGGTYGALGAGFG-AAAFAQTTVW 406
GG + P L N+ PH YG +G YG+LGAG+G AA + Q ++
Sbjct: 365 DGG-YAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIY 411
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/408 (51%), Positives = 290/408 (71%), Gaps = 29/408 (7%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSG----- 78
DE+VD DE+N EE M+++ E E+++++ + +E E VEE E + A ++G
Sbjct: 8 DERVDLDEENYMEE-MDDDVE-EQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQL 65
Query: 79 ------DMQIE-----------DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDF 121
D+ E DEDEK+KH ELLALPPHGSEV+IGG+P D E DLR+
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLREL 125
Query: 122 CQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
C+ +G++ EVR+MK +D+ E+KG+AFV F+ E+A KAI+++++ EFKGK +RCS S+ K
Sbjct: 126 CEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRCSLSETK 185
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+RLFIGN+P+ W +D +KVV VGPGV +EL+KD +N S NRGFAF+ Y+N+ CA+YS
Sbjct: 186 HRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADYS 245
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
RQKM + +FKL N PTV+WADP+N D S +SQVKA+YVKN+P NVT +QLK+LF HG
Sbjct: 246 RQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHG 305
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+TKVV+PP K G +++ GF+H+AERSSA+KA+K+TEKYE+DGQ LE LAKPQAD+K
Sbjct: 306 EVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKKP 364
Query: 361 AGGSVSEKPSLLQNYPPHIGYG-LAGGTYGALGAGFG-AAAFAQTTVW 406
GG + P L N+ PH YG +G YG+LGAG+G AA + Q ++
Sbjct: 365 DGG-YAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIY 411
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/331 (58%), Positives = 244/331 (73%), Gaps = 29/331 (8%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
+D +K KHAELL LPPHGSEVY+GGI +DA+ DL++ C+ +GEV EVRIM GK E+
Sbjct: 163 KDGKDKDKHAELLGLPPHGSEVYLGGISNDATSEDLKELCEPVGEVVEVRIMPGK--RES 220
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
KG+AF+TF+ +LA KAI+KL+N FKGKKIR S+SQAK +LF+GN+P +W +DL+K V
Sbjct: 221 KGYAFITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAV 280
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV ++L+KD + + NRG+ F+EY+N+ CAEYSRQKM+ PNFKL TNAPTVSWA
Sbjct: 281 EEVGPGVLKIDLIKDPR-TDRNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPTVSWA 339
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
DP+N DS+ SQVK+VYVKNLP+NVTQ QLKKLFEHHG ITK+V+PP+K G + NR GFV
Sbjct: 340 DPKNGDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHD-NRYGFV 398
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------------SAGGSVSEKP 369
HF +R AMKALKNTEKYELDGQ L+CSLAKP AD+K + GG + P
Sbjct: 399 HFKDRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSSSHKSSAKGGPLLHAP 458
Query: 370 SLLQNYPPHIGYGLA--GGTYGALGAGFGAA 398
+GYG+ YGA +GAA
Sbjct: 459 ---------LGYGIMPRPDAYGA-PPSYGAA 479
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 244/324 (75%), Gaps = 12/324 (3%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 85 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 144
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 145 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 202
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 203 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 261
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 262 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 321
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 322 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 379
Query: 372 LQNYPPHIGYGLAG--GTYGALGA 393
L +YPP +GYG+ G YGA A
Sbjct: 380 LPSYPP-LGYGIMSVPGAYGAAPA 402
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 85 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 144
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 145 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 202
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 203 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 261
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 262 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 321
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 322 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 379
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 380 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 411
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 85 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 144
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 145 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 202
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 203 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 261
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 262 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 321
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 322 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 379
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 380 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 411
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 85 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 144
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 145 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 202
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 203 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 261
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 262 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 321
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 322 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 379
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 380 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 411
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 97 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 156
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 157 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 214
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 215 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 273
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 274 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 333
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 334 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 391
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 392 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 423
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/338 (56%), Positives = 250/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 98 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 157
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA KA+ +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 158 GKDDS--RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 215
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +KVV EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 216 DDFRKVVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 274
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 275 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 334
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 335 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 392
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 393 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 424
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 241/321 (75%), Gaps = 12/321 (3%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 494 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 553
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA K + +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 554 GKDDS--RGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 611
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +K V EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 612 DDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 670
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS+ SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 671 APTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 730
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 731 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 788
Query: 372 LQNYPPHIGYGLAG--GTYGA 390
L +YPP +GYG+ G YGA
Sbjct: 789 LPSYPP-LGYGIMSVPGAYGA 808
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/338 (56%), Positives = 247/338 (73%), Gaps = 17/338 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 84 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 143
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA K + +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 144 GKDDS--RGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 201
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +K V EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 202 DDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 260
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 261 APTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 320
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 321 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 378
Query: 372 LQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
L +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 379 LPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 410
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/305 (60%), Positives = 238/305 (78%), Gaps = 10/305 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
+D EK+ +AELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+MKGKD S
Sbjct: 72 KDGIEKENYAELLALPPHGSEVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKDDS-- 129
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
+G+AFVTFR +LA +A+ +LNN + KGK+IR S+SQAK +LFIGN+P +W +D +K V
Sbjct: 130 RGYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAV 189
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQKM+ P FKL TNAPTVSWA
Sbjct: 190 EEVGPGVLKADLMK-VSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWA 248
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
DP+N DS+ SQVK+VYVKNLP+NVTQ +LKKLFEHHG ITKVV+PP++ G + NR GFV
Sbjct: 249 DPKNNDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHD-NRYGFV 307
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSLLQNYPPH 378
HF +RS AM+AL+NTE+YEL GQ L+CSLAKP A D++ + S + P LL +YPP
Sbjct: 308 HFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAP-LLPSYPP- 365
Query: 379 IGYGL 383
+GYG+
Sbjct: 366 LGYGI 370
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/359 (52%), Positives = 261/359 (72%), Gaps = 15/359 (4%)
Query: 59 EEVEEEVEEEE------EDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHD 112
E+V+EE+ E++ E AD + I+DED ++K++ LL+LPPHGSEV+IGG+P D
Sbjct: 68 EDVQEEIAEDDDNHIDIETADDDEKPPSPIDDED-REKYSHLLSLPPHGSEVFIGGLPRD 126
Query: 113 ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172
E DLRD C+ IGE+ EVR+MK +DS ++KG+AFV F+ ++A KAI++L++ EFKGK
Sbjct: 127 VGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKT 186
Query: 173 IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
IRCS S+ K RLFIGNIP+NW ++ +KV+ +VGPGV +EL+KD N++ NRGFAF+ Y
Sbjct: 187 IRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Query: 233 HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--DSSGASQVKAVYVKNLPRNVTQD 290
+N+ CA+YSRQKM + NFKL NAPTV+WADP++ S+ A+QVKA+YVKN+P N + +
Sbjct: 247 YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTE 306
Query: 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350
QLK+LF+ HG +TK+V PP K G K GFVH+AERSSA+KA+K+TE+YE++GQ LE
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV 364
Query: 351 LAKPQADQKSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGALGAGFG-AAAFAQTTVW 406
LAKPQA++K S S P+ P G G A YGA+GAG G A +F+Q ++
Sbjct: 365 LAKPQAERKHDPSSYSYGAAPTPAPFVHPTFG-GFAAAPYGAMGAGLGIAGSFSQPMIY 422
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 240/321 (74%), Gaps = 12/321 (3%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
K+ + +D EK KHAELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+M+
Sbjct: 463 KTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR 522
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
GKD S +G+AFV FR LA K + +LNN + KGK+IR S+SQAK +LFIGN+P +W
Sbjct: 523 GKDDS--RGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTD 580
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+D +K V EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +N
Sbjct: 581 DDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN 639
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
APTVSWADP+N DS SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G +
Sbjct: 640 APTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 699
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSL 371
NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P L
Sbjct: 700 -NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-L 757
Query: 372 LQNYPPHIGYGLAG--GTYGA 390
L +YPP +GYG+ G YGA
Sbjct: 758 LPSYPP-LGYGIMSVPGAYGA 777
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/305 (60%), Positives = 236/305 (77%), Gaps = 10/305 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
+D EK+K+AELLALPPHGSEVY GGI D S DL+ C+ +GEV EVR+MKGKD S
Sbjct: 100 KDGIEKEKYAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKDDS-- 157
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
+G+AFVTFR +LA +A+ +LNN + KGK+IR S+SQAK +LFIGN+P +W +D +K V
Sbjct: 158 RGYAFVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAV 217
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQKM+ P FKL TNAPTVSWA
Sbjct: 218 EEVGPGVLKADLMK-VSSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWA 276
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
DP+N DS+ SQVK+VYVKNLP+NVTQ QLK LFE HG ITKVV+PP++ G + NR GFV
Sbjct: 277 DPKNNDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHD-NRYGFV 335
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKPSLLQNYPPH 378
HF +RS AM+AL+NTE+YEL GQ L+CSLAKP A D++ + S + P LL +YPP
Sbjct: 336 HFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAP-LLPSYPP- 393
Query: 379 IGYGL 383
+GYG+
Sbjct: 394 LGYGI 398
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/376 (50%), Positives = 265/376 (70%), Gaps = 11/376 (2%)
Query: 36 EETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELL 95
EE E+Y + + E +E I E+ + ++ E D D + + DE+E++K++ LL
Sbjct: 52 EERDVEDYGDTKGGDMEAQEEIAEDDDNHIDIETADDDEKPASPI---DEEEREKYSHLL 108
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
+LPPHGSEV+IGG+P D E DLRD C+ IGE+ EVR+MK +DS ++KG+AFV F+ ++
Sbjct: 109 SLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 168
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A KAI+ L++ EFKGK IRCS S+ K RLFIGNIP+NW ++ +KV+ VGPGV +EL+
Sbjct: 169 AQKAIEDLHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVGPGVENIELI 228
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--DSSGAS 273
KD N++ NRGFAF+ Y+N+ CA+YSRQKM + NFKL NAPTV+WADP++ S+ A+
Sbjct: 229 KDPANTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAA 288
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
QVKA+YVKN+P N + +QLK+LF+ HG +TK+V PP K G K GFVH+AERSSA+KA
Sbjct: 289 QVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKA 346
Query: 334 LKNTEKYELDGQALECSLAKPQADQKSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGAL 391
+K+TE+YE++GQ LE LAKPQA++K S S P+ P G G A YGA+
Sbjct: 347 VKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPNPAPFVHPTFG-GFAAAPYGAM 405
Query: 392 GAGFG-AAAFAQTTVW 406
GAG G A +F+Q ++
Sbjct: 406 GAGLGIAGSFSQPMIY 421
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/319 (59%), Positives = 238/319 (74%), Gaps = 10/319 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
+DE+EK+KHAELLALPPHG+EVY+GG+ D S DL+ +S+GEV EVR M+GK +N
Sbjct: 85 KDENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVR-MRGK--GDN 141
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
K +AF+ FR E+A KAI KL N + KGKKI+ S+SQAK RLFIGN+PR+W +D + V
Sbjct: 142 KAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAV 201
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV V+L+K S N+G+ FIEY+N CAEY++QKM+ P FKL TNAPTVSWA
Sbjct: 202 EEVGPGVLQVDLMK-APGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWA 260
Query: 263 DPRNVD-SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
DP+N + ++ +QVK++YVKN+P+ VTQ+QLKKLFEH G ITKVV+PPAK G E NR GF
Sbjct: 261 DPKNANEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHE-NRYGF 319
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK--SAGGSVSEKPSLLQNYPPHI 379
VHF ERS AMKALKNTE+YELDGQ L+CSLAKP AD+K + ++ LL +Y P +
Sbjct: 320 VHFKERSMAMKALKNTERYELDGQLLDCSLAKPPADKKDDTVSAPTAKGAPLLPSYAP-L 378
Query: 380 GYGLAGGTYGALGAGFGAA 398
GYGL G Y LG G A
Sbjct: 379 GYGLV-GAYNPLGNGLAGA 396
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/332 (54%), Positives = 242/332 (72%), Gaps = 16/332 (4%)
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
+E+EK+KHA+LLALPPHGSEV+IGG+P D E +LRD C+ IGE+ E+R+MK KDS E+K
Sbjct: 88 NEEEKEKHAQLLALPPHGSEVFIGGLPRDVIEDELRDLCEPIGEIFEIRLMKDKDSGESK 147
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203
GFAFV F++ E+A KAI++L++ ++KGK +RCS S+ K RLFIGN+P+N ++ +K++
Sbjct: 148 GFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIE 207
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
EVGPGV +EL+KD + + NRGFAFI Y+N+ CA+YSRQKM N NFKL + PTVSWAD
Sbjct: 208 EVGPGVEVIELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLDGHTPTVSWAD 267
Query: 264 PRNV---DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
P+ S+ +SQVKA+YVKN+P N + +QLK LF+ HG +TKVV+PP K G K G
Sbjct: 268 PKGTPPDHSAASSQVKALYVKNIPENTSTEQLKGLFQRHGDVTKVVMPPGKAG--KRDFG 325
Query: 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG-----GSVSEKPSLLQNY 375
F+H+AERSSA+KA+++ EKYE+DGQ LE LAKPQAD+K V P L Y
Sbjct: 326 FIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKPQADKKPDAAYPYNAGVHPNPVPLPAY 385
Query: 376 PPHIGYGLAGGTYGALGAGFG-AAAFAQTTVW 406
G AG YG+LG GFG A++F Q ++
Sbjct: 386 -----SGFAGNPYGSLGTGFGVASSFQQPVIY 412
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/423 (46%), Positives = 277/423 (65%), Gaps = 31/423 (7%)
Query: 5 MESASAAAEPVELEKPVGSDEKVDFDEDNDPEETME--------------------EEYE 44
M AS ++E + E+ V D VD DE+ D E E
Sbjct: 1 MSGASGSSEDLHDEEQVDIDGAVDLDEEVDDASAEHEDEEEVEEEKAQGLDLDIDVEAQE 60
Query: 45 YEEVEEEEEEEVIEEEVEEEVEEEE----EDADAGKSGDMQI-EDEDEK--KKHAELLAL 97
++ +E+++ +V+ + + + E + E+ DA D+ I ED++EK +K +LL
Sbjct: 61 GDDSQEDQDIDVLNGDHDHGITEADLAAAEETDAHVGADVAIVEDKEEKDAEKSGDLLKR 120
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PPHGSE+++GGI D +E DLR C S G+V EVR++K KD+ +NKG+AFVTF N E A
Sbjct: 121 PPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAFVTFLNEECAE 180
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KAI+ LN++E KG+K+R S SQ+K+RLF+GNIP+ W E+L+ V+SE GPG+ VEL+KD
Sbjct: 181 KAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQGPGIQSVELLKD 240
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVK 276
K NRGF F+EY+NH CAE++R++M+ +F+LGTNAPT+SWADPR+ D S SQVK
Sbjct: 241 PKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGTNAPTISWADPRSGPDVSAMSQVK 300
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
VYV+NLP +VT++QL+KLFE HG I KVV+P KPGQ K GFVHF++R+ A+KA++
Sbjct: 301 VVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQALKAIEK 360
Query: 337 TEKYELDGQALECSLAKPQADQKSAGGSVSEKP---SLLQNYPPHIGYGLAGGTYGALGA 393
TE YEL+G+ LE SLAKP A++++AGG + P LL + GYG G Y ++G
Sbjct: 361 TEVYELEGRILETSLAKPPAEKRAAGGEPAYPPQRAGLLPQHQNRSGYGYGGDVYNSVGG 420
Query: 394 GFG 396
+G
Sbjct: 421 AYG 423
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 192/317 (60%), Positives = 229/317 (72%), Gaps = 9/317 (2%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
DEDEK+ HAELL+LPPHGSEVY+GGI D S DLR C+SIGEV EVR M GK
Sbjct: 78 RDEDEKESHAELLSLPPHGSEVYVGGISSDVSSDDLRKLCESIGEVVEVR-MPGKSG--- 133
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
K +AFV FR ELA KAI KLNN + KGKKIR S+SQAK RLFIGNIP W + ++ V
Sbjct: 134 KLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAV 193
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV V LVK + S N+G+ FIEY+N CAEY+++KM+ P FKL NAP VSWA
Sbjct: 194 EEVGPGVVKVNLVKAPR-SDTNKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWA 252
Query: 263 DPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
D +N +S+ SQVK++Y+KNLP+ VTQ+QLK+LFEH G +TKVV+PPAK G E NR GF
Sbjct: 253 DTKNGGESASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHE-NRYGF 311
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
VHF ERS AMKALK+TE+YELDG L+CSLAKP A++K SV + LL +Y P +GY
Sbjct: 312 VHFKERSMAMKALKDTERYELDGHLLDCSLAKPLAEKKDDTTSVPKGGPLLPSYTP-LGY 370
Query: 382 GLAGGTYGALGAGFGAA 398
GL G Y LG G A
Sbjct: 371 GLM-GAYNPLGNGLAGA 386
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/389 (48%), Positives = 267/389 (68%), Gaps = 25/389 (6%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYE----------------EVEEEEEEEVIEEEVEEEVEE 67
D++VD DE+N EE M+++ E + VEE E EE E +++
Sbjct: 8 DDRVDLDEENYMEE-MDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQFP 66
Query: 68 EEEDADAGKSGD---MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQS 124
E E +D G D + DE+E++KH ELL+ PPHGSEV+IGG+P D S+ D+R+ C+
Sbjct: 67 EGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEP 126
Query: 125 IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRL 184
+G++ E++++K +++ E+KG+AFV ++ E+A KAID ++N EFKGK +RC S+ K+RL
Sbjct: 127 MGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRL 186
Query: 185 FIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244
FIGNIP+ W ++ +K V VGPGV ++L+KD +N S NRGFAF+ Y+N+ CA++SRQK
Sbjct: 187 FIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQK 246
Query: 245 MTNPNFKLGTNAPTVSWADPRNV--DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
M++ FKL PTV+WADP+ S+ ASQVKA+YVKN+P NVT +QLK+LF HG +
Sbjct: 247 MSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEV 306
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG 362
TKVV+PP K K GF+H+AERSSA+KA+K TEKYE+DGQALE +AKPQA++K G
Sbjct: 307 TKVVMPPGK-ASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDG 365
Query: 363 GSVSEKPSLLQNYPPHIGYG-LAGGTYGA 390
G + P L N+ PH GYG +G YG+
Sbjct: 366 G-YAYNPGLHPNHLPHPGYGNFSGNLYGS 393
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 192/328 (58%), Positives = 238/328 (72%), Gaps = 15/328 (4%)
Query: 79 DMQIEDED-----EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
D +I D+D EK+KHAELLALPPHG+EVY+GG+ D S DL+ +S+GEV EVR
Sbjct: 75 DSKIVDDDPKDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVR- 133
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNW 193
M+GK +NK +AF+ FR E+A KAI KL+N + KGKKI+ S+SQAK RLFIGN+P +W
Sbjct: 134 MRGK--GDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDW 191
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253
+D + V EVGPGV V+L+K S N+G+ FIEY+N CAEY++QKM+ P FKL
Sbjct: 192 TPDDFKTAVEEVGPGVLKVDLMK-APGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 250
Query: 254 TNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
TNAPTVSWAD +N +++ SQVK++YVKNLP+ VTQ+QLKKLFEH G ITKVV+PPAK
Sbjct: 251 TNAPTVSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKS 310
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS--VSEKPS 370
G E NR GFVHF ERS MKALKNTE+YELDGQ L+CS AKP AD+K GS ++
Sbjct: 311 GHE-NRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRP 369
Query: 371 LLQNYPPHIGYGLAGGTYGALGAGFGAA 398
L +Y P +GYGLA G Y LG G A
Sbjct: 370 LPPSYAP-LGYGLA-GAYNPLGKGLAGA 395
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/416 (45%), Positives = 269/416 (64%), Gaps = 53/416 (12%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEE-------------EVEEEEE 70
+E+VD +EDN EE ++ VEE +E+ ++ E +V + E
Sbjct: 8 EERVDLEEDNYMEEMDDD------VEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDTE 61
Query: 71 DADAGKSGDMQIE------------DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDL 118
D + ++ +E DED+ +KHA+LLALPPHGSEV+IGG+ D E DL
Sbjct: 62 DKFSDDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEEDL 121
Query: 119 RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178
RD C+S+GE+ E+RI+K KDS E+KG+AF+ F+ E A KAI+ L+ E KGK IRCS S
Sbjct: 122 RDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCSLS 181
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
+K+RLFIGN+P++W ++ ++++ VGPGV +EL+KD +N + NRGFAF+ Y+N+ CA
Sbjct: 182 DSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNACA 241
Query: 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFE 297
+YSRQKM++ NFKL N+PTVSWADP+++ D+S A+QVKA+YVKN+P N T +QLK+LF+
Sbjct: 242 DYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKALYVKNIPENTTTEQLKELFQ 301
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357
HG +TKV +PP K G K F+H+AERSSA+KA+K TEKYE++GQ LE LAKPQ+D
Sbjct: 302 QHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSD 361
Query: 358 QKSAGGSVSEKPSLLQNYPPHI-----------------GYGLAGGTYGALGAGFG 396
+KS G + +YP H+ GYG+ G + + G G
Sbjct: 362 KKSDGAY----SHISGSYPNHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRG 413
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 189/319 (59%), Positives = 235/319 (73%), Gaps = 10/319 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
+D +EK+KHAELLALPPHG+EVY+GG+ D S DL+ +S+GEV EVR M+GK +N
Sbjct: 94 KDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVR-MRGK--GDN 150
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
K +AF+ FR E+A KAI KL+N + KGKKI+ S+SQAK RLFIGN+P +W +D + V
Sbjct: 151 KTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAV 210
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
EVGPGV V+L+K S N+G+ FIEY+N CAEY++QKM+ P FKL TNAPTVSWA
Sbjct: 211 EEVGPGVLKVDLMK-APGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWA 269
Query: 263 DPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
D +N +++ SQVK++YVKNLP+ VTQ+QLKKLFEH G ITKVV+PPAK G E NR GF
Sbjct: 270 DHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHE-NRYGF 328
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS--VSEKPSLLQNYPPHI 379
VHF ERS MKALKNTE+YELDGQ L+CS AKP AD+K GS ++ L +Y P +
Sbjct: 329 VHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-L 387
Query: 380 GYGLAGGTYGALGAGFGAA 398
GYGLA G Y LG G A
Sbjct: 388 GYGLA-GAYNPLGKGLAGA 405
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 278/423 (65%), Gaps = 33/423 (7%)
Query: 5 MESASAAAEPVELEKPVGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEE 64
M ASA+ E V DE++D D D +PE+ +++E + EE+ ++E ++ ++ E+
Sbjct: 1 MSDASASPE-------VHDDERIDIDGDVEPEDVIDDETDGIVEEEKADQEGLDLDMNED 53
Query: 65 VEEEEE----------------DADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGG 108
E+E AD G+S D+ D+DE+ K LL+ PPHGSEV+IGG
Sbjct: 54 EGGEDEAYTTDHENGLQNGENASADLGESVDV---DDDEETK--SLLSRPPHGSEVFIGG 108
Query: 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168
+ D +E DLR+ C GE+ EVRI+K K++ NKG+AFVT+ N E A KAI+ L N+E
Sbjct: 109 VTRDTNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSEL 168
Query: 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
KG+K+R S SQAK+RLFIGNIP++W + +L+K+++E GPGV GVEL+KD +N NRGFA
Sbjct: 169 KGRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFA 228
Query: 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVYVKNLPRNV 287
F+EY+NH CA+++R+ M+ +F+LG N PTVSWADPR + + SQ+K VYV+NLP V
Sbjct: 229 FVEYYNHACADHARKLMSRSSFRLGNNVPTVSWADPRTGAEPAATSQIKVVYVRNLPEAV 288
Query: 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
T++QL+ LFEHHG ITKVV+P +KPGQ K GFVHFA+R+ A+KA++ TEKYEL+G+ L
Sbjct: 289 TEEQLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYELEGRVL 348
Query: 348 ECSLAKPQADQKSAGGSVS-EKPSLLQNYPPHI-GYGLAGGTYGAL--GAGFGAAAFAQT 403
E SLAKP ++K ++ ++ +L P Y Y + G G+G + Q
Sbjct: 349 ESSLAKPPVEKKGMDQPLAPQRLGILSQLQPRTAAYSYPVDIYNNIGTGGGYGQNRYNQP 408
Query: 404 TVW 406
++
Sbjct: 409 LIY 411
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 190/329 (57%), Positives = 235/329 (71%), Gaps = 10/329 (3%)
Query: 73 DAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
D K D + E+EK+KHAELLALPPHG+EVY+GGI D S DL+ +S+GEV EVR
Sbjct: 74 DESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVR 133
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192
M+GK +N+ +AF+ FR +A KAI L+N + KGKKI+ S SQAK RLFIGN+P +
Sbjct: 134 -MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHD 190
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
W +D + V EVGPGV VEL+K N+G+ FIEY+N CAEY++QKM+ P FKL
Sbjct: 191 WTHDDFKTAVEEVGPGVLKVELMK-APGLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKL 249
Query: 253 GTNAPTVSWADPRNVD-SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
TNAPTVSWADP+N + ++ +QVK++YVKNLP+ VTQ+QLKKLFEH G ITKVVVPPAK
Sbjct: 250 DTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAK 309
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS--VSEKP 369
G E NR GFVHF ER AMKALKNTE+YELDGQ L+CSLAKP AD+K + S ++
Sbjct: 310 SGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGG 368
Query: 370 SLLQNYPPHIGYGLAGGTYGALGAGFGAA 398
LL +Y P +GYGL G Y G G A
Sbjct: 369 PLLPSYAP-LGYGLVGA-YNPRGKGLADA 395
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 190/329 (57%), Positives = 235/329 (71%), Gaps = 10/329 (3%)
Query: 73 DAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
D K D + E+EK+KHAELLALPPHG+EVY+GGI D S DL+ +S+GEV EVR
Sbjct: 75 DESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVR 134
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192
M+GK +N+ +AF+ FR +A KAI L+N + KGKKI+ S SQAK RLFIGN+P +
Sbjct: 135 -MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHD 191
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
W +D + V EVGPGV VEL+K N+G+ FIEY+N CAEY++QKM+ P FKL
Sbjct: 192 WTHDDFKTAVEEVGPGVLKVELMK-APGLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKL 250
Query: 253 GTNAPTVSWADPRNVD-SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
TNAPTVSWADP+N + ++ +QVK++YVKNLP+ VTQ+QLKKLFEH G ITKVVVPPAK
Sbjct: 251 DTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAK 310
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS--VSEKP 369
G E NR GFVHF ER AMKALKNTE+YELDGQ L+CSLAKP AD+K + S ++
Sbjct: 311 SGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGG 369
Query: 370 SLLQNYPPHIGYGLAGGTYGALGAGFGAA 398
LL +Y P +GYGL G Y G G A
Sbjct: 370 PLLPSYAP-LGYGLV-GAYNPRGKGLADA 396
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/359 (51%), Positives = 255/359 (71%), Gaps = 23/359 (6%)
Query: 59 EEVEEEVEEEE------EDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHD 112
E+V+EE+ E++ E AD + I+DED ++K++ LL+LPPHGSEV+IGG+P D
Sbjct: 48 EDVQEEIAEDDDNHIDIETADDDEKPPSPIDDED-REKYSHLLSLPPHGSEVFIGGLPRD 106
Query: 113 ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172
E DLRD C+ IGE+ EVR+MK +DS ++KG+AFV F+ ++A KAI++L++ EFKGK
Sbjct: 107 VGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKT 166
Query: 173 IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
IRCS S+ K RLFIGNIP+NW ++ +KV+ +VGPG D N++ NRGFAF+ Y
Sbjct: 167 IRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG--------DPTNTTRNRGFAFVLY 218
Query: 233 HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--DSSGASQVKAVYVKNLPRNVTQD 290
+N+ CA+YSRQKM + NFKL NAPTV+WADP++ S+ A+QVKA+YVKN+P N + +
Sbjct: 219 YNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTE 278
Query: 291 QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350
QLK+LF+ HG +TK+V PP K G K GFVH+AERSSA+KA+K+TE+YE++GQ LE
Sbjct: 279 QLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV 336
Query: 351 LAKPQADQKSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGALGAGFG-AAAFAQTTVW 406
LAKPQA++K S S P+ P G G A YGA+GAG G A +F+Q ++
Sbjct: 337 LAKPQAERKHDPSSYSYGAAPTPAPFVHPTFG-GFAAAPYGAMGAGLGIAGSFSQPMIY 394
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 190/329 (57%), Positives = 235/329 (71%), Gaps = 10/329 (3%)
Query: 73 DAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
D K D + E+EK+KHAELLALPPHG+EVY+GGI D S DL+ +S+GEV EVR
Sbjct: 75 DESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVR 134
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192
M+GK +N+ +AF+ FR +A KAI L+N + KGKKI+ S SQAK RLFIGN+P +
Sbjct: 135 -MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHD 191
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
W +D + V EVGPGV VEL+K N+G+ FIEY+N CAEY++QKM+ P FKL
Sbjct: 192 WTHDDFKTAVEEVGPGVLKVELMK-APGLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKL 250
Query: 253 GTNAPTVSWADPRNVD-SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
TNAPTVSWADP+N + ++ +QVK++YVKNLP+ VTQ+QLKKLFEH G ITKVVVPPAK
Sbjct: 251 DTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAK 310
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS--VSEKP 369
G E NR GFVHF ER AMKALKNTE+YELDGQ L+CSLAKP AD+K + S ++
Sbjct: 311 SGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGG 369
Query: 370 SLLQNYPPHIGYGLAGGTYGALGAGFGAA 398
LL +Y P +GYGL G Y G G A
Sbjct: 370 PLLPSYAP-LGYGLV-GAYNPRGKGLADA 396
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 189/385 (49%), Positives = 261/385 (67%), Gaps = 41/385 (10%)
Query: 59 EEVEEEVEEEE------EDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHD 112
E+V+EE+ E++ E AD + I+DED ++K++ LL+LPPHGSEV+IGG+P D
Sbjct: 68 EDVQEEIAEDDDNHIDIETADDDEKPPSPIDDED-REKYSHLLSLPPHGSEVFIGGLPRD 126
Query: 113 ASEHDLRDFCQSIGEVTEVR--------------IMKGKDSSENKGFAFVTFRNVELASK 158
E DLRD C+ IGE+ EVR +MK +DS ++KG+AFV F+ ++A K
Sbjct: 127 VGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVAFKTKDVAQK 186
Query: 159 AIDKLNNTEFK------------GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
AI++L++ EFK GK IRCS S+ K RLFIGNIP+NW ++ +KV+ +VG
Sbjct: 187 AIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVG 246
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
PGV +EL+KD N++ NRGFAF+ Y+N+ CA+YSRQKM + NFKL NAPTV+WADP++
Sbjct: 247 PGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS 306
Query: 267 V--DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
S+ A+QVKA+YVKN+P N + +QLK+LF+ HG +TK+V PP K G K GFVH+
Sbjct: 307 SPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHY 364
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVS--EKPSLLQNYPPHIGYG 382
AERSSA+KA+K+TE+YE++GQ LE LAKPQA++K S S P+ P G G
Sbjct: 365 AERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFG-G 423
Query: 383 LAGGTYGALGAGFG-AAAFAQTTVW 406
A YGA+GAG G A +F+Q ++
Sbjct: 424 FAAAPYGAMGAGLGIAGSFSQPMIY 448
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 256/360 (71%), Gaps = 17/360 (4%)
Query: 59 EEVEEEVEEEE------EDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHD 112
E+V+EE+ E++ E AD + I+DED ++K++ LL+LPPHGSEV+IGG+P D
Sbjct: 68 EDVQEEIAEDDDNHIDIETADDDEKPPSPIDDED-REKYSHLLSLPPHGSEVFIGGLPRD 126
Query: 113 ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172
E DLRD C+ IGE+ EVR+MK +DS ++KG+AFV F+ ++A KAI++L++ EFK
Sbjct: 127 VGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASS 186
Query: 173 I-RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE 231
CS S + RLFIGNIP+NW ++ +KV+ +VGPGV +EL+KD N++ NRGFAF+
Sbjct: 187 TANCSLSLSN-RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVL 245
Query: 232 YHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--DSSGASQVKAVYVKNLPRNVTQ 289
Y+N+ CA+YSRQKM + NFKL NAPTV+WADP++ S+ A+QVKA+YVKN+P N +
Sbjct: 246 YYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTST 305
Query: 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349
+QLK+LF+ HG +TK+V PP K G K GFVH+AERSSA+KA+K+TE+YE++GQ LE
Sbjct: 306 EQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Query: 350 SLAKPQADQKSAGGSVS--EKPSLLQNYPPHIGYGLAGGTYGALGAGFG-AAAFAQTTVW 406
LAKPQA++K S S P+ P G G A YGA+GAG G A +F+Q ++
Sbjct: 364 VLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFG-GFAAAPYGAMGAGLGIAGSFSQPMIY 422
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 188/317 (59%), Positives = 225/317 (70%), Gaps = 10/317 (3%)
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
DE K H ELLALPPHGSEVY+GGI D S DL+ C+S+GEV EVR M GK +
Sbjct: 78 DEGGKGSHDELLALPPHGSEVYVGGIASDVSSDDLKKLCESVGEVVEVR-MPGK---SGR 133
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203
+AFV FR ELASKAI KLNN + KGKKIR S+SQAK RLFIGNIP NW + +K
Sbjct: 134 LYAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFKKAAE 193
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
EVGPGV V LVK +S N+G+ FIEY+N CAEY+++ M+ P FKL NAP VSWAD
Sbjct: 194 EVGPGVLKVNLVK-APHSDTNKGYGFIEYYNQACAEYAKKMMSTPEFKLDKNAPNVSWAD 252
Query: 264 PRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
+N +S+ +QVK++YVKNLP+ VTQ+QLKKLFEH G +TKVV+PPAK G E NR GFV
Sbjct: 253 TKNGGESASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHE-NRYGFV 311
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
HF ERS AMKAL++TE++ELDGQ L+CSLAKP AD+K + P LL +Y P +GYG
Sbjct: 312 HFKERSMAMKALEDTERFELDGQLLDCSLAKPLADKKDDTSAPKGGP-LLPSYTP-VGYG 369
Query: 383 LAGGTYGALGAGFGAAA 399
L G Y LG G A
Sbjct: 370 LM-GAYNPLGNGLAVAG 385
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 227/309 (73%), Gaps = 9/309 (2%)
Query: 73 DAGKSGDMQ---IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D GK D+ EDE+E+ K ++LALPPHGSEV+IGG+P D +E DLR+ C+ +GE+
Sbjct: 73 DTGKGPDVAGGGPEDEEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIY 132
Query: 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNI 189
EVR+ K KD+ ENKGFAFVTF + E A +AI+ + + EFKG+ +RCS SQAK+RLF+GN+
Sbjct: 133 EVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNV 192
Query: 190 PRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249
P+ E+L + GPGV +E+ KD + + NRGF F+EY+NH CA+Y+RQK+++PN
Sbjct: 193 PKGLSEEELTNTIKGKGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPN 252
Query: 250 FKLGTNAPTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
FK+ + TVSWA+P+ SS A+QVK +YVKNLP NV+++++K LF+ HG +TK+V+
Sbjct: 253 FKVDGSQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVL 312
Query: 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSE 367
PPAK G +++ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP AD+K S
Sbjct: 313 PPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSH 368
Query: 368 KPSLLQNYP 376
+P NYP
Sbjct: 369 RPGGGPNYP 377
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/340 (54%), Positives = 239/340 (70%), Gaps = 20/340 (5%)
Query: 76 KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFC-QSIGEVTEVRIM 134
K+ + +D K KHAELLALPPHGSEVY+GGI D S DL+ C V VR+M
Sbjct: 140 KTKGVHQKDVTGKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMM 199
Query: 135 KGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWG 194
+GKD S +G+AFV FR LA K + +LNN + K IR S+SQAK +LFIGN+P +W
Sbjct: 200 RGKDDS--RGYAFVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSWT 256
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254
+D +K V EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL +
Sbjct: 257 DDDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDS 315
Query: 255 NAPTVSWADPRNVDSSGASQ-VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
NAPTVSWADP+N DS+ SQ VK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++ G
Sbjct: 316 NAPTVSWADPKNNDSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGG 375
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEKP 369
+ NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S + P
Sbjct: 376 HD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP 434
Query: 370 SLLQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
LL +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 435 -LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 467
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 155/279 (55%), Positives = 216/279 (77%), Gaps = 3/279 (1%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
EDEDE+ K ELLALPPHGS+V+IGG+P D +E DLR+ C+ +GE+ EVR+ K KD++EN
Sbjct: 100 EDEDERSKWDELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNEN 159
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
KGFAFVTF + + A +AI+ + + E+KG+ +RCS SQAK+RLFIGN+P+ E+L ++
Sbjct: 160 KGFAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNII 219
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
GPGV +E+ KD + + NRGF F+EY+NH CAEY+R K+++ NFK+ + TVSWA
Sbjct: 220 KGKGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWA 279
Query: 263 DPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
+P+ SS A+QVK +YVKNLP NV+++++K LF+ HG +TK+V+PPAK G +++ G
Sbjct: 280 EPKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRD-FG 338
Query: 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
FVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP AD+K
Sbjct: 339 FVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKK 377
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 226/309 (73%), Gaps = 11/309 (3%)
Query: 73 DAGKSGDMQ---IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT 129
D GK D+ EDE+E+ K ++LALPPHGSEV+IGG+P D +E DLR+ C+ +GE+
Sbjct: 73 DTGKGPDVAGGGPEDEEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIY 132
Query: 130 EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNI 189
EVR+ K KD+ ENKGFAFVTF + E A +AI+ + + EFKG+ +RCS SQAK+RLF+GN+
Sbjct: 133 EVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNV 192
Query: 190 PRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249
P+ E+L + GPGV +E+ K + + NRGF F+EY+NH CA+Y+RQK+++PN
Sbjct: 193 PKGLSEEELTNTIKGKGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPN 250
Query: 250 FKLGTNAPTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
FK+ + TVSWA+P+ SS A+QVK +YVKNLP NV+++++K LF+ HG +TK+V+
Sbjct: 251 FKVDGSQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVL 310
Query: 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSE 367
PPAK G +++ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP AD+K S
Sbjct: 311 PPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSH 366
Query: 368 KPSLLQNYP 376
+P NYP
Sbjct: 367 RPGGGPNYP 375
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 227/307 (73%), Gaps = 12/307 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN 142
EDE+EK K ELLALPP GSEV++GG+P D +E DLR C+ +GE+ EVR+MK K++ EN
Sbjct: 90 EDEEEKMKWEELLALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKEN 149
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVV 202
KGFAFVTF ++A AI++L++ + KG+ +RCS SQAK+RLF+GN+P+ E+L ++
Sbjct: 150 KGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSII 209
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
GPGV +E+ KD+ N S NRGF F+EY+NH CA+Y+RQK+++P+FK+ + TVSWA
Sbjct: 210 KGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWA 269
Query: 263 DPRNVDSSG------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+P+ SS A+QVK +YVKNLP NV+++++K LFE HG +TK+V+PPAK G ++
Sbjct: 270 EPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKR 329
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY- 375
+ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP +D+K S KP +Y
Sbjct: 330 D-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSFKPGGAPSYP 385
Query: 376 -PPHIGY 381
PP+ GY
Sbjct: 386 LPPYGGY 392
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 238/329 (72%), Gaps = 16/329 (4%)
Query: 65 VEEEEEDADAG----KSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD 120
+E +E+A AG K G +D+DEK+K ELLALP G EV+IGG+P D +E DLR+
Sbjct: 70 MEVAKEEAAAGDEMDKDGTDGPKDDDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRE 129
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180
C+ +GE+ EVR+MK KD+ ENKGFAFVTF ++A +AI++L++ + KG+ +RCS SQA
Sbjct: 130 LCEPLGEIHEVRLMKDKDTKENKGFAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQA 189
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
K+RLF+GN+P+ ++L ++ GPGV +E+ KD+ + S NRGF F+EY+NH CA+Y
Sbjct: 190 KHRLFVGNVPKGLSEDELTSIIKGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADY 249
Query: 241 SRQKMTNPNFKLGTNAPTVSWADPRN------VDSSGASQVKAVYVKNLPRNVTQDQLKK 294
SRQK+++P+FK+ + TVSWA+P+ SS A+QVK +YVKNLP NV+++++K
Sbjct: 250 SRQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKD 309
Query: 295 LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
LFE HG +TK+V+PPAK G +++ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP
Sbjct: 310 LFEVHGEVTKIVLPPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 368
Query: 355 QADQKSAGGSVSEKPSLLQNY--PPHIGY 381
+D+K S +P NY PP+ GY
Sbjct: 369 LSDKKP---DHSVRPGGPPNYPLPPYGGY 394
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/310 (52%), Positives = 229/310 (73%), Gaps = 10/310 (3%)
Query: 78 GDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK 137
GD EDE+EK+K ELLALPP GSEV+IGG+P D +E DL + C++ GE++EVR+MK K
Sbjct: 85 GDAGPEDEEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDK 144
Query: 138 DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSED 197
++ ENKGFAFVTF + A +AI+ L++ E KG+ +RCS SQAK+RLF+GN+P+ ++
Sbjct: 145 ETKENKGFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDE 204
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+ ++ GPGV +E+ KD+ + S NRGF F+EY+NH CA+Y++QK++ PNFK+ +
Sbjct: 205 LRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQL 264
Query: 258 TVSWADPRN----VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
TVSWA+P+ SS A+QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK G
Sbjct: 265 TVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAG 324
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQ 373
+++ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP D+K S KP
Sbjct: 325 NKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKP---DHSFKPGGAP 380
Query: 374 NY--PPHIGY 381
N+ PP+ GY
Sbjct: 381 NFPLPPYGGY 390
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 227/330 (68%), Gaps = 42/330 (12%)
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
+E+EK+KHA+LL+LPPHGSEV+IGG+P DA E DLRD C+ IG++ E+R+MK KD+ E+K
Sbjct: 91 NEEEKEKHAQLLSLPPHGSEVFIGGLPKDALEDDLRDLCEPIGDIFEIRLMKDKDTGESK 150
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203
GFAFV FR+ E+A KAI+++++ EFKGK +RCS S+ K RLF+GN+P+NW ++ +KVV
Sbjct: 151 GFAFVAFRSKEVAQKAIEEIHSKEFKGKTLRCSLSETKNRLFVGNVPKNWTEDEFRKVVE 210
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
EVGPGV +EL++D +N S NRGFAF+ Y+N+ CA+YSRQKM N NFKL N PTVSWAD
Sbjct: 211 EVGPGVDIIELIRDPQNPSRNRGFAFVLYYNNACADYSRQKMLNANFKLEGNTPTVSWAD 270
Query: 264 PRNV--DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
P+ S+ A+QVKA+YVKN+P N + +QLK+LF+ HG
Sbjct: 271 PKGTPDQSAAAAQVKALYVKNIPENTSTEQLKELFQRHG--------------------- 309
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
+A+++ EKY++DGQ LE LAKPQ D+K G V P+ L +P H+ +
Sbjct: 310 ----------EAVRDNEKYQIDGQVLEVVLAKPQTDKKPDG--VYPYPAAL--HPSHVTH 355
Query: 382 ----GLAGGTYGALGAGFG-AAAFAQTTVW 406
G AG Y +LG GFG A++F Q ++
Sbjct: 356 PAYGGFAGNPYSSLGGGFGVASSFQQPVIY 385
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 229/311 (73%), Gaps = 10/311 (3%)
Query: 77 SGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
GD EDE+EK+K ELLALPP GSEV+IGG+P D +E DL + C++ GE++EVR+MK
Sbjct: 84 GGDAGPEDEEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKD 143
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSE 196
K++ ENKGFAFVTF + A +AI+ L++ E KG+ +RCS SQAK+RLF+GN+P+ +
Sbjct: 144 KETKENKGFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSED 203
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256
+L+ ++ GPGV +E+ KD+ + S NRGF F+EY+NH CA+Y++QK++ PNFK+ +
Sbjct: 204 ELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQ 263
Query: 257 PTVSWADPRN----VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
TVSWA+P+ SS A+QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK
Sbjct: 264 LTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKA 323
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLL 372
G +++ GFVHFAERSSA+KA+K +EKYE+DGQ LE S+AKP D+K S KP
Sbjct: 324 GNKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKP---DHSFKPGGA 379
Query: 373 QNY--PPHIGY 381
N+ PP+ GY
Sbjct: 380 PNFPLPPYGGY 390
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 227/311 (72%), Gaps = 10/311 (3%)
Query: 77 SGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
GD EDE+EK+K ELLALPP GSEV+IGG+P D +E DL + C++ GE++EVR+MK
Sbjct: 84 GGDAGPEDEEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKD 143
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSE 196
K++ ENKGFAFVTF + A AI+ L++ E KG+ +RCS SQAK+RLF+GN+P+ +
Sbjct: 144 KETKENKGFAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSED 203
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256
+L+ ++ GPGV +E+ KD+ + S NRGF F+EY+NH CA+Y++QK++ PNFK+ +
Sbjct: 204 ELRNIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQ 263
Query: 257 PTVSWADPRN----VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
TVSWA+P+ SS A+QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK
Sbjct: 264 LTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKA 323
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLL 372
G +++ GFVHFAERSSA+KA+K EKYE+DGQ LE S+AKP D+K S KP
Sbjct: 324 GNKRD-FGFVHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKKP---DHSFKPGGA 379
Query: 373 QNY--PPHIGY 381
N+ PP+ GY
Sbjct: 380 PNFPLPPYGGY 390
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 162/298 (54%), Positives = 223/298 (74%), Gaps = 8/298 (2%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K+K ELLALPP GSEV+IGG+P D +E DLR+ C S GE+ EVR+MK K++ ENKGFAF
Sbjct: 90 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 149
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
V F E A +AI++L++ E KG+ +RCS SQAK+RLF+GN+P+ G E+L+K++ GP
Sbjct: 150 VNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 209
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN- 266
GV +E+ KD+ + S NRGF F+EY+NH CA+Y+RQK++ PNFK+ + TVSWA+P+
Sbjct: 210 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 269
Query: 267 -VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
SS A+QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK G +++ GFVHFA
Sbjct: 270 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFA 328
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY--PPHIGY 381
ERSSA+KA+K +EKYE +GQ LE S+AKP D+K S KP+ N+ PP+ GY
Sbjct: 329 ERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKP---DHSFKPAGAPNFPLPPYGGY 383
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 219/291 (75%), Gaps = 6/291 (2%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K+K ELLALPP GSEV+IGG+P D +E DLR+ C S GE+ EVR+MK K++ ENKGFAF
Sbjct: 93 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 152
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
V F + A +AI++L++ E KG+ +RCS SQAK+RLF+GN+P+ G E+L+K++ GP
Sbjct: 153 VNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 212
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN- 266
GV +E+ KD+ + S NRGF F+EY+NH CA+Y+RQK++ PNFK+ + TVSWA+P+
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 272
Query: 267 -VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
SS A+QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK G +++ GFVHFA
Sbjct: 273 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFA 331
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYP 376
ERSSA+KA+K +EKYE DGQ LE S+AKP D+K S KP+ N+P
Sbjct: 332 ERSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKKP---DHSFKPAGAPNFP 379
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/281 (55%), Positives = 206/281 (73%), Gaps = 17/281 (6%)
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192
+M+GKD S +G+AFV FR LA K + +LNN + KGK+IR S+SQAK +LFIGN+P +
Sbjct: 1 MMRGKDDS--RGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHS 58
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
W +D +K V EVGPGV +L+K + +++ NRG+ F+EY+NH CAEY+RQ+M++P FKL
Sbjct: 59 WTDDDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKL 117
Query: 253 GTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+NAPTVSWADP+N DS SQVK+VYVKNLP+NVTQ QLK+LFEHHG I KVV+PP++
Sbjct: 118 DSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG 177
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKSAGGSVSEK 368
G + NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D + S +
Sbjct: 178 GHD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGA 236
Query: 369 PSLLQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
P LL +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 237 P-LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 270
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
++++IG +PH ++ D R + +G V + +MK ++ N+G+ FV + N A A
Sbjct: 48 NKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 107
Query: 161 DKLNNTEFK-------------GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
++++ FK STSQ K +++ N+P+N L+++ G
Sbjct: 108 QEMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVK-SVYVKNLPKNVTQAQLKRLFEHHG 165
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/291 (49%), Positives = 207/291 (71%), Gaps = 12/291 (4%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + Y G+ +E DLR C+ +GE+ EVR+MK K++ ENKGFAFVTF ++A
Sbjct: 9 PRRARRYSWGVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 68
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
AI++L++ + KG+ +RCS SQAK+RLF+GN+P+ E+L ++ GPGV +E+ KD+
Sbjct: 69 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 128
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG------A 272
N S NRGF F+EY+NH CA+Y+RQK+++P+FK+ + TVSWA+P+ SS A
Sbjct: 129 HNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPA 188
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
+QVK +YVKNLP NV+++++K LFE HG +TK+V+PPAK G +++ GFVHFAERSSA+K
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRD-FGFVHFAERSSALK 247
Query: 333 ALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY--PPHIGY 381
A+K +EKYE+DGQ LE S+AKP +D+K S KP +Y PP+ GY
Sbjct: 248 AVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSFKPGGAPSYPLPPYGGY 295
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 202/316 (63%), Gaps = 13/316 (4%)
Query: 93 ELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN 152
ELLA PPHG+EV++G +P + ++ DL C+ GEV +V I + E +AFVTF
Sbjct: 120 ELLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFTT 176
Query: 153 VELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
E A KAI+ LN EFK KK+R S SQ K RLF+GNIP N E+L K+VSE GPG +
Sbjct: 177 KESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHL 236
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
EL+KD K+++ NRGFAF+EY+N CAE + + MT+ F+L TV WA + S +
Sbjct: 237 ELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQR---SSS 293
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
+VK+VYV+NLP NVT++QL++LF HG +TKVV+ KPGQ K GFVH+A+ SSAMK
Sbjct: 294 EEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMK 353
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK--SAGGSVSEKPSLLQNYPPHIGYGLAGGTYGA 390
A++ TEKY L+ + L SLA+P +D+K + G S + L N+ P GYG Y
Sbjct: 354 AIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYGYNPNMY-- 411
Query: 391 LGAGFGAAAFAQTTVW 406
GFG+ + Q ++
Sbjct: 412 ---GFGSMGYTQPVIY 424
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 224/391 (57%), Gaps = 80/391 (20%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIE 83
+E+VD +EDN EE++++ ++++ E+ ++ + E+ + D + E
Sbjct: 8 EERVDLEEDN----------YMEEIDDDVQDQLDEDGEDDAGDAHAEENVEEEYEDSKPE 57
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENK 143
+ EK KHA+LL+LPPHGSEV+IGG+P D E +LRD C++IGE+ E+R+MK KD+ E+K
Sbjct: 58 GK-EKDKHAQLLSLPPHGSEVFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESK 116
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203
GFAFV F++ E+A KA ++L + ++KGK +RCS S+ K RLFIGN+P+N ++ +K++
Sbjct: 117 GFAFVAFKSKEVARKATEELRSKDYKGKTLRCSISETKNRLFIGNVPKNLTEDEFRKIIE 176
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
EVGPG+ +EL+KD + + NRGFAFI Y+N+ CA+YSRQKM N NFKL + PTVSWAD
Sbjct: 177 EVGPGMEVLELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLDGHTPTVSWAD 236
Query: 264 PRNV--DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
P+ + D S A+ +AV R+ + +E G++ +VV
Sbjct: 237 PKGMPPDHSPAAAGQAV------RDTEK------YEIDGQLLEVV--------------- 269
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG-----GSVSEKPSLLQNYP 376
LAKPQAD+K G V+ P L Y
Sbjct: 270 -----------------------------LAKPQADKKPDGSYPYNAGVNPNPVPLPAY- 299
Query: 377 PHIGYGLAGGTYGALGAGFG-AAAFAQTTVW 406
G AG +G+LG GFG AA F Q ++
Sbjct: 300 ----SGFAGNPHGSLGTGFGVAAGFQQPVIY 326
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 183/279 (65%), Gaps = 22/279 (7%)
Query: 24 DEKVDFDEDNDPEETMEEEYEYE----------------EVEEEEEEEVIEEEVEEEVEE 67
D++VD DE+N EE M+++ E + VEE E EE E +++
Sbjct: 8 DDRVDLDEENYMEE-MDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQFP 66
Query: 68 EEEDADAGKSGD---MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQS 124
E E +D G D + DE+E++KH ELL+ PPHGSEV+IGG+P D S+ D+R+ C+
Sbjct: 67 EGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEP 126
Query: 125 IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRL 184
+G++ E++++K +++ E+KG+AFV ++ E+A KAID ++N EFKGK +RC S+ K+RL
Sbjct: 127 MGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRL 186
Query: 185 FIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244
FIGNIP+ W ++ +K V VGPGV ++L+KD +N S NRGFAF+ Y+N+ CA++SRQK
Sbjct: 187 FIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQK 246
Query: 245 MTNPNFKLGTNAPTVSWADPRNV--DSSGASQVKAVYVK 281
M++ FKL PTV+WADP+ S+ ASQ V+
Sbjct: 247 MSSVGFKLDGITPTVTWADPKTSPDQSAAASQFYRTAVQ 285
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 27/301 (8%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKG-KDSSENKGFAFVTFRNVELASKAID 161
++IG IP +E + R + +G V + ++K ++ S N+GFAFV + N A +
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQ 245
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSE-----VGPGVT-GVELV 215
K+++ FK I + + A P+ S D S+ V P + G E
Sbjct: 246 KMSSVGFKLDGITPTVTWAD--------PKT--SPDQSAAASQFYRTAVQPVLLYGTECW 295
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK--LGTNAPTVSWADPRNVDSSGAS 273
N A + + ++ N + +G AP V + G
Sbjct: 296 AVKSQHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGV-APIVEKLVENRLRWFGHV 354
Query: 274 Q---VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ VKA+YVKN+P NVT +QLK+LF HG +TKVV+PP K +++ GF+H+AERSSA
Sbjct: 355 ERRPVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD-FGFIHYAERSSA 413
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG-LAGGTYG 389
+KA+K TEKYE+DGQALE +AKPQA++K GG + P L N+ PH GYG +G YG
Sbjct: 414 LKAVKETEKYEIDGQALEVVIAKPQAEKKPDGG-YAYNPGLHPNHLPHPGYGNFSGNLYG 472
Query: 390 A 390
+
Sbjct: 473 S 473
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 93/198 (46%), Gaps = 23/198 (11%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
+FIG +PR+ +D++++ +G + ++L+KD + + ++G+AF+ Y + A+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMG-DIVEIKLIKD-RETGESKGYAFVGYKTKEVAQKAID 163
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
+ N FK T +S R +++ N+P+ T+D+ +K E G
Sbjct: 164 DIHNKEFKGKTLRCLLSETKHR------------LFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 304 KVVVPPAKP-GQEKNR-IGFVHFAERSSA--MKALKNTEKYELDGQALECSLAKPQA--D 357
+ + P Q +NR FV + + A + ++ ++LDG + A P+ D
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 358 QKSAGGS---VSEKPSLL 372
Q +A + +P LL
Sbjct: 272 QSAAASQFYRTAVQPVLL 289
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 169/265 (63%), Gaps = 7/265 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELA 156
PPHG+EV++GGIP A+E L+ F +++GEV V ++K ++E N+GF FV F+ A
Sbjct: 73 PPHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAA 132
Query: 157 SKAIDKLNN---TEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+ A++KL +F G+ +R + SQ+K++L++GNIPR+ + L+ + V GV +E
Sbjct: 133 TDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVVKGVEVIE 192
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
L+ + NNRGFAFIE++NH CA+ ++ ++ P + + + V++A+P+ D
Sbjct: 193 LLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPKGADQVPTQ 252
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
QVK+VYV NLP + + +LK+LFE G +TKVV+PP++P + GFVHF+ERS K
Sbjct: 253 QVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFSERSVVEKL 312
Query: 334 LKNTE---KYELDGQALECSLAKPQ 355
+++ E K LD LE +AKPQ
Sbjct: 313 VQDAEKGTKPSLDSNTLEVKMAKPQ 337
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 164/256 (64%), Gaps = 3/256 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+EV++GGI + +E +L+D +IG V +VRIMK + + ENKG+ FV+F N +A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
+ NN EFKGK +R S+ K ++FIGN+P+ + L ++++ G+T V+ + D NS
Sbjct: 172 QFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNS 231
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
S NRGFAFIEY ++ AE +R++ + PNFK+G TV+WADP + D + +QV+ +Y+
Sbjct: 232 SRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVLYI 291
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NLP + +++Q++KLFE +G I KV++P PGQ++ GFVHFA R A L
Sbjct: 292 RNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDT 351
Query: 341 EL--DGQALECSLAKP 354
+ G+ L S AKP
Sbjct: 352 PITYQGRPLSLSFAKP 367
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN--NRGFAFIEYHNHKC 237
A+ +F+G I RN E+LQ + S +G V+ V+ MK+ SN N+G+ F+ + N
Sbjct: 110 AENEVFVGGIARNTTEEELQDLFSTIG----NVKQVRIMKDRSNGENKGYGFVSFANKSN 165
Query: 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLF- 296
+ + + N FK +N+ + + +++ NLP+ + +DQL +
Sbjct: 166 CKEAVVQFNNKEFK------------GKNLRVKFSENKRKIFIGNLPKELKKDQLLLILA 213
Query: 297 EHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALK 335
+H IT V +NR F+ + + A KA K
Sbjct: 214 DHSDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAEKARK 253
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 134/181 (74%), Gaps = 6/181 (3%)
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVY 279
S N+G+ FIEY+N CAEY++QKM+ P FKL TNAPTVSWAD +N +++ SQVK++Y
Sbjct: 6 SGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQVKSLY 65
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
VKNLP+ VTQ+QLKKLFEH G ITKVV+PPAK G E NR GFVHF ERS MKALKNTE+
Sbjct: 66 VKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHE-NRYGFVHFKERSMVMKALKNTER 124
Query: 340 YELDGQALECSLAKPQADQKSAGGS--VSEKPSLLQNYPPHIGYGLAGGTYGALGAGFGA 397
YELDGQ L+CS AKP AD+K GS ++ L +Y P +GYGLA G Y LG G
Sbjct: 125 YELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYGLA-GAYNPLGKGLAG 182
Query: 398 A 398
A
Sbjct: 183 A 183
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ +P ++ L+ + +GE+T+V I K EN+ + FV F+ + KA+
Sbjct: 64 LYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR-YGFVHFKERSMVMKALKNT 122
Query: 164 NNTEFKGKKIRCSTSQ 179
E G+ + CS ++
Sbjct: 123 ERYELDGQLLDCSPAK 138
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------------KGKKIRCSTSQ 179
MK S NKG+ F+ + N A A K++ EF K STSQ
Sbjct: 1 MKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQ 60
Query: 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
K L++ N+P+ E L+K+ VG +T V ++ K+ NR + F+ +
Sbjct: 61 VK-SLYVKNLPKTVTQEQLKKLFEHVG-EITKV-VIPPAKSGHENR-YGFVHF 109
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 166/267 (62%), Gaps = 3/267 (1%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +EV++GG+ + +E DL+ S+G V ++R+MK K + E+KG+AF+TF +
Sbjct: 43 PMAENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQ 102
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
A++K++N E KGK +R S+ + +LF+GN+P+ + E L +++++ G+T ++ + D
Sbjct: 103 MAVEKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMD 162
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVK 276
N + NRGFAF+E+ ++ A+ +R++ +P+F++G++ TV+WADP + D V+
Sbjct: 163 PDNPTRNRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDEDVMKNVR 222
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL-- 334
+YV+NLP + LKK+FE G I KV++P PGQ++ GFVHF R +A +AL
Sbjct: 223 VLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAEEALVR 282
Query: 335 KNTEKYELDGQALECSLAKPQADQKSA 361
N + G+ L S AKP ++ A
Sbjct: 283 HNNQPITYQGRDLIVSFAKPMDKKQRA 309
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 156/264 (59%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L + G + ++R+M S N+G+AF+TF N + A
Sbjct: 163 PASGCEVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAH 222
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
++ +L+N E KGK I + S +RLF+GNIP+N G E+L + S+ PG+T V +
Sbjct: 223 NSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHAPGLTEVIIYS 282
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ + V WADP+ D ++V
Sbjct: 283 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDQETMAKV 342
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL +VT+++LK+LFE HGR+ +V ++ FVHF ER A+KA+
Sbjct: 343 KVLYVRNLTADVTEERLKELFEQHGRVERV--------KKIKDYAFVHFEERDHAVKAMN 394
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+ +L G +E SLAKP +D+K
Sbjct: 395 QLQGKDLCGAPMEVSLAKPPSDKK 418
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 121/169 (71%), Gaps = 14/169 (8%)
Query: 245 MTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK 304
M++P FKL +NAPTVSWADP+N DS SQVK+VYVKNLP+NVTQ QLK+LFEHHG I K
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK 60
Query: 305 VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA----DQKS 360
VV+PP++ G NR GFVHF +RS AM+AL+NTE+YELDGQ L+CSLAKP A D +
Sbjct: 61 VVLPPSR-GGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV 119
Query: 361 AGGSVSEKPSLLQNYPPHIGYGLAG--GTYGALGAGFGAAAFAQTTVWS 407
S + P LL +YPP +GYG+ G YGA A+ AQ +++
Sbjct: 120 PLPSSNGAP-LLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYA 161
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 190/353 (53%), Gaps = 26/353 (7%)
Query: 22 GSDEKVDFDEDNDPEETMEEEYEYEEVEEE--EEEEVIEEEVEEEVEEEEEDADAGKSGD 79
G VD D +P+ +E E+ ++ E+E E+ + +E EE AG S D
Sbjct: 34 GGSGGVDPPADGEPKSEGDEPKPQEQAPDDVREQELATAEDERQRNQEHEEQQGAGDSED 93
Query: 80 MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
++LPPHG+EV+I +P +A++ +R FC+ GEV +RI K ++S
Sbjct: 94 P--------------MSLPPHGTEVFISKVPREATDAQVRAFCEMAGEVFALRIPKDRES 139
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNT---EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE 196
+ NKG+ F F+ E A KA+ L EF G+++ S K +L+IG +PR+ E
Sbjct: 140 NTNKGYCFCVFKARESAEKAMTILEGREVKEFPGRRVNVVPSIVKNKLYIGQMPRDITRE 199
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256
+L+ ++ G+ +EL+ D K ++ RGF FI ++N A + +K++ P F+L +
Sbjct: 200 ELEVLLKAEVVGLEKIELMMD-KETNQARGFGFIAFYNSAAATLALRKLSRPEFRLRGHQ 258
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV--PPAKPGQ 314
V WADP+ D G +VK++YV NLP T++ L+ +F +G + +V + P P +
Sbjct: 259 VQVMWADPKR-DEIGTEKVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLLYMPDDPTK 317
Query: 315 EKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQADQKSAGGSV 365
+N F+++ +RSSA++A+ E K+ + + L +AKPQA + G V
Sbjct: 318 LRNYT-FINYTDRSSALRAVSEAENKKHIMTDKELIVHMAKPQAQRDDGMGMV 369
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 157/261 (60%), Gaps = 10/261 (3%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L + G++ ++R+M S N+G+AF+TF N E A ++
Sbjct: 159 GCEVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNSV 218
Query: 161 DKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+L+N E KGK I + S +RLF+GNIP+N G E+L + S+ PG+T V +
Sbjct: 219 RELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHAPGLTEVIIYSSPD 278
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGF F+EY +HK A ++++++ K+ + V WADP+ D ++VK +
Sbjct: 279 DKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDEETMAKVKVL 338
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
YV+NL +VT+++LK+LFE HGR+ +V ++ FVHF ER A++A++ +
Sbjct: 339 YVRNLTTDVTEEKLKELFEAHGRVERV--------KKIKDYAFVHFEERDHAVRAMEQLQ 390
Query: 339 KYELDGQALECSLAKPQADQK 359
+L G +E SLAKP +D+K
Sbjct: 391 GKDLCGAPMEVSLAKPPSDKK 411
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G +P+ E +L + G++ ++R+M S N+G+AFVT+ E A
Sbjct: 155 PTAGCEVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAE 214
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A +L+ E K GK I+ + S RLFIGNIP++ G ED+ + ++ G+T V +
Sbjct: 215 RATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYS 274
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ PN+K+ V WADP+ D S+V
Sbjct: 275 SPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQEEPDDETMSKV 334
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL + VT+++LK+ FE HG + +V ++ F+HF +R A+KAL+
Sbjct: 335 KVLYVRNLTQEVTENRLKETFEVHGSVERV--------KKIKDYAFIHFNDRGCALKALE 386
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
LDG LE SLAKP +D+K
Sbjct: 387 ELNGSNLDGATLEVSLAKPPSDKK 410
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 154/264 (58%), Gaps = 3/264 (1%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV++GG+ D +E DL ++GE+ E+R+MK + E+KG+AFV F + + A
Sbjct: 397 PPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAK 456
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVK 216
A+ +++ KG+K+ S LF+G++ ++W +DL + + + GVT + L+K
Sbjct: 457 LAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMK 516
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA-SQV 275
D N + NRGFAF+E+ +H+ A + K+ P F+L V WA+P N S S+V
Sbjct: 517 DTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPLNEPSEEVMSKV 576
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K++YV NLP +V D ++ LF G I ++V+ ++ FV++ ERS+A+ A+
Sbjct: 577 KSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAID 636
Query: 336 NTEKYEL-DGQALECSLAKPQADQ 358
Y++ D L+ +LAKP +Q
Sbjct: 637 ARHGYKVDDDHVLDVTLAKPVTEQ 660
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/165 (55%), Positives = 122/165 (73%), Gaps = 6/165 (3%)
Query: 245 MTNPNFKLGTNAPTVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
M++ +FKL N PTV+WADP+N D S +SQVKA+YVKN+P NVT DQLK+LF HG +T
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT 60
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGG 363
KVV+PP K G +++ GF+HFAERSSA+KA+K TEKYE+DGQ LE LAKPQA+++
Sbjct: 61 KVVMPPGKIGGKRD-FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRP--D 117
Query: 364 SVSEKPSLLQNYPPHIGYG-LAGGTYGALGAGFGAA-AFAQTTVW 406
+ + P + N+ PH GYG +G YG+LG G+GAA A+ Q ++
Sbjct: 118 AYAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYGAAPAYQQPMMY 162
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 154/264 (58%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LN+ E KGKKI + S +RLF+GNIP+N +DL + ++ PG+T V +
Sbjct: 219 QAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYS 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YVKNL ++ ++++LK+ FE +G I +V ++ FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 157 SKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +LN+ E KGKKI + S +RLF+GNIP+N ++L + S+ PG+ V +
Sbjct: 222 INAVRQLNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++VT+D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 156/264 (59%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +G EV+ G IP D E +L + G++ ++R+M + N+G+AFVTF + + AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +LN+ E + GKKI + S +RLF+GNIP+N ++L + ++ PG+ V +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL ++ ++++LK+ FE GR+ +V ++ FVHF +R +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+ + E+ G +E SLAKP +D+K
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +LN+ E + GKKI + S +RLF+GNIP+N ++L + S+ PG+ V +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 154/264 (58%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G + ++R+M + +N+G+AFVTF + E A
Sbjct: 173 PGSGCEVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ + S++ G+T V +
Sbjct: 233 NAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAAGLTKVIIYS 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D+ S+V
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQEEPDAETMSKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL ++ ++++LK+ FE +G+I +V ++ F+HF +R +A+KAL
Sbjct: 353 KVLYVRNLTQDCSEEKLKESFEVYGKIDRV--------KKIKDYAFIHFEDRDNAIKALN 404
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L G +E SLAKP +D+K
Sbjct: 405 ELNGKDLAGACIEVSLAKPPSDKK 428
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +LN+ E + GKKI + S +RLF+GNIP+N ++L + S+ PG+ V +
Sbjct: 261 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +LN+ E + GKKI + S +RLF+GNIP+N ++L + S+ PG+ V +
Sbjct: 253 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 312
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 154/264 (58%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ + ++ G+T V +
Sbjct: 219 QAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YVKNL ++ ++++LK++FE +G I +V ++ FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKEVFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 11/271 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE---------VRIMKGKDSSENKGFAFV 148
PP GSEV++GG+ DA+E D+R+ IG++ E +R+M+ + +KG+AFV
Sbjct: 253 PPKGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFV 312
Query: 149 TFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-P 207
+ A A D+L+ G+ + SQ LF+G+I ++W E L+ + E G
Sbjct: 313 RYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIR 372
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
GV + D N + NRGF FIE+ +H A + KMT +F+L V WA+P N
Sbjct: 373 GVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQKVRVDWAEPLNE 432
Query: 268 DSSGA-SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
SQVK++YV NLP V + + LF +G+I ++V+ P + FV++ E
Sbjct: 433 PGEDVMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEE 492
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKPQAD 357
R++A+KA+ +E+ G+ L+ +LAKP D
Sbjct: 493 RANALKAIDGKHGFEVQGRTLQVTLAKPVDD 523
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 154/265 (58%), Gaps = 11/265 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L + G++ ++R+M + N+G+AF+TF + A
Sbjct: 169 PAAGCEVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQ 228
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A++ +N E KGK I + S +RLF+GNIP+N G ++L + ++ PG+T V +
Sbjct: 229 EAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHAPGLTDVIIYT 288
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ DS S+V
Sbjct: 289 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDSETMSKV 348
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
K +YV+NL + VT+++LK++FE GR+ +V ++ FVHF +R A++AL
Sbjct: 349 KVLYVRNLTQEVTEEKLKEVFEEFGGRVERV--------KKIRDYAFVHFEDREDALRAL 400
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E G +E SLAKP +D+K
Sbjct: 401 EKNNNREAGGAPMEVSLAKPPSDKK 425
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 152/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N + A
Sbjct: 160 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQ 219
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ ++ G+T V +
Sbjct: 220 QAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 279
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+V
Sbjct: 280 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQEEPDEQTMSKV 339
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YV+NL ++ ++++LK+ FE +G+I +V ++ F+HF ER A+KA++
Sbjct: 340 RVLYVRNLTQDCSEEKLKECFEQYGKIERV--------KKIKDYAFIHFEERECAVKAMR 391
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 392 ELNGKEMGGSHIEVSLAKPPSDKK 415
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 154/264 (58%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M S N+G+AF+TF N E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ + ++ G+T V +
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 275
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 276 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 335
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YV+NL ++ ++++LK+ FE +G+I +V ++ F+HF +R +A+KA+
Sbjct: 336 RVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMN 387
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 388 ELNGKEMGGSHIEVSLAKPPSDKK 411
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +G EV+ G IP D E +L + G++ ++R+M + N+G+AFVTF + + AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +LNN E K G ++ + S RLF+GNIP++ G E++ ++ G+ V +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL ++ ++++LK+ FE GR+ +V ++ FVHF +R +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+ + E+ G +E SLAKP +D+K
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ + ++ G+T V +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YVKNL ++ ++++LK+ FE +G I +V ++ FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 154/266 (57%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A PP G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF + E
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ NN E + GK+I S A RLF+G+IP++ E + + S+V G++ V L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
++ S NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F +G + +V ++ F+HF ER A+KA
Sbjct: 336 KVKVLFVRNLANSVTEEILEKAFSEYGNLERV--------KKLKDYAFIHFEERDGAVKA 387
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L+ EL+G+ +E AKP DQK
Sbjct: 388 LEELNGKELEGEPIEIVFAKP-PDQK 412
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ + ++ G+T V +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YVKNL ++ ++++LK+ FE +G I +V ++ FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 152/262 (58%), Gaps = 10/262 (3%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+G EV+ G IP D E +L + G + ++R+M ++ N+G+AFVTF E A +A
Sbjct: 173 NGCEVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEA 232
Query: 160 IDKLNNTEFKG-KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+++LN+ E KG + ++ + S RLF+GNIP++ G+ ++ + S+V G+ V +
Sbjct: 233 VNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGLAEVIIYSSP 292
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D+ S+VK
Sbjct: 293 DDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEEPDNDTMSRVKV 352
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL + T+++LK+ FE HG I +V ++ FVHF ER A++A+
Sbjct: 353 LYVRNLTQEFTEEKLKEAFEAHGPIQRV--------KKIKDYAFVHFEERDDAVQAMDAL 404
Query: 338 EKYELDGQALECSLAKPQADQK 359
+ L G LE SLAKP +D+K
Sbjct: 405 NGHTLYGANLEVSLAKPPSDRK 426
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M S N+G+AF+TF N E A
Sbjct: 150 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 209
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ ++ G+T V +
Sbjct: 210 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 269
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A ++++++ K+ V WADP+ D S+V
Sbjct: 270 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 329
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YV+NL ++ ++++LK+ FE +G+I +V ++ F+HF +R +A++A+
Sbjct: 330 RVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVRAMN 381
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
E+ G +E SLAKP +D+K
Sbjct: 382 ELNGKEMGGSHIEVSLAKPPSDKK 405
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 153/264 (57%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF + E A
Sbjct: 162 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 221
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK+I S A RLF+G+IP++ E + + S+V G++ V L
Sbjct: 222 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 281
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
++ S NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 282 QPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMAKV 341
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL +VT++ L+K F +G + +V ++ F+HF ER A+KAL+
Sbjct: 342 KVLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALE 393
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 394 EMNGKELEGEPIEIVFAKP-PDQK 416
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++VT+D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 218 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 277
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 278 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 337
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 338 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 397
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++VT+D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 398 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 449
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 450 RGLNGKEVGASNIEVSLAKPPSDKK 474
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 152/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G + ++R+M + N+G+AFVTF + A
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ KL+N E K GK ++ + S RLF+GNIP++ G E++ + ++ G+ V +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYS 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+V
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL + +++++LK+ FE +G++ +V ++ F+HF +R +A+KA++
Sbjct: 353 KVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKAME 404
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+ E+ G +E SLAKP +D+K
Sbjct: 405 ELDGKEMGGSNIEVSLAKPPSDKK 428
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 343
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEHFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 197 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 256
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 257 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 316
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 317 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 376
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 377 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 428
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 429 RGLNGKEIGASNIEVSLAKPPSDKK 453
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N + A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++VT+++LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 343
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 149/266 (56%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E
Sbjct: 155 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 214
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ NN E + GK I S A RLF+G+IP++ E + + ++V G+ V L
Sbjct: 215 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 274
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 275 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 334
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL VT++ L+K F HG++ +V ++ F+HF ER SA+KA
Sbjct: 335 KVKVLFVRNLASTVTEEILEKTFSQHGKLERV--------KKLKDYAFIHFEERESAVKA 386
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L + +L+G+ +E AKP DQK
Sbjct: 387 LTDLNGKDLEGEHIEIVFAKP-PDQK 411
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 152/263 (57%), Gaps = 10/263 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 229 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 288
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 289 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 348
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 349 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 408
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 409 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 460
Query: 335 KNTEKYELDGQALECSLAKPQAD 357
+ E+ +E SLAKP +D
Sbjct: 461 RGLNGKEIGASNIEVSLAKPPSD 483
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N + A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++VT+++LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 299
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 300 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 351
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 352 RGLNGKEIGASNIEVSLAKPPSDKK 376
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 154/265 (58%), Gaps = 10/265 (3%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P +G EV+ G IP D E +L ++ G + ++R+M + N+G+AFVTF N + A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
A+ +L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V +
Sbjct: 222 INAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ E+ +E SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 150/264 (56%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E+++G IP D E +L + G + ++R+M SS N+G+AF+TF + E A
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G++ V L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL+
Sbjct: 338 KVLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALE 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 390 EMNGKELEGEPIEIVFAKP-PDQK 412
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 157/291 (53%), Gaps = 18/291 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF + E A
Sbjct: 158 PTIGTEIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN+E + GK I S A RLF+G+IP++ E + + S+V G+ V L
Sbjct: 218 QAVKLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER SA+KAL
Sbjct: 338 KVLFVRNLASAVTEELLEKTFSQFGKLERV--------KKLKDYAFIHFEERDSAVKALG 389
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI 379
+ +L+G+ +E AKP DQK + + Q Y PPH+
Sbjct: 390 DLNGKDLEGEHIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHM 439
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 151/264 (57%), Gaps = 10/264 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +G EV+ G IP D E +L + G++ ++R+M + N+G+AFVTF + + AS
Sbjct: 126 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 185
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +L+N E K GK ++ + S RLF+GNIP++ G E++ ++ G+ V +
Sbjct: 186 NAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLMEVIIYS 245
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGF F+EY +HK A +++++ K+ V WADP+ D S+V
Sbjct: 246 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 305
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL ++ ++++LK+ FE G++ +V ++ F+HF +R A+ A+K
Sbjct: 306 KVLYVRNLTQDTSEEKLKESFEQFGKVERV--------KKIKDYAFIHFEDRDHAVNAMK 357
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+ +L G LE SLAKP +D+K
Sbjct: 358 ELDGKDLGGSNLEVSLAKPPSDKK 381
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 147/261 (56%), Gaps = 11/261 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S+V+IG +P D E +L + G + + R+M S KGFAF TF N + A A+
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
KL+N E + GK++ S A RLF+G+IP+ +++ + S+V G+ V +
Sbjct: 212 KLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ 271
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADPR-NVDSSGASQVKAV 278
NRGFAF+EY +H+ A +R+++ + K+ G TV WADP+ D +VK V
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDDAMKKVKVV 331
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
Y++NL ++T+++LK+ + +G + +V ++ FVHF ER A+KA++ T+
Sbjct: 332 YLRNLSPSITEEKLKEEYSQYGAVDRV--------KKLKDYAFVHFTERDHALKAIEETD 383
Query: 339 KYELDGQALECSLAKPQADQK 359
E+DG +E SLAKPQ K
Sbjct: 384 GKEMDGLKIEASLAKPQPGNK 404
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 151/266 (56%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E
Sbjct: 111 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 170
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
AS+A++ NN E + GK I S A RLF+G+IP++ E + + ++V G+ V L
Sbjct: 171 ASEAVNLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKVTEGLNDVIL 230
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ NA TV WADP DS +
Sbjct: 231 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWADPIEEPDSEVMA 290
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F GR+ +V ++ F+HF ER SA+KA
Sbjct: 291 KVKVLFVRNLANSVTEEILEKSFGQFGRLERV--------KKLKDYAFIHFDERDSAVKA 342
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L +L+G+ ++ AKP DQK
Sbjct: 343 LAEMNGKDLEGEHIDIVFAKP-PDQK 367
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 147/261 (56%), Gaps = 10/261 (3%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF N E
Sbjct: 61 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 120
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +N E + GK I S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 121 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 180
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D +
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 240
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL VT++ L+K F G++ +V ++ FVHF ER +A++A
Sbjct: 241 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 292
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ EL+G+ +E LAKP
Sbjct: 293 MDEMNGTELEGEEIEIVLAKP 313
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 147/261 (56%), Gaps = 10/261 (3%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF N E
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +N E + GK I S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 118 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D +
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL VT++ L+K F G++ +V ++ FVHF ER +A++A
Sbjct: 238 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 289
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ EL+G+ +E LAKP
Sbjct: 290 MDEMNGTELEGEEIEIVLAKP 310
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 18/293 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ NN E + GK I S A RLF+G+IP++ + + + ++V G+ V L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHIGY 381
+L+G+ +E AKP DQK + + Q Y PPH+ +
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHH 442
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 158/295 (53%), Gaps = 34/295 (11%)
Query: 93 ELLALPPHGSEVYIGGIPHDASEHDLRDFC----QSIGEVTEVRIMKGKDSSENKGFAFV 148
+LL P H E+++GGIP ASE D+R FC + + + V+++ + +N+G+AFV
Sbjct: 2 DLLKKPAHSCELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFV 61
Query: 149 TFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
+ + E A+ A +KLN + KKIR S Q K+R+FIGN+ R ++ + + + G G
Sbjct: 62 AYPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCG 121
Query: 209 VTGVELVKDMKNS-----SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD 263
GVE ++ KN S +GF F +++N CAE + + ++ LG T WAD
Sbjct: 122 --GVEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFLGRPV-TARWAD 178
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQD-----QLKKLFEHHGRITKVVVPPAKPG----Q 314
P+ D S + VK+VYV NLP ++ D +LK LF +G + V V +PG
Sbjct: 179 PKLPDPS--TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASAS 236
Query: 315 EKNRIGFVHFAERSSAMKALKNTEK-----------YELDGQALECSLAKPQADQ 358
K FVH+A R SA+ A + ++ E+DG AL+ ++AKP DQ
Sbjct: 237 AKRNFAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAKPMKDQ 291
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 149/264 (56%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF N E A
Sbjct: 169 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQ 228
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 229 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 288
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 289 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 348
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL +VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 349 KVLFVRNLANSVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 400
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 401 GMNGKELEGENIEIVFAKP-PDQK 423
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 155/288 (53%), Gaps = 11/288 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGL 383
+L+G+ +E AKP DQK + + Q Y + YGL
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 436
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 155/288 (53%), Gaps = 11/288 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGL 383
+L+G+ +E AKP DQK + + Q Y + YGL
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 436
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 147/261 (56%), Gaps = 10/261 (3%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF N E
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +N E + GK I S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 118 AQEAVKLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLLDVIL 177
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D +
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL VT++ L+K F G++ +V ++ FVHF ER +A++A
Sbjct: 238 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 289
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ EL+G+ +E LAKP
Sbjct: 290 MDEMNGAELEGEEIEIVLAKP 310
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 148/264 (56%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ + NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQK 314
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 154/287 (53%), Gaps = 11/287 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 305 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 364
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 365 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 424
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 425 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 484
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 485 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAME 536
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
EL+G+ +E AKP DQK + + Q Y + YG
Sbjct: 537 EMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDEYYYYG 582
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 154/287 (53%), Gaps = 11/287 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 233 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAME 404
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
EL+G+ +E AKP DQK + + Q Y + YG
Sbjct: 405 EMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDEYYYYG 450
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 148/264 (56%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ + NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQK 314
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 10/256 (3%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E++IG IP D E +L + G V E+R+M S N+G+AFV + + A K++
Sbjct: 31 GCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKKSV 90
Query: 161 DKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
LN E KG+ I S RLF+G IP+ E++++ + +V GV + +
Sbjct: 91 KLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKVTDGVADIIMYPAAS 150
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ S NRGFAF+EY +H+ A +R+K+ N +L + V WA+P VD + VK +
Sbjct: 151 DKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDWAEPELEVDEETMATVKIL 210
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
YV+NL T+ QL K F HH + +V ++ FVHF RS A+ A+K
Sbjct: 211 YVRNLMLTTTEAQLNKAFSHHAPVERV--------KKIRDYAFVHFNSRSGALTAMKAMN 262
Query: 339 KYELDGQALECSLAKP 354
LD +E +LAKP
Sbjct: 263 GSVLDDAVIEVTLAKP 278
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 222 EAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 281
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D S+V
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMSKV 341
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA+
Sbjct: 342 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMD 393
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 394 EMNGKELEGENIEIVFAKP-PDQK 416
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 25/307 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ NN E + GK I S A RLF+G+IP++ + + + ++V G+ V L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI-------GY 381
+L+G+ +E AKP DQK + + Q Y PPH+ G
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHQPTRARGR 449
Query: 382 GLAGGTY 388
G G +Y
Sbjct: 450 GARGYSY 456
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 148/266 (55%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+ V L
Sbjct: 216 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVIL 275
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 276 YLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMA 335
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F G++ +V ++ F+HF ER A+KA
Sbjct: 336 KVKVLFVRNLASSVTEELLEKAFSQFGKLERV--------KKLKDYAFIHFEERDGAVKA 387
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L + +L+G+ +E AKP DQK
Sbjct: 388 LADLNGKDLEGEHIEIVFAKP-PDQK 412
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E
Sbjct: 167 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 226
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
AS+A++ NN E + GK I S A RLF+G+IP++ E + + ++V G+ V L
Sbjct: 227 ASEAVNLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 286
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 287 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA 346
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F G++ +V ++ FVHF ER +A+KA
Sbjct: 347 KVKVLFVRNLANSVTEEILEKSFSQFGKLERV--------KKLKDYAFVHFDERDAAVKA 398
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L L+G+ ++ AKP DQK
Sbjct: 399 LAQMNGKVLEGEHIDIVFAKP-PDQK 423
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 152/270 (56%), Gaps = 19/270 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G + ++R+M + N+G+AFVTF + A
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG------PGVT 210
+A+ KL+N E K GK ++ + S RLF+GNIP++ G E+ ++ E G G+
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE---ILEEFGKLTGYTAGLV 289
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDS 269
V + + NRGF F+EY +HK A +++++ K+ V WADP+ D
Sbjct: 290 EVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE 349
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
S+VK +YV+NL + +++++LK+ FE +G++ +V ++ F+HF +R +
Sbjct: 350 QTMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDREN 401
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQK 359
A+KA++ + E+ G +E SLAKP +D+K
Sbjct: 402 AVKAMEELDGKEMGGSNIEVSLAKPPSDKK 431
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKP 354
+L+G+ +E AKP
Sbjct: 390 EMNGKDLEGENIEIVFAKP 408
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 334
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 335 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 386
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 387 EMNGKDLEGENIEIVFAKP-PDQK 409
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 405 EMNGKDLEGENIEIVFAKP-PDQK 427
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L G + ++R+M S +N+G+AF+TF + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
EL+G+ +E LAKP
Sbjct: 393 EMNGKELEGEEIEIVLAKP 411
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 373
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 374 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 425
Query: 336 NTEKYELDGQALECSLAKP 354
+L+G+ +E AKP
Sbjct: 426 EMNGKDLEGENIEIVFAKP 444
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 198 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 257
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 258 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 317
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 318 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 377
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 378 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 429
Query: 336 NTEKYELDGQALECSLAKP 354
+L+G+ +E AKP
Sbjct: 430 EMNGKDLEGENIEIVFAKP 448
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 196/369 (53%), Gaps = 39/369 (10%)
Query: 22 GSDEKVDFDEDNDPEETMEE----EYEYEEVEEEEEEEVIEEE--------------VEE 63
G DE++D EDNDPE +E EY+ +E+E+E+ +EV++ E VEE
Sbjct: 124 GKDERLDL-EDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDGEGEPEDNVGDEEGDMVEE 182
Query: 64 EVEEEEEDADAGKSGDMQ---------IEDEDEKKKHAELLALPPHGS-EVYIGGIPHDA 113
+VE+ +ED + G+ D Q + D DE + H + EV++GG+ D
Sbjct: 183 DVEDAQEDLE-GEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
E DL+ ++GEVTEVR+M + +NKGFAF+ F VE A +A+ +L N GK+
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEY 232
+ SQ LF+GNI + W + L++ + G V + LV+D N +NRGFAF+E+
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 233 HNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVKAVYVKNLPRNVTQ 289
+ A + +++ + G + P VS+AD +D +QVK V+V +LP + +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVDRPAKVSFAD-SFIDPGDEIMAQVKTVFVDSLPASWDE 420
Query: 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALKNTEKYELDGQA 346
+ ++ L + +G I K+ + P ++ GFV F +A+ K++ N+E E D +A
Sbjct: 421 EFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELGEGDNKA 480
Query: 347 -LECSLAKP 354
+ L++P
Sbjct: 481 KVRARLSRP 489
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 154/264 (58%), Gaps = 11/264 (4%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P GSEV+ G IP D E +L + G++ ++R+M + N+G+ F+TF + A +
Sbjct: 158 PSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALE 217
Query: 159 AIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
A+ +L+N + K GK I+ + S A RLF+GNIP++ +++ + S+ +T V + +
Sbjct: 218 AVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRS 277
Query: 218 M-KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
K + NRGFAF+EY +HK A +++K+++ K+ V WADP + DS S+V
Sbjct: 278 AEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVIVDWADPIDDPDSDTMSKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL +VT+D LK+ F +G++ +V ++ GF+HF ER A+KA++
Sbjct: 338 KVLYVRNLTSDVTEDTLKEKFGEYGKVERV--------KKIKDYGFIHFEERDDAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L +E SLAKP ++ K
Sbjct: 390 GMNGQKLGKLEMEVSLAKPPSENK 413
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 405 EMNGKDLEGENIEIVFAKP-PDQK 427
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 130 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 189
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 190 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 249
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 309
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 310 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 361
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 362 EMNGKDLEGENIEIVFAKP-PDQK 384
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 334
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 335 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 386
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 387 EMNGKDLEGENIEIVFAKP-PDQK 409
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 196/369 (53%), Gaps = 39/369 (10%)
Query: 22 GSDEKVDFDEDNDPEETMEE----EYEYEEVEEEEEEEVIE--------------EEVEE 63
G DE++D EDNDPE +E EY+ +E+E+E+ +EV++ + VEE
Sbjct: 124 GKDERLDL-EDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDXGGEPEDNVGDEEGDMVEE 182
Query: 64 EVEEEEEDADAGKSGDMQ---------IEDEDEKKKHAELLALPPHGS-EVYIGGIPHDA 113
+VE+ +ED + G+ D Q + D DE + H + EV++GG+ D
Sbjct: 183 DVEDAQEDLE-GEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
E DL+ ++GEVTEVR+M + +NKGFAF+ F VE A +A+ +L N GK+
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEY 232
+ SQ LF+GNI + W + L++ + G V + LV+D N +NRGFAF+E+
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 233 HNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVKAVYVKNLPRNVTQ 289
+ A + +++ + G + P VS+AD +D +QVK V+V +LP + +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVDRPAKVSFAD-SFIDPGDEIMAQVKTVFVDSLPASWDE 420
Query: 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALKNTEKYELDGQA 346
+ ++ L + +G I K+ + P ++ GFV F +A+ K++ N+E E D +A
Sbjct: 421 EFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSELGEGDNKA 480
Query: 347 -LECSLAKP 354
+ L++P
Sbjct: 481 KVRARLSRP 489
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 373
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 374 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 425
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 426 EMNGKDLEGENIEIVFAKP-PDQK 448
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQK 314
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 260 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 319
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 320 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 379
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 380 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 439
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 440 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 491
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 492 EMNGKDLEGENIEIVFAKP-PDQK 514
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQK 322
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQK 314
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQK 322
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 231 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 290
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 291 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 350
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 351 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 410
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 411 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 462
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 463 EMNGKDLEGENIEIVFAKP-PDQK 485
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 209 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 268
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 269 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 328
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 329 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 388
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 389 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 440
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 441 EMNGKDLEGENIEIVFAKP-PDQK 463
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 157/307 (51%), Gaps = 25/307 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ NN E + GK I S A RLF+G+IP++ + + + ++V G+ V L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+ Y +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY-------PPHI-------GY 381
+L+G+ +E AKP DQK + + Q Y PPH+ G
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHQPTRARGR 449
Query: 382 GLAGGTY 388
G G +Y
Sbjct: 450 GARGYSY 456
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 14/262 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G +P D +E +L + +G + E+R+M + S N+G+AFVTF + E A
Sbjct: 80 PPKGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFNGS-NRGYAFVTFCDKEQAK 138
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A +LN E + G+ I S RL++ IPR+ ED++ ++ + GV V L
Sbjct: 139 RACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYP 198
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ S NRGFAFIEY +H+ A +R+K+ L N TV WA+P R+VD +QV
Sbjct: 199 SAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMAQV 258
Query: 276 KAVYVKNLPRNVTQDQLKKLFEH---HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
K +YV+NL + T++ L+++ E G + +V ++ FVHF+ R A++
Sbjct: 259 KKLYVRNLMMHTTEEHLREVVEAISGTGTVERV--------KKIRDYAFVHFSRREDAIR 310
Query: 333 ALKNTEKYELDGQALECSLAKP 354
+ +LDG +E LAKP
Sbjct: 311 VQEALNGQDLDGSVVEVKLAKP 332
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 202 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 261
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 262 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 321
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 322 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 381
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 382 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 433
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 434 EMNGKDLEGENIEIVFAKP-PDQK 456
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M SS N+G+AFVTF E A
Sbjct: 165 PTVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQ 224
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+ V L
Sbjct: 225 EAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKVTDGLNDVILYH 284
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+E+ +HK A +R+++ + K+ TV WADP + D ++V
Sbjct: 285 QPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIEDPDPEVMAKV 344
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL +VT++ L+K F G++ +V ++ F+HF ER A+KAL
Sbjct: 345 KVLFVRNLANSVTEEILEKSFSAFGKLERV--------KKLKDYAFIHFEEREGAVKALD 396
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 397 EMNGKELEGEPIEIVFAKP-PDQK 419
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L +S G + ++R+M S +N+G+AF+T+ N + A
Sbjct: 161 PGSGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L
Sbjct: 221 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+ L VT++ L+K F G++ +V ++ FVHF ER +A+KA++
Sbjct: 341 KVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVKAME 392
Query: 336 NTEKYELDGQALECSLAKP 354
EL G+ +E LAKP
Sbjct: 393 EMNGKELGGEEIEIVLAKP 411
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 93 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 152
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 153 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 212
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 213 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 272
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 273 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 324
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 325 EMNGKDLEGENIEIVFAKP-PDQK 347
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 57/311 (18%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M S N+G+AF+TF N E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 158 KAIDKLNNTEFK------------------------------------------------ 169
+A+ +L+N E K
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRK 275
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GKKI + S +RLF+GNIP+N +DL + ++ PG+T V + + NRGF F
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCF 335
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A ++++++ K+ V WADP+ D S+V+ +YV+NL ++ +
Sbjct: 336 LEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCS 395
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
+++LK+ FE +G+I +V ++ F+HF +R +A+KA+ E+ G +E
Sbjct: 396 EEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIE 447
Query: 349 CSLAKPQADQK 359
SLAKP +D+K
Sbjct: 448 VSLAKPPSDKK 458
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NR F F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFVT+ + A
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVTYTHKHEAK 130
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 250
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A++A
Sbjct: 251 KILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVRA 302
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSA-GGSVSEKPSLLQNYP-PHIGYGLA- 384
+ + EL+G LE +LAKP QK+A GG+ SE NY P Y LA
Sbjct: 303 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEVTPQQPNYVYPCDPYTLAY 362
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 363 YGYPYSAL 370
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 147/266 (55%), Gaps = 11/266 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AF+TF E
Sbjct: 156 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 215
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 216 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 275
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D +
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 335
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+NL +VT++ L+K F G + +V ++ FVHF +R A+KA
Sbjct: 336 KVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKA 387
Query: 334 LKNTEKYELDGQALECSLAKPQADQK 359
L EL+G+ +E AKP DQK
Sbjct: 388 LTEMNGKELEGEHIEIVFAKP-PDQK 412
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L +S G + ++R+M S +N+G+AF+T+ N + A
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF ER +A++A+
Sbjct: 339 KVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMD 390
Query: 336 NTEKYELDGQALECSLAKP 354
E+ G+ +E LAKP
Sbjct: 391 EMNGKEVGGEEIEIVLAKP 409
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L +S G + ++R+M S +N+G+AF+T+ N + A
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 222
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L
Sbjct: 223 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQDVILYH 282
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 342
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+ L VT++ L+K F G++ +V ++ FVHF ER +A++A++
Sbjct: 343 KVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVQAME 394
Query: 336 NTEKYELDGQALECSLAKP 354
EL G+ +E LAKP
Sbjct: 395 GMNGKELGGEEIEIVLAKP 413
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L +S G + ++R+M S +N+G+AF+T+ N + A
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 338
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF ER +A++A+
Sbjct: 339 KVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMD 390
Query: 336 NTEKYELDGQALECSLAKP 354
E+ G+ +E LAKP
Sbjct: 391 EMNGKEVGGEEIEIVLAKP 409
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 140/257 (54%), Gaps = 11/257 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
GSE+++G +P D E +L C+ G++ EVR+M S N+G+AFVTF N + A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMM-DFSGNNRGYAFVTFSNKQEAKAA 113
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 114 MKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTEGVVDVIVYPSA 173
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L +A V WA+P VD + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKI 233
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL T++ ++K F + +V ++ FVHFA+R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKEVERV--------KKIRDYAFVHFAQREDAIHAMKEL 285
Query: 338 EKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 286 NGKVVDGSPIEVTLAKP 302
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NR F F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+ + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 158/268 (58%), Gaps = 15/268 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L ++ G + + R+M + N+G+AFVTF + A
Sbjct: 169 PGPGHEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQ 228
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E K ++++ + S A RLF+GNIP++ E++ + S++ +T V +V
Sbjct: 229 EAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKLTESLTDV-IVY 287
Query: 217 DMKNSS--NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
++ + + NRGFAF+EY +HK A +++K+ N ++ V WADP+ D S
Sbjct: 288 NVADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEEPDEETMS 347
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK +YV+NL ++VT+DQ+++ FE G++ +V ++ GFVHF ER A+ A
Sbjct: 348 KVKVLYVRNLKQDVTEDQIREKFEVFGKVERV--------KKIKDYGFVHFEEREHALAA 399
Query: 334 LKNTE-KYEL-DGQALECSLAKPQADQK 359
+K+ K EL +G +E SLAKP + K
Sbjct: 400 MKDLNGKQELGEGSVMEISLAKPPTENK 427
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 142/260 (54%), Gaps = 12/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L + IG + EVR+M S N+G+AFV +++ A
Sbjct: 43 PPRGCEVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDF-SGNNRGYAFVVYQSKSAAR 101
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+ I +LNN E + G+ I +S RLFIG IP+ E+++ ++++ V V +
Sbjct: 102 QCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKITEHVVDVIVYP 161
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQK-MTNPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
+ + NRGFAF+EY NH+ A +R+K M N N +L + V WA+P VD Q
Sbjct: 162 SASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIEVDEEIMDQ 221
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK VYV+NL + T++ L+++F+ R+ +V ++ F+HF + A A+
Sbjct: 222 VKIVYVRNLLLSTTEESLREIFQSIARVERV--------KKIRDYAFIHFTSKEDAHMAI 273
Query: 335 KNTEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 274 TLKNGQIIDGSTVEVTLAKP 293
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R AM+
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAME 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-SSENKGFAFVTFRNVE 154
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF N +
Sbjct: 158 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKD 217
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A +A+ +N E + GK + S A RLF+G+IP+N E + + S+V G+ V
Sbjct: 218 AALEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKVTEGLMEVI 277
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP + D
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDEPDPEIM 337
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+K
Sbjct: 338 AKVKVLFVRNLATPVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEDRDAAVK 389
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A++ EL+G+ +E LAKP
Sbjct: 390 AMQEMNCKELEGEEIEIVLAKP 411
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFVT+ + A
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVTYTHKHEAK 130
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 250
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A++A
Sbjct: 251 KILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVRA 302
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSA-GGSVSEKPSLLQNYP-PHIGYGLA- 384
+ + EL+G LE +LAKP QK+A GG+ SE NY P Y LA
Sbjct: 303 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEVTPQQPNYVYPCDPYTLAY 362
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 363 YGYPYSAL 370
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 245 MTNPNFKLGTNAPTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
M+NP+FKL NAPTVSWA+ R+ S ASQVKA+Y+KNLPR++TQ++LK LFEHHG+I
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG 362
KVV+PPAKPG+E +R GFVH+AER+S M+ALKNTE+YE+D A L A +AG
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLM--HAGGHAAG 118
Query: 363 GSVSEKPSLL 372
G +S P +L
Sbjct: 119 G-MSMMPIML 127
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A+K
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVK 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 87 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 146
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 147 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 206
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 207 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 266
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 267 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 318
Query: 336 NTEKYELDGQALECSLAKP 354
+L+G+ +E A P
Sbjct: 319 EMNGKDLEGENIEIVFANP 337
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 147/265 (55%), Gaps = 12/265 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 -KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA+
Sbjct: 338 MKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAM 389
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ +L+G+ +E AKP DQK
Sbjct: 390 EEMNGKDLEGENIEIVFAKP-PDQK 413
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 11/259 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP D E +L + G + ++R+M + N+G+AFVTF E A +A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++VK ++V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 341 ELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 243 DLEGENIEIVFAKP-PDQK 260
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 7/263 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA E D+R GE+TEVR++ + +NKG+ FV +R+ A KAI +
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
N + GK R + R+F+GNI + W ED+ K + ++G + V L D N
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQVKAVYV 280
NRGFAF+E + A + +K++ N F G N V+WA+P N QVK+++V
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI-RVAWAEPLNDPDEKDMQVKSIFV 415
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+P + QLK++F+ HG+I VV+ P ++ F+++ R +A+ L++ +K
Sbjct: 416 DGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKE 475
Query: 341 ELDGQA----LECSLAKPQADQK 359
E ++ SLAKP K
Sbjct: 476 EFSKNGSKVNIKVSLAKPAQQSK 498
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 141/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L ++ G + E+R+M D +N+G+AFV + A
Sbjct: 69 PPRGCEVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFDG-KNRGYAFVMYTQKYEAK 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 128 RAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHF R A++A
Sbjct: 248 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVQA 299
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N EL+G LE +LAKP
Sbjct: 300 MNNLNNTELEGSCLEVTLAKP 320
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 147/267 (55%), Gaps = 14/267 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG---PGVTGVE 213
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVI 277
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP + D
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+K
Sbjct: 338 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVK 389
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK 359
A++ +L+G+ +E AKP DQK
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKP-PDQK 415
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEVIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 11/259 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP D E +L + G + ++R+M + N+G+AFVTF E A +A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++VK ++V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 341 ELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 243 DLEGENIEIVFAKP-PDQK 260
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 11/259 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP D E +L + G + ++R+M + N+G+AFVTF E A +A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++VK ++V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 341 ELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 243 DLEGENIEIVFAKP-PDQK 260
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 7/263 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA E D+R GE+TEVR++ + +NKG+ FV +R+ A KAI +
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
N + GK R + R+F+GNI + W ED+ K + ++G + V L D N
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQVKAVYV 280
NRGFAF+E + A + +K++ N F G N V+WA+P N QVK+++V
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI-RVAWAEPLNDPDEKDMQVKSIFV 415
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+P + QLK++F+ HG+I VV+ P ++ F+++ R +A+ L++ +K
Sbjct: 416 DGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKE 475
Query: 341 ELDGQA----LECSLAKPQADQK 359
E ++ SLAKP K
Sbjct: 476 EFSKNGSKVNIKVSLAKPAQQSK 498
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 53 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 111
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 112 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 171
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 172 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 231
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 232 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 284
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 285 AMKALNGKMLDGSPIEVTLAKP 306
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 161/306 (52%), Gaps = 27/306 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSRDDAVHA 297
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSAGGSV-----SEKPSLLQNYPPHIGYG 382
+ + EL+G LE +LAKP QK+A G+V S++P+ + + P Y
Sbjct: 298 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGNVTAEVTSQQPNYVYSCDP---YT 354
Query: 383 LAGGTY 388
LA +Y
Sbjct: 355 LAYYSY 360
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 143/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M S N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFSGNNRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFNNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 147/265 (55%), Gaps = 12/265 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+ G IP D E +L + G++ ++R+M + N+G+ F+TF E A
Sbjct: 154 PPPGCEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAE 213
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A KL+N K GK I+ + S A RLF+GNIP++ +++ + S+ G+ V + +
Sbjct: 214 EAT-KLDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEGLVDVIIYR 272
Query: 217 DM-KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQ 274
K + NRGFAF+EY +HK A +++K++ K+ V WADP N D S+
Sbjct: 273 SAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVDNPDDETMSK 332
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +YV+NL VT+D +K+ F G+I + ++ GF+HF +R A+KA+
Sbjct: 333 VKVLYVRNLTSEVTEDIMKEKFGEFGKIERA--------KKVKDYGFIHFEDRDDAIKAM 384
Query: 335 KNTEKYELDGQALECSLAKPQADQK 359
+ ++ +E SLAKP ++ K
Sbjct: 385 QAMNGQKIGKLEIEVSLAKPPSENK 409
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 143/261 (54%), Gaps = 10/261 (3%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF +
Sbjct: 162 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDA 221
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A++A+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L
Sbjct: 222 AAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVIL 281
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D +
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMA 341
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK ++V+ L VT++ L+K F G++ +V ++ FVHF +R +A+KA
Sbjct: 342 KVKVLFVRKLATPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKA 393
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ EL G+ +E LAKP
Sbjct: 394 MSEMNGKELGGEEIEIVLAKP 414
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 143/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+EV++G IP D E +L ++ G + E+R+M D +N+G+AFV F A
Sbjct: 108 PPRGAEVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFDG-KNRGYAFVMFTAKSDAK 166
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ KLNN E KG+ + S RLF+G IP+ +D+ +++V GVT V +
Sbjct: 167 GAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKVTEGVTDVIVYP 226
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P ++VD QV
Sbjct: 227 SASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQDVDDEIMGQV 286
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL + T+D L+ +F G + +V ++ FVHF+ R + ++A
Sbjct: 287 KVLYVRNLMLDTTEDTLQNVFSQFKPGSVERV--------KKIRDYAFVHFSTREACIEA 338
Query: 334 LKNTEKYELDGQALECSLAKP 354
++ +D +E +LAKP
Sbjct: 339 MEKINGTHIDQAEVEVTLAKP 359
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 162/319 (50%), Gaps = 21/319 (6%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNAI 113
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 114 KTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK +
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNT 337
YV+NL + T++ ++K F + P A +K R FVHF +R A++A+K
Sbjct: 234 YVRNLMLSTTEETIEKEFNS-------IKPGAVERVKKIRDYAFVHFNKREHAVEAMKAL 286
Query: 338 EKYELDGQALECSLAKPQADQKS----AGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGA 393
LDG +E +LAKP D+ S G+ P L +Y +G+ Y A
Sbjct: 287 NGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRAPVLQGDYTYTLGH-----LYDPTAA 340
Query: 394 GFGAAAFAQTTVWSSTTQL 412
GA F +++ L
Sbjct: 341 YLGAPVFYAPQAYAAIPNL 359
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKMLDGSPIEVTLAKP 303
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNRQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKMLDGSPIEVTLAKP 303
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 162/308 (52%), Gaps = 29/308 (9%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHFA R A++A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVQAMNN 300
Query: 337 TEKYELDGQALECSLAKP------QADQKSA-GGSVSEK----PSLLQNYPPHIGYGLA- 384
EL+G LE +LAKP QK+A GG V+E PS + + P Y LA
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQPPSYVYSCDP---YTLAY 357
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 358 YGYPYNAL 365
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNRDDAIE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ +G++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMDFNGN-NRGYAFVTFSNRQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSSREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNRDDAIE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALHGKVLDGSPIEVTLAKP 303
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 19/266 (7%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ EVR+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ----EKNR-IGFVHFAERS 328
VK +YV+NL + +++ L+K F KPG +K R FVHF R
Sbjct: 229 SVKILYVRNLMLSTSEETLEKEFNS-----------IKPGSVERVKKIRDYAFVHFNNRD 277
Query: 329 SAMKALKNTEKYELDGQALECSLAKP 354
A+ A+K LDG +E +LAKP
Sbjct: 278 DAVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + A+
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAA 222
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E + + +V G+ V L
Sbjct: 223 EAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 282
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMAKV 342
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+ L VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 343 KVLFVRKLAIPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAMA 394
Query: 336 NTEKYELDGQALECSLAKP 354
EL G+ +E LAKP
Sbjct: 395 EMNGKELGGEGIEIVLAKP 413
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALHGKVLDGSPIEVTLAKP 303
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 142/259 (54%), Gaps = 9/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S G + E+R+M D +N+G+AFV F A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFDG-KNRGYAFVMFTKKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 126 QAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL ++D +KK+F G+ V K ++ FVHF+ R A+++++
Sbjct: 246 KILYVRNLMIETSEDTIKKIF---GQFNPGCVERVKKIRD---YAFVHFSSREDAVQSMR 299
Query: 336 NTEKYELDGQALECSLAKP 354
EL+G +E +LAKP
Sbjct: 300 KLNGTELEGSCIEVTLAKP 318
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + +
Sbjct: 56 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKNE 114
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 115 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 174
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD
Sbjct: 175 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 234
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL T+D +KK+F G + +V ++ FVHFA R A+
Sbjct: 235 TVKILYVRNLMIETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAV 286
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+ N EL+G LE +LAKP
Sbjct: 287 HAMNNLNGTELEGSCLEVTLAKP 309
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 141/263 (53%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ EVR+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL + +++ L+K F G + +V ++ FVHF R A+
Sbjct: 229 SVKILYVRNLMLSTSEETLEKEFNSIKPGSVERV--------KKIRDYAFVHFNNRDDAV 280
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 281 NAMKALNGKVLDGSPIEVTLAKP 303
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHA 297
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSAGGSVS 366
+ + EL+G LE +LAKP QK+A GS +
Sbjct: 298 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGSAT 336
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 24/296 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSRDDAVHA 297
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSAGGSV-----SEKPSLLQNYPPH 378
+ + EL+G LE +LAKP QK+A G+V S++P+ + + P+
Sbjct: 298 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGNVTAEVTSQQPNYVYSCDPY 353
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 116
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 176
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 177 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 236
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 237 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 289
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 290 AMKALNGKVLDGSPIEVTLAKP 311
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 154/293 (52%), Gaps = 14/293 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G +V++G IP E +L + G V + R+M S +N+G+ FVT+ N E
Sbjct: 156 AEPGTGCQVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEA 215
Query: 156 ASKAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A++ + L+N E + KK + SQ+ RLF+G+IP+ +++ + + G+ V +
Sbjct: 216 ATECVKMLDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGITQGLKDVII 275
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG-AS 273
++ NRGF F+EY +HK A +R+++++ K N +V WADP S S
Sbjct: 276 YLQTEDKMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWADPVEEPSDEIMS 335
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+VK +Y+KNL T++ + F +G + +V ++ FVHF ER +AMKA
Sbjct: 336 KVKVLYIKNLSMKATEEIVMATFSAYGEVERV--------KKIKDYAFVHFKERDNAMKA 387
Query: 334 LKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGG 386
L+ L+G+A+E SLAKP D+K + K + + +GYG G
Sbjct: 388 LEELNGLNLEGEAIEISLAKP-VDKKKKERQMERK---MMTHAYGMGYGNRAG 436
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 116
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 176
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 177 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 236
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 237 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 289
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 290 AMKALNGKVLDGSPIEVTLAKP 311
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 143/258 (55%), Gaps = 11/258 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAKNA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
+YV+NL + T++ ++K F + + P A +K R FVHF +R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNN-------IKPGAVERVKKIRDYAFVHFNKREDAVEAMKA 285
Query: 337 TEKYELDGQALECSLAKP 354
LDG +E +LAKP
Sbjct: 286 LNGKVLDGSPIEVTLAKP 303
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNRKDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 11/258 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF N + A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEARAA 113
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSA 173
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L +A V WA+P VD + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKI 233
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
+YV+NL T++ ++K F + P A +K R FVHF +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNS-------LKPGAVERVKKIRDYAFVHFTQREDAINAMKA 286
Query: 337 TEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 287 LNGKVVDGSPIEVTLAKP 304
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 155/289 (53%), Gaps = 20/289 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTEKHEAK 137
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 197
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 257
Query: 276 KAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL ++ ++++F + G + +V ++ FVHF R A+ A
Sbjct: 258 KILYVRNLMMETNEETIRQIFSQWNPGCVERV--------KKIRDYAFVHFTSRDDAVLA 309
Query: 334 LKNTEKYELDGQALECSLAKP-----QADQKSAGGSVSEKP--SLLQNY 375
+ N E++G +E +LAKP + QK++ G++ P + QNY
Sbjct: 310 MDNLNGTEIEGSCIEVTLAKPVDKEQYSRQKASKGAIPATPEATQQQNY 358
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 43 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 101
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 102 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 161
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 162 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 221
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 222 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 274
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 275 AMKALNGKVLDGSPIEVTLAKP 296
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 11/258 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF N + A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEARAA 113
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSA 173
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L +A V WA+P VD + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKI 233
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
+YV+NL T++ ++K F + P A +K R FVHF +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNS-------LKPGAVERVKKIRDYAFVHFTQREDAINAMKA 286
Query: 337 TEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 287 LNGKVVDGSPIEVTLAKP 304
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 116
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 176
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 177 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 236
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 237 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 289
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 290 AMKALNGKVLDGSPIEVTLAKP 311
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L +IG + E+R+M S N+GFAF+ F + + A++AI
Sbjct: 41 GTEIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMDFSGS-NRGFAFIQFAHRQDANRAI 99
Query: 161 DKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
++N E + + I S RLFIG IP+ E++Q + + GVT V + +
Sbjct: 100 QLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEGVTKVIVYSSIT 159
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAV 278
+ + NRGFAF+EY NH+ A +R+K+ +L V WA+P N ++ SQV +
Sbjct: 160 DKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENEIEEDVMSQVTVL 219
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
YV+NL T+ L++LF R++ V K ++ F+HF+ R A KA++N
Sbjct: 220 YVRNLSLTTTEQVLRELF---NRVSDDNVQKLKMMRD---FAFIHFSSREKAEKAMRNMN 273
Query: 339 KYELDGQALECSLAKP 354
E++G +E + AKP
Sbjct: 274 HTEINGTTIEITWAKP 289
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 163/309 (52%), Gaps = 29/309 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 70 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 128
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 188
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 189 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 248
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAMN 300
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSEK----PSLLQNYPPHIGYGLA 384
+ EL+G LE +LAKP QK+A GG+V+E PS + + P Y LA
Sbjct: 301 SLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAAAQPPSYVYSCDP---YTLA 357
Query: 385 --GGTYGAL 391
G Y AL
Sbjct: 358 YYGYPYNAL 366
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNRKDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 7/263 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA E D+R GE+TEVR++ + +NKG+ FV +R+ A KAI +
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
N + GK R + R+F+GNI + W ED+ K + ++G + V L D N
Sbjct: 71 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQVKAVYV 280
NRGFAF+E + A + +K++ N F G N V+WA+P N QVK+++V
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNI-RVAWAEPLNDPDEKDMQVKSIFV 189
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+P + QLK++F+ HG+I VV+ P ++ F+++ R +A+ L++ +K
Sbjct: 190 DGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKE 249
Query: 341 ELDGQA----LECSLAKPQADQK 359
E ++ SLAKP K
Sbjct: 250 EFSKNGSKVNIKVSLAKPAQQSK 272
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 33 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 91
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 92 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 151
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 152 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 211
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 212 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNRKDAVE 264
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 265 AMKALNGKVLDGSPIEVTLAKP 286
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 11/259 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + ++R+M D +N+G+AFV + + A
Sbjct: 66 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFDG-KNRGYAFVMYTHKREAK 124
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+N E + G+ + S RLFIG IP+ +++ + +S+V GV V +
Sbjct: 125 RAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKVTEGVLDVIVYA 184
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAFIEY +H+ A +R+K+ +L V WA+P +VD V
Sbjct: 185 SATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDEDVMETV 244
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +YV+NL +++ ++K F G + +V ++ FVHF R A++A+
Sbjct: 245 KILYVRNLMIKTSEETIRKTFSQFGCVERV--------KKIRDYAFVHFTSREDAIRAMN 296
Query: 336 NTEKYELDGQALECSLAKP 354
+ EL+G L +LAKP
Sbjct: 297 SLNGTELEGSCLGVTLAKP 315
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 82
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 203 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 255
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +SIG++ E+R+M + + N+G+AFV + + + A
Sbjct: 55 PSRGCEVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDFNGN-NRGYAFVMYTSRDDAK 113
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E KG+ + S RLF+G IP+N ++ + +S+V GV V +
Sbjct: 114 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYP 173
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD V
Sbjct: 174 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKSV 233
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL T++ LK+ FE+ VV P + +K R FVHF R A+KA+
Sbjct: 234 KVLYVRNLLLTTTEESLKESFEN------VVSPGSVERVKKIRDYAFVHFKTREEAVKAM 287
Query: 335 KNTEKYELDGQALECSLAKP 354
T +DG +E +LAKP
Sbjct: 288 NATNGQLIDGCQVEVTLAKP 307
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 82
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 203 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 255
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 19/279 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L +S+G + E+R+M D +N+G+AFV + + A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTHKHEAK 125
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T++ +KK F G + +V ++ FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHA 297
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSAGGSVS 366
+ + EL+G LE +LAKP QK+A GS +
Sbjct: 298 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGSAT 336
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 82
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 203 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 255
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 142/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL + T++ ++K F + G + +V ++ FVHF +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAMK 284
Query: 336 NTEKYELDGQALECSLAKP 354
LDG +E +LAKP
Sbjct: 285 ALNGKVLDGSPIEVTLAKP 303
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 151/272 (55%), Gaps = 8/272 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA+E DLR Q IGE+ EVR+ K +++NKG+AFV F N E A KA+ +
Sbjct: 459 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSE 518
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
+ N GK+ + S+ LF+GNI W E +++ + + G GV + LV D+++
Sbjct: 519 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHE 578
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGFAF+E+ H A + +++ P+ G T V++A+P D +QVK+V
Sbjct: 579 GLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSV 638
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D +++LF+ +G I ++V+ ++ GFV F+ +A+ +
Sbjct: 639 FINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVN 698
Query: 339 KYEL-DGQA---LECSLAKPQADQKSAGGSVS 366
K EL DG + + L+ P ++ G +S
Sbjct: 699 KSELGDGASKIKVRARLSNPLPKTQAVKGGMS 730
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 142/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL + T++ ++K F + G + +V ++ FVHF +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAMK 284
Query: 336 NTEKYELDGQALECSLAKP 354
LDG +E +LAKP
Sbjct: 285 ALNGKVLDGSPIEVTLAKP 303
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 162/308 (52%), Gaps = 29/308 (9%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHFA R A++A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVQAMNN 300
Query: 337 TEKYELDGQALECSLAKP------QADQKSA-GGSVSEK----PSLLQNYPPHIGYGLA- 384
EL+G LE +LAKP QK+A GG V+E PS + + P Y LA
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQPPSYVYSCDP---YTLAY 357
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 358 YGYPYNAL 365
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 12/263 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+YIG IP++ E L + +G++ ++R+M + +N+G+AF+TF A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 161 DKLNNTE-FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--D 217
K + E GK ++ + S A RLFIGNIP++ E++ E GVT + D
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
S NRGF F+++ +HK A +++K+ + V WA+ + D ++VK
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YV+NL VT++QLK++F HG + V ++ F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 337 TEKYELDGQALECSLAKPQADQK 359
L+G +E SLAKPQ+D+K
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E+++G IP D E +L S+G + E+R+M S N+G+AFV + N E A
Sbjct: 71 PGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMM-DFSGNNRGYAFVMYTNKEDAK 129
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KAI +LNN E KG+ + S RLF+G IP+N +++ + +V GV V +
Sbjct: 130 KAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGVVDVIVYP 189
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY NH+ A +R+K+ +L + V WA+P + VD V
Sbjct: 190 SATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMKTV 249
Query: 276 KAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL N T++ ++K F G + +V ++ FVHF R A+ A
Sbjct: 250 KVLYVRNLMLNTTEETIEKEFNSLKEGSVERV--------KKIRDYAFVHFVTREDALYA 301
Query: 334 LKNTEKYELDGQALECSLAKP 354
L + +DG +E LAKP
Sbjct: 302 LNAMNGHNVDGSVVEVVLAKP 322
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 12/263 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+YIG IP++ E L + +G++ ++R+M + +N+G+AF+TF A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 161 DKLNNTE-FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--D 217
K + E GK ++ + S A RLFIGNIP++ E++ E GVT + D
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
S NRGF F+++ +HK A +++K+ + V WA+ + D ++VK
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YV+NL VT++QLK++F HG + V ++ F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 337 TEKYELDGQALECSLAKPQADQK 359
L+G +E SLAKPQ+D+K
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 28/308 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSE---KPSLLQNYPPHIGYGLA- 384
N EL+G LE +LAKP QK+A GGS +E +PS + + P Y LA
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSYVYSCDP---YTLAY 356
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 357 YGYPYNAL 364
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 18/288 (6%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+PP G EV++G IP D E +L ++ G + EVR+M + +N+G+AFV + + + A
Sbjct: 52 IPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNG-QNRGYAFVVYTSKDDA 110
Query: 157 SKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+ + LNN E KGK I +S RLF+G IP+ +++ VS+V V V +
Sbjct: 111 KRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKVTDNVVDVIVY 170
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQ 274
++ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P + VD Q
Sbjct: 171 PSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQEIMDQ 230
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK +Y +NL + T++ +++ F G + +V ++ F+HF + A A+
Sbjct: 231 VKVLYARNLLLSTTEETIEQAFSKFGEVERV--------KKIKDYCFIHFRTKEQARDAM 282
Query: 335 KNTEKYELDGQALECSLAKP-QADQKSA------GGSVSEKPSLLQNY 375
+ + ELDG +E +LAKP D +S G+ S +P +Y
Sbjct: 283 EAMNETELDGNEIEVTLAKPVDKDHRSPLLFRGYYGTPSMRPGFYGDY 330
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
GSE+++G +P D E +L C+ G++ EVR+M S N+G+AFVTF N + A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMM-DFSGNNRGYAFVTFSNKQEAKAA 113
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTDGVLDVIVYPSA 173
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L +A V WA+P VD + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKI 233
Query: 278 VYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ ++K F G + +V ++ FVHF +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKQGAVERV--------KKIRDYAFVHFTQREDAIHAMN 285
Query: 336 NTEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 286 ALNGKVVDGSPIEVTLAKP 304
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + V P A +K R FVHF+ R A++
Sbjct: 229 LVKILYVRNLMLSTSEEMIEKEFNN-------VKPGAVERVKKIRDYAFVHFSHREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 12/263 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+YIG IP++ E L + +G++ ++R+M + +N+G+AF+TF A++A
Sbjct: 185 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 244
Query: 161 DKLNNTE-FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--D 217
K + E GK ++ + S A RLFIGNIP++ E++ E GVT + D
Sbjct: 245 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 304
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
S NRGF F+++ +HK A +++K+ + V WA+ + D ++VK
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 364
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YV+NL VT++QLK++F HG + V ++ F+HF ER A+KA++
Sbjct: 365 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 416
Query: 337 TEKYELDGQALECSLAKPQADQK 359
L+G +E SLAKPQ+D+K
Sbjct: 417 LNGTVLEGVPIEISLAKPQSDKK 439
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 150/279 (53%), Gaps = 20/279 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK+F G + +V ++ FVHFA R A+ A+K
Sbjct: 248 LYVRNLMMETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMK 299
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSE 367
+L+G LE +LAKP QK+A GG V+E
Sbjct: 300 KLNGTDLEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAE 338
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 143/262 (54%), Gaps = 19/262 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E DL + +G + E R+M + S EN+G+AFV + + E A +A
Sbjct: 75 RGCEVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMM-EFSGENRGYAFVMYTDREAAQRA 133
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I L+N E + GK I S RLFIG+IP++ +++ + + +V GV +
Sbjct: 134 IQMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKVTDGVVDAIVYPST 193
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKA 277
+ + NRGFAF+EY +HK A +R+K+ F+L ++ V WA+P ++VD +V+
Sbjct: 194 TDKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKDVDEEVMQRVRV 253
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMK 332
+YV+NL +++ L++ F KPG ++ + F+H+ RS A+
Sbjct: 254 LYVRNLMLETSEETLRQEFSRF-----------KPGCVERVKKLSDYAFIHYRSRSDALT 302
Query: 333 ALKNTEKYELDGQALECSLAKP 354
AL +DG A+E +LAKP
Sbjct: 303 ALSLMNGAHIDGAAVEVTLAKP 324
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 142/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A
Sbjct: 210 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKADAK 268
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + S RLFIG IP+ E++ + +S+V GV V +
Sbjct: 269 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 328
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 329 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 388
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +KK+F G + +V ++ FVHFA R A+ A
Sbjct: 389 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHA 440
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ + EL+G LE +LAKP
Sbjct: 441 MNHLNGTELEGSCLEVTLAKP 461
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 19/288 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 81 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTEKHEAK 139
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 140 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 199
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 200 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 259
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL +++ ++++F G + +V ++ FVHF R A+ A
Sbjct: 260 KILYVRNLMMETSEEAIRQIFSQFNPGCVERV--------KKIRDYAFVHFTSRDDAVLA 311
Query: 334 LKNTEKYELDGQALECSLAKP------QADQKSAGGSVSEKPSLLQNY 375
+ N E++G +E +LAKP + S GG+ + QNY
Sbjct: 312 MDNLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGGASATSEPTQQNY 359
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEIIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 155/287 (54%), Gaps = 18/287 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTEKHEAK 137
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 197
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 257
Query: 276 KAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL +++ ++K+F + G + +V ++ FVHF R A+ A
Sbjct: 258 KILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLA 309
Query: 334 LKNTEKYELDGQALECSLAKP-----QADQKSAGGSVSEKPSLLQNY 375
+ + E++G +E +LAKP + QK++ G+ + + QNY
Sbjct: 310 MNHLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAPATPEATQQNY 356
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 159/308 (51%), Gaps = 26/308 (8%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL T++ +KK F G+ V K ++ FVHF R A+ A+ N
Sbjct: 248 LYVRNLMIETTEETIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNL 301
Query: 338 EKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGLA- 384
EL+G LE +LAKP Q K GGS V+++PS + + P Y LA
Sbjct: 302 NGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTLAY 358
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 359 YGYPYNAL 366
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 142/261 (54%), Gaps = 16/261 (6%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLFIG IP+ E++ V +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
VK +YV+NL + +++ +++ F + KP E FVHF++R A++A
Sbjct: 229 SVKILYVRNLMLSTSEEIIEREFNN-----------IKP--EIWDYAFVHFSKREDAVEA 275
Query: 334 LKNTEKYELDGQALECSLAKP 354
+K LDG +E +LAKP
Sbjct: 276 MKALNGKVLDGSPIEVTLAKP 296
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 163/309 (52%), Gaps = 29/309 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 70 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 128
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 188
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 189 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 248
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAMN 300
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSEK----PSLLQNYPPHIGYGLA 384
+ EL+G LE +LAKP QK+A GG+V+E PS + + P Y LA
Sbjct: 301 SLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAAAQPPSYVYSCDP---YTLA 357
Query: 385 --GGTYGAL 391
G Y AL
Sbjct: 358 YYGYPYNAL 366
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 11/259 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++++G IP D E +L + G + ++R+M + N+G+AFVTF E A +A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRG F+EY +HK A +R+++ + K+ N TV WADP + D ++VK ++V
Sbjct: 131 KKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 341 ELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 243 DLEGENIEIVFAKP-PDQK 260
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 117/232 (50%), Gaps = 87/232 (37%)
Query: 115 EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174
E + F IG + +IM+ K+ + KG+ FVTFR +LA++AID LNNT F+
Sbjct: 90 EDQMFKFALLIG-LGRQKIMREKEPGDGKGYPFVTFRCKDLAAEAIDNLNNTVFRE---- 144
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
P+N G NRGFAFIEY+N
Sbjct: 145 ---------------PQNMG----------------------------RNRGFAFIEYYN 161
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
H VKA+Y+KNLPR++TQ++LK
Sbjct: 162 H---------------------------------------VKALYIKNLPRDITQERLKA 182
Query: 295 LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
LFEHHG+I KVV+PPAKPG+E +R GFVH+AER+S M+ALKNTE+YE+DG A
Sbjct: 183 LFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHA 234
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 145/267 (54%), Gaps = 14/267 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE---NKGFAFVTFRNVE 154
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKE 217
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A +A NN E + GK I S A RLF+G+IP++ E + + S+V G+T V
Sbjct: 218 AAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVI 277
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F EY +HK A +R+++ + K+ N TV WADP + D
Sbjct: 278 LYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+K
Sbjct: 338 AKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVK 389
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK 359
A++ +L+G+ +E AKP DQK
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKP-PDQK 415
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 140/257 (54%), Gaps = 9/257 (3%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL T+D +KK F G+ V K ++ FVHFA R A+ A+ N
Sbjct: 248 LYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVHAMNNL 301
Query: 338 EKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 142/261 (54%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTQKHEAK 136
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 256
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL +++ L++ F G + +V ++ FVHFA R A+ A
Sbjct: 257 KILYVRNLMIETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVA 308
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ N E++G +E +LAKP
Sbjct: 309 MDNLNGTEIEGSRIEVTLAKP 329
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 144/263 (54%), Gaps = 13/263 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G +P D E +L +S G + E R+M + S EN+G+AFV + + E A +A
Sbjct: 71 RGCEVFVGKVPRDMYEDELVPLFESAGRIYEFRLMM-EFSGENRGYAFVMYTSREEAVRA 129
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I L+ E + G+ I S RLFIG+IPR+ E++ + + +V GV V +
Sbjct: 130 IQMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKVTDGVVDVIVYPSS 189
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKA 277
+ + NRGFAF+EY +HK A +R+K+ F+L + V WA+P ++++ +V+
Sbjct: 190 SDRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEKDMEEEAMQRVRV 249
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL + T++ L++ F G + +V ++ FVHF RS A+ L
Sbjct: 250 LYVRNLMLDTTEETLRREFSRFKPGSVERV--------KKLTDYAFVHFRSRSEALATLA 301
Query: 336 NTEKYELDGQALECSLAKPQADQ 358
++DG +E SLAKP ++
Sbjct: 302 VMNGVQIDGTTVEVSLAKPTGNK 324
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 147/267 (55%), Gaps = 14/267 (5%)
Query: 99 PHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
P GS E+YIG IP + E L + +G++ ++R+M + N+G+AF+T+ + A
Sbjct: 308 PQGSGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSA 367
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+A K + E GK ++ + S A RLFIGNIP++ E++ E GVT +
Sbjct: 368 YEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIY 427
Query: 216 K--DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGA 272
D S NRGF F+++ +HK A +++K+ + + V WA+ + D
Sbjct: 428 SSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 487
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK +YV+NL VT++QLK++F +G + + ++ F+HF ER A+K
Sbjct: 488 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 539
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK 359
A++ EL+G A++ SLAKPQ+D+K
Sbjct: 540 AMEALNGTELEGIAIDISLAKPQSDKK 566
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 28/308 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSE---KPSLLQNYPPHIGYGLA- 384
N EL+G LE +LAKP QK+A GGS +E +PS + + P Y LA
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSYVYSCDP---YTLAY 356
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 357 YGYPYNAL 364
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 12/263 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+YIG IP + E L + +G++ ++R+M + N+G+AF+T+ + A +A
Sbjct: 279 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAA 338
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--D 217
K + E GK ++ + S A RLFIGNIP++ E++ E GVT + D
Sbjct: 339 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 398
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVK 276
S NRGF F+++ +HK A +++K+ + + V WA+ + D ++VK
Sbjct: 399 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMAKVK 458
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YV+NL VT++QLK++F +G + + ++ F+HF ER A+KA++
Sbjct: 459 VLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEA 510
Query: 337 TEKYELDGQALECSLAKPQADQK 359
EL+G A++ SLAKPQ+D+K
Sbjct: 511 LNGTELEGIAIDISLAKPQSDKK 533
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 144/263 (54%), Gaps = 12/263 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+YIG IP++ E L + +G++ ++R+M + +N+G+AF+TF A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 161 DKLNNTE-FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--D 217
K + E GK ++ + S A RLFIGNIP++ E++ E GV + D
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVVDCIIYTSPD 316
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
+ NRGF F+++ +HK A +++K+ + + V WA+ + D S+VK
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMSKVK 376
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YV+NL VT++QLK++F HG + + ++ F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFAAHGEVERA--------KKIRDYAFIHFKEREPALKAMEA 428
Query: 337 TEKYELDGQALECSLAKPQADQK 359
L+G A+E SLAKPQ D+K
Sbjct: 429 LNGTVLEGIAIEISLAKPQGDKK 451
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 28/308 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP------QADQKSA-GGSVSE---KPSLLQNYPPHIGYGLA- 384
N EL+G LE +LAKP QK+A GGS +E +PS + + P Y LA
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSYVYSCDP---YTLAY 356
Query: 385 -GGTYGAL 391
G Y AL
Sbjct: 357 YGYPYNAL 364
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 140/258 (54%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNN 300
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 147/267 (55%), Gaps = 14/267 (5%)
Query: 99 PHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
P GS E+YIG IP + E L + +G++ ++R+M + N+G+AF+T+ + A
Sbjct: 288 PQGSGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAA 347
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+A K + E GK ++ + S A RLFIGNIP++ E++ E GVT +
Sbjct: 348 YEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIY 407
Query: 216 K--DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGA 272
D S NRGF F+++ +HK A +++K+ + + V WA+ + D
Sbjct: 408 SSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 467
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK +YV+NL VT++QLK++F +G + + ++ F+HF ER A+K
Sbjct: 468 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA--------KKIRDYAFIHFMEREPAIK 519
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK 359
A++ EL+G A++ SLAKPQ+D+K
Sbjct: 520 AMEALNGTELEGIAIDISLAKPQSDKK 546
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 150/272 (55%), Gaps = 16/272 (5%)
Query: 96 ALPPHG-----SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
A+PP ++V++ IP D E +L + G + ++R+M S +N+G+AFVT+
Sbjct: 143 AMPPPCLVLLLAQVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTY 202
Query: 151 RNVELASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
E A A+ +L+N E KG+ + S A RLF+G+IP+N +++ +V G+
Sbjct: 203 TTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKVTNGL 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADP-RNV 267
V + ++ NRGFAF+EY +HK A +R+++ + K+ G TV WADP
Sbjct: 263 KDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEP 322
Query: 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
D S+VK +YV+NL ++ ++ FE +G + +V ++ FVHF R
Sbjct: 323 DDEVMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV--------KKIKDYAFVHFENR 374
Query: 328 SSAMKALKNTEKYELDGQALECSLAKPQADQK 359
A+KA+++ EL+G A+E SLAKP +++K
Sbjct: 375 EDAIKAMEDLNGKELEGSAMEISLAKPPSEKK 406
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E+++G +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 AAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKVTEGVVEVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ +++ F + + P A +K R FVHF R A+
Sbjct: 229 SVKILYVRNLMLSTSEETIEREFNN-------IKPGAVERVKKIRDYAFVHFNNREDAVG 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 140/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 17/266 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S+++IG +P D E +L + G + ++RIM S NKGFAF T+ E A+ A+
Sbjct: 164 SQIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVK 223
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV---TGVELVKD 217
+++ + + GK + SQA RLF+G+IP+ S+ Q++ E V + V +
Sbjct: 224 EMDGKQVRDGKTLGVCLSQANNRLFVGSIPK---SKTKQQIFDEFASKVENLSDVIVYIS 280
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADP-RNVDSSGASQV 275
++ S NRGFAF+E+ HK A +R++ K+ G PTV WADP D + S+V
Sbjct: 281 SEDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDWADPVEEPDDNVMSKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K VYV+NL + + +L +LF+ +G + KV ++ F+HF R A++A++
Sbjct: 341 KVVYVRNLSPAIEETKLNELFKQYGAVEKV--------KKLKDYAFIHFVNRDDAVRAIE 392
Query: 336 NTEKYELDGQALECSLAKPQADQKSA 361
+LD +E SLAKPQ ++K A
Sbjct: 393 ELNGQDLDDLKIEVSLAKPQTEKKEA 418
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 140/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 142/263 (53%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + +
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHE 123
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 183
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD
Sbjct: 184 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 243
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL T+D +KK F G + +V ++ FVHFA R A+
Sbjct: 244 TVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAV 295
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+ + EL+G LE +LAKP
Sbjct: 296 HAMNSLNGTELEGSCLEVTLAKP 318
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 153/275 (55%), Gaps = 12/275 (4%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K + E L P GSE+++G IP + E ++ + GEV ++R+M + +N+G+AF
Sbjct: 157 KPEDCETLPPPIQGSEIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAF 216
Query: 148 VTFRNVELASKAIDKLNNTEFKGK-KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
F ++E A +A+ +LN + K ++ + S K RL++G+IP+N +++ + ++V
Sbjct: 217 AAFTSIEGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVE 276
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR 265
G+ V + K ++ NRGFAF+E+ +HK A +++K+ + K+ V WADP
Sbjct: 277 KGLLDVIIYK-TEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPV 335
Query: 266 -NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
DS S+VK VY++NL T+ ++K+ F +G + K ++ FVHF
Sbjct: 336 IEPDSDTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEKA--------KKMKDYCFVHF 387
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
ER +A+KA++ E +G +E SLAKP + K
Sbjct: 388 KERDAAVKAIEEMNGKEYEGTTIEVSLAKPPMENK 422
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 141/263 (53%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ G++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL + +++ ++K F+ G + +V ++ FVHF R A+
Sbjct: 229 SVKILYVRNLMLSTSEETIEKEFDSIKPGSVERV--------KKIRDYAFVHFNNREDAV 280
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 281 NAMKALNGKVLDGSPIEVTLAKP 303
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E ++ + G++ ++R+M S N+G+AFVTF + E A +A+ +
Sbjct: 175 QVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 163 LNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E KGK + S A +RLF+G+IP+ +++ + ++ G+T V + ++
Sbjct: 235 LDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVGGLTDVIIYHMPEDR 294
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADPR-NVDSSGASQVKAVY 279
NRGFAF+ + +HK A +R+++ + K+ G + TV WADP+ D ++VK +Y
Sbjct: 295 KKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMAKVKVLY 354
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
V+NL + +++LK+ F+ G + +V ++ FVHF ER +A+KA++
Sbjct: 355 VRNLTPDAEEEKLKEAFQAFGTVERV--------KKLKDYCFVHFEERDAAVKAMEELNG 406
Query: 340 YELDGQALECSLAKPQADQK 359
E++G ++ SLAKP ++ K
Sbjct: 407 KEVEGSVVDISLAKPPSENK 426
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
V+V +PR++ +D++ LFE G+I + + P NR FV F +R A +A+K
Sbjct: 176 VFVGKIPRDMFEDEIIPLFEKCGKIWDLRL-MMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 337 TEKYEL-DGQALECSLAKPQADQKSAGGSVSEKPS---LLQNYPPHIG 380
+ +E+ G+ L ++ A+ + GS+ + S +L+ + H+G
Sbjct: 235 LDNHEIRKGKHLGVCIS--VANHRLFVGSIPKTKSKDEILEEFNKHVG 280
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + V++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 33/313 (10%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L +++G + E+R+M D +N+G+AF+ + +
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFIMYCHKHE 123
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A +A+ +LNN E + G+ + S RLFIG IP+ E++ KV GV V +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKLKKREEIAKVTE----GVLDVIM 179
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD
Sbjct: 180 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 239
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL T+D +KK F G + +V ++ FVHF R A+
Sbjct: 240 TVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAV 291
Query: 332 KALKNTEKYELDGQALECSLAKP------QADQKSAGG-----SVSEKPSLLQNYPPHIG 380
A+ N EL+G LE +LAKP QK+A G +V++ PS + + P
Sbjct: 292 HAMSNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAVAQPPSYVYSCDP--- 348
Query: 381 YGLA--GGTYGAL 391
Y LA G Y AL
Sbjct: 349 YTLAYYGYPYNAL 361
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
YV+NL T+D +KK F G+ V K ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLN 302
Query: 339 KYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 303 GTELEGSCLEVTLAKP 318
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRAV 127
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 247
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 248 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 299
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 300 LNGTELEGSCLEVTLAKP 317
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 30/310 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGL 383
N EL+G LE +LAKP Q K GGS V+++PS + + P Y L
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTL 356
Query: 384 A--GGTYGAL 391
A G Y AL
Sbjct: 357 AYYGYPYNAL 366
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 105 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKSEAKRA 163
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 164 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 223
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 224 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 283
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 284 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMN 335
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 336 NLNGTELEGSCLEVTLAKP 354
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 141/262 (53%), Gaps = 19/262 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IRQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKVTDGVVDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSAVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ----EKNR-IGFVHFAERSSAMK 332
+YV+NL + T++ ++K F KPG +K R FVHF R A++
Sbjct: 233 LYVRNLMLSTTEETIEKEFSS-----------IKPGSVERVKKIRDYAFVHFNNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K +DG ++ +LAKP
Sbjct: 282 AMKVLNGKMVDGSPIKVTLAKP 303
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 106 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 164
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 165 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 224
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 225 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 284
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 285 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMN 336
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 337 NLNGTELEGSCLEVTLAKP 355
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 30/310 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGL 383
N EL+G LE +LAKP Q K GGS V+++PS + + P Y L
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTL 356
Query: 384 A--GGTYGAL 391
A G Y AL
Sbjct: 357 AYYGYPYNAL 366
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 177/337 (52%), Gaps = 31/337 (9%)
Query: 40 EEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGD--------MQIEDED----- 86
E+E++ E V EEEE+++ E E+E+ EE + + ++ + E+ D
Sbjct: 129 EDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMF 188
Query: 87 -EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
E++K E EV++GG+ D DLR +GEVTEVR+M + +NKGF
Sbjct: 189 QERRKRKEF--------EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF 240
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV 205
AF+ F VE A +A+ +L N GK+ + SQ LF+GNI + W E L++ +
Sbjct: 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY 300
Query: 206 G-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWAD 263
G V + LV+D N NRGFAF+E+ + A + +++ + G + P VS+AD
Sbjct: 301 GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360
Query: 264 PRNVDSSG--ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+D +QVK V+V LP + +D++++L +++G ITK+ + P ++ GF
Sbjct: 361 -SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419
Query: 322 VHFAERSSAM---KALKNTEKYELDGQA-LECSLAKP 354
V F +A+ K++ N E E D +A + L++P
Sbjct: 420 VTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKSEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 68 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 126
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 127 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 186
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 187 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 246
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 247 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 298
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 299 NLNGTELEGSCLEVTLAKP 317
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 13/260 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKPQ 355
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKPM 319
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKNEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A
Sbjct: 38 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 96
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 97 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 156
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +V
Sbjct: 157 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 216
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL + T++ +K F G + +V ++ FVHF R A+ A
Sbjct: 217 KVLYVRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAA 268
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ +DG ++E +LAKP
Sbjct: 269 MSVMNGKCIDGASIEVTLAKP 289
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 141/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFVT+ + A +A
Sbjct: 71 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVTYCHKGEAKRA 129
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 130 VRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 189
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 190 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 249
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMN 301
Query: 336 NTEKYELDGQALECSLAKP 354
+ EL+G LE +LAKP
Sbjct: 302 SLNGTELEGSCLEVTLAKP 320
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAGA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 143/260 (55%), Gaps = 9/260 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GEVTEVR+M + +NKGFAF+ F VE A KA+ +
Sbjct: 214 EVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTE 273
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L N GK+ + SQ LF+GNI + W E L++ + G V V LV+D N
Sbjct: 274 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNE 333
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVKAV 278
NRGFAF+E+ + A + +++ + G + P VS+AD +D +QVK V
Sbjct: 334 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS-FIDPGDEIMAQVKTV 392
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALK 335
+V LP + +D++++L + G I K+ + P ++ GFV F +A+ K++
Sbjct: 393 FVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSIN 452
Query: 336 NTEKYELDGQA-LECSLAKP 354
N E E D +A + L++P
Sbjct: 453 NAELGEGDNKAKVRARLSRP 472
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 159/310 (51%), Gaps = 30/310 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ +K+ F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGL 383
N EL+G LE +LAKP Q K GGS V+++PS + + P Y L
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTL 356
Query: 384 A--GGTYGAL 391
A G Y AL
Sbjct: 357 AYYGYPYNAL 366
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 362 EMNGKEIEGEEIEIVLAKP 380
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 90
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 31 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 89
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 90 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 149
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 150 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 209
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 261
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 262 NLNGTELEGSCLEVTLAKP 280
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 153/287 (53%), Gaps = 18/287 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E+++G IP D E +L +S+G + E+R+M D +N+G+AFV + A
Sbjct: 86 PQRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFDG-KNRGYAFVMYTEKHEAK 144
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E + G+ + +S RLFIG IP+ E++ + VS+V GV V +
Sbjct: 145 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 204
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD V
Sbjct: 205 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 264
Query: 276 KAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL +++ ++K+F + G + +V ++ FVHF R A+ A
Sbjct: 265 KILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLA 316
Query: 334 LKNTEKYELDGQALECSLAKP-----QADQKSAGGSVSEKPSLLQNY 375
+ E++G +E +LAKP + QK++ G+ + + QNY
Sbjct: 317 MNQLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAAATPEATQQNY 363
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 292 EMNGKEIEGEEIEIVLAKP 310
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 90
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 90
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 263 LNGTELEGSCLEVTLAKP 280
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 13/258 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L +++G E+R+M D +N+G+AFV + + A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAV 128
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAV 278
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK +
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
YV+NL T+D +KK F G + +V ++ FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 337 TEKYELDGQALECSLAKP 354
EL+G LE +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 144/267 (53%), Gaps = 13/267 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + + EN+G+AFV + N E A +AI
Sbjct: 76 CEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMM-EFTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
L+N + + GK I S RLFIG+IP+ +++ + +V GV V + +
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKVTDGVVDVIMYPSSTD 194
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
S NRGFAF+EY +HK A +R+K+ F+L + V WA+P ++V+ +V+ +Y
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEKDVEEEVMQRVRVIY 254
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ L + F H G + +V ++ FVH+ R A+ AL
Sbjct: 255 VRNLMLSTTEETLFQEFSHFKPGSVERV--------KKLTDYAFVHYYCREDALAALAIM 306
Query: 338 EKYELDGQALECSLAKPQADQKSAGGS 364
++DG +E LAKP ++ + GS
Sbjct: 307 NGVQIDGATIEVMLAKPATIKEDSNGS 333
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA+E DLR Q IGE+ EVR+ K +++NKG+AFV F + E A KA+ +
Sbjct: 390 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSE 449
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
+ N GK+ + S+ LF+GNI W E +++ + + G GV + LV D+++
Sbjct: 450 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHE 509
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+ GFAF+E+ H A + +++ P+ G T V++A+P R D +QVK+V
Sbjct: 510 GLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSV 569
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D +++LF+ +G + ++V+ ++ GFV F+ +A+ +
Sbjct: 570 FINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVN 629
Query: 339 KYEL 342
K EL
Sbjct: 630 KSEL 633
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 185/380 (48%), Gaps = 63/380 (16%)
Query: 24 DEKVDFDEDNDPEETMEE----EYEYEEVEEEEEEEVI------------------EEEV 61
DE++D EDNDPE EE +Y+ +E+E+EE EV EEEV
Sbjct: 109 DERLDL-EDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVVEEGDSGEEEV 167
Query: 62 EE-----------------EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEV 104
E+ E E AD + ++ E K+K E V
Sbjct: 168 EDGHDEIEGEEDDEHADEEHDRERAEMADVDEEEHREVVKERRKRKEFE----------V 217
Query: 105 YIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164
++GG+ DA+E DLR +G VTEVR+M + +NKGFAF+ F NVE A +A+ +L
Sbjct: 218 FVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELK 277
Query: 165 NTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE---LVKDMKNS 221
N GK+ + SQ L++GNI + W E L++ + GVT VE LV+D +
Sbjct: 278 NPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHY--GVTNVEDITLVEDSNDK 335
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVKAV 278
NRGFAF+E+ + A + +++ + G + P VS+AD +D SQVK V
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS-FIDPGDEIMSQVKTV 394
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK---ALK 335
++ LP + +D ++ L + +G + K+ + P + GFV F +A++ ++
Sbjct: 395 FIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSIT 454
Query: 336 NTEKYELDGQA-LECSLAKP 354
TE E D +A + L++P
Sbjct: 455 GTELGEGDKKAKVRARLSRP 474
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 156/305 (51%), Gaps = 20/305 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV++G +P D E +L + +G + E+R+M + +N+G+ FV + + A
Sbjct: 84 PPRGCEVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMDYNG-QNRGYGFVIYLSSRDAQ 142
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ LNN E K + I S RLFIG IP+ +++ + +S+V V V +
Sbjct: 143 RAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKVTDSVVNVIVYP 202
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ S NRGFAF+EY+ H+ A +R+K+ N +L + V WA+P +++D QV
Sbjct: 203 SATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDEDIMDQV 262
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K +Y++NL N T++ ++ LF+ + +V ++ FVHF R A AL+
Sbjct: 263 KVLYIRNLQLNTTEETIENLFKKFAEVERV--------KKIKDYCFVHFVTREGARLALE 314
Query: 336 NTEKY---ELDGQALECSLAKP----QADQKSAGGSVSEKPSLLQNYP--PHIGYGLAGG 386
+ + +DG +E +LAKP Q+ A + + + Q+ P PH +
Sbjct: 315 SVKANNGESIDGAKIEVTLAKPVDKEHYRQQKAVAKLMQMANQYQHIPSFPHDFFPFNNQ 374
Query: 387 TYGAL 391
+G L
Sbjct: 375 MHGGL 379
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 146/259 (56%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + ++V G+ V L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + +V G+ V L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 1/241 (0%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA E D+R GE+TEVR++ + +NKG+ FV +R+ A KAI +
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
N + GK R + R+F+GNI + W ED+ K + ++G + V L D N
Sbjct: 71 FGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVK 281
NRGFAF+E + A + +K++ N + V+WA+P N +QVK+++V
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDAQVKSIFVD 190
Query: 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341
+P + QLK++F+ HG+I VV+ P ++ F+++ R +A+ L++ +K E
Sbjct: 191 GIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEE 250
Query: 342 L 342
Sbjct: 251 F 251
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +N E + GK + S A RLF+G+IP+N E++ + +V G+ V L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 133 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 192
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 193 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 252
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 253 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 312
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 313 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 364
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 365 EMNGKEIEGEEIEIVLAKP 383
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 362 EMNGKEIEGEEIEIVLAKP 380
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 62/313 (19%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV+ G IP D E +L +S G + ++R+M S N+G+AFVTF E +A+
Sbjct: 164 GCEVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAV 223
Query: 161 DK----------------------------------------------------LNNTEF 168
+ L+N E
Sbjct: 224 QEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEI 283
Query: 169 K-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
K GK +R S RLF+GNIP++ G E++ + ++ G+ V + + NRGF
Sbjct: 284 KPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGF 343
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRN 286
F+EY +HK A +++++ K+ V WADP+ D S+VK +YV+NL +
Sbjct: 344 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQE 403
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
+T++ LK+ FE +G + +V ++ FVHF +R A+KA++ + EL G
Sbjct: 404 ITEEALKEEFERYGNVERV--------KKIKDYAFVHFEDRDCAVKAMQEIDGKELGGAR 455
Query: 347 LECSLAKPQADQK 359
LE SLAKP +D+K
Sbjct: 456 LEVSLAKPPSDKK 468
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF + A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY H+ A +R+K+ +L + V WA+P VD + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL T++ ++K F + P A +K R FVHF++R A+ A+
Sbjct: 231 KILYVRNLMLPTTEETIEKEFNS-------IKPGAVERVKKIRDYAFVHFSQREDAINAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 284 NALNGKVIDGSPIEVTLAKP 303
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 139 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 198
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 199 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 258
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 259 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 318
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 319 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 370
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 371 EMNGKEIEGEEIEIVLAKP 389
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 139/260 (53%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF + A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSTKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY H+ A +R+K+ +L + V WA+P VD + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL T++ ++K F + P A +K R FVHF++R A+ A+
Sbjct: 231 KILYVRNLMLPTTEETIEKEFNS-------IKPGAVERVKKIRDYAFVHFSQREDAINAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 284 NALNGKVIDGSPIEVTLAKP 303
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 133/257 (51%), Gaps = 11/257 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEAAQLAI 118
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
LNN E + GK I S RLFIG IP+ E++ + V GV V +
Sbjct: 119 RILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNVTEGVVDVIVYPSAT 178
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAV 278
+ S NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +
Sbjct: 179 DKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVL 238
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNT 337
YV+NL + T++ +K F P A +K R FVHF R AM A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNRDDAMTAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG +E +LAKP
Sbjct: 292 NGKYIDGAGIEVTLAKP 308
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 144 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 203
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 204 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 263
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 264 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 323
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 324 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 375
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 376 EMNGKEIEGEEIEIVLAKP 394
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 135 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 194
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 195 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 254
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 255 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 314
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 315 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 366
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 367 EMNGKEIEGEEIEIVLAKP 385
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L IG++ E+R+M S N+G+AFV + E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 156 ASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
KA+ +LNN E KG+ + S RLF+G IP+N E++ +++V V V +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ + + NRGFAF+EY NH+ A +R+K+ +L + V WA+P ++VD
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL + T++ + K F G + +V ++ F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+ + LDG +E LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 292 EMNGKEIEGEEIEIVLAKP 310
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF + A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 292 EMNGKEIEGEEIEIVLAKP 310
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 291
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 292 EMNGKEIEGEEIEIVLAKP 310
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 148/273 (54%), Gaps = 11/273 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GEVTEVR+M + +NKGFAF+ F VE A +A+ +
Sbjct: 33 EVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKNS 221
L N GK+ + SQ LF+GNI + W E L++ + G V + LV+D N+
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNA 152
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVKAV 278
NRGFAF+E+ + A + +++ + G + P VS+AD +D +QVK V
Sbjct: 153 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS-FIDPGDEIMAQVKTV 211
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALK 335
++ LP + +D+++ L + +G I K+ + P + GFV F +A+ K++
Sbjct: 212 FIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDAAVTCAKSIN 271
Query: 336 NTEKYELDGQA-LECSLAKPQADQKSAGGSVSE 367
N E E D +A + L++P Q+ G +S
Sbjct: 272 NAELGEGDNKAKVRARLSRPL--QRGKGKHLSR 302
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 144/263 (54%), Gaps = 22/263 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
E+YIG IP E L + G++ ++R+M S NKG+AFVT+ + A++A
Sbjct: 214 CEIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAK 273
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
K E K GK++R + S A RLF+GNIP++ G ED+ + S+ V+GV+ + D+
Sbjct: 274 KFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSK----VSGVQNITDVIM 329
Query: 221 SSN--------NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSG 271
SN NRGF F+E+ +HK A +++++ + F+ V WA+ + +VD
Sbjct: 330 YSNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKET 389
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
S+VK +Y++ L +V++++L+ F +G + +V + FVHFAER A
Sbjct: 390 MSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV--------KRIKDYAFVHFAEREQAE 441
Query: 332 KALKNTEKYELDGQALECSLAKP 354
KA++ + E DG E S AKP
Sbjct: 442 KAIEAMKGQEFDGVPCEVSFAKP 464
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 156/320 (48%), Gaps = 42/320 (13%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G + E R+M + S EN+G+AFV + E A +AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 104
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E + GK I S RLFIG+IP++ E++Q+ + +V GV V + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGFAF+EY +HK A +R+K+ F+L + V WA+P + +D +V+ +YV
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 224
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ L+ F KPG ++ F+HF R A+ AL+
Sbjct: 225 RNLMLSTTEETLRSEFSQ-----------LKPGSVERVKKLTDYAFIHFYNREDALTALE 273
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGG--------- 386
+ +DG +E +LAKP S G+ P N G AGG
Sbjct: 274 SMNGKVIDGSPIEVTLAKP----ASKDGNKRFGPRNCHN-----GVTAAGGYGDSNFLFR 324
Query: 387 -----TYGALGAGFGAAAFA 401
T GA+G G A A +
Sbjct: 325 TRNDMTIGAMGNGLNAHALS 344
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 145/285 (50%), Gaps = 23/285 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + N E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPLFERAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG+IP+ ED+ + + +V GV V + +
Sbjct: 120 MLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKVTEGVMDVIVCPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+ Y +H+ A +R+K+ F+L V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKEVDEETMQKVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F + KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 335 KNTEKYELDGQALECSLAKP----QADQKSAGGSVSEKPSLLQNY 375
+DG +E +LAKP A +++ G ++ L N+
Sbjct: 289 SEMNGRLIDGARIEVTLAKPVNKEAAWRQNGNGHMNPNSECLLNF 333
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 156/320 (48%), Gaps = 42/320 (13%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G + E R+M + S EN+G+AFV + E A +AI
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 117
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E + GK I S RLFIG+IP++ E++Q+ + +V GV V + +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 177
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGFAF+EY +HK A +R+K+ F+L + V WA+P + +D +V+ +YV
Sbjct: 178 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 237
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ L+ F KPG ++ F+HF R A+ AL+
Sbjct: 238 RNLMLSTTEETLRSEFSQ-----------LKPGSVERVKKLTDYAFIHFYNREDALTALE 286
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGG--------- 386
+ +DG +E +LAKP S G+ P N G AGG
Sbjct: 287 SMNGKVIDGSPIEVTLAKP----ASKDGNKRFGPRNCHN-----GVTAAGGYGDSNFLFR 337
Query: 387 -----TYGALGAGFGAAAFA 401
T GA+G G A A +
Sbjct: 338 TRNDMTIGAMGNGLNAHALS 357
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 145/275 (52%), Gaps = 24/275 (8%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM-------------TNPNFKLGTNAPTVSW 261
+ + NRGFAF+EY +H+ A +R+K+ T +L + V W
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHPIAVDW 228
Query: 262 ADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-I 319
A+P VD S VK +YV+NL + +++ ++K F + + P A +K R
Sbjct: 229 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDY 281
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
FVHF+ R A++A+K LDG +E +LAKP
Sbjct: 282 AFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 142/260 (54%), Gaps = 14/260 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEARNA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIG-NIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
I +LNN E + G+ + S RLF+G + P+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKVTDGVVDVIVYPS 172
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 AADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVK 232
Query: 277 AVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
+YV+NL + T++ ++K F + G + +V ++ FVHF +R A+ A+
Sbjct: 233 ILYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVDAM 284
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 285 KALNGKVLDGSPIEVTLAKP 304
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L IG++ E+R+M S N+G+AFV + E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 156 ASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
KA+ +LNN E KG+ + S RLF+G IP+N E++ +++V V V +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ + + NRGFAF+EY NH+ A +R+K+ +L + V WA+P ++VD
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL + T++ + K F G + +V ++ F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+ + LDG +E LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 13/263 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G EV++G IP D E +L IG++ E+R+M S N+G+AFV + E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 156 ASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
KA+ +LNN E KG+ + S RLF+G IP+N E++ +++V V V +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGAS 273
+ + + NRGFAF+EY NH+ A +R+K+ +L + V WA+P ++VD
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VK +YV+NL + T++ + K F G + +V ++ F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A+ + LDG +E LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 151/273 (55%), Gaps = 9/273 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA E D+R +G+V +VR+ K ++ NKGFAFV F E S+A+ +
Sbjct: 512 EIFVGGLNRDAVEEDIRSVFGQVGDVVDVRLHKDLLTNRNKGFAFVKFATKEQVSRALAE 571
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKNS 221
+ N +GK+ + S+ LF+GNI W E ++K + + G GV + LV D +N
Sbjct: 572 MKNPMIRGKRCGIAASEDNDTLFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNE 631
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGFAF+E+ H A + +++ P+ G T V++A+P + D+ +QVK+V
Sbjct: 632 GQSRGFAFLEFSCHADAMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMAQVKSV 691
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP +D++K F+ +G I +VV+ ++N GFV+F+ +A+ ++ T
Sbjct: 692 FIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEATN 751
Query: 339 KYEL--DGQA---LECSLAKPQADQKSAGGSVS 366
EL DG++ + L+ P ++ G ++
Sbjct: 752 NTELGDDGKSKVKVRVRLSNPLPKSQAVKGGMT 784
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 19/316 (6%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
GSE+++G +P D E +L C+ G++ EVR+M + + N+G+AFVTF N + A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGN-NRGYAFVTFSNKQEAKTA 113
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLF+G IP+ +++ + +V GV V +
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGVVDVIVYPSA 173
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L V WA+P VD + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMATVKI 233
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN 336
+YV+NL T++ +++ F + P A +K R FVHF +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEREFNS-------LKPGAVERVKKIRDYAFVHFCQREDAINAMNA 286
Query: 337 TEKYELDGQALECSLAKPQADQKS----AGGSVSEKPSLLQNYPPHIGYGLAGGTYGALG 392
++G +E +LAKP D+ S G+ SLLQ + Y L G Y
Sbjct: 287 LNGKLVEGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSSLLQT--DYTAYTL-GQVYDPSA 342
Query: 393 AGFGAAAFAQTTVWSS 408
A GA F +++
Sbjct: 343 AYLGAPVFYAPQAYTA 358
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 145/264 (54%), Gaps = 14/264 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+EV+IG IP D E +L + GE+ E R+ + NKGFAF TF A +AI
Sbjct: 109 GTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTKQTSAYQAI 168
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
LN+ + + G+++ S++ RLF+ IP+ E++ + S+V + V + +
Sbjct: 169 TTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDLQDVIVYQSCD 228
Query: 220 NSSN---NRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADPRNV-DSSGASQ 274
++ NRGF F+EY N+ + + T+ ++ G V+WA+ R + D + S+
Sbjct: 229 QGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTWAEAREIPDYAVMSK 288
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
VK++YV+N+P +++ QLK +F +G+I KV ++ GFV+FA+R SA++A+
Sbjct: 289 VKSIYVRNVPLPMSETQLKAVFTKYGQIEKV--------RKIRDYGFVYFAKRESAVQAI 340
Query: 335 KNTEKYELDGQALECSLAKPQADQ 358
+DG LE SLA PQ+ +
Sbjct: 341 DGINGAYIDGCKLEVSLAIPQSSR 364
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 160/295 (54%), Gaps = 11/295 (3%)
Query: 83 EDEDEKKKHAELLALPPHGSE--VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
E+EDE+K +++ E +++GG+ +A E D+R +G+V EVR+ K +S
Sbjct: 223 ENEDERKVMSDMAKNRQRKKELEIFVGGLDREAVEEDIRKVFSQVGDVVEVRLHKDFSTS 282
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQK 200
+NKGFAFV F N E ++A+ ++ N GK+ + S+ LF+ NI W E ++K
Sbjct: 283 KNKGFAFVRFANKEQVARALAEMKNPMIHGKRCGVAASEDNDTLFLCNICNTWTKEAIKK 342
Query: 201 VVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT- 258
+ + G GV + LV D +N +RGFAF+E+ H A + +++ P+ G T
Sbjct: 343 RLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDALFGHPERTA 402
Query: 259 -VSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
V++A+P + D+ +QVK+V++ LP ++++K F+ +G I +VV+ ++
Sbjct: 403 KVAFAEPIKEADAEVMAQVKSVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKR 462
Query: 317 NRIGFVHFAERSSAMKALKNTEKYEL--DGQA---LECSLAKPQADQKSAGGSVS 366
N GFV+F+ A+ ++ T EL DG+A + L+ P ++ G +S
Sbjct: 463 NDFGFVNFSTHEEALACIEATNNTELGDDGKAKLKVRVRLSNPLPKSQAVKGEMS 517
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 37 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 95
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 96 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 155
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 156 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 215
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 216 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 268
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 269 KALNGKVLDGSPIEVTLAKP 288
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 14/242 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+IG +P D E +L +++G + E+R+M S N+G+AF T+ N E A
Sbjct: 61 PQRGCEVFIGKLPRDFFEDELVPLLETVGPIYELRLMMDFAGS-NRGYAFATYTNREDAR 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L+ E + GK+I S RLF+G IPR ED+ +S V GV V L
Sbjct: 120 RAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYT 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT-NAPTVSWADPR-NVDSSGASQ 274
+ + + NRGFAF+EY +HK A +R+KM KL + V WA+P VD S+
Sbjct: 180 SVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDEDTMSK 239
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
V +YV+NL + T+D+L+++F +G +++KV ++ F+H+ R A
Sbjct: 240 VMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV--------KKIRDFAFIHYRSREEATT 291
Query: 333 AL 334
AL
Sbjct: 292 AL 293
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 19/262 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ G++ E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMDFNGN-NRGYAFVTFTNRQDARDA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKVTDGVLDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ----EKNR-IGFVHFAERSSAMK 332
+YV+NL ++ ++K F KPG +K R FVHF R+ A+
Sbjct: 233 LYVRNLMLTTAEETIEKEFSS-----------VKPGSVERVKKIRDYAFVHFRNRADAVD 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ +DG +E +LAKP
Sbjct: 282 AMNVLNGKIIDGSPIEVTLAKP 303
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N +
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 164/315 (52%), Gaps = 21/315 (6%)
Query: 39 MEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALP 98
+EE YE + +E+++ E +E + E D DA + + D ++KH L
Sbjct: 8 IEERYE----DHDEDKDGYLEGSKESLSGEAVDYDAEAQHPLPLSD---RRKHKRL---- 56
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
EVY+GG+ D +E DL+ + GEV E+R+M+ + +NKGFAF+ + + +A +
Sbjct: 57 ----EVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFAFIRYASAAMAKR 112
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKD 217
A + E +G++ S+ L +GNI ++W E + + + + + + L++D
Sbjct: 113 ATEDFETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMED 172
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT-NAPTVSWADP-RNVDSSGASQV 275
+ NRGFAFIE+ HK A + +K+ P+ GT + V+WA P D SQV
Sbjct: 173 PQVEGVNRGFAFIEFSTHKDALDAFRKLQQPDAIFGTERSAKVAWAQPLYEPDEDTMSQV 232
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK--- 332
K+V+V +P + +++ F +G I ++V+ ++ GFV++ ER++A+
Sbjct: 233 KSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCID 292
Query: 333 ALKNTEKYELDGQAL 347
AL NTE + D + L
Sbjct: 293 ALNNTEIIDGDMKVL 307
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 142/255 (55%), Gaps = 18/255 (7%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+EV++GG+P A+E LR+ GE+ ++RIMK ++ +KGF FV F E A A
Sbjct: 69 GTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGV-SKGFGFVRFAERECAYTAK 127
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL--VKDM 218
+ N E +GK++ S + LF GN+ + W E+ ++++ + V V+L ++
Sbjct: 128 RQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNL 187
Query: 219 KNSSN----NRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADP-RNVDSSGA 272
+S++ NRGFAF+ + +H A + + +F L G P ++WA+ NVD+
Sbjct: 188 DSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPAINWAERESNVDAGEM 247
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
+++K +V NLP NV +D LKKLF G + +V V ++ G+ +GF+HF RS
Sbjct: 248 AKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--SRKGEYP--VGFIHFGSRSELDN 303
Query: 333 ALKNTEKYELDGQAL 347
A+K E+DG+ +
Sbjct: 304 AIK-----EMDGKTV 313
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
V ++G + V+V LPR+ T+ L+++F G I + + + G K GFV FAE
Sbjct: 61 VCAAGRVKGTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGVSKG-FGFVRFAE 119
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKPQ 355
R A A + EL G+ L L+ Q
Sbjct: 120 RECAYTAKRQKNGIELQGKRLAVDLSLDQ 148
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 140/257 (54%), Gaps = 13/257 (5%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+ F + +
Sbjct: 161 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDA 220
Query: 156 ASKAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A++A+ +N E + +K + S A RLF+G+IP+N E + S+V G+ V L
Sbjct: 221 AAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKVTEGLQEVIL 280
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP---RNVDSSG 271
+ NRGF F+EY +HK A +R+ + + + N TV WA+P R+ D
Sbjct: 281 YHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERDTDVM- 339
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
A+Q K ++V+ L +VT++ L K F G++ +V + FVHF +R +A+
Sbjct: 340 ANQAKVLFVRKLATSVTEELLVKTFSAFGKLERVY--------KLKDYAFVHFEDRDAAV 391
Query: 332 KALKNTEKYELDGQALE 348
KA+ + EL G+A+E
Sbjct: 392 KAMVDMNGKELGGEAIE 408
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 190/392 (48%), Gaps = 49/392 (12%)
Query: 27 VDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVE--------EEVEEEEEDADAGKSG 78
VD+DE + E EE+YE + E E+VIEEE + + E E +A +
Sbjct: 111 VDYDEKD--LEQYEEQYEDGDEVVEYTEDVIEEETDMVDEELDGGDDGEGEGYENAEEEH 168
Query: 79 DMQIEDED------EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
++ +EDE+ E +K E EV++GG+ DA+E DLR +GE+TEVR
Sbjct: 169 NVDVEDEEHHEMVKEHRKRKEF--------EVFVGGLDKDATESDLRKVFGEVGEITEVR 220
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRN 192
+M + +NKGFAF+ + VE A +A+ +L N +GK+ + S LF+GNI +
Sbjct: 221 LMMNPVTKKNKGFAFLRYATVEQARRAVSELKNPSVRGKQCGVAPSHDNDTLFVGNICKT 280
Query: 193 WGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251
W E L++ + G + LV+D N NRG+A +E+ A + +++ +
Sbjct: 281 WTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVV 340
Query: 252 LGTN-APTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309
G + + VS+AD VD +QV+ V++ LP + +D++KK + +G I KV +
Sbjct: 341 FGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELAR 400
Query: 310 AKPGQEKNRIGFVHFAERSSAM---KALKNTEKYELDGQA-LECSLAKPQADQKSAGGSV 365
P ++ GFV F +A+ + N+E E D +A + L++P
Sbjct: 401 NMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRP----------- 449
Query: 366 SEKPSLLQNYPPHIGYGLAGGTYGALGAGFGA 397
LQ PP + +GL G GA G
Sbjct: 450 ------LQR-PPRMKHGLRGNFRVGQGAPRGG 474
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 155/288 (53%), Gaps = 13/288 (4%)
Query: 91 HAELLALP-----PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
H EL A+ E+++GG+ DA E D++ + IGEV EVR+ K S++NKG+
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV 205
AFV F N E AS+A+ ++ N GK+ + S+ LF+GNI W E +++ + +
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 206 G-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWA 262
G GV + LV + ++ +RGFAF+E+ H A + +++ P+ G T V++A
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 263 DP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+P R D +QVK+V+V LP + +D++++ F+ +G I ++V+ ++ GF
Sbjct: 490 EPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGF 549
Query: 322 VHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKPQADQKSAGGSV 365
V F +A+ + + EL DG + ++ L+ P ++ G +
Sbjct: 550 VDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGL 597
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 155/288 (53%), Gaps = 13/288 (4%)
Query: 91 HAELLALP-----PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
H EL A+ E+++GG+ DA E D++ + IGEV EVR+ K S++NKG+
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV 205
AFV F N E AS+A+ ++ N GK+ + S+ LF+GNI W E +++ + +
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 206 G-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWA 262
G GV + LV + ++ +RGFAF+E+ H A + +++ P+ G T V++A
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 263 DP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+P R D +QVK+V+V LP + +D++++ F+ +G I ++V+ ++ GF
Sbjct: 490 EPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGF 549
Query: 322 VHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKPQADQKSAGGSV 365
V F +A+ + + EL DG + ++ L+ P ++ G +
Sbjct: 550 VDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGL 597
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 360 EIEGEEIEIVLAKP 373
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 145/286 (50%), Gaps = 25/286 (8%)
Query: 82 IEDEDEKKKHAELLALPPH--------GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
I+ E+ ++K+ PPH G EV++G +P D E +L + G + E+R+
Sbjct: 77 IKQENGQRKYG---GPPPHWNDVIPGKGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRL 133
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRN 192
M + + N+GFAFV + A A+ LNN E KG+ + S RLF+G IP+
Sbjct: 134 MMDFNGN-NRGFAFVKYCAASEARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKT 192
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
E++ + +V GV V + + NRGFAF+EY +H A +R+K+ + ++
Sbjct: 193 KQKEEILIEMKKVTEGVCDVIVYPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQI 252
Query: 253 GTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH---HGRITKVVVP 308
+ V WA+P VD + VK +YV+NL N T++QL+ F G I +V
Sbjct: 253 WGHPIAVDWAEPEVEVDDDIMATVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERV--- 309
Query: 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
++ GFVHF R +A+K LK LDG +E +LAKP
Sbjct: 310 -----KKIRDYGFVHFNTRENAIKCLKQLNGKILDGSPMEVTLAKP 350
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 142/260 (54%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 360 EIEGEEIEIVLAKP 373
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 360 EIEGEEIEIVLAKP 373
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV---GPGVTGVE 213
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP D
Sbjct: 281 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 340
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+K
Sbjct: 341 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 392
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ E++G+ +E LAKP
Sbjct: 393 AMDEMNGKEIEGEEIEIVLAKP 414
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 142/260 (54%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 360 EIEGEEIEIVLAKP 373
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 167 EFKGKKIRCSTS---QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
E +G +++ ST +AK ++F+G IPR+ ++L + + GP + + L+ D S
Sbjct: 109 EKQGSRVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD-PLSGQ 166
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDSSGASQVKAVYVKN 282
NRG+AFI + + A+ + + + + G + +S A+ R ++V +
Sbjct: 167 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 214
Query: 283 LPRNVTQDQLKKLFEHHGRITK----VVVPPAKPGQEKNR-IGFVHFAERSSAMKALK 335
+P+N T++ + E ++T+ V++ ++KNR F+ + + SA +A +
Sbjct: 215 IPKNKTKEN---ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 269
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV---GPGVTGVE 213
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP D
Sbjct: 281 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 340
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+K
Sbjct: 341 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 392
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ E++G+ +E LAKP
Sbjct: 393 AMDEMNGKEIEGEEIEIVLAKP 414
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 148/272 (54%), Gaps = 11/272 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GEVTEVR+M + +NKGFAF+ F VE A +A+ +
Sbjct: 233 EVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 292
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L N GK+ + SQ LF+GNI + W E L++ + G V + LV+D N
Sbjct: 293 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDSSG--ASQVKAV 278
NRGFAF+E+ + A + +++ + G + VS+AD +D +QVK V
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVSFAD-SFIDPGDEIMAQVKTV 411
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALK 335
++ LP + +D++++L + +G I K+ + P ++ GFV F +A+ K++
Sbjct: 412 FIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 471
Query: 336 NTEKYELDGQA-LECSLAKPQADQKSAGGSVS 366
N E E + +A + L++P Q+ G +S
Sbjct: 472 NAELGEGENKAKVRARLSRPL--QRGKGKHIS 501
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 360 EIEGEEIEIVLAKP 373
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 142/260 (54%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 11/256 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 75 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 133
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 134 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 193
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 253
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTE 338
V+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 254 VRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAMSVMN 306
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 307 GKCIDGASIEVTLAKP 322
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKFIDGASIEVTLAKP 308
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 15/261 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP E+YIG IPHDA E +L Q+ G++ E+R+M S N+G+AF+++ E A+
Sbjct: 31 PPQDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAAN 90
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+ + + + K K + S RLFI IP+ E++ S++ G+T V +
Sbjct: 91 QCVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLSDGLTEVIVYP 150
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA----DPRNVDSSGA 272
D RGFAF+EY +HK A Y+R+K+ L V WA +P+ D
Sbjct: 151 DPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKEPK--DHVVG 208
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK VY N+ ++T+D L F +G I ++ ++ + F+ FA R SA+K
Sbjct: 209 NKVKEVYCGNIAEHITEDTLNTAFLQYGSIERI--------KKLHDYAFICFASRESALK 260
Query: 333 ALKNTEKYELDGQALECSLAK 353
A++ ++G ++ LAK
Sbjct: 261 AIEGVRGTVINGCKVDVQLAK 281
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 22/267 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L + IG + R+M + + N+G+ F + N E
Sbjct: 98 PPRGCEVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMM-EFNGTNRGYGFCVYTNREDTK 156
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ L+N E KGK I S RLF+G IP+N E++ + V GV V
Sbjct: 157 KAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRVTEGVKDVISYP 216
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + S NRGFAF+EY +HK A +R+K+ +L V WA+P R V+ S+V
Sbjct: 217 SVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPEREVNEDIMSKV 276
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHG--------RITKVVVPPAKPGQEKNRIGFVHFAER 327
K +YV+NL + T+D L++ F R+ K+ + F+HF ER
Sbjct: 277 KILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKI-----------SDYAFIHFKER 325
Query: 328 SSAMKALKNTEKYELDGQALECSLAKP 354
A + L+ +DG +E + AKP
Sbjct: 326 EQAARCLEALNDTLIDGSKIEVTWAKP 352
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 138/267 (51%), Gaps = 17/267 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV+IG IP D E +L + G V + R+M + +N+G+AF++F + A
Sbjct: 164 PAVGAEVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAAR 223
Query: 158 KAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
K ++ + E + K+ + + SQ RLF+G+IP+ +++ S+ G+T V L
Sbjct: 224 KCVEMYDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYY 283
Query: 217 DM--KNSSN----NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDS 269
+ KN + NRGF F+EY H+ A +R+++ + K N TV WADP N +
Sbjct: 284 QVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTPA 343
Query: 270 SG-ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+VK +YVKNL V++D + + F G I KV ++ FVHF R
Sbjct: 344 DDIMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV--------KKLKDYAFVHFKNRD 395
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQ 355
A A+ + L+GQ +E LAKPQ
Sbjct: 396 EARSAMTELNGFNLEGQCIEICLAKPQ 422
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGSVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 11/256 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTE 338
V+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 134/259 (51%), Gaps = 19/259 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNRDDAVAAMS 289
Query: 336 NTEKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 290 VMNGKCIDGASIEVTLAKP 308
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 230
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 231 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 290
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 291 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 342
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 343 EIEGEEIEIVLAKP 356
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 11/256 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTE 338
V+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 138 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 197
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV---GPGVTGVE 213
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V
Sbjct: 198 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 257
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP D
Sbjct: 258 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 317
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+K
Sbjct: 318 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 369
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ E++G+ +E LAKP
Sbjct: 370 AMDEMNGKEIEGEEIEIVLAKP 391
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 11/256 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTE 338
V+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G +P D E +L ++IG++ EVR+M S N+G+AFV + N E A
Sbjct: 53 PQRGCEVFVGKLPRDLYEDELVPVFETIGKIYEVRLMM-DFSGSNRGYAFVMYTNKEDAK 111
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E KG+ + S RLF+G IP+N ++ + +S+V GV V +
Sbjct: 112 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYP 171
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA-DPRNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA VD +V
Sbjct: 172 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEPEVDEEVMRKV 231
Query: 276 KAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
K +YV+NL T+D +K+ FE +T+V ++ FVH+ R A+ A
Sbjct: 232 KVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV--------KKIRDYAFVHYKTREDAIAA 283
Query: 334 LKNTEKYELDGQALECSLAKP 354
+ L+G LE + AKP
Sbjct: 284 MTAMNGSTLEGAKLEVTFAKP 304
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGTVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 19/260 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 287 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 345
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 346 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 405
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 465
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 466 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 514
Query: 335 KNTEKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 515 SVMNGKCIDGASIEVTLAKP 534
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 146
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V
Sbjct: 147 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 206
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 207 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 258
Query: 341 ELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 259 EIEGEEIEIVLAKP 272
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 167 EFKGKKIRCSTS---QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
E +G K++ ST +AK ++F+G IPR+ ++L + + GP + + L+ D S
Sbjct: 8 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD-PLSGQ 65
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDSSGASQVKAVYVKN 282
NRG+AFI + + A+ + + + + G + +S A+ R ++V +
Sbjct: 66 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 113
Query: 283 LPRNVTQDQLKKLFEHHGRITK----VVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN- 336
+P+N T++ + E ++T+ V++ ++KNR F+ + + SA +A +
Sbjct: 114 IPKNKTKEN---ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRL 170
Query: 337 -TEKYELDGQALECSLAKP 354
+ K ++ G + A P
Sbjct: 171 MSGKVKVWGNVVTVEWADP 189
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEV---GPGVTGVE 213
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 179
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGA 272
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP D
Sbjct: 180 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 239
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+K
Sbjct: 240 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 291
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ E++G+ +E LAKP
Sbjct: 292 AMDEMNGKEIEGEEIEIVLAKP 313
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 2/210 (0%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKV 305
K ++V+NL VT++ L+K F G++ +V
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 238 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 296
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 297 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 356
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 357 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 416
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 417 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 468
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 469 GKCIDGASIEVTLAKP 484
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAIDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKFIDGASIEVTLAKP 308
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 136/259 (52%), Gaps = 20/259 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELA 156
P G EV++G IP D E++L Q++G V E+R+M D++E N+GFAFVTF A
Sbjct: 23 PSKGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMM--DTNETNRGFAFVTFATPADA 80
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
KAI KLN E + G+ I S RLFIG IP++ E++ K +S + GV V L
Sbjct: 81 GKAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRITEGVVRVILY 140
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA-SQ 274
+ + NRGFAFIEY +H+ A +R+K L V WA+P V S+
Sbjct: 141 SSVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAEPEPVVEEEILSK 200
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
V+ +YV+NL + +L++LF+ +G + KV + N F+HF RS A +
Sbjct: 201 VRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKI--------LNDFAFIHFGSRSQAQQ 252
Query: 333 ALKNTEKYELDGQALECSL 351
A+ L G + C L
Sbjct: 253 AMD-----ALQGIRVSCML 266
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 134/243 (55%), Gaps = 11/243 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALK 335
A+K
Sbjct: 282 AMK 284
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 135/274 (49%), Gaps = 55/274 (20%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNV 153
L+LPPHG+EV+IGG+P +E LRDF G+V +++K ++ S+N+G+ F+ F
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAGDVHSAKLIKDPNNPSQNRGYGFIKFYTK 72
Query: 154 ELASKAIDKLNNTE---FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
E A A+D+L++ E F ++R SQAK++LFIG IP E+L+ ++ +
Sbjct: 73 EAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREELKDMLDPI----- 127
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-- 268
VK +G PTV +A+P D
Sbjct: 128 ----VKGEAGGLAGG-------------------------GIGEKQPTVDYAEPSQRDGG 158
Query: 269 ---------------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
G VK V+V NLP T+D+L+ +F +G + + +P + G
Sbjct: 159 GGGGGGGGGGGGGGGGGGGGGVKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDG 218
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
++ GFVHF ER++AM+A+++ EK ELDG L
Sbjct: 219 DTHSKYGFVHFRERAAAMRAVEDVEKPELDGGLL 252
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 134/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + +D +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTAEDTIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSIMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 136/263 (51%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF + E A
Sbjct: 158 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK+I S A RLF+G+IP++ E + + S+V G++ V L
Sbjct: 218 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
++ S NRGF F+EY +HK A+QVK
Sbjct: 278 QPQDKSKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL +VT++ L+K F +G + +V ++ F+HF ER A+KAL+
Sbjct: 304 VLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 356 MNGKELEGEPIEIVFAKP-PDQK 377
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 15/274 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +G VTEVR+M + +NKGFAF+ F VE A +A+ +
Sbjct: 233 EVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 292
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE---LVKDMK 219
L N GK+ + SQ L++GNI + W E L++ + GVT VE LV+D
Sbjct: 293 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHY--GVTNVEDLTLVEDTN 350
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG--ASQVK 276
+ NRGFAF+E+ + A + +++ + G + P VS+AD +D +QVK
Sbjct: 351 DEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPAKVSFAD-SFIDPGDEIMAQVK 409
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK---A 333
V++ LP + +D ++ L +G I K+ + P + GFV F +A+K +
Sbjct: 410 TVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADS 469
Query: 334 LKNTEKYELDGQA-LECSLAKPQADQKSAGGSVS 366
+ TE E D +A + L++P Q+ G +S
Sbjct: 470 ITGTELGEGDKKAKVRARLSRPL--QRGRGKHIS 501
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 14/280 (5%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
M+ E+ K + L P G+E++IG +P D E +L +S G E+R+M +
Sbjct: 53 MKQENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPAFELRMMLDFNG 112
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDL 198
+ N+GF FVT++ + A+ +NN E KG+ + S RLF+G IP++ +++
Sbjct: 113 N-NRGFCFVTYQTRNESHAALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEI 171
Query: 199 QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258
+ + +V GV V + + S NRGF+F+EY +HK A +R+K+ +L +
Sbjct: 172 MEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIA 231
Query: 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH---HGRITKVVVPPAKPGQ 314
V WA+P V+ S VK +YV+NL + ++D L+ F G I +V +
Sbjct: 232 VDWAEPEIEVEESVMETVKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERV--------K 283
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
+ FVHF R +A+KA+K +DG +E LAKP
Sbjct: 284 KIRDYAFVHFNTRDNALKAMKELNNGMIDGALVEVVLAKP 323
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + G+ I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 143/266 (53%), Gaps = 7/266 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ D +E DL F + +G++TEVR+MK + +NKGFAF+ F VE A +A+++
Sbjct: 126 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 185
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GK+ + SQ LF+GNI + W ++ ++ G + LV+D KN
Sbjct: 186 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 245
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPR-NVDSSGASQVKAVY 279
NRGFAF+++ + A + +++ + GT+ V++AD D SQV+ ++
Sbjct: 246 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIF 305
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP +D+++ + GRI K+ + P ++ GFV F SA+ + +
Sbjct: 306 LDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINN 365
Query: 340 YEL-DGQAL---ECSLAKPQADQKSA 361
EL DG+ L L++P+ KSA
Sbjct: 366 SELVDGERLVKVRARLSRPRQRGKSA 391
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 141/258 (54%), Gaps = 14/258 (5%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
E++KH +L EV++GG+ + +E +L +G+V EVR+MK + +NKG+A
Sbjct: 11 ERRKHKKL--------EVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYA 62
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
F+ F + +A +A L E +G+ S+ LF+GNI + W E + + + +
Sbjct: 63 FIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFA 122
Query: 207 -PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADP 264
V + L++D + NRGFAFIE++ HK A + +++ + GT+ + ++WA P
Sbjct: 123 IENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGTDRSAKIAWAQP 182
Query: 265 RN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
N D SQVK+V+V +P + ++K+LF +G + ++V+ ++ GFV+
Sbjct: 183 LNEPDEDIMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVN 242
Query: 324 FAERSSAM---KALKNTE 338
+ ER +A+ AL NTE
Sbjct: 243 YVERDAALLCIDALNNTE 260
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ G+P E +++ G V + + + S++ K F FV + + A ID L
Sbjct: 197 VFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFVNYVERDAALLCIDAL 256
Query: 164 NNTEFKGKKIRC 175
NNTE + I+
Sbjct: 257 NNTEISYEDIKV 268
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 143/266 (53%), Gaps = 7/266 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ D +E DL F + +G++TEVR+MK + +NKGFAF+ F VE A +A+++
Sbjct: 187 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 246
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GK+ + SQ LF+GNI + W ++ ++ G + LV+D KN
Sbjct: 247 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 306
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPR-NVDSSGASQVKAVY 279
NRGFAF+++ + A + +++ + GT+ V++AD D SQV+ ++
Sbjct: 307 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIF 366
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP +D+++ + GRI K+ + P ++ GFV F SA+ + +
Sbjct: 367 LDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINN 426
Query: 340 YEL-DGQAL---ECSLAKPQADQKSA 361
EL DG+ L L++P+ KSA
Sbjct: 427 SELVDGERLVKVRARLSRPRQRGKSA 452
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 144/264 (54%), Gaps = 14/264 (5%)
Query: 96 ALPP-HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A PP G E++IG +P D E +L C+ IG++ E+R+M + N+G+AFVTF N +
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFNGNNRGYAFVTFSNKQ 107
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVI 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
+ + + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
S VK +YV+NL + +++ ++K F G + +V ++ FVHF+ R A
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV--------KKIRDYAFVHFSNREDA 279
Query: 331 MKALKNTEKYELDGQALECSLAKP 354
++A+K LDG +E +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 11/261 (4%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA+E DLR +GEVTE R+M + +NKGFAF+ F VE A +A+ +
Sbjct: 33 EIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKNS 221
L N GK+ + SQ LF+GNI + W E L++ + G V + LV+D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNL 152
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG---ASQVKA 277
NRGFAF+E+ + A + +++ + G + P VS+AD + G +QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVDRPAKVSFAD--SFIGPGDEIMAQVKT 210
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KAL 334
+++ LP + +D+ + L + +G I K+ + P + GFV F +A+ K++
Sbjct: 211 LFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDAAVACAKSI 270
Query: 335 KNTEKYELDGQA-LECSLAKP 354
N E E D + + L++P
Sbjct: 271 NNVELGEGDNKVKVRARLSRP 291
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 13/288 (4%)
Query: 64 EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGS-------EVYIGGIPHDASEH 116
E EE +ED D G ++ D + AE P EVY+GG+ D +E
Sbjct: 7 EKEEHDEDRDGYLEGSKELLSGDGAEYDAEAQHSLPFSERRKYKRLEVYVGGLDKDTTEE 66
Query: 117 DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176
DL+ + GEV EVR+M+ + +N+G+AFV + + +A +A ++L E +G++
Sbjct: 67 DLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEELGTIEIRGRECTAK 126
Query: 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
S+ L +GNI ++W E + + + + + + L++D + NRGFAFIE+ H
Sbjct: 127 PSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVEGLNRGFAFIEFSTH 186
Query: 236 KCAEYSRQKMTNPNFKLGTN-APTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293
K A + +K+ P+ G + + V+WA P D SQVK+V+V +P + ++
Sbjct: 187 KDALEAFRKLQQPDAIFGADRSAKVAWAQPLYEPDEDTMSQVKSVFVDGMPPTWEEVNVR 246
Query: 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALKNTE 338
+ F +G I ++V+ ++ GFV+F ER +A+ AL NTE
Sbjct: 247 EHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDALNNTE 294
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E L G++ E R+M + S EN+G+AFV + N E A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 162 KLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E +GK I S RLFIG+IP+ E++ + + +V GV V + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+ Y +H+ A +R+K+ F+L + V+WA P + VD +VK +Y
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEETMQKVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F + KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 335 KNTEKYELDGQALECSLAKP----QADQKSAGGSVSEKPSLLQNY 375
+DG +E +LAKP A +++ G ++ L N+
Sbjct: 289 SVMNGRLIDGARIEVTLAKPVNKEAAWRQNGNGHMNANSECLLNF 333
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 192/389 (49%), Gaps = 42/389 (10%)
Query: 27 VDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEE---VEEEVEEEEEDADA----GKSGD 79
VD+DE + E EE+YE + E E E+V+E E V+EE++E +D + D
Sbjct: 132 VDYDEKD--LEQYEEQYEDGDEEVEYTEDVVEVETDMVDEELDEGGDDVEGEGYENADED 189
Query: 80 MQIEDEDEKKKHAELLALPPHGS----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK 135
++ +DE +H E++ H E+++GG+ DA+E+DL +GE+TEVR+M
Sbjct: 190 HHVDGDDE--EHNEMVK--EHRKRKEFEIFVGGLDKDATENDLMKVFGEVGEITEVRLMM 245
Query: 136 GKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGS 195
+ +NKGFAF+ + VE A +A+ +L N +GK+ + S LF+GNI + W
Sbjct: 246 NPVTKKNKGFAFLRYATVEQARRAVSELKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTK 305
Query: 196 EDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254
E L+ + G + L +D N NRG+A +E+ A + + + + G
Sbjct: 306 EHLKDKLKSYGVESFDDLLLAEDTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGV 365
Query: 255 N-APTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+ + VS+AD VD +QV+ V++ LP + +D++KK + +G I KV + P
Sbjct: 366 DRSAKVSFADSYPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMP 425
Query: 313 GQEKNRIGFVHFAERSSAM---KALKNTEKYELDGQA-LECSLAKPQADQKSAGGSVSEK 368
++ GFV F +A+ + + N+E E + +A + L++P
Sbjct: 426 AAKRKDFGFVTFDTHDNAVACTEGMSNSEIGEGEHKAKVRARLSRP-------------- 471
Query: 369 PSLLQNYPPHIGYGLAGGTYGALGAGFGA 397
LQ PP + +GL G GA G
Sbjct: 472 ---LQR-PPRMKHGLRGNFRVGHGAPRGG 496
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 68 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 126
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 127 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 186
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF++Y +H+ A +R+K+ F+L + V WADP + VD +VK ++V
Sbjct: 187 TKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLFV 246
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 247 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMS 298
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 299 GKCIDGASIEVTLAKP 314
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 149/275 (54%), Gaps = 28/275 (10%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+EV++GG+P A+E LR+ S GE+ + RIMK + S +KG+ FV F + A+ A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL-VKDMK 219
+ N E +GK++ S + +F GN+ + W E+ ++++ + V V+L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 220 NSSN----NRGFAFIEYHNHKCAEYSRQKMTNPNFKLG-TNAPTVSWADP-RNVDSSGAS 273
SSN NRGF F+ + +H A + + +F LG P ++WAD ++D +
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
++K+ ++ NLP +V ++ L+KLF G + +V + ++ GQ + FVHFA+RS A
Sbjct: 197 KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQCP--VAFVHFAKRSELENA 252
Query: 334 LKNTEKYELDGQA-----------LECSLAKPQAD 357
++ E+DG+ ++ S+A+P AD
Sbjct: 253 IE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTMKEEAQLAI 118
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
LNN E + GK I S RLFIG IP+ E++ + +V GV V +
Sbjct: 119 RILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAT 178
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAV 278
+ + NRGFAF++Y +H+ +R+K+ F+L + V WADP + VD +VK +
Sbjct: 179 DKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVL 238
Query: 279 YVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+V+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 239 FVRNLMISTTEETIKGEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSV 290
Query: 337 TEKYELDGQALECSLAKPQADQKSAG-----GSVSEKPSLLQNY 375
+DG ++E +LAKP +++S G G +S P L Y
Sbjct: 291 MSGKCIDGASIEVTLAKP-VNKESTGRQHLNGQISPSPENLIVY 333
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 149/275 (54%), Gaps = 28/275 (10%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+EV++GG+P A+E LR+ S GE+ + RIMK + S +KG+ FV F + A+ A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL-VKDMK 219
+ N E +GK++ S + +F GN+ + W E+ ++++ + V V+L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 220 NSSN----NRGFAFIEYHNHKCAEYSRQKMTNPNFKLG-TNAPTVSWADP-RNVDSSGAS 273
SSN NRGF F+ + +H A + + +F LG P ++WAD ++D +
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
++K+ ++ NLP +V ++ L+KLF G + +V + ++ GQ + FVHFA+RS A
Sbjct: 197 KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQCP--VAFVHFAKRSELENA 252
Query: 334 LKNTEKYELDGQA-----------LECSLAKPQAD 357
++ E+DG+ ++ S+A+P AD
Sbjct: 253 IE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 28/270 (10%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+EV++G +P S+ L ++G + E+R M + S N+G+ F ++++E A
Sbjct: 58 PPRGTEVFVGKLPRAISDMRLIQVLSAVGPLYELRQML-EPSGVNRGYCFAVYQSLEGAK 116
Query: 158 KAID---KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+A +LNN E + G++I S RLFIG IPR ++ ++++E+ G E
Sbjct: 117 RACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKAD---QIIAEIRKHTEGAE 173
Query: 214 ---LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDS 269
+ + + S NRGFAF+EY +HK A Y+R+K L + WA+P + VDS
Sbjct: 174 ELVVYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQVDS 233
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEH---HG--RITKVVVPPAKPGQEKNRIGFVHF 324
VK +YV+NL N + L+K FE H R+ K+ FVHF
Sbjct: 234 DIMENVKILYVRNLMLNTDEITLRKYFEMGDIHCIERVKKI-----------RDFAFVHF 282
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKP 354
R A+ AL +LDG +E LAKP
Sbjct: 283 TTREKALNALNKLNHTKLDGSTIEVCLAKP 312
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 133/263 (50%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E+++G IP D E +L + G + ++R+M SS N+G+AF+TF + E A
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G++ V L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KAL+
Sbjct: 304 VLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
EL+G+ +E AKP DQK
Sbjct: 356 MNGKELEGEPIEIVFAKP-PDQK 377
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 149/271 (54%), Gaps = 8/271 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ +A+E D+R ++IGEV EVR+ + S++KG+AFV F N E A +++ +
Sbjct: 344 EIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSE 403
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
+ N GK+ + S+ LF+GNI W E +++ + + G GV + LV D+++
Sbjct: 404 MKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHE 463
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGFAF+E+ H A ++ +++ P+ G T V++A+P R D + VK V
Sbjct: 464 GRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMAHVKTV 523
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D++++ +G I ++V+ ++ GFV F+ +A+ ++
Sbjct: 524 FLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIERIN 583
Query: 339 KYEL-DGQA---LECSLAKPQADQKSAGGSV 365
EL DG + ++ L+ P ++ G +
Sbjct: 584 NAELGDGNSKTRVKARLSNPMPKTQAVKGGM 614
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 15/274 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DL+ +GEVTEVR+M + +NKGFAF+ F VE A +A+ +
Sbjct: 32 EVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 91
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L N GK+ + SQ LF+GNI + W E L++ + G V + LV+D N
Sbjct: 92 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 151
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVDSSGASQVK 276
NRGFAF+E+ A + +++ G + + T S+ DP + +QVK
Sbjct: 152 GMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVDRTAKVSFTDSFIDPGD---EIMAQVK 208
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KA 333
V++ LP + +D++++L + +G I K+ + P ++ GFV F +A+ K+
Sbjct: 209 TVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 268
Query: 334 LKNTEKYELDGQA-LECSLAKPQADQKSAGGSVS 366
+ N E E + +A + L++P Q+ G +S
Sbjct: 269 INNAELGEGENKAKVRARLSRPL--QRGKGKHIS 300
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 178/339 (52%), Gaps = 33/339 (9%)
Query: 24 DEKVDFDEDNDPEETMEE----EYEYEEVEEEEEEEVIEEEVEEEVEE------------ 67
DE +DF EDN PE EE +Y+ +E+E++E +E +EVEE+ EE
Sbjct: 88 DEHLDF-EDNYPEYEAEEYGGVDYDEKEIEQDEGQEE-GDEVEEDPEEIVGEEEGDTGDE 145
Query: 68 ----------EEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSE--VYIGGIPHDASE 115
+++D AG+ + + E+++H E++ E V++GG+ DA+E
Sbjct: 146 EVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGGLDKDATE 205
Query: 116 HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175
HDL+ +G VTEVR+M + NKGFAF+ F VE A +A+ +L N GK+
Sbjct: 206 HDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKRCGV 265
Query: 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHN 234
+ SQ L++GNI + W E L++ + G V + L++D N NRGFAF+E+ +
Sbjct: 266 TPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGFAFLEFSS 325
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQL 292
A+ + +++ + G + P VS+AD ++ +QVK V++ +LP + +D +
Sbjct: 326 RSDAKEAYKRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWNEDYV 385
Query: 293 KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ L + +G I KV + P + GFV F+ +A+
Sbjct: 386 RDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAV 424
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L +++G + R+M S N+G+ F + N E
Sbjct: 38 PPRGCEVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMDF-SGCNRGYGFCIYTNREDTR 96
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +L++ E + GK + S RLF+G IP+N +++ + +V GV V +
Sbjct: 97 RAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKVTDGVKDVIVYP 156
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + + NRGFAF+EY NHK A +R+K+ L + V WA+P R VD S+V
Sbjct: 157 SVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVDWAEPEREVDEDIMSKV 216
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+ +YV+NL + T++ L+ +H R V + + ++ FVHF +R A AL+
Sbjct: 217 RILYVRNLMLHTTEEALR---DHCNRAIGAVDAVERVKKIRD-YAFVHFRDRLQATAALR 272
Query: 336 NTEKYELDGQAL 347
+LDG++
Sbjct: 273 -----QLDGKSF 279
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA+E DLR + IGEV EVR+ K ++ NKG+AFV F + E +A+ +
Sbjct: 22 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSE 81
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKNS 221
+ N +GK+ + S+ LF+GNI W E +++ + + G GV + +V D ++
Sbjct: 82 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHE 141
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGFAF+E+ H A + +++ P+ G T V++A+P R D +QVK +
Sbjct: 142 GRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMAQVKTI 201
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D++++ + +G I +VV+ ++ GFV F+ A+ ++
Sbjct: 202 FLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACIEGIN 261
Query: 339 KYEL 342
E
Sbjct: 262 NREF 265
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
Y +F+G + R+ EDL+KV ++G V V L K++ +++ N+G+AF+++ + + + +
Sbjct: 21 YEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKNL-STNRNKGYAFVKFASKEHVKRA 78
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG- 300
+M NP + G T D +++ N+ T++ +++ + +G
Sbjct: 79 LSEMKNPVIR-GKRCGTAPSEDN-----------DTLFLGNICNTWTKEAIRQKLKDYGV 126
Query: 301 ----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
IT VV A+ F+ FA + AM A K +K
Sbjct: 127 EGVENIT--VVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQK 167
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 142/257 (55%), Gaps = 13/257 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++G IP D E +L + G + ++R+M S +N+G+AF+TF E A +A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG---PGVTGVELVKDM 218
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 146
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKA 277
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++VK
Sbjct: 147 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV 206
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 207 LFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEM 258
Query: 338 EKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 259 NGKEIEGEEIEIVLAKP 275
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 25/199 (12%)
Query: 167 EFKGKKIRCSTS---QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
E +G K++ ST +AK ++F+G IPR+ ++L + + GP + + L+ D S
Sbjct: 8 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD-PLSGQ 65
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDSSGASQVKAVYVKN 282
NRG+AFI + + A+ + + + + G + +S A+ R ++V +
Sbjct: 66 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR------------LFVGS 113
Query: 283 LPRNVTQDQLKKLFEHHGRITK----VVVPPAKPGQEKNR-IGFVHFAERSSAMKALKN- 336
+P+N T++ + + F +T+ V++ ++KNR F+ + + SA +A +
Sbjct: 114 IPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRL 173
Query: 337 -TEKYELDGQALECSLAKP 354
+ K ++ G + A P
Sbjct: 174 MSGKVKVWGNVVTVEWADP 192
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 139/253 (54%), Gaps = 11/253 (4%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++G IP D E +L + G + ++R+M S +N+G+A +TF E A +A+
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 164 NNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L +
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK 345
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVK 281
NR F F+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+
Sbjct: 346 KNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 404
Query: 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341
NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+ E
Sbjct: 405 NLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 456
Query: 342 LDGQALECSLAKP 354
++G+ +E LAKP
Sbjct: 457 IEGEEIEIVLAKP 469
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 43/244 (17%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+A+ KL +F+G IPR+ ++L + + GP + + L+ D
Sbjct: 221 EAV-KL--------------------VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD 258
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPRNVDSSGASQVK 276
S NRG+A I + + A+ + + + + G + +S A+ R
Sbjct: 259 -PLSGQNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR----------- 306
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITK----VVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++V ++P+N T++ + E ++T+ V++ ++KNR F+ + + SA +
Sbjct: 307 -LFVGSIPKNKTKEN---ILEEFSKVTEGLVDVILYHQPDDKKKNRFCFLEYEDHKSAAQ 362
Query: 333 ALKN 336
A +
Sbjct: 363 ARRR 366
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 15/263 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV++G IP D E +L + IGE+ E+R+M S N+G+ FV + + A
Sbjct: 54 PARGCEVFVGKIPRDCYEDELVPVFEKIGEIYELRLMM-DFSGSNRGYCFVMYTKRDDAK 112
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ +LNN E KG+ + S RLF+G IP+N +++ + +V GV V +
Sbjct: 113 RAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKVTEGVVDVIVYP 172
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P + VD S+V
Sbjct: 173 SATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDVMSKV 232
Query: 276 KAVYVKNLPRNVTQDQLKKLFEH----HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
K +YV+NL T++ L+ F G + +V ++ FVHF ER A+
Sbjct: 233 KILYVRNLMLTTTEEFLETTFNQACGKEGAVERV--------KKLRDYAFVHFKERDDAL 284
Query: 332 KALKNTEKYELDGQALECSLAKP 354
A++ ++G +E +LAKP
Sbjct: 285 LAMEVINGQLIEGSMVEVTLAKP 307
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 44/287 (15%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGL 383
+L+G+ +E AKP DQK + + Q Y + YGL
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 401
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 44/287 (15%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGL 383
+L+G+ +E AKP DQK + + Q Y + YGL
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 401
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 190/403 (47%), Gaps = 60/403 (14%)
Query: 27 VDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVE--------EEVEEEEEDADAGKSG 78
VD+DE + E EE+YE + E E+VIEEE + + E E +A +
Sbjct: 56 VDYDEKD--LEQYEEQYEDGDEVVEYTEDVIEEETDMVDEELDGGDDGEGEGYENAEEEH 113
Query: 79 DMQIEDED------EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132
++ +EDE+ E +K E EV++GG+ DA+E DLR +GE+TEVR
Sbjct: 114 NVDVEDEEHHEMVKEHRKRKEF--------EVFVGGLDKDATESDLRKVFGEVGEITEVR 165
Query: 133 IMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-----------FKGKKIRCSTSQAK 181
+M + +NKGFAF+ + VE A +A+ +L N +GK+ + S
Sbjct: 166 LMMNPVTKKNKGFAFLRYATVEQARRAVSELKNPSVGLKIWIFYIMVRGKQCGVAPSHDN 225
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
LF+GNI + W E L++ + G + LV+D N NRG+A +E+ A
Sbjct: 226 DTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMD 285
Query: 241 SRQKMTNPNFKLGTN-APTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298
+ +++ + G + + VS+AD VD +QV+ V++ LP + +D++KK +
Sbjct: 286 AFRRLQKRDVVFGVDRSAKVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKK 345
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM---KALKNTEKYELDGQA-LECSLAKP 354
+G I KV + P ++ GFV F +A+ + N+E E D +A + L++P
Sbjct: 346 YGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRP 405
Query: 355 QADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGFGA 397
LQ PP + +GL G GA G
Sbjct: 406 -----------------LQR-PPRMKHGLRGNFRVGQGAPRGG 430
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 9/246 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +G VTEVR+M + +NKGFAF+ F VE A +A+ +
Sbjct: 283 EVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 342
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE---LVKDMK 219
L N GK+ + SQ L++GNI + W E L++ + GVT VE LV+D
Sbjct: 343 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHY--GVTNVEDLTLVEDTN 400
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVSWADPRNVDSSG--ASQVK 276
+ NRGFAF+E+ + A + +++ + G + VS+AD +D +QVK
Sbjct: 401 DEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKLAKVSFADS-FIDPGDEIMAQVK 459
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
V++ LP + +D ++ L +G I K+ + P + GFV F +A+K +
Sbjct: 460 TVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADS 519
Query: 337 TEKYEL 342
EL
Sbjct: 520 ITGTEL 525
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P RD + IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 102
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 275
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 9/255 (3%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP + E +L + G++ E+R+M + S EN+GFAFV + E A AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIK 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + G+ I S RLFIG IPR E++ K + + GV V + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+++ F+L A V WA P + VD+ +VK +Y
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
V+NL + T+D +K F + VV K ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDTIKAEF---NKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSVMNG 293
Query: 340 YELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 294 KCIDGASIEVTLAKP 308
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P RD + IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 102
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 275
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 9/255 (3%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP + E +L + G++ E+R+M + S EN+GFAFV + E A AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIK 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + G+ I S RLFIG IPR E++ K + + GV V + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+++ F+L A V WA P + VD+ +VK +Y
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
V+NL + T+D +K F + VV K ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDTIKAEF---NKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSIMNG 293
Query: 340 YELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 294 KCIDGASIEVTLAKP 308
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P RD + IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 102
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 275
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 140/260 (53%), Gaps = 19/260 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P RD + IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 102
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 275
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 19/260 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIK 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ +++ + +V GV V + + +
Sbjct: 120 FLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKVTEGVVDVIVYPNATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+++ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNKF-----------KPGVVERVKKLRDYAFVHFFHREDAVAAM 288
Query: 335 KNTEKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 289 SVMNGKCIDGASIEVTLAKP 308
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 15/258 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ G+V E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGN-NRGYAFVTFTNRQDARDA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL ++ ++K F + KPG++ + +K +
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN-----------VKPGKKHLCLYCTSIILNLHTIKKMITI 281
Query: 338 EKYE-LDGQALECSLAKP 354
+ +DG +E +LAKP
Sbjct: 282 LCLQIIDGSPIEVTLAKP 299
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 15/258 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E++IG +P D E +L C+ G+V E+R+M + + N+G+AFVTF N + A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFNGN-NRGYAFVTFTNRQDARDA 112
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
I +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSA 172
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ S NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S VK
Sbjct: 173 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YV+NL ++ ++K F + KPG++ + +K +
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN-----------VKPGKKHLCLYCTSIILNLHTIKKMITI 281
Query: 338 EKYE-LDGQALECSLAKP 354
+ +DG +E +LAKP
Sbjct: 282 LCLQIIDGSPIEVTLAKP 299
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 157/300 (52%), Gaps = 9/300 (3%)
Query: 64 EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLAL---PPHGSEVYIGGIPHDASEHDLRD 120
E++EE E+ D G + ++ ++ E+ AL +E++IGG+ A E D+R
Sbjct: 290 EMKEEVENCDGGGTKEVAEVEDSMAVLSEEMEALERQKRRKTEIFIGGLDKSAREEDIRK 349
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180
+ +GEV EVR+M + +NKG+AF+ F A +A+ K E GK+ + +
Sbjct: 350 VFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEG 409
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+F+GNI +NW +ED+ K++ E+G + V ++ D N NRGFAF+E +K A+
Sbjct: 410 NDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQ 469
Query: 240 YSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298
+ +K+ + V+WA+P N D +VK VY + +P + +++++ F+
Sbjct: 470 LAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKK 529
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKP 354
G I VV+ ++ FV + R +A++ +++ + L D + ++ SLAKP
Sbjct: 530 FGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 589
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 133/244 (54%), Gaps = 4/244 (1%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++GG+ DA+E DLR + IGEV EVR+ K ++ NKG+AFV F N +A+ +
Sbjct: 27 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSE 86
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKNS 221
+ N +GK+ + S+ LF+GNI W E +++ + + G GV + +V D ++
Sbjct: 87 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHE 146
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGFAF+E+ H A + +++ P+ G T V++++P R D +QVK +
Sbjct: 147 GRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMAQVKTI 206
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D +++ + +G I ++V+ ++ GFV F+ +A+ ++
Sbjct: 207 FLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEGIN 266
Query: 339 KYEL 342
E
Sbjct: 267 NREF 270
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
Y +F+G + R+ EDL+KV ++G V V L K++ +++ N+G+AF+++ N + +
Sbjct: 26 YEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKNL-STNRNKGYAFVKFANKGHVKRA 83
Query: 242 RQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG- 300
+M NP + G T D +++ N+ T++ +++ + +G
Sbjct: 84 LSEMKNPVIR-GKRCGTAPSEDN-----------DTLFLGNICNTWTKEAIRQKLKDYGV 131
Query: 301 ----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
IT VVP A+ F+ FA + AM A K +K
Sbjct: 132 EGVENIT--VVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQK 172
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 145/271 (53%), Gaps = 8/271 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E++IGG+ + E DL+ + +GEV EVR++K +++N+G FV F + A KA+ +
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
+ N GK+ + S+ LFIGNI W E + K + E GV + LV+D ++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHE 272
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGF FI++ H A ++ +++ P+ G T V++++P + D ++VK+V
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSV 332
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP +D+++K F+ +G I +V + P ++ GFV F +A+ +++
Sbjct: 333 FIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDVN 392
Query: 339 KYEL-DGQA---LECSLAKPQADQKSAGGSV 365
K +L DG + + L+ P ++ G +
Sbjct: 393 KKDLVDGNSKIKVRARLSNPLPKMQAVKGGM 423
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 31/353 (8%)
Query: 21 VGSDEKVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDM 80
+G E+V ++++ EE EE+ E + E E+ E ++EE +E +E E
Sbjct: 360 LGEQERVQLEDEDP-EEDPEEDPEEDPEELPEDTETLDEEHDEHMEFE-----------A 407
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
+ +K+H E+++GG+ D +E DL+ Q IGEV EVR+ K +S
Sbjct: 408 IAKQRRIRKEH-----------EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTS 456
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQK 200
+N+G+A V F N E A KA+ ++ N +GK+ S S+ LF+GNI W E +++
Sbjct: 457 KNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQ 516
Query: 201 VVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT- 258
+ + G GV + LV D+++ +RGFAF+E+ H A + +++ P G T
Sbjct: 517 KLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTA 576
Query: 259 -VSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
V++A+P R D +QVK+V++ LP + +D +++ + +G I K+V+ ++
Sbjct: 577 KVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKR 636
Query: 317 NRIGFVHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKPQADQKSAGGSV 365
GFV F+ +A+ + K EL DG + L L+ P ++ G +
Sbjct: 637 KDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKLRARLSNPLPKTQAVKGGM 689
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L G++ E+R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFGRAGKIYELRLMM-EFSGENRGYAFVMYTTKEEAQLAIK 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP++ E++ + +V GV V + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKVTEGVVDVIVYPNATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+++ F+ + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKIVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+NL + T+D++K F G + +V ++ FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDKIKAEFNKFKPGVVERV--------KKLRDYAFVHFFHREDAVAAMSVM 291
Query: 338 EKYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 292 NGKCIDGASIEVTLAKP 308
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 145/306 (47%), Gaps = 51/306 (16%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G EV++G IP D E +L + G++ E R+M + + EN+G+AFV + N E A +AI
Sbjct: 75 GCEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMM-EFTGENRGYAFVMYTNKEAAQRAI 133
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
L+N + + GK I S RLF+G+IP+ +++ + ++ GV V +
Sbjct: 134 QMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKLTDGVVDVIMYPSST 193
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKM---------------------------------- 245
+ S NRGFAF+EY +HK A +R+K+
Sbjct: 194 DKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSS 253
Query: 246 ----TNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH- 299
T F+L + V WA P ++V+ +V+ +YV+NL N +++ L K F H
Sbjct: 254 GRGCTTGTFQLWGQSIQVDWAQPEKDVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSHFK 313
Query: 300 -GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
G + +V ++ FVH+ R A+ AL +DG A+E LAKP +
Sbjct: 314 PGSVERV--------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAAVEVMLAKPAISK 365
Query: 359 KSAGGS 364
+ + GS
Sbjct: 366 EDSSGS 371
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 300
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 301 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 353 MNGKDLEGENIEIVFAKP-PDQK 374
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 144/271 (53%), Gaps = 8/271 (2%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E++IGG+ + E DL+ + +GEV EVR++K +++N+G FV F + A KA+ +
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
+ N GK+ + S+ LFIGNI W E + K + E GV + LV+D ++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHE 272
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT--VSWADP-RNVDSSGASQVKAV 278
+RGF FI++ H A ++ +++ P+ G T V++++P + D ++VK+V
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSV 332
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP +D+++K F+ +G I +V + P ++ GFV F +A+ + +
Sbjct: 333 FIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDIN 392
Query: 339 KYEL-DGQA---LECSLAKPQADQKSAGGSV 365
K +L DG + + L+ P ++ G +
Sbjct: 393 KKDLVDGNSKIKVRARLSNPLPKMQAVKGGM 423
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQVK 300
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 301 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 353 MNGKDLEGENIEIVFAKP-PDQK 374
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 149/349 (42%), Gaps = 94/349 (26%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G+E+++G IP D E +L + G + ++R+M S N+G+AFVTF E
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 156 ASKAID----------------------------------------------------KL 163
A +A+ +
Sbjct: 216 AQQAVKLVRLRSLHNKNKCTPLCFFLHSAQPTQQCTVTVDIFLIVSKVLSPPLPQFSLQC 275
Query: 164 NNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
NN E + GK I S A RLF+G+IP++ E + + S+V G+ V L +
Sbjct: 276 NNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYLQPVDKK 335
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR----------------- 265
NRGF F+EY +HK A +R+++ + K+ N TV WADP
Sbjct: 336 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMAKVRVGPRA 395
Query: 266 ---------------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
+ SG QVK ++V+NL +VT++ L+K F G++ +V
Sbjct: 396 PIVCVLARIFFFFLPTLSLSGPLQVKVLFVRNLASSVTEELLEKAFSQFGKLERV----- 450
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
++ F+HF ER A+KAL + +L+G+ +E AKP DQK
Sbjct: 451 ---KKLKDYAFIHFEERDGAVKALADLNGKDLEGEHIEIVFAKP-PDQK 495
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 3/232 (1%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+EHDL+ +G VTEVR+M + NKGFAF+ F VE A +A+ +
Sbjct: 199 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 258
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L N GK+ + SQ L++GNI + W E L++ + G V + L++D N
Sbjct: 259 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNE 318
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR-NVDSSGASQVKAVY 279
NRGFAF+E+ + A+ + +++ + G + P VS+AD ++ +QVK V+
Sbjct: 319 GMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVF 378
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
V +LP + + ++ L + +G I K+ + P + GFV F+ ++A+
Sbjct: 379 VDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAV 430
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 9/260 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GE+TEVR+M + +NKGFAF+ F VE A +A+
Sbjct: 195 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 254
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQK--VVSEVGPGVTGVELVKDMKN 220
L N +GK+ + S+ LF+GNI + W E L+ + EV + LV+D N
Sbjct: 255 LKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYEVE-NFDDLILVEDSNN 313
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPR-NVDSSGASQVKAV 278
NRG+A +E+ A + +++ + G + VS+AD VD +QV+ V
Sbjct: 314 PGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRTAKVSFADSYPEVDDEMMAQVRTV 373
Query: 279 YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
++ LP + +D++KK + +G I KV + P ++ GFV F +A+ +
Sbjct: 374 FLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACVDGIT 433
Query: 339 KYEL---DGQA-LECSLAKP 354
E+ D +A + L++P
Sbjct: 434 SSEIGEGDSKAKVRARLSRP 453
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 138/259 (53%), Gaps = 7/259 (2%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+E++IGG+ DA E D+R ++GE+ E+R++ + +NK FAF+ + + A KA++
Sbjct: 499 TEIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALE 558
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKN 220
K E GK+ + + +F+GNI + W + D+ K++ E+G + V ++ D N
Sbjct: 559 KYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSN 618
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVY 279
NRGFAF+E HK A+ + +K+ + N V+WA+P + D +VK+VY
Sbjct: 619 VGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI-KVAWAEPLSEPDEEELLKVKSVY 677
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP + +++L+ F G I +V+ + F++F+ R +A+ +++
Sbjct: 678 AEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFYH 737
Query: 340 YELDGQA----LECSLAKP 354
L + ++ SLAKP
Sbjct: 738 ETLTNEGSQVNVKVSLAKP 756
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 14/242 (5%)
Query: 99 PHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
P GS E+YIG IP + E L + +G++ ++R+M + N+G+AF+T+ + A
Sbjct: 287 PQGSGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAA 346
Query: 157 SKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+A K + E GK ++ + S A RLFIGNIP++ E++ E GVT +
Sbjct: 347 YEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIY 406
Query: 216 K--DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGA 272
D S NRGF F+++ +HK A +++K+ + + V WA+ + D
Sbjct: 407 SSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 466
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++VK +YV+NL VT++QLK++F +G + + ++ F+HF ER A+K
Sbjct: 467 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA--------KKIRDYAFIHFMEREPAIK 518
Query: 333 AL 334
A+
Sbjct: 519 AM 520
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 25/301 (8%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GE++EVR+M + +NKGFAF+ + VE A +A+
Sbjct: 200 EVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSD 259
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQ-KVVSEVGPGVTGVELVKDMKNS 221
L N +GK+ + S LF+GNI + W E L+ K+ S + LV+D N
Sbjct: 260 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFDDLILVEDSNNP 319
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWADPR-NVDSSGASQVKAVY 279
NRG+A +E+ A + +++ + G + + VS+AD VD +QV+ ++
Sbjct: 320 GMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVDRSAKVSFADSYPEVDDEMMAQVRTIF 379
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP + +D++KK + +G I KV + P ++ GFV F +A+ +
Sbjct: 380 LDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACVDGITS 439
Query: 340 YEL---DGQA-LECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGF 395
E+ D +A + L++P LQ PP + +GL G GA
Sbjct: 440 SEIGEGDSKAKVRARLSRP-----------------LQR-PPRMKHGLRGNFRIGQGAPR 481
Query: 396 G 396
G
Sbjct: 482 G 482
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NR F F+EY +HK A+QVK
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKT----------------------------------AAQVK 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 44/263 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+Q +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKT----------------------------------AAQAR 303
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 304 LLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 337 TEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQK 377
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQ--SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
+E++ GG+ +E +L + S V E+R+MK K + E+KGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
IDKLN KGK I S+ K +LFIGN+P++ E + +E G+ ++ +
Sbjct: 151 VIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG--TNAPTVSWADPRNV------DSS 270
+ NRGFAFIEY +H A+ +R+ +T KLG TV+W+DP D
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 271 GASQVKAVYVKNLPRNVTQD 290
++KA+Y++NLP N D
Sbjct: 271 ENKEIKAIYIRNLPLNHRND 290
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQ--SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
+E++ GG+ +E +L + S V E+R+MK K + E+KGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
IDKLN KGK I S+ K +LFIGN+P++ E + +E G+ ++ +
Sbjct: 151 VIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG--TNAPTVSWADPRNV------DSS 270
+ NRGFAFIEY +H A+ +R+ +T KLG TV+W+DP D
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 271 GASQVKAVYVKNLPRNVTQD 290
++KA+Y++NLP N D
Sbjct: 271 ENKEIKAIYIRNLPLNHRND 290
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 153/310 (49%), Gaps = 22/310 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++G + ASE DL+ +GEVTEVRI+K + ++KG AF+ F VE A +A+ +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GKK + SQ LF+GNI + W E L++ + G + + LV+D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADP-RNVDSSGASQVKAVY 279
+ NRG+AF+E+ + A + +++ + G P VS+ D +++ +QVK ++
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIF 394
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ L + +++++ L + +G++ KV + P + GFV F +A+ K
Sbjct: 395 IDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINN 454
Query: 340 YEL----DGQALECSLAKP-----------QADQKSAGGSVSEKPSLLQNYPPHIGYGLA 384
EL D + L++P ++DQ+S G+ S PP LA
Sbjct: 455 SELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRHGAGRSGRSSFARLPPR---SLA 511
Query: 385 GGTYGALGAG 394
+ A GAG
Sbjct: 512 -SSRSARGAG 520
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 153/310 (49%), Gaps = 22/310 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++G + ASE DL+ +GEVTEVRI+K + ++KG AF+ F VE A +A+ +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GKK + SQ LF+GNI + W E L++ + G + + LV+D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADP-RNVDSSGASQVKAVY 279
+ NRG+AF+E+ + A + +++ + G P VS+ D +++ +QVK ++
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIF 394
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ L + +++++ L + +G++ KV + P + GFV F +A+ K
Sbjct: 395 IDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINN 454
Query: 340 YEL----DGQALECSLAKP-----------QADQKSAGGSVSEKPSLLQNYPPHIGYGLA 384
EL D + L++P ++DQ+S G+ S PP LA
Sbjct: 455 SELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRHGAGRSGRSSFARLPPR---SLA 511
Query: 385 GGTYGALGAG 394
+ A GAG
Sbjct: 512 -SSRSARGAG 520
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQAKYRLF 185
+ E+R+M D +N+G+AFV + + A +A+ +LNN E + G+ + S RLF
Sbjct: 53 RIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLF 111
Query: 186 IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
IG IP+ E++ + +++V GV V + + NRGFAF+EY +H+ A +R+K+
Sbjct: 112 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 171
Query: 246 TNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRI 302
+L + V WA+P +VD VK +YV+NL T+D +KK F G +
Sbjct: 172 MPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCV 231
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
+V ++ FVHF R A+ A+ N EL+G LE +LAKP
Sbjct: 232 ERV--------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 275
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 19/247 (7%)
Query: 115 EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKI 173
E +L + G++ E R+M + S EN+G+AFV + E A AI LNN E + GK I
Sbjct: 3 EDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYH 233
S RLFIG IP+ E++ + +V GV V + + + NRGFAF+EY
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYE 121
Query: 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQL 292
+H+ A +R+K+ F+L + V WADP + VD +VK +YV+NL + T++ +
Sbjct: 122 SHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETI 181
Query: 293 KKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
K F KPG ++ FVHF R A+ A+ +DG ++
Sbjct: 182 KAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASI 230
Query: 348 ECSLAKP 354
E +LAKP
Sbjct: 231 EVTLAKP 237
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 14/260 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L + G++ R+M + N+G+ F + N
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFNGL-NRGYGFCLYTNRNDTK 119
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+D+LN E KGK + S RLFIG IP++ +++ +S+V GV V +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + + NRGFAF+EY NHK A +R+K+ L + V WA+P R VD + S+V
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDENIMSKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
+ +YV+NL + T++ +K F + A +K R FVHF R A+ AL
Sbjct: 240 RILYVRNLMLHTTENAVKDHFN-----QAIHSMDAVERVKKIRDYAFVHFHNRIDAITAL 294
Query: 335 KNTEKYELDGQALECSLAKP 354
K +LD ++ L P
Sbjct: 295 K-----QLDDICVKNGLGSP 309
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L ++IG + E+R+M S +G+AF +F +V+ A +A
Sbjct: 54 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDFSGS-TRGYAFASFEDVKTARRAC 112
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
KL+ E + G +I S RLF G +P+N E+ + ++++ G+ + L
Sbjct: 113 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 172
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ + NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 173 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 232
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
A++V+NL +++Q +++ +F+ + +I P ++ N FVH+ R +A +
Sbjct: 233 ALFVRNLSLDMSQQKVRDIFQKNTKI------PILKLKKINHFAFVHYESRQAAQTVM 284
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 131/260 (50%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L +++G + E+R+M S +G+AF F N ++A A
Sbjct: 56 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDFSGS-TRGYAFALFENSKIARSAC 114
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
KL+ E + G +I S RLF G +P+N E+ + ++++ G+ + L
Sbjct: 115 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 174
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ + NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 175 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 234
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
A++V+NL N+ Q +++ +F+ + +I P ++ N FVH+ R +A +
Sbjct: 235 ALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLKKINHFAFVHYENRKAAQNVMDI 288
Query: 337 TEKYE--LDGQALECSLAKP 354
++ + + E AKP
Sbjct: 289 MTRHNGVAEAEGWEIRWAKP 308
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 11/255 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G E+Y+G IP D E L G++ + R+M + ++G+AFVT+ E A+ A
Sbjct: 224 GHEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNAA 283
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
K + E GK ++ + S A RLF+GNIP+ +++ + + GVT V +
Sbjct: 284 KKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHAEGVTDVIVYSVPD 343
Query: 220 NSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
N NRGF F+++ +HK A ++K+ + V WA+ + D S+VK
Sbjct: 344 NEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQEEPDEDTMSKVKV 403
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+Y++N+ VT+++L +LF+ + + +V ++ F+HF ER MKA++
Sbjct: 404 LYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCMKAMEQW 455
Query: 338 EKYELDGQALECSLA 352
EL+G +E SLA
Sbjct: 456 NGKELEGTVVEASLA 470
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++G + A+E DL+ +GEVTE+RI+K + ++KG AF+ F +E A +A+ +
Sbjct: 211 EIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKNPQTKKSKGSAFLRFATMEQAKRAVKE 270
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNS 221
L + GKK + SQ LFIGNI + W E L++ + G + + LV+D N
Sbjct: 271 LKSPMINGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVENMDDITLVEDSNNV 330
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-----TVSWADPRNVDSSGASQVK 276
+ NRG+AF+E+ + A + +++ + G P T S+ DP + +QVK
Sbjct: 331 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDPED---EIMAQVK 387
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+++ L + +++++ L + +G++ KV + P + GFV F +A+ K
Sbjct: 388 TIFIDGLLPSWNEERVRDLLKRYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVTCAKF 447
Query: 337 TEKYEL----DGQALECSLAKP-----------QADQKSAGGSVSEKPSLLQNYPPHIGY 381
EL D + L++P ++DQ+S G+ PP
Sbjct: 448 INNSELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRHGTGRSGRISFARLPPR--- 504
Query: 382 GLAGGTYGALGAGFGAAAFAQTTVWSS 408
LA + A GAG A + + V S
Sbjct: 505 SLA-SSRSARGAGSRAPSSSAKRVSGS 530
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 138/266 (51%), Gaps = 24/266 (9%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQ 199
+N+G+AFV + + A +A+ +LNN E + G+ + S RLFIG IP+ E++
Sbjct: 2 KNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEIL 61
Query: 200 KVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259
+ +++V GV V + + NRGFAF+EY +H+ A +R+K+ +L + V
Sbjct: 62 EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 121
Query: 260 SWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
WA+P +VD VK +YV+NL T+D +KK F G+ V K ++
Sbjct: 122 DWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD--- 175
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP------QADQKSA-GGSVSE---- 367
FVHF R A+ A+ N EL+G LE +LAKP QK+A GG V+E
Sbjct: 176 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQ 235
Query: 368 KPSLLQNYPPHIGYGLA--GGTYGAL 391
+PS + + P Y LA G Y AL
Sbjct: 236 QPSYVYSCDP---YTLAYYGYPYNAL 258
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 133/260 (51%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L ++IG + E+R+M S +G+AF +F +V+ A +A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDFSGS-TRGYAFASFEDVKTARRAC 118
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
KL+ E + G +I S RLF G +P+N E+ + ++++ G+ + L
Sbjct: 119 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 178
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ + NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 179 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 238
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
A++V+NL +++Q +++ +F+ + +I P ++ N FVH+ R +A +
Sbjct: 239 ALFVRNLNLDMSQQKVRDIFQKNTKI------PILKLKKINHFAFVHYENRQAAQTVMDI 292
Query: 337 TEKYE--LDGQALECSLAKP 354
+ D + E AKP
Sbjct: 293 MTRSNGIADSEGWEIRWAKP 312
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E+Y+G IP D E L + G++ ++R+M S ++G+AFVT+ N E A+ A
Sbjct: 198 QGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAA 257
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ E GK ++ + S A RLFIGNIP+ +++ + + GV V +
Sbjct: 258 AKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVP 317
Query: 219 KNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
N NRGF F+++ +HK A ++K+ + V WA+ + D S+VK
Sbjct: 318 DNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVK 377
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+Y++N+ VT+++L +LF+ + + +V ++ F+HF ER +KA++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAMEE 429
Query: 337 TEKYELDGQALECSLA 352
EL+G +E SLA
Sbjct: 430 WNGKELEGTVVEASLA 445
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 131/260 (50%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L +++G + E+R+M S +G+AF F N ++A A
Sbjct: 45 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDFSGS-TRGYAFALFENSKIARSAC 103
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
KL+ E + G +I S RLF G +P+N E+ + ++++ G+ + L
Sbjct: 104 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 163
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ + NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 164 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 223
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
A++V+NL N+ Q +++ +F+ + +I P ++ N FVH+ R +A +
Sbjct: 224 ALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLKKINHFAFVHYENRKAAQSVMDI 277
Query: 337 TEKYE--LDGQALECSLAKP 354
++ + + E AKP
Sbjct: 278 MTRHNGVAEAEGWEIRWAKP 297
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 132/260 (50%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L + +G + E+R+M S +G+AF + + +A +A
Sbjct: 43 GAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDFSGS-TRGYAFALYEDPRIAREAC 101
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
++LN E + G +I S RLF G +P+N + + ++++ G+ + + + +
Sbjct: 102 ERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKILDGIVDIYVYPNAQ 161
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
N S NRGF F+E+ +H+ A +R+K+ L + V WADP VD V
Sbjct: 162 NRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVT 221
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
A++V+NL ++ Q ++K++ H + P ++ N F+H+ R +A +
Sbjct: 222 ALFVRNLSIDMPQQKVKEIIYRHTNV------PILKLKKINHFAFIHYESREAAQTVMDI 275
Query: 337 TEKYE--LDGQALECSLAKP 354
+K + ++ Q E AKP
Sbjct: 276 MQKPDSIVEQQGWEVRWAKP 295
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 133/267 (49%), Gaps = 26/267 (9%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L + G++ R+M + N+G+ F + N
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFNGL-NRGYGFCLYTNRNDTK 119
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+D+LN E KGK + S RLFIG IP++ +++ +S+V GV V +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + + NRGFAF+EY NHK A +R+K+ L + V WA+P R VD + S+V
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDENIMSKV 239
Query: 276 KAVYVKNLPRNVTQDQLKKLFEH--HG-----RITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ +YV+NL + T++ +K F H R+ K+ FVHF R
Sbjct: 240 RILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI-----------RDYAFVHFHNRI 288
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQ 355
A+ ALK +LD ++ L P
Sbjct: 289 DAITALK-----QLDDICVKNGLGSPN 310
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 11/256 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G E+Y+G IP+D E L + G++ ++R+M + ++G+AFVT+ E A+ A
Sbjct: 216 QGHEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANA 275
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ E GK ++ + S A RLF+GNIP+ +++ + + GVT V +
Sbjct: 276 AKTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYSVP 335
Query: 219 KNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVK 276
N NRGF F+++ +HK A ++K+ + V WA+ + D S+VK
Sbjct: 336 DNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVK 395
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+Y++N+ VT+++L ++F+ + + +V ++ F+HF ER MKA++
Sbjct: 396 VLYIRNIKEAVTEEKLTEIFKEYASLDRV--------KKVKDYAFIHFNEREDCMKAMEQ 447
Query: 337 TEKYELDGQALECSLA 352
EL+G +E SLA
Sbjct: 448 WNGKELEGTVVEASLA 463
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 10/216 (4%)
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQK 200
N+G+AFVTF N A AI +LNN E + G+ + S RLF+G IP+ E++
Sbjct: 11 NRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILS 70
Query: 201 VVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260
+ +V GV V + + + NRGFAF+EY +H+ A +R+K+ +L + V
Sbjct: 71 EMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVD 130
Query: 261 WADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR- 318
WA+P VD S VK +YV+NL + +++ ++K F + + P A +K R
Sbjct: 131 WAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRD 183
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
FVHF+ R A++A+K LDG +E +LAKP
Sbjct: 184 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 219
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 141/271 (52%), Gaps = 25/271 (9%)
Query: 124 SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYR 183
+ GE+ EVR+M ++ ++KG+ FV F E A+KAI + + +GKKI S +
Sbjct: 199 TCGEIIEVRMMTDQNG-KSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTT 257
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV-------KDMKNSSNNRGFAFIEYHNHK 236
LF GN+P++W ++ K+V + VT V+L + NRGFAF+++ +H
Sbjct: 258 LFFGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHA 317
Query: 237 CAEYSRQKMTNPNFKLGTNA-PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
A + + + +F LG + P V WA+ +D +++ +V NLP++ +D LKKL
Sbjct: 318 AAARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKL 377
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G++ KV++ +K GQ +GFVHFA+RS + + L + C+ P
Sbjct: 378 FGPFGKVEKVLL--SKKGQSP--VGFVHFAKRSCLLML------HVLHPGS--CTCVHPL 425
Query: 356 ADQKSAGGSVSEKPSLLQNYPPHIGYGLAGG 386
A A + P+ Q+ PP + LAGG
Sbjct: 426 AAMSCA---LVGLPACAQSMPPKY-FLLAGG 452
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 11/238 (4%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+E+++G +P D E +L + +G + E+R+M S +G+AF F + + A A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLDFSGS-TRGYAFALFEDSKTARNAC 118
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
KL+ E + G +I S RLF G +P+N E+ ++++ G+T + L
Sbjct: 119 AKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKILEGITDIYLYPSAH 178
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ S NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 179 DKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEDVMENVT 238
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
A++V+NL +V Q +++++F+ +I P ++ N F+H+ R +A +
Sbjct: 239 ALFVRNLSLDVQQQKIREIFQKSTKI------PILKLKKINHFAFIHYESRQAAQAVM 290
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 12/261 (4%)
Query: 96 ALPPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
A P GS E+Y+G IP+D E L G+V ++R+M + ++G+AFVT+ N E
Sbjct: 202 ATGPTGSCEIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKE 261
Query: 155 LASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
A+ A K + E GK ++ + S A RLF+GNIP+ +++ + + GVT V
Sbjct: 262 DAAAAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVI 321
Query: 214 LVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSG 271
+ N NRGF F+++ +HK A ++K+ + V WA+ ++ D+
Sbjct: 322 VYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQDEPDADT 381
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
S+VK +Y++N+ VT+++L +LF+ + + +V ++ F+HF ER +
Sbjct: 382 MSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCV 433
Query: 332 KALKNTEKYELDGQALECSLA 352
KA++ +L+G +E SLA
Sbjct: 434 KAMEEWNGKDLEGTIVEASLA 454
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 20/265 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E++IG +P D E +L G + +R+M +G+ F+++ E A
Sbjct: 41 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMM-DFFGRTRGYGFISYFTQEDAH 99
Query: 158 KAIDKLNNTEFKGK-KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ NN + + K KI S S RLFIGNIPR+ ++Q V+ + G+ +
Sbjct: 100 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 159
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQV 275
+ N S NRGF F+E+ +H+ A +R++++ N + V WA+P V+ QV
Sbjct: 160 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQV 219
Query: 276 KAVYVKNLPRNVTQDQLKKLF------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+Y+ NLP ++ ++LK H ++ K+ N FVHF R
Sbjct: 220 TKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI-----------NNFAFVHFTLRKY 268
Query: 330 AMKALKNTEKYELDGQALECSLAKP 354
A +A + + + + A+P
Sbjct: 269 AEEAFRKLTGLVMMDKLIGVEWARP 293
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 13/258 (5%)
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
Q+E E +K EL EV++GG+ +A+EHDLR +GE+TEVR+ +
Sbjct: 181 QVEVIKETQKQKEL--------EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTK 232
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKK--IRCSTSQAKYRLFIGNIPRNWGSEDL 198
NKGFA + F VE +A+ +L N GK+ I +T Q L++ NI ++W E L
Sbjct: 233 RNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEAL 292
Query: 199 QKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
++ + G + L++D N N G AF+E+ +H ++ + +++ + G + P
Sbjct: 293 KEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKP 352
Query: 258 T-VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
VS+A+ ++ +QVK V++ LP + +D ++ L + +G + KV + PG
Sbjct: 353 AEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGAR 412
Query: 316 KNRIGFVHFAERSSAMKA 333
+ GFV F ++A++
Sbjct: 413 RKNYGFVTFGTHAAAVEC 430
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 20/265 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G+E++IG +P D E +L G + +R+M +G+ F+++ E A
Sbjct: 402 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMDF-FGRTRGYGFISYFTQEDAH 460
Query: 158 KAIDKLNNTEFKGK-KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
A+ NN + + K KI S S RLFIGNIPR+ ++Q V+ + G+ +
Sbjct: 461 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 520
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQV 275
+ N S NRGF F+E+ +H+ A +R++++ N + V WA+P V+ QV
Sbjct: 521 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQV 580
Query: 276 KAVYVKNLPRNVTQDQLKKLF------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+Y+ NLP ++ ++LK H ++ K+ N FVHF R
Sbjct: 581 TKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI-----------NNFAFVHFTLRKY 629
Query: 330 AMKALKNTEKYELDGQALECSLAKP 354
A +A + + + + A+P
Sbjct: 630 AEEAFRKLTGLVMMDKLIGVEWARP 654
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 142/294 (48%), Gaps = 27/294 (9%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
GSE+++G IP D E +L + + + R+M + +GFAFVT+ NV A KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDF-TGNTRGFAFVTYYNVWDAQKAV 88
Query: 161 DKLNN----TEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
K N + + ++ S RLF GN+P++ +D++ + + G+ V
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGIVKVITYP 148
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-----TVSWADPR-NVDSS 270
+ NRGFAF+E+ +H A +R+K+ G P V WA+P VD
Sbjct: 149 ERNAHHFNRGFAFVEFQSHAIAAIARRKLLAD----GVIRPWGRKLYVDWAEPEPMVDPD 204
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+QVK +Y+KN+P T D+LK + ++ + + +++ F+HF ERS A
Sbjct: 205 VMTQVKVLYMKNVPTFWTLDRLKTYISK--TVGEIFI---ERIYKRDNYAFIHFDERSFA 259
Query: 331 MKALK----NTEKYELDGQALECSLAKPQADQKSAGGSVSEKP-SLLQNYPPHI 379
+ALK ++ +G+ +E A+P K ++E P + + PP +
Sbjct: 260 ERALKIFDSVSQYLSFNGKQIEVEWARPSCYSKK--NRINEVPDNFCTSVPPRL 311
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQK 200
N+G+AFVTF N A A+ +LNN E + G+ + S RLF+G IP+ E++
Sbjct: 5 NRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILT 64
Query: 201 VVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260
+ +V GV V + + S NRGFAF+EY +H+ A +R+K+ +L +A V
Sbjct: 65 EMRKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVD 124
Query: 261 WADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE--HHGRITKVVVPPAKPGQEKN 317
WA+P VD + VK +YV+NL T++ ++K F G + +V ++
Sbjct: 125 WAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERV--------KKIR 176
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
FVHF +R A+ A+ +DG +E +LAKP
Sbjct: 177 DYAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E K GK ++ + S RLF+GNIP++ G +++ + ++ G+ V + +
Sbjct: 5 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDK 64
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYV 280
NRGF F+EY +HK A +++++ K+ V WADP+ D S+VK +YV
Sbjct: 65 KKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYV 124
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
+NL ++V++D+LK+ FE +G++ +V ++ F+HF +R SA++A++
Sbjct: 125 RNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGK 176
Query: 341 ELDGQALECSLAKPQADQK 359
E+ +E SLAKP +D+K
Sbjct: 177 EIGASNIEVSLAKPPSDKK 195
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 140/276 (50%), Gaps = 32/276 (11%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELAS 157
+ E +IG + DA E D+ + + E T E+R+M G D +++GFAFV+F A
Sbjct: 208 NNGECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMGYDG-KSRGFAFVSFVEDGAAQ 266
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+ L+ +F KK+ + S R+FIG+IP++ + ++ ++ G T V
Sbjct: 267 RCKALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNGVS-TWVVNQSQ 325
Query: 218 MKNSSNNRGFAFIEYHNH------KCAEYSRQKMTNPNFK----------LGTNAPTVSW 261
N ++NRGFAF+E+ +H K +++ + FK G V W
Sbjct: 326 KDNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFGRYYQNVDW 385
Query: 262 ADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
ADP N D + S VK +YVK T++++K LFE +G + KV ++ N
Sbjct: 386 ADPENTPDDNVMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV--------KKINNFS 437
Query: 321 FVHFAERSSAMKALK--NTEKYELDGQALECSLAKP 354
FVHF ER SA+KA++ N + + D + ++ SLAKP
Sbjct: 438 FVHFVERDSALKAIEAMNGKNFGND-EVIDVSLAKP 472
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 325
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 131/260 (50%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+EV++G +P D E +L + +G + E+R+M S +G+AF F + +A A
Sbjct: 54 GAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALFEDSRVARIAC 112
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
++L+ E + G +I S RLF G +P+ + + ++++ G+T + + +
Sbjct: 113 ERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKILDGITDIYVYPSAQ 172
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVK 276
+ + NRGF F+E+ +H+ A +R+K+ L + V WADP +D V
Sbjct: 173 DRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVT 232
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
A++V+NL +++Q +++++ + + P ++ N FVH+ R +A +
Sbjct: 233 ALFVRNLALDMSQQKVREILYRYTNV------PILKLKKINHFAFVHYENREAAKTVMNI 286
Query: 337 TEKYE--LDGQALECSLAKP 354
E+ + ++ Q E AKP
Sbjct: 287 MERPDSIVEKQGWEIRWAKP 306
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 126/260 (48%), Gaps = 13/260 (5%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
GSE+++G +P D E +L + +G + E+R+M S +G+AF + +A +A
Sbjct: 53 GSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLDF-SGSTRGYAFALYETPRIAREAC 111
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+L+ E + G +I S RLF G +P+N + ++++ +T + L
Sbjct: 112 RRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKMLDDITDIYLYPSAH 171
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP---RNVDSSGASQVK 276
+ S NRGF F+E+ +H+ A +R+K+ L + V WADP +D +V
Sbjct: 172 DRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDEDIMERVT 231
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL +++Q ++ +F H + P ++ N F+H+ R +A +
Sbjct: 232 TLFVRNLALDISQQNVRGIFHRHTNV------PILKLKKINHFAFIHYENRQAAQIVMDI 285
Query: 337 TEK--YELDGQALECSLAKP 354
+K ++ Q E AKP
Sbjct: 286 MQKPGSIVEKQGWEICWAKP 305
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 43/258 (16%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ NRGF F+EY +HK A+QVK
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKS----------------------------------AAQVK 306
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 307 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDE 358
Query: 337 TEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 359 MNGKEIEGEEIEIVLAKP 376
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 27/286 (9%)
Query: 54 EEVIEEEVEE---EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
E EE V E +V+EEE Q+E E +K EL EV++GG+
Sbjct: 162 EHASEENVHEHLADVKEEE-----------QVEVIKETQKQKEL--------EVFVGGLD 202
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
+A+EHDLR +GE+TEVR+ + NKGFA + F VE +A+ +L N G
Sbjct: 203 KEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAELKNPVING 262
Query: 171 KK--IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGF 227
K+ I +T Q L++ NI ++W E L++ + G + L++D N N G
Sbjct: 263 KQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTNCGC 322
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR-NVDSSGASQVKAVYVKNLPR 285
AF+E+ +H ++ + +++ + G + P VS+A+ ++ +QVK V++ LP
Sbjct: 323 AFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPP 382
Query: 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +D ++ L + +G + KV + PG + GFV F ++A+
Sbjct: 383 SWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAV 428
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 27/286 (9%)
Query: 54 EEVIEEEVEE---EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
E EE V E +V+EEE Q+E E +K EL EV++GG+
Sbjct: 162 EHASEENVHEHLADVKEEE-----------QVEVIKETQKQKEL--------EVFVGGLD 202
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
+A+EHDLR +GE+TEVR+ + NKGFA + F VE +A+ +L N G
Sbjct: 203 KEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAELKNPVING 262
Query: 171 KK--IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGF 227
K+ I +T Q L++ NI ++W E L++ + G + L++D N N G
Sbjct: 263 KQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTNCGC 322
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR-NVDSSGASQVKAVYVKNLPR 285
AF+E+ +H ++ + +++ + G + P VS+A+ ++ +QVK V++ LP
Sbjct: 323 AFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPP 382
Query: 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +D ++ L + +G + KV + PG + GFV F ++A+
Sbjct: 383 SWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAV 428
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNW 193
M + ++KG+ FV F E A+KAI + + +GKKI S + LF GN+P++W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 194 GSEDLQKVVSEVGPGVTGVELV-------KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT 246
++ K+V + VT V+L + NRGFAF+++ +H A + + +
Sbjct: 61 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 120
Query: 247 NPNFKLGTN-APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV 305
+F LG + P V WA+ +D +++ +V NLP++ +D LKKLF G++ KV
Sbjct: 121 KSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKV 180
Query: 306 VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA------LECSLAKP 354
++ +K GQ +GFVHFA+RS A+K + + G + L+ ++AKP
Sbjct: 181 LL--SKKGQSP--VGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKP 231
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Query: 164 NNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L +
Sbjct: 86 NNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK 145
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVK 281
NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++VK ++V+
Sbjct: 146 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVR 205
Query: 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341
NL VT++ L+K F G++ +V ++ F+HF ER A+KA++ +
Sbjct: 206 NLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKD 257
Query: 342 LDGQALECSLAKPQADQK 359
L+G+ +E AKP DQK
Sbjct: 258 LEGENIEIVFAKP-PDQK 274
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 142/296 (47%), Gaps = 31/296 (10%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
GSE+++G IP D E +L + + + R+M + +GFAFVT+ NV A KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDF-TGNTRGFAFVTYYNVWDAQKAV 88
Query: 161 DKLNN----TEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
K N + + ++ S RLF GN+P++ +D++ + + G+ V
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGIVKVITYP 148
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-----TVSWADPR-NVDSS 270
+ NRGFAF+E+ +H A +R+K+ G P V WA+P VD
Sbjct: 149 ERNAHHFNRGFAFVEFQSHAIAAIARRKLLAD----GVIRPWGRKLYVDWAEPEPMVDPD 204
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV--VPPAKPGQEKNRIGFVHFAERS 328
+QVK +Y+KN+P T D+LK I+K V + + + N F+HF ERS
Sbjct: 205 VMTQVKVLYMKNVPTFWTLDRLKTY------ISKTVGEIFIERIYKRDN-YAFIHFDERS 257
Query: 329 SAMKALK----NTEKYELDGQALECSLAKPQADQKSAGGSVSEKP-SLLQNYPPHI 379
A +ALK ++ +G+ +E A+P K ++E P + + PP +
Sbjct: 258 FAERALKIFDSVSQYLSFNGKQIEVEWARPSCYSKK--NRINEVPDNFCTSVPPRL 311
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 27/286 (9%)
Query: 54 EEVIEEEVEE---EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
E EE V E +V+EEE Q+E E +K EL EV++GG+
Sbjct: 162 EHASEENVHEHLADVKEEE-----------QVEVIKETQKQKEL--------EVFVGGLD 202
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
+A+EHDLR +GE+TEVR+ + NKGFA + F VE +A+ +L N G
Sbjct: 203 KEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAELKNPVING 262
Query: 171 KK--IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGF 227
K+ I +T Q L++ NI ++W E L++ + G + L++D N N G
Sbjct: 263 KQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTNCGC 322
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPR-NVDSSGASQVKAVYVKNLPR 285
AF+E+ +H ++ + +++ + G + P VS+A+ ++ +QVK V++ LP
Sbjct: 323 AFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPP 382
Query: 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +D ++ L + +G + KV + PG + GFV F ++A+
Sbjct: 383 SWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAV 428
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 14/262 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E+Y+ IP + +E DL + G++ E+R+M S++N+ + FV + N E A
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI+ LN+ + + + S K RLF+GN+P++ + ++ + P +T +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+++ +H A ++++ T ++ + WA+P R++D SG +V
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI---GFVHFAERSSAMK 332
K ++V+N+ V +L LF V + P + + R+ FV FA+R A
Sbjct: 282 KMLFVRNIDLKVGTSELYNLF--------VRLVPRQDIIKITRVREFAFVEFAKREQAEM 333
Query: 333 ALKNTEKYELDGQALECSLAKP 354
+ + Y L L+ A P
Sbjct: 334 VMHAVQGYVLTQYPLDIEWAMP 355
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 14/262 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E+Y+ IP + +E DL + G++ E+R+M S++N+ + FV + N E A
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI+ LN+ + + + S K RLF+GN+P++ + ++ + P +T +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + NRGFAF+++ +H A ++++ T ++ + WA+P R++D SG +V
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI---GFVHFAERSSAMK 332
K ++V+N+ V +L LF V + P + + R+ FV FA+R A
Sbjct: 282 KMLFVRNIDLKVGTSELYNLF--------VRLVPRQDIIKITRVREFAFVEFAKREQAEM 333
Query: 333 ALKNTEKYELDGQALECSLAKP 354
+ + Y L L+ A P
Sbjct: 334 VMHAVQGYVLTQYPLDIEWAMP 355
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 41/266 (15%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP G EV+IG IP D E +L + IG + R+M + + N+GF F + N E
Sbjct: 100 PPRGCEVFIGKIPRDCFEDELIPVFEQIGPIYMFRLMM-ELNGINRGFGFCVYTNREDTK 158
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+A+ +LN +F+ ++ E++ + V GV V
Sbjct: 159 RAVQELNIMKFEKER--------------------QSEEEILSEMKRVTDGVKDVISYPS 198
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVK 276
+ + + NRGFAFIEY +HK A +R+K+ + L + V WA+P R V+ S+VK
Sbjct: 199 VTDKTKNRGFAFIEYGSHKAAAMARRKLLPGHIHLWGHQIAVDWAEPEREVNEDIMSKVK 258
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHG--------RITKVVVPPAKPGQEKNRIGFVHFAERS 328
+YV+NL + T++ L+ F R+ K+ + F+HF ER
Sbjct: 259 ILYVRNLMLSTTEESLRDSFIKAAGGDPNSVERVKKI-----------SDYAFIHFRERE 307
Query: 329 SAMKALKNTEKYELDGQALECSLAKP 354
A++ L +DG +E + AKP
Sbjct: 308 QALQCLHTLNDTYIDGSKIEVTWAKP 333
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 14/262 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +G EVY IP + +E +L + G + E+R+M ++ +N+ + FV + N E A
Sbjct: 109 PGYGCEVYAKRIPANFTEVNLVPIFERCGRLYEIRLMMDYNN-QNRRYCFVRYTNEEDAR 167
Query: 158 KAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI+ LN+ +G + I S K RLF+ N+P+ + ++ + P +T + +
Sbjct: 168 LAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKTIEVSFRSLFPEMTRLVMHN 227
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ + + NRGFAF+++ +H A ++++ T ++ + WA+P R +D S A +V
Sbjct: 228 RIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRALDHSNADEV 287
Query: 276 KAVYVKNLPRNVTQDQLKKLFEH---HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
K ++V+N+ V+ +L LF I K+ FV F R A
Sbjct: 288 KTLFVRNVDLQVSTKELYMLFSRVVDRQDIVKI--------SRVREFAFVEFTRRFHAAF 339
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+ + ++L+G L+ A P
Sbjct: 340 AMHAVQGFQLNGYTLDIEWAMP 361
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 11/192 (5%)
Query: 171 KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--DMKNSSNNRGFA 228
K ++ + S A RLFIGNIP++ E++ E GVT + D S NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVYVKNLPRNV 287
F+++ +HK A +++K+ + V WA+ + D ++VK +YV+NL V
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAV 128
Query: 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
T++QLK++F HG + V ++ F+HF ER A+KA++ L+G +
Sbjct: 129 TEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPI 180
Query: 348 ECSLAKPQADQK 359
E SLAKPQ+D+K
Sbjct: 181 EISLAKPQSDKK 192
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 2/186 (1%)
Query: 80 MQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS 139
M+ E+ K + L P G+E++IG +P D E +L +S G V E+R+M +
Sbjct: 54 MKQENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLDFNG 113
Query: 140 SENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDL 198
+ N+GF FVT++ + A+ +NN E KG+ + S RLF+G IP++ +++
Sbjct: 114 N-NRGFCFVTYQTRNESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEI 172
Query: 199 QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258
+ + +V GV V + + S NRGF+F+EY +HK A +R+K+ +L +
Sbjct: 173 MEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIA 232
Query: 259 VSWADP 264
V WA+P
Sbjct: 233 VDWAEP 238
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++GG+ DA+E DLR +GEV E+R+M + +NKGFAF+ + VE A +A +
Sbjct: 36 EVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTE 95
Query: 163 LNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQ-KVVSEVGPGVTGVELVKDMKNS 221
L N + GK S SQ LF+GNI + W E L+ K+ S + + LV+D +N
Sbjct: 96 LKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENE 155
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-APTVSWAD 263
NRG AFIE+ A + +++ + LGT+ VS+A+
Sbjct: 156 GMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAE 198
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 53/261 (20%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFVT+ E A AI
Sbjct: 61 CEVFVGKIPRDMYEDEL--VFERAGKIHEFRLMM-EFSGENRGYAFVTYTTKEEAQLAIR 117
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 118 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKVTEGVVDVIVYPSATD 177
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYV 280
+ NRGFAF++Y +H+ A A +VK ++V
Sbjct: 178 KTKNRGFAFVKYESHRAA---------------------------------AMRVKVLFV 204
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ +K F KPG ++ FVHF R A+ A+
Sbjct: 205 RNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAMS 253
Query: 336 NTEKYELDGQALECSLAKPQA 356
+DG ++E +LAKP +
Sbjct: 254 VISGKCIDGASIEVTLAKPHS 274
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 175 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 234
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 235 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 294
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 295 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 346
Query: 349 CSLAKP 354
LAKP
Sbjct: 347 IVLAKP 352
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 18/296 (6%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAID 161
EV +GG+P DA+E D+ G+V EVR+++ D NKGFAFV F A A D
Sbjct: 91 EVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAAD 150
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVELVKDMKN 220
+ KG+ + A L + NI +W +DL +++ + + + LV+D +
Sbjct: 151 DVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPER 210
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVSWADPRNVDSSGASQVKAVY 279
NRG+AF+++ + + K+ N + LGT+ VS++ ++D +VK+V+
Sbjct: 211 KGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDDKIMEKVKSVF 270
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP + +D+++++F G I + + ++ GF+ F R SA+ + K
Sbjct: 271 LDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSK 330
Query: 340 ---YELDGQA-LECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY--GLAGGTYG 389
E G+ ++ SL +P+ + K Q P +G G G +YG
Sbjct: 331 GGIVEGSGKVRIKASLQRPRP---------TLKKHSWQGITPMLGIRRGFIGKSYG 377
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 11/175 (6%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RLFIG IP+ E++ + +++V GV V + + NRGFAF+EY +H+ A +R
Sbjct: 107 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 166
Query: 243 QKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH-- 299
+K+ +L + V WA+P +VD VK +YV+NL T+D +KK F
Sbjct: 167 RKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNP 226
Query: 300 GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
G + +V ++ FVHFA R A+ A+ N EL+G LE +LAKP
Sbjct: 227 GCVERV--------KKIRDYAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 273
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 12/295 (4%)
Query: 48 VEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIG 107
E+E E+VI EE EEV E+E+ + ++ E + KK+ EV++
Sbjct: 65 TEDEPAEDVIMEEPSEEVIMEDEEPTPSPAEEVVGEGKRRKKRV---------DYEVFVS 115
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNT 166
G+P DA+E D+ G++ EVR+++ D NKGFAFV F A A + L
Sbjct: 116 GLPQDAAEEDVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAANDLREA 175
Query: 167 EFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVELVKDMKNSSNNR 225
KGK + L + NI +W +DL +K+ + + L++ NR
Sbjct: 176 TIKGKACGICKNSETETLHLRNICFDWSKDDLAEKLKPFKLENLDRINLIEHPDRKGKNR 235
Query: 226 GFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVSWADPRNVDSSGASQVKAVYVKNLP 284
G+AF+++ H A + K+ + LGT++ +S+++ + D +VK+V++ +P
Sbjct: 236 GYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSNTLSQDDEIMEKVKSVFLDGVP 295
Query: 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ +D+++++F G I + + + GF+ F R SA+ +K K
Sbjct: 296 PHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCIKMVNK 350
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 18/296 (6%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAID 161
EV +GG+P DA+E D+ G+V EVR+++ D NKGFAFV F A A D
Sbjct: 91 EVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAAD 150
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDL-QKVVSEVGPGVTGVELVKDMKN 220
+ KG+ + A L + NI +W +DL +++ + + + LV+D +
Sbjct: 151 DVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPER 210
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVSWADPRNVDSSGASQVKAVY 279
NRG+AF+++ + + K+ N + LGT+ VS++ ++D +VK+V+
Sbjct: 211 KGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDDKIMEKVKSVF 270
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
+ LP + +D+++++F G I + + ++ GF+ F R SA+ + K
Sbjct: 271 LDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSK 330
Query: 340 ---YELDGQA-LECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY--GLAGGTYG 389
E G+ ++ SL +P+ + K Q P +G G G +YG
Sbjct: 331 GGIVEGSGKVRIKASLQRPRP---------TLKKHSWQGITPMLGIRRGFIGKSYG 377
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 209 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 268
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 269 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 328
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 329 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 380
Query: 349 CSLAKP 354
LAKP
Sbjct: 381 IVLAKP 386
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDDKKKNRGFCF 133
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 193
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 194 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 349 CSLAKP 354
LAKP
Sbjct: 246 IVLAKP 251
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 158 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 217
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 218 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 277
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 278 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 329
Query: 349 CSLAKP 354
LAKP
Sbjct: 330 IVLAKP 335
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 193
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 194 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 349 CSLAKP 354
LAKP
Sbjct: 246 IVLAKP 251
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 193
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 194 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 349 CSLAKP 354
LAKP
Sbjct: 246 IVLAKP 251
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 133
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 134 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 193
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 194 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 349 CSLAKP 354
LAKP
Sbjct: 246 IVLAKP 251
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
GK + S A RLF+G+IP+N E++ + S+V G+ V L + NRGF F
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 69
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVT 288
+EY +HK A +R+++ + K+ N TV WADP D ++VK ++V+NL VT
Sbjct: 70 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVT 129
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
++ L+K F G++ +V ++ FVHF +R +A+KA+ E++G+ +E
Sbjct: 130 EEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 181
Query: 349 CSLAKP 354
LAKP
Sbjct: 182 IVLAKP 187
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PPHG+E++I +P D E +L +IG + EVR + S N+G+AF+ + + A
Sbjct: 23 PPHGTEIFIKNLPDDVFEIELFQIFSTIGRIYEVR-LPVHWSGINRGYAFIRYTKISEAD 81
Query: 158 KAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI + E + K+ I+ S RLF+ +P + SE++Q + V V V +
Sbjct: 82 AAIKAFDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYP 141
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMT-NPNFKLGTNAPTVSWADPR-NVDSSGASQ 274
++N S RG+AF+E+ +H+ A +++ +T + F L +WA+P ++ S
Sbjct: 142 TLENPSIFRGYAFVEFKSHRDAAIAKRILTPDVCFNLFEKKCIAAWANPLPFLNESILKT 201
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEH 298
+ ++++N+P+ + + +KK+ E+
Sbjct: 202 INILFIRNVPKEIKSNTIKKIIEN 225
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 29/187 (15%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN----KGFAFVTF---RNV 153
+ +++ +P+D + +++ C + V V+ + + EN +G+AFV F R+
Sbjct: 106 NTRLFLSCVPNDKTSEEIQ--CDLLTVVDNVKKVYVYPTLENPSIFRGYAFVEFKSHRDA 163
Query: 154 ELASKAI--DKLNNTEFKGKKIRCSTSQAKYR----------LFIGNIPRNWGSEDLQKV 201
+A + + D N F+ K I + + LFI N+P+ S ++K+
Sbjct: 164 AIAKRILTPDVCFNL-FEKKCIAAWANPLPFLNESILKTINILFIRNVPKEIKSNTIKKI 222
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
+ + ++ VK + N FAF+ + NH+ A+++ + + LG+ + W
Sbjct: 223 IENILED-NSLQKVKRLNN------FAFLTFRNHEKAKFALNYIKDHPSLLGSEKIQIEW 275
Query: 262 ADPRNVD 268
A PR+V+
Sbjct: 276 AVPRDVN 282
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 7/259 (2%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+EV++ G+ E D+R GE+T+VR+ + ++KG+ FV +R A K +
Sbjct: 267 TEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPSQAKKVVA 326
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP-GVTGVELVKDMKN 220
+ + K + ++ + NI + W ED+ K++ + G + V L+ D N
Sbjct: 327 EFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDN 386
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQVKAVY 279
N G+AF+E + A + K++ F+ N TV+WA + QVK+++
Sbjct: 387 PGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNI-TVAWAKAMSDRDEEMQQVKSIF 445
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339
V+ +P + +L ++F +G I + V+ +++ FVH+ +A+ L+ +K
Sbjct: 446 VEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELFDK 505
Query: 340 YELDGQA----LECSLAKP 354
EL G ++ SL KP
Sbjct: 506 EELTGNGSKVNIKVSLDKP 524
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-IRCSTSQAKYRLFIGNIPRNWGSED 197
S N+G+AFV + A+ A+ +LN E + ++ I S RLF+GNIP+ ED
Sbjct: 8 SGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNIPKTKTKED 67
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
+++ +S+ + V L K+ + NRGFAF+E+ H+ A +R+ + +L
Sbjct: 68 VREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGCVRLWDQEV 127
Query: 258 TVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQ 314
V WA+P ++D +VK +YV+N T D ++K+FE + ++ +V +
Sbjct: 128 MVDWAEPEPDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV--------K 179
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
+ F+HF ER A A+ + ++DG +E AKP
Sbjct: 180 KIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKP 219
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 10/203 (4%)
Query: 154 ELASKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
E A +A+ ++ E GK + S A RLF+G+IP+N E++ + S+V G+ V
Sbjct: 21 EAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDV 80
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSG 271
L + NRGF F+EY +HK A +R+++ + K+ N TV WADP D
Sbjct: 81 ILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 140
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+
Sbjct: 141 MAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAV 192
Query: 332 KALKNTEKYELDGQALECSLAKP 354
KA+ E++G+ +E LAKP
Sbjct: 193 KAMDEMNGKEIEGEEIEIVLAKP 215
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 13/240 (5%)
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQ 179
+ +G + E+R+M S +G+AF + +A +A L+ E + G +I S
Sbjct: 3 LLEKVGRLLELRLMLD-FSGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSM 61
Query: 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
RLF G +P++ E+ ++++ G+ V L + + NRGF F+E+ +H+ A
Sbjct: 62 DNCRLFFGGVPKSKTKEEFLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAA 121
Query: 240 YSRQKMTNPNFKLGTNAPTVSWADPR---NVDSSGASQVKAVYVKNLPRNVTQDQLKKLF 296
+R+K+ L + V WADP VD V A++V+NL ++Q +++++F
Sbjct: 122 MARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVF 181
Query: 297 EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECSLAKP 354
H + P ++ N F+H+ R +A + +K ++ + E AKP
Sbjct: 182 HRHTNV------PILKLKKINHFAFIHYENRGAAQAVMDIMQKSNSVVEKEGWEIRWAKP 235
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + H+ +E L D + +V +R+ + + + G+A+V F N + A+ A++
Sbjct: 23 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAME 82
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ LQ+ + GP V +
Sbjct: 83 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP-VLSCK 141
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN---VDSS 270
+ D N+ ++G+ F+++ N + A+ + ++ N L + R+ ++++
Sbjct: 142 VAVD--NNGQSKGYGFVQFENEEAAQSAINRL---NGMLINDKEVFVGRFVRHQERIEAT 196
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
G+ + VYVKNL + + LKK F ++G IT +V + G+ K GFV+F SA
Sbjct: 197 GSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKG-FGFVNFQSPDSA 255
Query: 331 MKAL 334
A+
Sbjct: 256 AAAV 259
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 35/286 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L++ S G V ++ ++ ++KG+ FV F N E A AI+
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAV-DNNGQSKGYGFVQFENEEAAQSAIN 169
Query: 162 KLNNT------EFKGKKIRC-----STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN F G+ +R +T K+ +++ N+ EDL+K S G +
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYG-SI 228
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPT 258
T ++KD S ++GF F+ + + A + +K+ F + G
Sbjct: 229 TSAIVMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAE 286
Query: 259 VS--WADPRNVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
+ + RN S ++KA +Y+KNL + ++LK+LF G IT V + G
Sbjct: 287 LKARFEQERN---SRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGL 343
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F+ A +AL + + L ++A+ + ++K+
Sbjct: 344 SKGS-GFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKA 388
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + S+ DL+ F + G +T +MK + S ++KGF FV F++ + A+
Sbjct: 199 PKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAA 257
Query: 159 AIDKLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWG 194
A++KLN T F K +Q K L++ N+
Sbjct: 258 AVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKID 317
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
E L+++ SE G +T +++ D + S GF
Sbjct: 318 DEKLKELFSEFG-SITSCKVMLDQQGLSKGSGF 349
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
QVK +YVKNLP N +++++K++FE HG +TKVV+PPAK G +++ GFVHFAERSSA+KA
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFAERSSALKA 64
Query: 334 LKNTEKYELDGQALECSL 351
+K +EKYE +G +
Sbjct: 65 VKGSEKYEFNGNVFSLFI 82
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN- 266
G+ V + + NRGF F+EY +HK A +++++ K+ V WADP+
Sbjct: 13 GLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEE 72
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
D S+VK +YV+NL + +T++ LK+ FE +G + +V ++ FVHF +
Sbjct: 73 PDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV--------KKIKDYAFVHFED 124
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
R A+KA++ + EL G LE SLAKP +D+K
Sbjct: 125 RDCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 157
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 6/222 (2%)
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDL 198
+ +NKG+AF+ F A +A+ K E GK+ + + +F+GNI +NW +ED+
Sbjct: 5 TGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDV 64
Query: 199 QKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
K++ E+G + V ++ D N NRGFAF+E +K A+ + +K+ +
Sbjct: 65 VKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNI 124
Query: 258 TVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
V+WA+P N D +VK VY + +P + +++++ F+ G I VV+ ++
Sbjct: 125 KVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKR 184
Query: 317 NRIGFVHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKP 354
FV + R +A++ +++ + L D + ++ SLAKP
Sbjct: 185 KDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++GG+ A E DLR + EVT+VR+ DS K AF+TF VELA +AI +
Sbjct: 72 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRL--SWDSESKKRVAFLTFATVELARRAICE 129
Query: 163 LNNTEFKGKKIRCSTSQAK---YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--- 216
+++ GK RC T+Q + L++ NI + W +DL+ ++E G V E++
Sbjct: 130 ISDPVINGK--RCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYG--VKNYEILTLNP 185
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG----A 272
+N NRG+A +++ + K A + + + N G N + AD +SG
Sbjct: 186 ARENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQN--RAAKADFSRKYASGNDEIM 243
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
S VK VY+ +PR ++ +KK + GRI KV + P + +V F
Sbjct: 244 SHVKRVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTF 295
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
H VY+ GIP E ++ + G + +V + + S+ + +VTF E A+
Sbjct: 245 HVKRVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATC 304
Query: 160 IDKLN--NTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
++ +N F+ K++ AK R+ IP ++ V E+G G
Sbjct: 305 VNGVNVDGLYFRDKRVNAWADLAKPRV---RIPSEGTAQASSSVAQEIGLG 352
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 164 NNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSS 222
NN E + GK I S RLFIG IP+ E++ + +V GV V + + +
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT 119
Query: 223 NNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
NRGFAF+EY +H+ A +R+K+ F+L
Sbjct: 120 KNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 16/258 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP +++ I ++ +L+D S G+VT+ ++K K + E KGF FV F ++
Sbjct: 49 PPLEYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVH 108
Query: 158 KAIDKLNNTEFKG------KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG--V 209
A+D F+ + ++ + K L++GNIPR +D++ + E V
Sbjct: 109 AALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQEATTTYEV 168
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-EYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
T +L ++ S +G+ + + +HKCA + R + P F L N V A+PR +
Sbjct: 169 TKFKLCTTLEGES--KGYGWATFKDHKCAVQGMRLLQSTPVFGLYLN---VHMAEPRTQE 223
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
++VK+++V+ + + +K F KVV+P + FVHFA R
Sbjct: 224 EDMLARVKSLFVRGVSPTTNAEAMKAFFGDG--CEKVVIPLDVTTRAVLGHAFVHFATRQ 281
Query: 329 SAMKALKNTEKYELDGQA 346
A A++ + L+G++
Sbjct: 282 QAEAAMQRCQNATLEGES 299
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + H+ +E L D + +V +R+ + + + G+A+V F N + AS A++
Sbjct: 33 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAME 92
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ LQ+ + G V +
Sbjct: 93 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFG-SVLSCK 151
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN---VDSS 270
+ D N+ ++G+ F+++ N + A+ + ++ N L + R+ ++++
Sbjct: 152 VAVD--NNGQSKGYGFVQFENEEAAQSAINRL---NGMLINDKEVFVGRFVRHQERIEAT 206
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
G+ + VYVKNL + + LKK F ++G IT +V + G+ K GFV+F SA
Sbjct: 207 GSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKG-FGFVNFQSPDSA 265
Query: 331 MKAL 334
A+
Sbjct: 266 AAAV 269
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 35/286 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L++ S G V ++ ++ ++KG+ FV F N E A AI+
Sbjct: 121 ANVFIKNLDTSIDNKALQETFASFGSVLSCKVAV-DNNGQSKGYGFVQFENEEAAQSAIN 179
Query: 162 KLNNT------EFKGKKIRC-----STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN F G+ +R +T K+ +++ N+ EDL+K S G +
Sbjct: 180 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYG-AI 238
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPT 258
T ++KD S ++GF F+ + + A + +K+ F + G
Sbjct: 239 TSAIVMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAE 296
Query: 259 VS--WADPRNVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
+ + RN S ++KA +Y+KNL + ++LK+LF G IT V + G
Sbjct: 297 LKARFEQERN---SRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGL 353
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F+ A +AL + + L ++A+ + ++K+
Sbjct: 354 SKGS-GFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKA 398
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + S+ DL+ F + G +T +MK + S ++KGF FV F++ + A+
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAA 267
Query: 159 AIDKLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWG 194
A++KLN T F K +Q K L++ N+
Sbjct: 268 AVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKID 327
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
E L+++ SE G +T +++ D + S GF
Sbjct: 328 DEKLKELFSEFG-SITSCKVMLDQQGLSKGSGF 359
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 18/234 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + HD ++ L D IG+V VRI + S ++ G+ +V F N A+KA+D
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K IR S +FI N+ R + L S G + +
Sbjct: 84 VLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S +G+ F+++ N + A+ + K+ N L + P R D A
Sbjct: 143 IAMDASGLS--KGYGFVQFENEESAQSAIDKL---NGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
++ VYVKNL +VT D LK F +G IT VV G+ K GFV+F
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC-FGFVNF 250
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RLF+G IP++ E++ + +V V V + + + NRGFAF+EY HK A +R
Sbjct: 245 RLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYETHKAAAMAR 304
Query: 243 QKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301
+K+ + +L N V WA+P +VD +VK +YV+NL +++ L+ F +G+
Sbjct: 305 RKLVSGRVQLWGNPIAVDWAEPEEDVDDDIMKEVKVLYVRNLLIETSEESLRAHFSQYGQ 364
Query: 302 ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345
+ +V ++ FVHF ER SA A+K LDG+
Sbjct: 365 VERV--------KKIRDYAFVHFVERESADAAVKAGCSQRLDGE 400
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 18/234 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + HD ++ L D IG+V VRI + S ++ G+ +V F N A+KA+D
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K IR S +FI N+ R + L S G + +
Sbjct: 84 VLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S +G+ F+++ N + A+ + K+ N L + P R D A
Sbjct: 143 IAMDASGLS--KGYGFVQFENEESAQSAIDKL---NGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
++ VYVKNL +VT D LK F +G IT VV G+ K GFV+F
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC-FGFVNF 250
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 196 EDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
E + + S+V G+T V L + NRGF F+EY +HK A +R+++ + K+ N
Sbjct: 2 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN 61
Query: 256 APTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
TV WADP + D ++VK ++V+NL VT++ L+K F G++ +V +
Sbjct: 62 VGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------K 113
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
+ F+HF ER A+KA++ +L+G+ +E AKP DQK
Sbjct: 114 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQK 157
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 19/263 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D SE L + +G V +RI + + + +A++ + N A +A+D
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LNNT KGK R SQ L FI N+ + + L S G + +
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILSCK 126
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D N+S +GF F+ Y + + AE + K+ + N V ++ GA+
Sbjct: 127 VVTDETNTS--KGFGFVHYESQESAEKAIAKVNG----MMINNQKVFVGPFKSSKERGAT 180
Query: 274 Q---VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
Q V++KNL +V++ QL L + HG+IT + + + G+ K GF +F +A
Sbjct: 181 QEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKG-FGFANFEHADAA 239
Query: 331 MKALKNTEKYELDGQALECSLAK 353
A++N G+ + A+
Sbjct: 240 KGAVENENGKMFSGKVIYVGRAQ 262
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 26/269 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ +++ +KGF FV + + E A KAI K+
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVT-DETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 164 NNT----------EFKGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
N FK K R +T + KY +FI N+ + + L ++ G +T +
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG-KITNL 215
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
++ D K S GFA E+ A+ ++ + N N K+ + + ++
Sbjct: 216 CIMTDEKGKSKGFGFANFEH-----ADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Query: 273 SQVKA--------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
+ K +Y+KNL ++ D+L+ F +G IT V G GFV +
Sbjct: 271 LKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCY 330
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAK 353
+ A KA+ + + L + A+
Sbjct: 331 STPDEASKAVAEMHGRMVGSKPLYVAFAQ 359
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI + LR + G +T ++M+ S +KGF FV + + ASKA
Sbjct: 280 QGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKA 339
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ +++ K + + +Q K
Sbjct: 340 VAEMHGRMVGSKPLYVAFAQRK 361
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 11/248 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEV++G IP S+ +L G V + M D+ NK FAF+++ N E A+
Sbjct: 28 PPPGSEVFVGNIPSVISDDELIFIFSEAGRVYRFQRMID-DNGNNKPFAFISYHNDEDAN 86
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KA+ + K +K+ S RL+ GNIPR ED+ + + V ++
Sbjct: 87 KAVLFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTKEDVMLNLLNFIEKIVKVLVLP 146
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA--DPRNVDSSGASQ 274
N++ NRG+AF+++ +H A ++++++ F G TV WA +P V Q
Sbjct: 147 SRCNTALNRGYAFVDFVSHTLAAFAKRQLELGLF-WGGRHITVEWAYREPL-VPPFIFLQ 204
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
+K + KN+P + ++ +K IT V + +K+ FVHF +A A+
Sbjct: 205 IKCLIFKNIPIDCSRCVFRKFLSLFVHITTV-----RRIYKKDSHAFVHFQSWEAAEIAI 259
Query: 335 KNTEKYEL 342
K + L
Sbjct: 260 KTLRSHIL 267
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 20/266 (7%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+ +Y+G + SE L D IG V+ +R+ + ++ + G+A+V F + E KAI
Sbjct: 37 GASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAI 96
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
++LN T KGK R SQ L +I N+ ++ L + S G +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSG 271
++ D ++ +RGF F+ + N A R + N L + V+W + S
Sbjct: 156 KVATD--DNGVSRGFGFVHFENESDA---RDAIEAVNGMLMNDQEVYVAWHVSKKDRQSK 210
Query: 272 ASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
+VKA +YVKN+ +Q++ ++LF +G+IT V+ G+ + GF++F +
Sbjct: 211 LEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRG-FGFINFEDH 269
Query: 328 SSAMKALKNTEKYELDGQALECSLAK 353
S+A +A+ + + GQ L A+
Sbjct: 270 STAARAVDELNESDFRGQTLYVGRAQ 295
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD-MKNSSNNRGFAFIEYHNHKCAEYSR 242
L++G + + L + S +G V+ + + +D + N+S G+A++ +H+H E R
Sbjct: 40 LYVGELDPSVSEALLYDIFSPIG-SVSSIRVCRDAITNTS--LGYAYVNFHDH---EAGR 93
Query: 243 QKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH 299
+ + N+ L P + W+ DP ++ G+ + Y+KNL + L + F
Sbjct: 94 KAIEQLNYTLIKGKPCRIMWSQRDP-SLRKKGSGNI---YIKNLHPAIDNKSLHETFSTF 149
Query: 300 GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
G I V G + GFVHF S A A++ ++ Q + + + D++
Sbjct: 150 GNILSCKVATDDNGVSRG-FGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQ 208
Query: 360 S 360
S
Sbjct: 209 S 209
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + + L+D G +T V++MK + S ++GF FV F E A+KA
Sbjct: 320 QGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGS-SRGFGFVCFSTPEEATKA 378
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 379 ITEKNQQLVAGKPLYVAIAQRK 400
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 6/141 (4%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G+EV++GG+P A+E LR+ S GE+ +VRIMK ++ +KG+ FV F E A+ A
Sbjct: 73 RGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQNG-HSKGYGFVRFSKREYANTA 131
Query: 160 IDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL-VKDM 218
+ N E +GK++ S + +F GN+ + W SE+ ++++ + V V+L +
Sbjct: 132 KRQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIHKTFKDVVSVDLAMASN 191
Query: 219 KNSSN----NRGFAFIEYHNH 235
+ SSN NRGFAF+ + +H
Sbjct: 192 RGSSNKRNINRGFAFVRFTSH 212
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
V+V LPR+ T+ L+++F G I V + + G K GFV F++R A A +
Sbjct: 77 VFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQNGHSKG-YGFVRFSKREYANTAKRQK 135
Query: 338 EKYELDGQALECSLAKPQ 355
EL G+ L+ L+ Q
Sbjct: 136 NGIELQGKRLDVDLSMDQ 153
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 33/304 (10%)
Query: 61 VEEEVEEEE------EDADAGKSGDMQI-EDEDEKKKHAELLALPPHGSEVYIGGIPHDA 113
VE++VE++E E AD KS + + +D + K + + A +Y+G +
Sbjct: 18 VEDKVEKKEAASPASEKADGAKSEEAENGKDTKDSKDNEQTFA------SLYVGDLDPSV 71
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
+E DL + +G+V+ +R+ + + ++ +A+V ++ E A A+D L + KGK+
Sbjct: 72 TESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQC 131
Query: 174 RCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNR 225
R SQ +FI N+ + ++ L S G + ++ D +++
Sbjct: 132 RIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGK-ILSCKIATD--EHGHSK 188
Query: 226 GFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVDSSGASQVKAVYV 280
GF F+ Y + AE ++ + N N L N AP + D + VYV
Sbjct: 189 GFGFVHYDD---AESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYV 245
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340
KN +T+DQL+++FE +G++T +P G+ + GFV+F + A KA+ +
Sbjct: 246 KNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARG-FGFVNFEDHXEAAKAVDALNEK 304
Query: 341 ELDG 344
EL+G
Sbjct: 305 ELEG 308
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 32/277 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
V+I + D L D + G++ +I + +KGF FV + + E A AI+
Sbjct: 150 VFIKNLHPDIDNKTLYDTFSTFGKILSCKIAT-DEHGHSKGFGFVHYDDAESAKAAIENV 208
Query: 163 ----LNNTEFK-----GKKIRCSTSQAKYRLFIGNIPRNWG---SEDLQKVVSEVGPGVT 210
LNN E +K R S Q + F +N+G +ED + + E VT
Sbjct: 209 NGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVT 268
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT--------------NA 256
L D N RGF F+ + +H A + + + G +
Sbjct: 269 STYLPTD--NEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREES 326
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
W R S V ++VKNL + +LK+ F +G+IT V G+ +
Sbjct: 327 LRKQWQQARQERISKYQGVN-LFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSR 385
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV + + A +A+ + + G+ L +LA+
Sbjct: 386 G-FGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQ 421
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 7/177 (3%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + DL ++ S+VG V+ + + +B + + +A++ Y + AE++
Sbjct: 62 LYVGDLDPSVTESDLYEIFSKVGQ-VSSIRVCRBAV-TKKSLCYAYVNYQKREEAEHALD 119
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
+ + K S DP ++ G V ++KNL ++ L F G+I
Sbjct: 120 TLAFCDIKGKQCRIMWSQRDP-SMRKKGTGNV---FIKNLHPDIDNKTLYDTFSTFGKIL 175
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ + G K GFVH+ + SA A++N L+ + + P+ D++S
Sbjct: 176 SCKIATDEHGHSKG-FGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRES 231
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E++ + + VY+ + +E LR+ ++ G+VT + + +
Sbjct: 224 IPRKDRESKMQEMIK---NFTNVYVKNFGPEMTEDQLREMFEAYGKVTST-YLPTDNEGK 279
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKI----------------RCSTSQA----- 180
+GF FV F + A+KA+D LN E +G +I R QA
Sbjct: 280 ARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERI 339
Query: 181 -KYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
KY+ LF+ N+ L++ + G +T +++ + ++ +RGF F+ Y
Sbjct: 340 SKYQGVNLFVKNLDDTIDDTKLKEEFAPYGK-ITSAKVMTN--DAGKSRGFGFVCY 392
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 83/137 (60%), Gaps = 9/137 (6%)
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKN 282
NRGF F+EY +HK A +++++ K+ V WADP+ D S+VK +YV+N
Sbjct: 2 NRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEGTMSKVKVLYVRN 61
Query: 283 LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
L ++++++LK+ FE++GR+ +V ++ FVH+ +R + + A+++ + ++
Sbjct: 62 LTHDISEEKLKEHFENYGRVERV--------KKIKDYAFVHYEDRDNTVLAMRDLDGKDI 113
Query: 343 DGQALECSLAKPQADQK 359
G +E SLAKP +D+K
Sbjct: 114 GGSCIEVSLAKPPSDKK 130
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 16/243 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+G + H+ SE L + G V +R+ + + + G+A+V + + + A++A++
Sbjct: 24 TSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALE 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ L S G G+ +
Sbjct: 84 LLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFG-GILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D +S ++G+ F+++ + A+ + +K+ N K P V + R++ S G
Sbjct: 143 VATD--SSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQE-RDL-SGG 198
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
S+ VYVKNL N T D+LKK+F +G I+ VV G+ K GFV+F A
Sbjct: 199 VSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKC-FGFVNFELADDAA 257
Query: 332 KAL 334
KA+
Sbjct: 258 KAV 260
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 133/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E+ L ++G V +RI + + + G+A+V F +V A +A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N +G+ IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN---PNFKLGTNAPTVSWADPRNVDSS 270
K M + +RG+ F+ + N A+ + ++M +F+L P + D +
Sbjct: 128 --KVMCDDQGSRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFV-GPFKNRRDREAELQN 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN + ++LK+ F H+G+I V V G+ K GFV F +A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKG-FGFVSFDTHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
+A+ E+ GQ + A+ +A++++
Sbjct: 244 KRAVDIVNGREIFGQQVFVGRAQKKAERQA 273
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 41/280 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G++ ++M D ++G+ FV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSVFGKILSSKVMC--DDQGSRGYGFVHFQNQAAADRAIEEM 157
Query: 164 NNTE----------FKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N FK ++ R + Q K F +N+G E L++ S G V
Sbjct: 158 NGVLLKDFRLFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIV 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYS------RQKMTNPNF------KLGTNA 256
+ VK M +SS ++GF F+ + H+ A+ + R+ F K A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ R + S + +YVKNL + +++L+K F G I +V K QE+
Sbjct: 274 ELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRV-----KVMQEE 328
Query: 317 NR---IGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
R G + F+ A +A+ L + + +LA+
Sbjct: 329 GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIALAQ 368
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ + + AEL + +YI + + L++F G++ V++M S ++KG
Sbjct: 173 KNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMT-DSSGKSKG 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F E A +A+D +N E G+++ +Q K
Sbjct: 232 FGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVR 291
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
++++ N+ E L+K S G + VK M+ +RGF I +
Sbjct: 292 GTKIYVKNLDETIDEEKLRKAFSSFGSIIR----VKVMQEEGRSRGFGLICF 339
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 19/153 (12%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P G EV++G IP D E ++ + IG + E+R+M D +N+GF FV F A
Sbjct: 68 IPTKGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFDG-KNRGFCFVMFTERSHA 126
Query: 157 SKAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+AI +LNN E KG+ + +S RLF+G IP++ E E++
Sbjct: 127 RQAISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKE----------------EIM 170
Query: 216 KDMKNSSN-NRGFAFIEYHNHKCAEYSRQKMTN 247
++K +N NRGFAF+EY HK A +R+K+ +
Sbjct: 171 HELKKVTNKNRGFAFVEYETHKAAAMARRKLVS 203
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSED 197
S +N+G+AF+TF E A +A+ ++ E + GK + S A RLF+G+IP+N E+
Sbjct: 6 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 65
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
+ + S+V G+ V L + NRGF F+EY +HK A +R+++ + K+ N
Sbjct: 66 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 125
Query: 258 TVSWADP 264
TV WADP
Sbjct: 126 TVEWADP 132
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + N AS+A++
Sbjct: 38 TSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAME 97
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L S G + +
Sbjct: 98 MLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFG-NILSCK 156
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---SS 270
+ D ++ ++G+ F++Y N + A+ + K+ N L + R + ++
Sbjct: 157 IATD--SNGQSKGYGFVQYDNEESAQGAIDKL---NGMLMNDKQVYVGHFLRKQERESTT 211
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
G ++ + VYVKNL + T D+LKK+F G IT VV G+ K GF++F A
Sbjct: 212 GMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKC-FGFINFETAEDA 270
Query: 331 MKALKNTEKYELD 343
KA+++ + D
Sbjct: 271 AKAVESLNGKKFD 283
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 128/311 (41%), Gaps = 41/311 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ ++I + L D S G + +I DS+ ++KG+ FV + N E A AI
Sbjct: 126 ANIFIKNLDKSIDNKALHDTFSSFGNILSCKI--ATDSNGQSKGYGFVQYDNEESAQGAI 183
Query: 161 DKLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPG 208
DKLN K++ +T K++ +++ N+ + ++L+KV E G
Sbjct: 184 DKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFG-N 242
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+T +++D S + F FI + + A + + + F K
Sbjct: 243 ITSAVVMRDADGKS--KCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQ 300
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
S + ++ Q +YVKNL + ++LK+LF G IT V G +
Sbjct: 301 ELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISR 360
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKP 369
GFV F+ A +AL + + L +LA+ + +++ S V+ P
Sbjct: 361 GS-GFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRPVAMPP 419
Query: 370 SL---LQNYPP 377
SL + YPP
Sbjct: 420 SLAPRMPIYPP 430
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 11/259 (4%)
Query: 84 DEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-N 142
DE +K+ E EV++ G+P +A E D+ GEV EVR+++ + N
Sbjct: 92 DEGRRKRRKEY--------EVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLN 143
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDL-QKV 201
KGFAF F V A A + L KGK + L + NI +W EDL +K+
Sbjct: 144 KGFAFARFAEVWQARWAANDLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKL 203
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVS 260
+ + + L++ NRG+AF+++ +H A K+ + LGT+ +S
Sbjct: 204 KTFELENLEDINLIEHPDRKGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQIS 263
Query: 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
+++ + D +VK+V++ LP + +D +++ F G I + + ++ G
Sbjct: 264 FSNTISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFG 323
Query: 321 FVHFAERSSAMKALKNTEK 339
F+ F R +A+ + K
Sbjct: 324 FISFTTRQAALGCIDMVNK 342
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ G+P E D+R+ GE+ +++ + +++ K F F++F + A ID +
Sbjct: 281 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCIDMV 340
Query: 164 NNTEF 168
N F
Sbjct: 341 NKGRF 345
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 290 HEAASAAVEGLNEYELKGQKLYVGRAQ 316
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++ +
Sbjct: 222 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 279 SRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 319
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ ++ E+ + + + G +
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGE-I 265
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + +H+ A + + + ++L V A ++
Sbjct: 266 TSATLSRD-NETGKSRGFGFVNFSDHEAASAAVEGLNE--YELKGQKLYVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKV 374
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 21/259 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L + +G V+ +R+ + + + G+A+V F N E + +A++
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T +G+ R SQ + +FI N+ ++ L + G ++
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILS--- 196
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK-----MTNPNFKLGTNAPTVSWADPRNVD 268
K N + G+ F+ Y ++ AE + + + + +G + +S D +
Sbjct: 197 -CKVASNEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHH---ISKKDRQAKI 252
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ VYVKNL VTQ++ +KLFE +G+IT + + G+ + GFV+F+E
Sbjct: 253 EEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRG-FGFVNFSEHE 311
Query: 329 SAMKALKNTEKYELDGQAL 347
A KA++ E GQ L
Sbjct: 312 QAAKAVEELNDTEFHGQKL 330
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 111/277 (40%), Gaps = 34/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ ++ + S G+ FV + + + A AI +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHGS--LGYGFVHYESNDAAEAAIKHV 227
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + ++A Y +++ N+ E+ +K+ + G +
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYG-KI 286
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTV----- 259
T + D + S RGF F+ + H+ A + +++ + F LG
Sbjct: 287 TSAAIATDQEGKS--RGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEE 344
Query: 260 ---SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++ +N S V +Y+KNLP + ++L++ F G T V G +
Sbjct: 345 LRRAYEAAKNEKLSKYQGVN-LYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGASR 403
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV ++ A KA+ ++ + L +LA+
Sbjct: 404 G-FGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI +P D + L++ G T ++M+ + ++GF FV + E A+KA
Sbjct: 361 QGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMR-TPTGASRGFGFVCYSAPEEANKA 419
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N + + + + +Q K
Sbjct: 420 VAEMNGKMIENRPLYVALAQRK 441
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 122/263 (46%), Gaps = 30/263 (11%)
Query: 98 PPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
PP S +Y+G + + +E L + +G V +R+ + + + G+A+V F NV A
Sbjct: 19 PPLASASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDA 78
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEV 205
+A+D LN T+ KGK R K+R +FI N+ + + L S+
Sbjct: 79 ERALDTLNYTQIKGKACRI---MWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQF 135
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADP 264
G + ++ M +N+RGF F+++ AE + + ++ N L V P
Sbjct: 136 G-NILSCKV--SMDEHANSRGFGFVQFET---AEEANEAISKVNGMLLEDKRLFVGPFIP 189
Query: 265 R--NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
R ++G + VYVKN P NV+ D +K FE +G IT + + G K GFV
Sbjct: 190 RGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKC-FGFV 248
Query: 323 HFAERSSAMKALKNTEKYELDGQ 345
+F E A K + E++GQ
Sbjct: 249 NFKEADDAKKCCE-----EMNGQ 266
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 123/300 (41%), Gaps = 33/300 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D G + ++ + + ++GF FV F E A++AI K+
Sbjct: 114 IFIKNLDKTVDTRTLHDTFSQFGNILSCKV-SMDEHANSRGFGFVQFETAEEANEAISKV 172
Query: 164 NNTEFKGKKI----------RCSTSQAKY--RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N + K++ R ST+ + +++ N P N +D +K G +T
Sbjct: 173 NGMLLEDKRLFVGPFIPRGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERYGE-ITS 231
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA--------- 262
++++ K ++ F F+ + A+ ++M G A
Sbjct: 232 CKIMR--KEDGTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESERKEK 289
Query: 263 -----DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQE 315
D ++ +Q+ +Y+KNL + ++L++ FE G IT KV+ +P
Sbjct: 290 LKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRPEVS 349
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY 375
K GFV FA+ A +A+ + + + +L +P ++ + ++ +LL +
Sbjct: 350 KG-FGFVCFAQPEEATRAVTAMNGQMVGTKPIYVALHQPIEIRRQMQAAQGQRQNLLPRF 408
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 141/338 (41%), Gaps = 81/338 (23%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDF--------------CQSIGEVTEVRIMKG-KDS 139
L P HGSE+++GG+P AS+ D+ + C S + +++++K DS
Sbjct: 86 LGHPQHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPS--QPVDIQVVKDPNDS 143
Query: 140 SENKGFAFVTFRNVELASKA--------------IDKLNNTEFKGKKIRCSTSQAKYRLF 185
N+G+AF F N A ID NN E KKIR + K+ LF
Sbjct: 144 MRNRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNE--EKKIRATIKPTKHVLF 201
Query: 186 IGNIPRNWGSEDLQKVVSEV-GPGVTGVELVKDMKNSSN-----NRGFAFIEYHNHKCAE 239
+ P ED+ + V G G+ V L + +N ++G+ FI+Y N +CAE
Sbjct: 202 MSGFPPFATREDIVTELLRVGGAGIETVSLPRASGTGTNGIACRHKGYGFIDYFNQECAE 261
Query: 240 YSRQKM---TNPNFKLGTNAPTVS-WAD------PRNVDSSGASQVKAVYVKNLP-RNVT 288
+ + + T F N P V+ WAD P D +Q K+VYV +P V
Sbjct: 262 RAMKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDL--LAQSKSVYVGQIPTEGVA 319
Query: 289 QD------QLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS-------------- 328
D +L+++F G + V +P G FVHF ERS
Sbjct: 320 LDEKDLEGKLREVFGQFGEVESVKLP---RGDATKGYAFVHFTERSSAEKAVEAAAASAS 376
Query: 329 ------SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
SAM + +L G L +A+P+ ++ +
Sbjct: 377 GARGDESAMDGVVAAGAVQLQGCNLTVEIARPERERNN 414
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 229
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQ 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++
Sbjct: 221 HIAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETG 277
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 278 KSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 188 NIPRNWGSEDLQKVVSEVGPGVTGVELVK--DMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
NIP++ E++ E GV + D + NRGF F+++ +HK A +++K+
Sbjct: 7 NIPKSKSKEEILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKI 66
Query: 246 TNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK 304
+ + V WA+ + D S+VK +YV+NL VT++QLK++F HG + +
Sbjct: 67 HAGKLRPWNSDLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVER 126
Query: 305 VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
++ F+HF ER A+KA++ L+G A+E SLAKPQ D+K
Sbjct: 127 A--------KKIRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKK 173
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 14/248 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y G + +E L + +IG V +R+ + + + G+A+V F+ A++AID
Sbjct: 32 TSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAID 91
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR SQ L FI N+ + ++ L ++ G + +
Sbjct: 92 ALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFG-NIVSAK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D++ S +G+ F+++ + A+ + +K+ L V RN G +
Sbjct: 151 VATDLQGQS--KGYGFVQFDTEEGAQSAIEKVN--GMLLNDKQVYVGPFQKRNERGGGPT 206
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
VYVKNL +VT+++L+++FE G +T VVV G+ K GFV + + +A K+
Sbjct: 207 TFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKG-FGFVCYEDAEAAGKS 265
Query: 334 LKNTEKYE 341
++ + Y+
Sbjct: 266 VEELDGYD 273
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 36/283 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D G + ++ ++KG+ FV F E A AI+K+
Sbjct: 122 IFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDL-QGQSKGYGFVQFDTEEGAQSAIEKV 180
Query: 164 NNTEFKGKKIRCSTSQAKY----------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
N K++ Q + +++ N+ + E L++V + G +T V
Sbjct: 181 NGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFG-ALTSVV 239
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
++KD + S +GF F+ Y + + A S +++ + K+ A V A + S +
Sbjct: 240 VMKDAEGKS--KGFGFVCYEDAEAAGKSVEELDGYD-KIEDKAWVVCRAQKK---SEREA 293
Query: 274 QVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++KA +Y+KNL V +L++LF G IT V G +
Sbjct: 294 ELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGASR 353
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
FV F+ A +A+ + L +LA+ + D++
Sbjct: 354 GS-AFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRKEDRR 395
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + VY+ + +E LR+ + G +T V +MK + ++KGF FV + + E A
Sbjct: 205 PTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAE-GKSKGFGFVCYEDAEAAG 263
Query: 158 KAIDKLNN-------------------------TEFKGKKIRCSTSQAKYRLFIGNIPRN 192
K++++L+ +F ++ A L+I N+
Sbjct: 264 KSVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDT 323
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
L+++ +E G +T +++D +S RG AF+ + + A+ + + +T N K+
Sbjct: 324 VDDAKLRELFAEFGT-ITSCRVMRDTAGAS--RGSAFVAFSS---ADEATRAVTEMNGKM 377
Query: 253 GTNAP 257
P
Sbjct: 378 AGQKP 382
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 133/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L ++G V +RI + + + G+A+V F ++ A KA+D
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRNVDSS 270
K M + + +RG+AF+ + + A+ + + M K G P + D + +
Sbjct: 128 --KVMSDDAGSRGYAFVHFQSQTAADRAIEAMNGALLK-GCRLFVGPFKNRKDRQAELQN 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A++ VY+KN ++ ++LK++F H G+I V V G+ K GFV F +A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
+A++ +L GQ L A+ +A++++
Sbjct: 244 QRAVEIMNGKDLSGQPLFVGRAQKKAERQA 273
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENK 143
++ K + AEL + VYI D + L++ G++ V++M DS +K
Sbjct: 173 KNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVM--TDSRGRSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK------------------YR-- 183
GF FV+F + E A +A++ +N + G+ + +Q K YR
Sbjct: 231 GFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRF 290
Query: 184 ----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+I N+ + E L++ S G + VK MK ++GF I +
Sbjct: 291 RGVKLYIKNLDDSIDDERLRREFSSFGS----ISRVKVMKEEGRSKGFGLICF 339
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 229
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQ 316
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++ +
Sbjct: 222 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 279 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 128/301 (42%), Gaps = 50/301 (16%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ ++ E+ + + + G +
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGE-I 265
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + +H+ A + + + ++L V A ++
Sbjct: 266 TSATLSRD-NETGKSRGFGFVNFSDHEAASAAVEALNE--YELKGQKLYVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-------VVVP 308
++ + Q +Y+KNL ++ ++L++LF +G IT +V
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAIVDV 382
Query: 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEK 368
PA+ EK + + KA + +K E G++ S K ++++KS G + S K
Sbjct: 383 PAE--TEKGK--------EADKEKAKEAGDKSEEKGESKSESEDKSKSEEKSEGKTESAK 432
Query: 369 P 369
P
Sbjct: 433 P 433
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 27/286 (9%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D K +HA L Y+G +P D +E L +G V +RI + + + G+
Sbjct: 4 DAKYRHASL----------YVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGY 53
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSED 197
A+V F N+ A K +D +N +GK IR SQ A R +FI N+ R+ ++
Sbjct: 54 AYVNFLNLADAQKVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKM 113
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP---NFKLGT 254
L + S G ++ K M + +RG+AF+ + + A+ + ++M N +L
Sbjct: 114 LYEHFSAFGKILSS----KVMSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFV 169
Query: 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
P + + + A++ VY+KN ++ ++LK++F +G+I V V G+
Sbjct: 170 -GPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGK 228
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F +A +A++ ++ GQ + A+ +A++++
Sbjct: 229 SKG-FGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQA 273
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 122/277 (44%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F++ A +AI+++
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMS--DDKGSRGYAFVHFQSQSAADRAIEEM 157
Query: 164 NNTE----------FKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + Q K F +N+G E L++V S+ G V
Sbjct: 158 NGALLKNCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIV 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + H+ A+ + + M + K A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + G + +Y+KNL + ++QL++ F G +++V V + G+ K
Sbjct: 274 ELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVME-EEGRSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L +A+ +LA+
Sbjct: 333 G-FGLICFSCPEEATKAMAEMNGQVLGSKAINIALAQ 368
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K++ AEL + VYI D + L++ G++ V++M S ++KG
Sbjct: 173 KNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMT-DSSGKSKG 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F E A +A++ +N + G+ + +Q K
Sbjct: 232 FGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCR 291
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L++ S G + VK M+ ++GF I + C E
Sbjct: 292 GVKLYIKNLDETIDEEQLRRAFSSFGS----MSRVKVMEEEGRSKGFGLICFS---CPEE 344
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + M N + LG+ A ++ A
Sbjct: 345 ATKAMAEMNGQVLGSKAINIALA 367
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 229
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQ 316
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++ +
Sbjct: 222 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 279 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 185
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 186 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 242
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 243 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 301
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 276 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 332 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 390
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 391 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 185
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 186 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 242
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 243 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 301
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 276 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 332 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 390
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 391 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + VYI D + L+D G+ V++M S ++KG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKG 289
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PED 402
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALA 425
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 71 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 130
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 131 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 189
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 190 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 245
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 246 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 305
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 306 HEAASAAVEALNEYELKGQKLYVGRAQ 332
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++ +
Sbjct: 238 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 294
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 295 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 335
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEYGNSKGYGFVHYETAEAATNAIKHV 222
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ ++ E+ + + + G +
Sbjct: 223 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGE-I 281
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + +H+ A + + + ++L V A ++
Sbjct: 282 TSATLSRD-NETGKSRGFGFVNFSDHEAASAAVEALNE--YELKGQKLYVGRAQKKHERE 338
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 339 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKV 390
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 184
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 185 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 241
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 242 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 300
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 301 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 330
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 214
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 274
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 275 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 330
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 331 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 389
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 390 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + +YI D + L+D G+ V++M S ++KG
Sbjct: 230 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKG 288
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 289 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 348
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 349 GVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PED 401
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 402 ATKAMTEMNGRILGSKPLSIALA 424
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 229
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ ++VT ++ + LFE +G IT + + GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ +YEL GQ L A+
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQ 316
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + GE+T + + ++ +
Sbjct: 222 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 279 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 120/294 (40%), Gaps = 35/294 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ ++ E+ + + + G +
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGE-I 265
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + +H+ A + + + ++L V A ++
Sbjct: 266 TSATLSRD-NETGKSRGFGFVNFSDHEAASAAVEALNE--YELKGQKLYVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ + Q +Y+KNL ++ ++L++LF +G IT V +
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKV--MREAIV 380
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKP 369
E + +K E G+A S K ++++K+ G + S KP
Sbjct: 381 DAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKSKSEEKTEGKTESAKP 434
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 18/265 (6%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+ +Y+G + SE L D IG V+ +R+ + ++ + G+A+V F + E KAI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
++LN T KGK R SQ L +I N+ ++ L + S G +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
++ D S RGF F+ + N A + + + + V+ + S
Sbjct: 156 KVATDENGVS--RGFGFVHFENESDARDAIEAVD--GMLMNDQEVYVALHVSKKDRQSKL 211
Query: 273 SQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+VKA VYVKN+ + +Q++ ++LF +G+IT V+ G+ + GFV+F + +
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG-FGFVNFEDHA 270
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A KA+ + E GQ L A+
Sbjct: 271 AAAKAVDELNELEFKGQKLYVGRAQ 295
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD-MKNSSNNRGFAFIEYHNHKCAEYSR 242
L++G + L + S +G V+ + + +D + N+S G+A++ +H+H+ +
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIG-SVSSIRVCRDAITNTS--LGYAYVNFHDHEAGPKAI 96
Query: 243 QKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH 299
+++ N+ L P + W+ DP ++ G+ + Y+KNL + L + F
Sbjct: 97 EQL---NYTLIKGKPCRIMWSQRDP-SLRKKGSGNI---YIKNLHPAIDNKSLHETFSTF 149
Query: 300 GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
G I V + G + GFVHF S A A++ + ++ Q + +L + D++
Sbjct: 150 GNILSCKVATDENGVSRG-FGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQ 208
Query: 360 S 360
S
Sbjct: 209 S 209
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 185
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 186 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 242
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 243 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 301
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 276 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 332 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 390
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 391 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + +YI D + L+D G+ V++M S ++KG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKG 289
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PED 402
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALA 425
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 20/265 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L D IG V+ +R+ + + + G+A+V F + E AI+
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
KLN T KG+ R SQ +FI N+ + ++ L + S G + +
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK 161
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVD 268
+ D + ++GF F+ + N + A R+ + N L AP VS D ++
Sbjct: 162 IAND--ETGKSKGFGFVHFENEEAA---REAIDAINGMLLNGQEVYVAPHVSKKDRQSKL 216
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ VYVKNL T++ + LF+ +G IT V + G+ + GFV F
Sbjct: 217 DEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRG-FGFVDFENHE 275
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
A+KA++ E GQ L A+
Sbjct: 276 DAVKAVEALNDTEYKGQTLYVGRAQ 300
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + +A+E D + + G +T V + K + +++GF FV F N E A KA++
Sbjct: 224 TNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFGFVDFENHEDAVKAVE 282
Query: 162 KLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWGSED 197
LN+TE+KG+ + +Q KY LFI N+ + E
Sbjct: 283 ALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEK 342
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L++ + G +T +++ S +GF F+ + E + + +T N ++ P
Sbjct: 343 LKEEFAPFG-TITSARVMRTENGKS--KGFGFVCF---STPEEATRAITEKNQQIVAGKP 396
Query: 258 T-VSWADPRNVDSSG-ASQVKA 277
V+ A ++V S A Q++A
Sbjct: 397 LYVAIAQRKDVRRSQLAQQIQA 418
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G + + L + S +G V+ + + +D ++ G+A++ +++H+ + + +
Sbjct: 45 LYVGELDPSVSEALLYDIFSPIG-SVSSIRVCRDAITKTS-LGYAYVNFNDHEAGKTAIE 102
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
K+ N+ P + W+ DP ++ G+ + ++KNL ++ L + F G
Sbjct: 103 KL---NYTAIKGRPCRIMWSQRDP-SMRKKGSGNI---FIKNLHPDIDNKTLYETFSVFG 155
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I + + G+ K GFVHF +A +A+ L+GQ + + + D++S
Sbjct: 156 NILSCKIANDETGKSKG-FGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQS 214
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + + L++ G +T R+M+ ++ ++KGF FV F E A++A
Sbjct: 325 QGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMR-TENGKSKGFGFVCFSTPEEATRA 383
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 384 ITEKNQQIVAGKPLYVAIAQRK 405
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 333 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ K + AEL + + VYI D + L+D G+ V++M DSS ++K
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM--TDSSGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ I +Q K
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PE 343
Query: 240 YSRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 344 DATKAMTEMNGRILGSKPLSIALA 367
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 18/253 (7%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + HD ++ L D + +V VRI + + ++ G+ +V F N A+KAID L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 164 NNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S +FI N+ + + L S G + ++
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFG-NILSCKIA 144
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA--- 272
D S ++G F+++ + + A+ + K+ N L + R D A
Sbjct: 145 TDA--SGQSKGHGFVQFESEESAQNAIDKL---NGMLINDKQVYVGPFQRKQDRESALSG 199
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
++ VYVKNL T+ LK +F +G IT VV G+ K GFV+FA A K
Sbjct: 200 TKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKG-FGFVNFANVEDAAK 258
Query: 333 ALKNTEKYELDGQ 345
A++ DG+
Sbjct: 259 AVEALNGKNFDGK 271
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 29/283 (10%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L D + G + +I S ++KG FV F + E A AID
Sbjct: 112 ANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDA-SGQSKGHGFVQFESEESAQNAID 170
Query: 162 KLNNTEFKGKKIRCSTSQAKY------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ Q K +++ N+ DL+ + E G +
Sbjct: 171 KLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYG-AI 229
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--------KLGTNAPTVSW 261
T +++D+ S +GF F+ + N + A + + + NF K +
Sbjct: 230 TSAVVMRDVDGKS--KGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELE 287
Query: 262 ADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
RN S+ + K +Y+KNL +V ++L++LF G IT V G +
Sbjct: 288 LKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRG 347
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A AL + G+ L +LA+ + D+++
Sbjct: 348 S-GFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRA 389
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
HG+ +YI + + +LR+ G +T ++M+ S ++G FV F E AS A
Sbjct: 304 HGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMR-DPSGISRGSGFVAFSIAEGASWA 362
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q K
Sbjct: 363 LGEMNGKMVAGKPLYVALAQRK 384
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 21/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L + SIG V +R+ + + + G+A+V F++ A+ AID
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR SQ A R +FI N+ + ++ L ++ G +T +
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP--RNVDSS- 270
+ M ++ N++G+ F+++ AE ++ + N N + N V + P R D S
Sbjct: 151 VA--MDSAGNSKGYGFVQFET---AEAAQAAIDNVN-GMELNDKQV-YVGPFQRRADRST 203
Query: 271 -GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
G ++ VYVKNL N++ ++L++ F HG +T V+ + G+ K GFV F
Sbjct: 204 QGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKG-FGFVCFESPEG 262
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A A++N + Y D + A+ +A++++
Sbjct: 263 AASAVENLDGYTEDEKTWVVCRAQKKAEREA 293
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S +GP V + + +D+ + + G+A++ + + A ++
Sbjct: 34 LYVGDLETSVTEAQLYEKFSSIGP-VVSIRVCRDLI-TRRSLGYAYVNFQSSSDAAHAID 91
Query: 244 KMTNPNFKLGTNAPT---VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ NF++ P S DP V SG V +++KNL + + L F G
Sbjct: 92 VL---NFQVINGKPIRVLYSQRDP-AVRRSG---VGNIFIKNLDKAIDNKALLDTFAQFG 144
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
IT V G K GFV F +A A+ N EL+ + + + +AD+ +
Sbjct: 145 TITSAKVAMDSAGNSKG-YGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRST 203
Query: 361 AG 362
G
Sbjct: 204 QG 205
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
A + +++ + E E+++ E +A G+ +YI + + LR+ G +T R+
Sbjct: 289 AEREAELKAKFEAERRERMEKMA----GANLYIKNLEEGTDDEKLRELFNEFGTITSCRV 344
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
M+ S ++G AFV F + + A++A+ ++N K + + +Q K
Sbjct: 345 MRDA-SGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 391
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F ++ A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M N G + ++ ++ S
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEM-NGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + + A+ + ++++
Sbjct: 244 KKAVEEMNGRDINGQLIFVARAQKKVERQA 273
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + ++K F +N+G E L+ V S+ G +
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + QV +YVKNL + ++L+ F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A+KA+ L + L +LA+
Sbjct: 333 G-FGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 368
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGF 145
K + AEL + + VYI D + L+D G+ V++M DSS ++KGF
Sbjct: 175 RKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM--TDSSGKSKGF 232
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK------------------------ 181
FV+F + E A KA++++N + G+ I + +Q K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQV 292
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+L++ N+ E L+ S G + VK M+ ++GF I + + E +
Sbjct: 293 VKLYVKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PEDA 345
Query: 242 RQKMTNPNFK-LGTNAPTVSWA 262
+ MT N + LG+ +++ A
Sbjct: 346 LKAMTEMNGRILGSKPLSIALA 367
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 333 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ K + AEL + + VYI D + L+D G+ V++M DSS ++K
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM--TDSSGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ I +Q K
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PE 343
Query: 240 YSRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 344 DATKAMTEMNGRILGSKPLSIALA 367
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 16/241 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + H+ E L D + V R+ + + + G+A+V F N + A+KA++ L
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVL 94
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S +FI N+ ++ L + + GP V ++
Sbjct: 95 NFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGP-VLSCKVA 153
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN--PNFKLGTNAPTVSWADPRNVDSSGAS 273
D N+ ++G+ FI++ N + A+ + ++ N + P V + ++++G+
Sbjct: 154 VD--NNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLE--RIEANGSP 209
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VYVKNL + + LKK+F +G IT +V + G+ + GFV+F SA A
Sbjct: 210 KFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRG-FGFVNFQSPDSAAAA 268
Query: 334 L 334
+
Sbjct: 269 V 269
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 39/281 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L + S G V ++ ++ ++KG+ F+ F N E A AI+
Sbjct: 121 ANVFIKNLDTKIDNKALYETFASFGPVLSCKVAV-DNNGQSKGYGFIQFENEEDAQSAIN 179
Query: 162 KLNNTEFKGK------------KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN + +I + S +++ N+ EDL+K+ S G +
Sbjct: 180 RLNGMLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYG-AI 238
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T ++KD S RGF F+ + + A + +K+ F + V +
Sbjct: 239 TSAIVMKDQNGKS--RGFGFVNFQSPDSAAAAVEKLNGMTF-----SDKVWYVGRAQRKG 291
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+++KA +Y+KNL + +++LK+LF G IT V +
Sbjct: 292 EREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQ 351
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G K GFV F+ A +AL + + L ++A+
Sbjct: 352 GLSKGS-GFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQ 391
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + S+ DL+ S G +T +MK ++ +++GF FV F++ + A+
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNG-KSRGFGFVNFQSPDSAAA 267
Query: 159 AIDKLNNTEFKGKKIRCSTSQ----------AKY--------------RLFIGNIPRNWG 194
A++KLN F K +Q AK+ L++ N+
Sbjct: 268 AVEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTID 327
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
E L+++ SE G +T +++ D + S GF
Sbjct: 328 EERLKELFSEFG-SITSCKVMLDQQGLSKGSGFV 360
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 185
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 186 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 242
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 243 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 301
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 276 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 332 ELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 390
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 391 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + +YI D + L+D G+ V++M S ++KG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKG 289
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQ 349
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PED 402
Query: 241 SRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALA 425
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 20/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + ++ L D +G+V VR+ + + + G+ +V + N + A++AID
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K IR S S+ +FI N+ ++ + L + S G + +
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGT-IISCK 158
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--- 270
+ D S ++G+ F++Y + + A+ + K+ N L + R D
Sbjct: 159 IATDA--SGQSKGYGFVQYDSEEAAQTAIDKL---NGMLMNDKQVYVGVFLRKQDRDSEM 213
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
++ +YVKNL + ++D L+K F +G IT VVV G+ K GFV+F A
Sbjct: 214 SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKC-FGFVNFENPEDA 272
Query: 331 MKALK--NTEKYE 341
KA+ N +K++
Sbjct: 273 AKAVDALNGKKFD 285
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 132/334 (39%), Gaps = 46/334 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L + S G + +I S ++KG+ FV + + E A AIDKL
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDA-SGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 164 NNTEFKGKKIRCST-----------SQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N K++ S+ K+ +++ N+ + +DL+K E G +T
Sbjct: 189 NGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT-ITS 247
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAPTV 259
V +++D S + F F+ + N + A + + F K
Sbjct: 248 VVVMRDADGKS--KCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELK 305
Query: 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
S + + Q +YVKNL + ++LK+LF +G IT V G +
Sbjct: 306 SRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGS- 364
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPSLL 372
GFV F+ A +AL + + L +LA+ + +++ S V+ PS+
Sbjct: 365 GFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMG 424
Query: 373 QNYP------PHIG----YGLAGGTYGALGAGFG 396
P P +G YG A A AGFG
Sbjct: 425 PRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFG 458
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 18/273 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V F N+
Sbjct: 35 PSPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGE 94
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
+A++ LN T KGK R SQ L FI N+ + ++ L S G +
Sbjct: 95 RALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFG-NI 153
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D S N++G+ F+ Y + A+ + + + L V PR
Sbjct: 154 LSCKIALD--ESGNSKGYGFVHYETEEAADNAIKHVD--GMLLNDKKVYVGRHIPRKERQ 209
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ Q++A VYVKNL ++ +Q K++F G IT +V + G+ K GF++F
Sbjct: 210 AKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKG-FGFINFE 268
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA+ + E +G+ L + A+ + ++
Sbjct: 269 NYEDAHKAVDTLNETEHNGKTLYVARAQKKTER 301
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 116/287 (40%), Gaps = 39/287 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + +I +S +KG+ FV + E A AI +
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIAL-DESGNSKGYGFVHYETEEAADNAIKHV 187
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+ KK+ + +AK+ +++ N+ + E +++ S+ GP +
Sbjct: 188 DGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGP-I 246
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + D + S +GF FI + N++ A + + N T+ A +
Sbjct: 247 TSALVQTDEEGKS--KGFGFINFENYEDAHKAVDTLNETEH----NGKTLYVARAQKKTE 300
Query: 267 -------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
++ Q +Y+KNL ++ ++L++ F +G IT V + G
Sbjct: 301 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKG 360
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F+ A KA+ + + + +LA+ + ++S
Sbjct: 361 TSKG-FGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVRRS 406
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI + D + LR G +T ++M + +KGF FV F + + A+KA
Sbjct: 321 QGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVM-CDEKGTSKGFGFVCFSSPDEATKA 379
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K I + +Q K
Sbjct: 380 VTEMNGRMIGSKPIYVALAQRK 401
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 185
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 186 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 242
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN + ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 243 KASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 301
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N KG K+ R + ++K F +N+G E L+ V S+ G +
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTL 275
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 276 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 332 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 390
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 391 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 16/252 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + HD ++ L D + +V VRI + + ++ G+ +V F N A+KAID L
Sbjct: 26 LYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVL 85
Query: 164 NNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S +FI N+ + + L S G + ++
Sbjct: 86 NFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFG-NILSCKVA 144
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSGAS 273
D S ++G F+++ + + A+ + K+ N K P + D R SG +
Sbjct: 145 TDA--SGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQD-RESALSG-T 200
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ V+VKNL ++T+ L+++F +G IT VV G+ K GFV+FA A KA
Sbjct: 201 KFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKG-FGFVNFANVDDAAKA 259
Query: 334 LKNTEKYELDGQ 345
++ DG+
Sbjct: 260 VEALNGKNFDGK 271
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 37/287 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L D + G + ++ S ++KG FV F + E A AID
Sbjct: 112 ANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDA-SGQSKGHGFVQFESEESAQNAID 170
Query: 162 KLNNTEFKGKKI-----------RCSTSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ + S K+ +F+ N+ + DL+++ E G +
Sbjct: 171 KLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYG-AI 229
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADP 264
T +++D+ S +GF F+ + N A + + + NF +G
Sbjct: 230 TSAVVMRDVDGKS--KGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGK----AQKKSE 283
Query: 265 RNVDSSGAS-QVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
R ++ G Q+ +Y+KNL +V ++L +LF G IT V G
Sbjct: 284 RELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNG 343
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ GFV F+ A +AL + G+ L +LA+ + D+++
Sbjct: 344 ISRGS-GFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRA 389
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
HG+ +YI + + +L + G +T ++M+ + ++G FV+F E A++A
Sbjct: 304 HGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGI-SRGSGFVSFSIAEGATRA 362
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q K
Sbjct: 363 LGEMNGKMVAGKPLYVALAQRK 384
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 19/252 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + A+E L + +IG V +R+ + + + G+A+V F + A++AID
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR SQ +FI N+ ++ + L+ ++ G + +
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG-NIVSAK 161
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D N++G+ FI++ A+ + +K+ +L V R + +
Sbjct: 162 VATD--GQGNSKGYGFIQFDTEAAAKEAIEKVN--GMELNDKVVYVGPFQRRAERGTTET 217
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ V+VKNL VT ++L+K+FE G +T V++ + G+ K GFV + A KA
Sbjct: 218 KFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKG-FGFVCYETPEDASKA 276
Query: 334 LKNTEKYELDGQ 345
++ ELDG+
Sbjct: 277 VE-----ELDGK 283
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
A + +++ + E E+++ E +A G+ +YI + A + LR+ + G +T R+
Sbjct: 300 AEREAELKAKFEAERRERMEKMA----GANLYIKNLEDGADDETLRELFKEFGTITSCRV 355
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
M+ S ++G AFV F + E A++A+ +LN K + + +Q K
Sbjct: 356 MRDA-SGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRK 402
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 28/302 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 103 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 162
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NT+ K S S + R +F+G++ + E L ++ S V
Sbjct: 163 TGHVMPNTDRAFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVK 222
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +++ D N+ +RG+ F+ + +H +E + + ++G P S D
Sbjct: 223 GAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSG 281
Query: 266 NVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
+ S G S + VYV L NV++D+L+K F +G + V +P K + GFV
Sbjct: 282 SSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGK------QCGFV 335
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
FA R+ A +AL+ + QA+ S + + ++S G S + + ++ P + GYG
Sbjct: 336 QFASRTDAEEALQGLNGSLIGKQAVRLSWGRSPSHKQSRGDSGNRRNNMYYGTPFYGGYG 395
Query: 383 LA 384
A
Sbjct: 396 YA 397
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 20/265 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + SIG+V +R+ + + + G+A+V + + E KA++
Sbjct: 47 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 106
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ + +FI N+ ++ L + G + +
Sbjct: 107 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCK 165
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 166 VAQD--EHGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIPKKERMSKFE 221
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
++KA +YVKN+ +VT D+ + LFE HG IT + A+ Q K+R GFV++ +
Sbjct: 222 EMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASI--ARDDQGKSRGFGFVNYIKHE 279
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A A++ E GQ L A+
Sbjct: 280 AASVAVETLNDTEFHGQKLYVGRAQ 304
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D ++ + RD + G++T I + D +++GF FV + E AS A++
Sbjct: 228 TNIYVKNIDLDVTDDEFRDLFEKHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASVAVE 286
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+TEF G+K+ +Q K+
Sbjct: 287 TLNDTEFHGQKLYVGRAQKKH 307
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETAEAANNAIKHV 195
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI + ++ + + + G +
Sbjct: 196 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHG-DI 254
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPRN 266
T + +D + +RGF F+ Y H+ A + + + + F KL V A ++
Sbjct: 255 TSASIARD--DQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKL-----YVGRAQKKH 307
Query: 267 --------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 308 EREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 362
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 127/254 (50%), Gaps = 18/254 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S +F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + + F+ Y + + A+ + +K+ +LG+ V R+ ++ +
Sbjct: 135 VATDEFGKS--KSYGFVHYEDEESAKEAIEKVN--GIQLGSKNVYVGHFIKRSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ LK+LF +G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIV---KTDNKNRKFCFINYADSESAKNA 247
Query: 334 LKNT--EKYELDGQ 345
++N +K DGQ
Sbjct: 248 MENLNGKKITDDGQ 261
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N++S Q +Y+KNL + LK+LFE +G IT V Q K GFV
Sbjct: 427 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKG-FGFV 485
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
FA++ A KA+ ++G+ L LA
Sbjct: 486 CFAQQEEANKAVTEMHLKIINGKPLYVGLA 515
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + + L++ + G +T ++M+ D ++KGF FV F E A+KA+
Sbjct: 439 GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFAQQEEANKAV 497
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 498 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 531
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 131/270 (48%), Gaps = 20/270 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E DL + IG+V+ +R+ + S ++ G+A+V F++ KA++
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ L FI N+ ++ L S G + +
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFG-KILSCK 165
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVD 268
+ D + N++GF F+ Y +E ++ + N N L + P ++ D ++
Sbjct: 166 IATD--ENGNSKGFGFVHYEE---SESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKM 220
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ VYVKN+ N +D+L++ F G I+ + + + G+ + GFV+F +
Sbjct: 221 RELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRG-FGFVNFEKHE 279
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQ 358
A+KA++ ++DGQ L A+ ++++
Sbjct: 280 DAVKAVEELNNKDIDGQKLYVGRAQKKSER 309
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 31/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ +I ++ + +KGF FV + E A AI+ +
Sbjct: 137 IFIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGN-SKGFGFVHYEESESAKAAIENV 195
Query: 164 NNT------EFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N + G + Q+K R +++ NI NW + L++ S G +
Sbjct: 196 NGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFG-TI 254
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-----FKLGTNAPTVSWADP 264
+ + L KD S +RGF F+ + H+ A + +++ N + +G +
Sbjct: 255 SSIFLSKD--ESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMES 312
Query: 265 RNVDSSGASQVKA-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
A Q + ++VKNL ++ +L++ F+ +G IT V G+ K
Sbjct: 313 LKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKG 372
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV ++ A KA+ + + G+ L +LA+
Sbjct: 373 -FGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQ 407
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 22/256 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L + + +V +R+ + + ++ G+A+V F + + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 162 KLNNTEFKGKKIRC-------STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S ++ Y +FI N+ + ++ L+ + G V +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS--SG 271
+ D S +G+ F+++ + + AE S +K+ N L + R+ + +
Sbjct: 154 VAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERIRAN 208
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
SQ VYVKNLP T D LK LF HG IT +V G+ K GFV+F SA
Sbjct: 209 GSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC-FGFVNFQNTDSAA 267
Query: 332 KALKNTEKYELDGQAL 347
A++ +LDG L
Sbjct: 268 AAVE-----KLDGTVL 278
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ V+I + LRD + G V ++ DS+ ++KG+ FV F + E A +I
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKV--AVDSNGQSKGYGFVQFESEESAEISI 180
Query: 161 DKLNNTEFKGK------------KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
+KLN K +IR + SQ +++ N+P +DL+ + + G
Sbjct: 181 EKLNGMLLNDKQVYVGHFIRHQERIRANGSQFT-NVYVKNLPETTTDDDLKNLFAPHGT- 238
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+T ++ D S + F F+ + N A + +K+ LG + R +
Sbjct: 239 ITSAIVMTDSNGKS--KCFGFVNFQNTDSAAAAVEKLDGT--VLGDDKTLYVGRAQRKAE 294
Query: 269 SSGASQVKA---------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
+ K +Y+KNL ++ ++LK+LF +G IT V + G
Sbjct: 295 REAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHG 354
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS----------AGG 363
K GFV F+ A KAL + L ++A+ + ++K+ A G
Sbjct: 355 LSKGS-GFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAG 413
Query: 364 SVSEKPSLLQNYPP 377
+S PS + + P
Sbjct: 414 GISSLPSGIPGFHP 427
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 15/256 (5%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P + +Y+G + + ++ L D +G+V VR+ + + + G+ +V + + + A
Sbjct: 32 VPYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDA 91
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
++A+D LN T F K IR S +FI N+ + + L S G
Sbjct: 92 ARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFG-N 150
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS-WADPRNV 267
+ ++ D +S +RG+ F+++ N + A+ + K+ L V +
Sbjct: 151 ILSCKVATD--SSGQSRGYGFVQFDNEEAAQNAIDKLN--GMLLNDKQVYVGHFLRKHER 206
Query: 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
DS+ + VYVKNL + T++ LK +F +G IT V+ G+ K GFV+F
Sbjct: 207 DSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKC-FGFVNFENT 265
Query: 328 SSAMKALKNTEKYELD 343
+A KA+++ ++D
Sbjct: 266 DAAAKAVESLNGKKID 281
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 30/274 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D S G + ++ DSS +++G+ FV F N E A AIDK
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKV--ATDSSGQSRGYGFVQFDNEEAAQNAIDK 184
Query: 163 LNNTEFKGKKI----------RCSTSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
LN K++ R S S K+ +++ N+ + EDL+ + E G +T
Sbjct: 185 LNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGE-ITS 243
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTV------- 259
+++D S + F F+ + N A + +K+ + + +G
Sbjct: 244 AVIMRDADGKS--KCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELK 301
Query: 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
S + ++ Q +Y+KNL +++ + LK+LF G IT V G +
Sbjct: 302 SQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGS- 360
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A +AL + + L +LA+
Sbjct: 361 GFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQ 394
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YIG + +E L + SIG V +R+ + + + G+A+V F N+E KA+D
Sbjct: 69 ASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 128
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 129 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 188
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
V ++ NS +G+ F+ + + A + + + L V R S
Sbjct: 189 AVDELGNS---KGYGFVHFDSVDSANAAIEHVN--GMLLNDKKVYVGHHISRRDRQSKFE 243
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+KA VYVKNL + T+++ KLFE +G+IT + + G+ + FV+FA S
Sbjct: 244 ALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRG-FAFVNFATHDS 302
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A +A+ +E G+ L A+
Sbjct: 303 AQQAVDELNDFEYKGKKLYVGRAQ 326
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 35/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G++ ++ + +KG+ FV F +V+ A+ AI+ +
Sbjct: 159 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAV-DELGNSKGYGFVHFDSVDSANAAIEHV 217
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ N+ + E+ K+ + G +
Sbjct: 218 NGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGK-I 276
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + L KD N+ RGFAF+ + H A+ + ++ + F+ V A ++
Sbjct: 277 TSLSLAKD--NAGKFRGFAFVNFATHDSAQQAVDELND--FEYKGKKLYVGRAQKKHERQ 332
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q ++VKNL + ++LK F G IT V + +
Sbjct: 333 EELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKS 392
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV ++ A KA+ + L G+ L +LA+ + ++S
Sbjct: 393 KG-FGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRS 436
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E ++E +K E + L G +++ + + + L+ + G +T ++M +
Sbjct: 330 ERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMT-DE 388
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++++KGF FV + N E A+KAI ++N GK + + +Q K
Sbjct: 389 NNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRK 431
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 22/256 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L + + +V +R+ + + ++ G+A+V F + + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 162 KLNNTEFKGKKIRC-------STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S ++ Y +FI N+ + ++ L+ + G V +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS--SG 271
+ D S +G+ F+++ + + AE S +K+ N L + R+ + +
Sbjct: 154 VAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERIRAN 208
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
SQ VYVKNLP T D LK LF HG IT +V G+ K GFV+F SA
Sbjct: 209 GSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC-FGFVNFQNTDSAA 267
Query: 332 KALKNTEKYELDGQAL 347
A++ +LDG L
Sbjct: 268 AAVE-----KLDGTVL 278
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ V+I + LRD + G V ++ DS+ ++KG+ FV F + E A +I
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKV--AVDSNGQSKGYGFVQFESEESAEISI 180
Query: 161 DKLNNTEFKGK------------KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
+KLN K +IR + SQ +++ N+P +DL+ + + G
Sbjct: 181 EKLNGMLLNDKQVYVGHFIRHQERIRANGSQFT-NVYVKNLPETTTDDDLKNLFAPHGT- 238
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+T ++ D S + F F+ + N A + +K+ LG + R +
Sbjct: 239 ITSAIVMTDSNGKS--KCFGFVNFQNTDSAAAAVEKLDGT--VLGDDKTLYVGRAQRKAE 294
Query: 269 SSGASQVKA---------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
+ K +Y+KNL ++ ++LK+LF +G IT V + G
Sbjct: 295 REAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHG 354
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS----------AGG 363
K GFV F+ A KAL + L ++A+ + ++K+ A G
Sbjct: 355 LSKGS-GFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAG 413
Query: 364 SVSEKPSLLQNYPP 377
+S PS + + P
Sbjct: 414 GISSLPSGIPGFHP 427
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 9/187 (4%)
Query: 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
G+ + S RLF+G IP+ E++ + +V GV V + + + NRGFAF
Sbjct: 296 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAF 355
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVT 288
+EY +H+ A +R+++ +L + V WA+P VD S VK +YV+NL + +
Sbjct: 356 VEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTS 415
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTEKYELDGQAL 347
++ ++K F + P A +K R FVHF+ R A++A+K LDG +
Sbjct: 416 EEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 468
Query: 348 ECSLAKP 354
E +LAKP
Sbjct: 469 EVTLAKP 475
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK 169
AI +LNN E +
Sbjct: 111 NAIKQLNNYEIR 122
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 25/263 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV---ELA 156
H S +Y+G + D +E L + IG V +R+ + + + G+A+V + +V A
Sbjct: 36 HNSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAA 95
Query: 157 SKAIDKLNNTEFKGKKIRC--STSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPG 208
+A+D+LN T G+ +R S +R +FI N+ R+ ++ L S G
Sbjct: 96 ERALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFG-N 154
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ ++ +D+K S +G+ F+ + + A + +K+ N L R +
Sbjct: 155 ILSCKVAQDLKGES--KGYGFVHFEKDESARLAIEKV---NGMLLEGKKVYVGPFLRRSE 209
Query: 269 SSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
S S+VK V+VKNL V+ D++K +F HG + ++ G+ K GF++F E
Sbjct: 210 RSSDSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKG-FGFINFEE 268
Query: 327 RSSAMKALKNTEKYELDGQALEC 349
A A++ L+G+ + C
Sbjct: 269 PEQAASAVQ-----ALNGKDVNC 286
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 34/276 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRI---MKGKDSSENKGFAFVTFRNVELASKAI 160
++I + L D + G + ++ +KG E+KG+ FV F E A AI
Sbjct: 131 IFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKG----ESKGYGFVHFEKDESARLAI 186
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+K+N +GKK+ R S S+ K+ +F+ N+ ++++ + +E G V
Sbjct: 187 EKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGT-V 245
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAP 257
+++D + ++GF FI + + A + Q + + K A
Sbjct: 246 NSCIIMRD--DEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAM 303
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ + + Q +YVKNL ++ + L+ F G IT V G+ +
Sbjct: 304 LRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRG 363
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV +A A +A+ + G+ + +LA+
Sbjct: 364 -FGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQ 398
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + D + LR G +T ++M + +++GF FV + + E A++A
Sbjct: 320 QGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMV-DSAGKSRGFGFVCYASPEEATRA 378
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N KGK I + +Q +
Sbjct: 379 VTEMNGRMIKGKPIYVALAQRR 400
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 14/262 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E DL +F IG V +R+ + + + G+ +V F + +A++
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN E KG + R SQ L FI N+ ++ L S G V +
Sbjct: 112 ELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG-KVLSCK 170
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D + N++GF F+ Y + + A+ + + + N + P ++ D +
Sbjct: 171 VATD--ENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEM 228
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
V+VKN T+D+L++LFE +G IT + + G K GFV+FAE A+
Sbjct: 229 IKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKG-FGFVNFAEHDDAV 287
Query: 332 KALKNTEKYELDGQALECSLAK 353
KA++ E G+ L A+
Sbjct: 288 KAVEALNDKEYKGKPLYVGRAQ 309
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 16/265 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + L D +G V VR+ + ++ + G+A+V F + A++A++ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 164 NNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S +FI N+ ++ ++ L S G + ++
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG-NILSCKVA 162
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSGAS 273
+M S ++G+ F++Y + A+ + ++ N K P V + NV G+
Sbjct: 163 TEM--SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENV--FGSP 218
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VYVKNL + T+D LK+LF + G IT V+V A G+ + GFV+F A+ A
Sbjct: 219 KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRC-FGFVNFENPDDAVHA 277
Query: 334 LKNTEKYELDGQALECSLAKPQADQ 358
+++ + D + L A+ ++++
Sbjct: 278 VEDLNGKKFDDKELYVGRAQKKSER 302
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 16/265 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + L D +G V VR+ + ++ + G+A+V F + A++A++ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 164 NNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S +FI N+ ++ ++ L S G + ++
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG-NILSCKVA 162
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSGAS 273
+M S ++G+ F++Y + A+ + ++ N K P V + NV G+
Sbjct: 163 TEM--SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENV--FGSP 218
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VYVKNL + T+D LK+LF + G IT V+V A G+ + GFV+F A+ A
Sbjct: 219 KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRC-FGFVNFENPDDAVHA 277
Query: 334 LKNTEKYELDGQALECSLAKPQADQ 358
+++ + D + L A+ ++++
Sbjct: 278 VEDLNGKKFDDKELYVGRAQKKSER 302
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 97 LPPHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+PP S +Y+G + D +E L + ++G V +R+ + + ++ G+A+V + N+
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVG 206
A +A+D LN T KG+ R S L F+ N+ + ++ L S G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
+ ++ D S N G F+ Y + + A+ + +K+ +LG+ V ++
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVN--GMQLGSKNVYVGHFIKKS 183
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++ ++ +YVKN P VT+ LK+LF +G IT ++V K + + F+++++
Sbjct: 184 ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV---KSDNKNRKFCFINYSD 240
Query: 327 RSSAMKALKN 336
SA A++N
Sbjct: 241 ADSARNAMEN 250
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L ++ + VG V + + +D + + G+A++ YHN AE +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVG-HVLSIRVCRDSV-TRKSLGYAYVNYHNLADAERALD 75
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
+ N K S DP ++ SG + +VKNL + + L F G I
Sbjct: 76 TLNYTNIKGQPARLMWSHRDP-SLRKSGTGNI---FVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
V + G+ KN GFVH+ + SA +A++ +L
Sbjct: 132 SCKVATDEFGKSKN-YGFVHYEDEESAKEAIEKVNGMQL 169
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + ++ L++ + G +T ++MK D ++KGF FV F E A+KA+
Sbjct: 406 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMK-DDKDQSKGFGFVCFGTHEEANKAV 464
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 465 TEMHLKIINGKPLYVGLAEKREHRLSRLQQRFRM 498
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N +S +Y+KNL ++ LK+LFE +G IT V Q K GFV
Sbjct: 394 DTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKG-FGFV 452
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
F A KA+ ++G+ L LA
Sbjct: 453 CFGTHEEANKAVTEMHLKIINGKPLYVGLA 482
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 128/243 (52%), Gaps = 26/243 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G I + + ++L++ + + VT + IMK K + FAFV F + A +A+ K
Sbjct: 23 IHVGDISLNTTANELKEVFKGLN-VTNI-IMK-KTLNGQYAFAFVKFDSANAAQEAVQKY 79
Query: 164 NNTEFKGKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
N T GK+I + S +++ +F+ NIP + ++DL+++ GP V ++ +
Sbjct: 80 NYTMLNGKEILLTISDTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGP-VLSCKISRT 138
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTN-PNFKLGTNAPTVSWADPRNVDSSGASQVK 276
+ S +G+ ++ Y N K A ++ +TN N K+ N V + +P+ S+ S+ K
Sbjct: 139 SEGKS--KGYGYVMYKNLKSA---KKAVTNCQNVKINENILFVDFYNPQ--KSARNSENK 191
Query: 277 AV---YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF--VHFAERSSAM 331
A + KN P N T+ +LK L + +G IT + P G+ +GF V++A SA+
Sbjct: 192 AFTNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKP---VGFACVNYAHPESAV 248
Query: 332 KAL 334
+A+
Sbjct: 249 RAI 251
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 128/299 (42%), Gaps = 38/299 (12%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +++ IP D S DL + ++ G V +I + + ++KG+ +V ++N++ A KA
Sbjct: 102 QSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISRTSEG-KSKGYGYVMYKNLKSAKKA 160
Query: 160 IDKLNNTEFK-----------GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
+ N + K R S ++A F N P N+ +L+ ++ + G
Sbjct: 161 VTNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYGEI 220
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAE------YSRQKMTNPNFKLGTNAPTVSWA 262
T + K+ GFA + Y + + A +++Q N + T +
Sbjct: 221 TT---IYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFAIEPFY 277
Query: 263 DPRNVDSSGASQV----------------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306
+N Q+ + ++++N+P + ++D+L ++ + G IT
Sbjct: 278 IQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFK 337
Query: 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSV 365
+ EK + G+V ++ A AL+ +++ LDG LE S+ K + ++ + +
Sbjct: 338 LKLDTLHPEK-QFGYVCYSTIEEAAVALEKSKQVLLDGNQLELSIYKSKYERSTESSYI 395
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 186 IGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+G+I N + +L++V G VT + + K + + FAF+++ + A+ + QK
Sbjct: 25 VGDISLNTTANELKEVFK--GLNVTNIIMKKTL---NGQYAFAFVKFDSANAAQEAVQKY 79
Query: 246 TNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV 305
L ++ +D + SQ ++V N+P +++ L+++F++ G +
Sbjct: 80 NYT--MLNGKEILLTISDTQ----FKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSC 133
Query: 306 VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSV 365
+ G+ K G+V + SA KA+ N + +++ L P QKSA S
Sbjct: 134 KISRTSEGKSKGY-GYVMYKNLKSAKKAVTNCQNVKINENILFVDFYNP---QKSARNSE 189
Query: 366 SEKPS--LLQNYPPH 378
++ + +N+PP+
Sbjct: 190 NKAFTNCFCKNFPPN 204
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 97 LPPHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+PP S +Y+G + D +E L + ++G V +R+ + + ++ G+A+V + N+
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVG 206
A +A+D LN T KG+ R S L F+ N+ + ++ L S G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
+ ++ D S N G F+ Y + + A+ + +K+ +LG+ V ++
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVN--GMQLGSKNVYVGHFIKKS 183
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++ ++ +YVKN P VT+ LK+LF +G IT ++V K + + F+++++
Sbjct: 184 ERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV---KSDNKNRKFCFINYSD 240
Query: 327 RSSAMKALKN 336
SA A++N
Sbjct: 241 ADSARNAMEN 250
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L ++ + VG V + + +D + + G+A++ YHN AE +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVG-HVLSIRVCRDSV-TRKSLGYAYVNYHNLADAERALD 75
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
+ N K S DP ++ SG + +VKNL + + L F G I
Sbjct: 76 TLNYTNIKGQPARLMWSHRDP-SLRKSGTGNI---FVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
V + G+ KN GFVH+ + SA +A++ +L
Sbjct: 132 SCKVATDEFGKSKN-YGFVHYEDEESAKEAIEKVNGMQL 169
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + + L++ + G +T ++MK D ++KGF FV F E A+KA+
Sbjct: 399 GVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMK-DDKDQSKGFGFVCFGTHEEANKAV 457
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 458 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 491
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N +S +Y+KNL ++ LK+LFE +G IT V Q K GFV
Sbjct: 387 DTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKG-FGFV 445
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
F A KA+ ++G+ L LA
Sbjct: 446 CFGTHEEANKAVTEMHLKIINGKPLYVGLA 475
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 25/266 (9%)
Query: 88 KKKHAELLALPPHGSE------VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
+ + A +A P GS +Y+G + D SE +L + IG+V +R+ + + +
Sbjct: 6 QAQQAPTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKK 65
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNW 193
+ G+A+V + + AS+A++ LN T KGK IR S +FI N+ ++
Sbjct: 66 SLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSI 125
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253
++ L S G + +V D ++ N++G+ F+++ + A+ + +K+ +
Sbjct: 126 DNKALHDTFSAFGT-ILSCRVVMD--DAGNSKGYGFVQFEKEESAQIAIEKVNG----ML 178
Query: 254 TNAPTVSWA---DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
N VS A + D + + VYVKNL T + L+K+F G I+ VV
Sbjct: 179 INDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRD 238
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKN 336
G+ K GFV+F A A++N
Sbjct: 239 ADGKSKC-FGFVNFENVDDAANAVEN 263
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 40/288 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + R++ D+ +KG+ FV F E A AI+
Sbjct: 114 ANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVM-DDAGNSKGYGFVQFEKEESAQIAIE 172
Query: 162 KLNNTEFKGKKIRCS-----------TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
K+N +++ + +S+ +++ N+ EDL+KV + GP ++
Sbjct: 173 KVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGP-IS 231
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDS 269
+++D S + F F+ + N + + + N N KL W R S
Sbjct: 232 SAVVMRDADGKS--KCFGFVNFEN---VDDAANAVENLNGKLINEK---EWYVGRAQKKS 283
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+++KA +Y+KN+ ++ ++L++LF G +T V +
Sbjct: 284 EREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQ 343
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GQ GFV F+ AM+A+ + + + L +LA+ + ++++
Sbjct: 344 GQSMGS-GFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRA 390
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 26/196 (13%)
Query: 57 IEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEH 116
++ E EE + E + D Q+ +K +A + + VY+ + ++
Sbjct: 159 VQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDE 218
Query: 117 DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176
DLR G ++ +M+ D ++K F FV F NV+ A+ A++ LN K+
Sbjct: 219 DLRKVFAGFGPISSAVVMRDADG-KSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVG 277
Query: 177 TSQAK------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
+Q K L++ NI + E L+++ + G VT
Sbjct: 278 RAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGT-VTSC 336
Query: 213 ELVKDMKNSSNNRGFA 228
+++K + S GF
Sbjct: 337 KVMKSPQGQSMGSGFV 352
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 18/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 12 TSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 71
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K IR S +FI N+ + + L S G + +
Sbjct: 72 VLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFG-NILSCK 130
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S ++G+ F+++ + + A+ + K+ N L + R D GA
Sbjct: 131 VATDA--SGQSKGYGFVQFDSEEAAQNAIDKL---NGMLVNDKQVYVGHFLRKQDRDGAL 185
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ V+VKNL + T ++LK +F HG IT VV G+ K GFV+F A
Sbjct: 186 YSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKC-FGFVNFESADDA 244
Query: 331 MKALKNTEKYELDGQ 345
KA++ ++DG+
Sbjct: 245 AKAVEALNGKKIDGE 259
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GK 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GK 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 20/307 (6%)
Query: 60 EVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLR 119
+V+E +E+ D+ + + +E + A+ LP + +Y+G + +E L
Sbjct: 8 QVQESLEKLNLDSAPVAIQETNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLF 67
Query: 120 DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179
+ +G+V+ +R+ + + ++ G+A+V F +E KAID LN + G+ R SQ
Sbjct: 68 EIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQ 127
Query: 180 --------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE 231
+ +FI N+ ++ L S G + ++ D N++ F F+
Sbjct: 128 RDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATD--EQGNSKCFGFVH 184
Query: 232 YHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
Y + AE +R + N N L + VS D + + VYVKN+
Sbjct: 185 Y---ETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLG 241
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
++++++ LFE +G+IT + + G+ K GFV+F +A+KA++ +++GQ
Sbjct: 242 FSEEEMRNLFEPYGKITSLHLEKDAEGKSKG-FGFVNFESHEAAVKAVEELNDKDINGQN 300
Query: 347 LECSLAK 353
L A+
Sbjct: 301 LYVGRAQ 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 31/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
++I + L D + G++ ++ + +K F FV + E A AI+
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAT-DEQGNSKCFGFVHYETAEAARAAIENV 198
Query: 163 ----LNNTE-FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN+ E + GK + ++K+ +++ NI + E+++ + G +
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGK-I 257
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVSWAD- 263
T + L KD + S +GF F+ + +H+ A E + + + N +G +
Sbjct: 258 TSLHLEKDAEGKS--KGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEE 315
Query: 264 -PRNVDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
R +++ ++ ++VKNL ++ +L++ F+ G IT V + G+ K
Sbjct: 316 LKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKG 375
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + G+ L +LA+
Sbjct: 376 -FGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQ 410
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + + G +T R+M + ++KGF FV F + E A+KA
Sbjct: 332 QGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMV-DEHGKSKGFGFVCFSSPEEATKA 390
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N F GK + + +Q K
Sbjct: 391 ITEMNQRMFHGKPLYVALAQRK 412
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 39/297 (13%)
Query: 96 ALPPHGS-----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
A+PP S ++IG + + E+ L + GEV V++++ K +++++G+ F+ F
Sbjct: 63 AVPPPSSADEVETLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEF 122
Query: 151 RNVELASKAIDKLNNTEFK--GKKIRCSTS-----------QAKYRLFIGNIPRNWGSED 197
+ A + + N T G+ R + + Y +F+G++ +
Sbjct: 123 ISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHH 182
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK-------------CAEYSRQK 244
L +V V G ++V D + + +G+ F+ + + C+ +
Sbjct: 183 LTEVFRTRYNSVKGAKVVID-RTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRI 241
Query: 245 MTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
N LGT S+ +P+ + ++V NL NVT + LK++F +G +
Sbjct: 242 GPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELV 301
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
V +P K R GFV FA+RSSA +AL+ L GQ + S + A++++
Sbjct: 302 HVKIPSGK------RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQT 352
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 14/248 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y G + + +E L + +IG V +R+ + + + G+A+V F+ A++AID
Sbjct: 20 TSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAID 79
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR SQ L FI N+ + ++ L S+ G + +
Sbjct: 80 VLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFG-NIVSAK 138
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D + S +G+ F+++ + A+ + K+ L V R G +
Sbjct: 139 VAADGQGVS--KGYGFVQFAEQEAAQQAIDKVN--GMLLNDKQVYVGPFQRRGERGGGPT 194
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
VYVKNL +V +D+LK++F G++T VV+ G+ K GFV F E +A +A
Sbjct: 195 TFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKG-FGFVCFEESEAASEA 253
Query: 334 LKNTEKYE 341
++ + Y+
Sbjct: 254 VEKLDGYD 261
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 36/283 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D G + ++ +KG+ FV F E A +AIDK+
Sbjct: 110 IFIKNLDKEIDNKALYDTFSQFGNIVSAKV-AADGQGVSKGYGFVQFAEQEAAQQAIDKV 168
Query: 164 NNTEFKGKKIRCSTSQAK----------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
N K++ Q + +++ N+ + + L++V VG +T V
Sbjct: 169 NGMLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVGK-LTSVV 227
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
++KD + S +GF F+ + + A + +K+ + K+ A V A + + +
Sbjct: 228 IMKDGEGKS--KGFGFVCFEESEAASEAVEKLDGYD-KIEDKAWVVCRAQKK---AEREA 281
Query: 274 QVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++KA +Y+KNL V +L++LF G IT V G +
Sbjct: 282 ELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASR 341
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
FV F+ A +A+ + L +LA+ + D++
Sbjct: 342 GS-AFVAFSSADEATRAVTEMNGKMAGTKPLYVALAQRKEDRR 383
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + VY+ + E L++ ++G++T V IMK + ++KGF FV F E AS
Sbjct: 193 PTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGE-GKSKGFGFVCFEESEAAS 251
Query: 158 KAIDKLNN-------------------------TEFKGKKIRCSTSQAKYRLFIGNIPRN 192
+A++KL+ +F ++ A L+I N+
Sbjct: 252 EAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDT 311
Query: 193 WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL 252
L+++ +E G +T +++D +S RG AF+ + + A+ + + +T N K+
Sbjct: 312 VDDAKLRELFAEFGT-ITSCRVMRDASGAS--RGSAFVAFSS---ADEATRAVTEMNGKM 365
Query: 253 GTNAP 257
P
Sbjct: 366 AGTKP 370
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 19/249 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P S +Y+G + + SE L + +G V+ +R+ + ++ + +A+V + N A +
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D LNNT +GK R SQ L FI N+ + + L S G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++V D NSS +GF F+ Y + A+ + K+ + N V ++
Sbjct: 126 SCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNG----MMINGQKVFVGPFKSSKER 179
Query: 271 G-ASQVK--AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
G ++VK V+ KNL +V DQLK+L + +G IT + + G+ K GF +F
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFESA 238
Query: 328 SSAMKALKN 336
+A ++N
Sbjct: 239 EAAKNVVEN 247
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 127/298 (42%), Gaps = 35/298 (11%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GI H A L D + G + +++ D + +KGF FV + E A KAI K+N
Sbjct: 108 GIDHKA----LYDTFSAFGNILSCKVVT-DDGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 168 FKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
G+K+ R ++ K+ +F N+ + G + L++++ + G +T + ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG----- 271
D K S GFA N + AE ++ + N N K+ P + + ++
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 272 ---ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
Q +Y+KN+ ++ D+L+++F G IT +V GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSE----KPSLLQNYPPHIGYG 382
A +A+ + + L +LA+ + D + A + K + Q PP G G
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVALAQ-RKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG 393
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI I LR+ G +T +MK ++ +KGF FV + + A++A
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 342 VTEMNGRMIGTKPLYVALAQRK 363
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 97 LPPHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+PP S +Y+G + D +E L + ++G V +R+ + + ++ G+A+V + N+
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVG 206
A +A+D LN T KG+ R S L F+ N+ + ++ L S G
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFG 128
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
+ ++ D S N G F+ Y + + A+ + +K+ +LG+ V ++
Sbjct: 129 -NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVN--GMQLGSKNVYVGHFIKKS 183
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++ ++ +YVKN P VT+ LK+LF +G IT ++V K + + F+++++
Sbjct: 184 ERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV---KSDNKNRKFCFINYSD 240
Query: 327 RSSAMKALKN 336
SA A++N
Sbjct: 241 ADSARNAMEN 250
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L ++ + VG V + + +D + + G+A++ YHN AE +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVG-HVLSIRVCRDSV-TRKSLGYAYVNYHNLADAERALD 75
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
+ N K S DP ++ SG + +VKNL + + L F G I
Sbjct: 76 TLNYTNIKGQPARLMWSHRDP-SLRKSGTGNI---FVKNLDKTIDNKALFDTFSMFGNIL 131
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
V + G+ KN GFVH+ + SA +A++ +L
Sbjct: 132 SCKVATDEFGKSKN-YGFVHYEDEESAKEAIEKVNGMQL 169
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + ++ L++ + G +T ++MK D ++KGF FV F E A+KA+
Sbjct: 409 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMK-DDKDQSKGFGFVCFGTHEEANKAV 467
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 468 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 501
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N +S +Y+KNL ++ LK+LFE +G IT V Q K GFV
Sbjct: 397 DTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKG-FGFV 455
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
F A KA+ ++G+ L LA
Sbjct: 456 CFGTHEEANKAVTEMHLKIINGKPLYVGLA 485
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 39/297 (13%)
Query: 96 ALPPHGS-----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
A+PP S ++IG + + E+ L + GEV V++++ K +++++G+ F+ F
Sbjct: 63 AVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEF 122
Query: 151 RNVELASKAIDKLNNTEFK--GKKIRCSTS-----------QAKYRLFIGNIPRNWGSED 197
+ A + + N T G+ R + + Y +F+G++ +
Sbjct: 123 ISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHH 182
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK-------------CAEYSRQK 244
L +V V G ++V D + + +G+ F+ + + C+ +
Sbjct: 183 LTEVFRTRYNSVKGAKVVID-RTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRI 241
Query: 245 MTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
N LGT S+ +P+ + ++V NL NVT + LK++F +G +
Sbjct: 242 GPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELV 301
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
V +P K R GFV FA+RSSA +AL+ L GQ + S + A++++
Sbjct: 302 HVKIPSGK------RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQT 352
>gi|125548504|gb|EAY94326.1| hypothetical protein OsI_16094 [Oryza sativa Indica Group]
Length = 426
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 138/303 (45%), Gaps = 30/303 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
+++G + + E+ L GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 106 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 165
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN + + R S + Y +F+G++ + E L ++ + V
Sbjct: 166 TGHVMPNTDRPFKLNWASYSMGEKR-SEVASDYSIFVGDLAADVTDEMLMELFANKYRSV 224
Query: 210 TGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G +++ D N+ +RG+ F+ + +H E + + ++G P S D
Sbjct: 225 KGAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDS 283
Query: 265 RNVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+ S G S + VYV L NV++D+L+K F +G + V +P K + GF
Sbjct: 284 GSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGK------QCGF 337
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
V F R+ A +AL+ + QA+ S + + ++S S S + ++ P + GY
Sbjct: 338 VQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGY 397
Query: 382 GLA 384
G A
Sbjct: 398 GYA 400
>gi|116310076|emb|CAH67097.1| H0818E04.14 [Oryza sativa Indica Group]
Length = 426
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 138/303 (45%), Gaps = 30/303 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
+++G + + E+ L GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 106 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 165
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN + + R S + Y +F+G++ + E L ++ + V
Sbjct: 166 TGHVMPNTDRPFKLNWASYSMGEKR-SEVASDYSIFVGDLAADVTDEMLMELFANKYRSV 224
Query: 210 TGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G +++ D N+ +RG+ F+ + +H E + + ++G P S D
Sbjct: 225 KGAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDS 283
Query: 265 RNVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+ S G S + VYV L NV++D+L+K F +G + V +P K + GF
Sbjct: 284 GSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGK------QCGF 337
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
V F R+ A +AL+ + QA+ S + + ++S S S + ++ P + GY
Sbjct: 338 VQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGY 397
Query: 382 GLA 384
G A
Sbjct: 398 GYA 400
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +Y+G + + L D +G V VR+ + ++ + G+A+V F + A++A
Sbjct: 37 QATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARA 96
Query: 160 IDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
++ LN T GK IR S +FI N+ ++ ++ L S G +
Sbjct: 97 LEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG-NILS 155
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDS 269
++ +M S ++G+ F+++ + A+ + K+ N K P V + NV
Sbjct: 156 CKVATEM--SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENV-- 211
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
SG + VYVKNL + T+D LK++F G IT VVV + G K+R GFV+F
Sbjct: 212 SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV--MREGDGKSRCFGFVNFENPD 269
Query: 329 SAMKALKNTEKYELD 343
A +A+++ + D
Sbjct: 270 DAARAVEDLNGKKFD 284
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 133/297 (44%), Gaps = 39/297 (13%)
Query: 96 ALPPHGS-----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
A+PP S ++IG + + E+ L + GEV V++++ K +++++G+ F+ F
Sbjct: 61 AVPPPTSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEF 120
Query: 151 RNVELASKAIDKLNNTEFK--GKKIRCSTS-----------QAKYRLFIGNIPRNWGSED 197
+ A + + N T G+ R + + Y +F+G++ +
Sbjct: 121 ISRAGAERVLQTYNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHH 180
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK-------------CAEYSRQK 244
L +V V G ++V D +N+ ++G+ F+ + + C+ +
Sbjct: 181 LTEVFRTRYNSVKGAKVVID-RNTGRSKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRI 239
Query: 245 MTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
N LGT S+ +P+ + ++V NL NVT + LK++F +G +
Sbjct: 240 GPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELV 299
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
V +P K R GFV FA+RSSA +AL+ L GQ + S + A++++
Sbjct: 300 HVKIPSGK------RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQT 350
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 21/256 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D +G V VR+ + +S ++ G+A+V + N A++A++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L G + +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S +RG+ F+++ + A+ + K+ N K P V D NV S+
Sbjct: 154 IATD--PSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSN- 210
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNL VT D+LK++F +G IT VV G+ + GFV+F +A
Sbjct: 211 -IKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADAAA 268
Query: 332 KALKNTEKYELDGQAL 347
+A++ EL+G+
Sbjct: 269 QAVQ-----ELNGKIF 279
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 31/282 (10%)
Query: 104 VYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++I + L D FC + G + +I S E++G+ FV F E A AIDK
Sbjct: 125 IFIKNLDKSIDNKALYDTFC-AFGNILSCKIAT-DPSGESRGYGFVQFEKDESAQSAIDK 182
Query: 163 LNNTEFKGKKIRCS-----------TSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN KK+ +S K+ +++ N+ ++L+++ + G +T
Sbjct: 183 LNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYG-TIT 241
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTV 259
+++D S R F F+ + N A + Q++ F K +
Sbjct: 242 SAVVMRDSDGKS--RCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMEL 299
Query: 260 SWADPRNVDSSGAS-QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+NV Q +Y+KNL N+ ++L++LF +G IT V G +
Sbjct: 300 KEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS 359
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 360 -GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKA 400
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 31/180 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S VY+ + ++ +L++ G +T +M+ D +++ F FV F N + A++A+
Sbjct: 214 SNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDG-KSRCFGFVNFENADAAAQAVQ 272
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
+LN F K++ +Q K L++ N+ N E
Sbjct: 273 ELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEK 332
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+++ +E G +T ++++D S RG F+ + K AE + + +T N K+ + P
Sbjct: 333 LRELFAEYG-NITSCKVMRDSNGVS--RGSGFVAF---KSAEDANRALTEMNGKMVGSKP 386
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 21/254 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D +G V VR+ + +S ++ G+A+V + N A++A++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L G + +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S +RG+ F+++ + A+ + K+ N K P V D NV S+
Sbjct: 154 IATD--PSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSN- 210
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNL VT D+LK++F +G IT VV G+ + GFV+F +A
Sbjct: 211 -IKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADAAA 268
Query: 332 KALKNTEKYELDGQ 345
+A++ EL+G+
Sbjct: 269 QAVQ-----ELNGK 277
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 31/282 (10%)
Query: 104 VYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
++I + L D FC + G + +I S E++G+ FV F E A AIDK
Sbjct: 125 IFIKNLDKSIDNKALYDTFC-AFGNILSCKIAT-DPSGESRGYGFVQFEKDESAQSAIDK 182
Query: 163 LNNTEFKGKKIRCS-----------TSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN KK+ +S K+ +++ N+ ++L+++ + G +T
Sbjct: 183 LNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYG-TIT 241
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTV 259
+++D S R F F+ + N A + Q++ F K +
Sbjct: 242 SAVVMRDSDGKS--RCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMEL 299
Query: 260 SWADPRNVDSSGAS-QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+NV Q +Y+KNL N+ ++L++LF +G IT V G +
Sbjct: 300 KEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS 359
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 360 -GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKA 400
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 31/180 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S VY+ + ++ +L++ G +T +M+ D +++ F FV F N + A++A+
Sbjct: 214 SNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDG-KSRCFGFVNFENADAAAQAVQ 272
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
+LN F K++ +Q K L++ N+ N E
Sbjct: 273 ELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEK 332
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+++ +E G +T ++++D S RG F+ + K AE + + +T N K+ + P
Sbjct: 333 LRELFAEYG-NITSCKVMRDSNGVS--RGSGFVAF---KSAEDANRALTEMNGKMVGSKP 386
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 135/277 (48%), Gaps = 17/277 (6%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A + +Y+G + D +E L ++G V +RI + + + G+A+V F +
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVG 206
A KA+D +N KGK IR SQ A R +FI N+ ++ ++ L + S G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ K M + +RG+AF+ + N A+ + ++M K + + ++
Sbjct: 123 KILSS----KVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKD 177
Query: 267 VDS---SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
++ + A++ VY+KN ++ ++LK++F +G+ V V G+ K GFV
Sbjct: 178 REAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKG-FGFVS 236
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
F +A KA++ +++GQ L A+ +A++++
Sbjct: 237 FDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 123/279 (44%), Gaps = 36/279 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQIAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + Q K F +N+G E L++V S+ G +
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M++SS ++GF F+ + +H+ A+ + ++M + K A
Sbjct: 218 S----VKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L++ F G I++V V + G+ K
Sbjct: 274 ELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ-EEGRSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA-KP 354
G + F+ A KA+ L + L +LA KP
Sbjct: 333 G-FGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQKP 370
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 35/204 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ K + AEL + VYI D + L++ G+ V++M +DSS ++K
Sbjct: 173 KNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVM--RDSSGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ + +Q K
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRC 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L+I N+ E L++ S G + VK M+ ++GF I + + E
Sbjct: 291 QGVKLYIKNLDETIDDEKLRREFSSFGS----ISRVKVMQEEGRSKGFGLICFSS---PE 343
Query: 240 YSRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ ++ A
Sbjct: 344 EATKAMTEMNGRILGSKPLNIALA 367
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 127/254 (50%), Gaps = 18/254 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S L F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + + F+ Y + + A+ + +K+ +LG+ V ++ ++ +
Sbjct: 135 VATDEFGKS--KSYGFVHYEDEESAKEAIEKVN--GIQLGSKNVYVGHFIKKSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ LK+LF +G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLKELFSPYGEITSMIV---KTDNKNRKFCFINYADSESAKNA 247
Query: 334 LKNT--EKYELDGQ 345
++N +K DGQ
Sbjct: 248 MENLNGKKITDDGQ 261
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N++S Q +Y+KNL + LK+LFE +G IT V Q K GFV
Sbjct: 436 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKG-FGFV 494
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
FA + A KA+ ++G+ L LA
Sbjct: 495 CFALQEEANKAVTEMHLKIINGKPLYVGLA 524
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + + L++ + G +T ++M+ D ++KGF FV F E A+KA+
Sbjct: 448 GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFALQEEANKAV 506
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 507 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 540
>gi|297602825|ref|NP_001052934.2| Os04g0449900 [Oryza sativa Japonica Group]
gi|255675510|dbj|BAF14848.2| Os04g0449900 [Oryza sativa Japonica Group]
Length = 387
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 138/303 (45%), Gaps = 30/303 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
+++G + + E+ L GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 67 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 126
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN + + R S + Y +F+G++ + E L ++ + V
Sbjct: 127 TGHVMPNTDRPFKLNWASYSMGEKR-SEVASDYSIFVGDLAADVTDEMLMELFANKYRSV 185
Query: 210 TGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G +++ D N+ +RG+ F+ + +H E + + ++G P S D
Sbjct: 186 KGAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDS 244
Query: 265 RNVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+ S G S + VYV L NV++D+L+K F +G + V +P K + GF
Sbjct: 245 GSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGK------QCGF 298
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
V F R+ A +AL+ + QA+ S + + ++S S S + ++ P + GY
Sbjct: 299 VQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGY 358
Query: 382 GLA 384
G A
Sbjct: 359 GYA 361
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + G+A+V F + A +A+D
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ R+ ++ L + S G ++
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS-- 226
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + +RG+AF+ + N A+ + ++M K + + ++ ++ +
Sbjct: 227 --KVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELRN 283
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A++ VY+KN ++ ++LK++F +G+ V V G+ K GFV F +A
Sbjct: 284 KANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 342
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ L A+ ++++++
Sbjct: 343 KKAVEEMNGKDINGQLLFVGRAQKKSERQA 372
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 43/301 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQIAADRAIEEM 256
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + + K F +N+G E L++V S+ G +
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 316
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ VK M +SS ++GF F+ + +H+ A+ + ++M + + V A ++
Sbjct: 317 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKSER 370
Query: 269 SSGASQV--------------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
+ QV +Y+KNL + ++L + F G I++V + + G+
Sbjct: 371 QAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKI-MREEGR 429
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQN 374
K G + F+ A KA+ L + L +LA+ ++ + G +P L Q
Sbjct: 430 SKG-FGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQKPXERNAYHG----RPCLQQP 484
Query: 375 Y 375
+
Sbjct: 485 W 485
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + VYI D + L++ G+ V++M S ++KG
Sbjct: 272 KNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMT-DSSGKSKG 330
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ + +Q K
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQ 390
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+L+I N+ E L + S G + VK M+ ++GF I +
Sbjct: 391 GMKLYIKNLDDTIDDEKLWREFSSFG----SISRVKIMREEGRSKGFGLICF 438
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 126/254 (49%), Gaps = 18/254 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S L F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + + F+ Y + + A+ + +K+ +LG+ V ++ ++ +
Sbjct: 135 VATDEFGKS--KSYGFVHYEDEESAKEAIEKVN--GIQLGSKNVYVGHFIKKSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ LK+LF G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIV---KTDNKNRKFCFINYADSESAKNA 247
Query: 334 LKNT--EKYELDGQ 345
++N +K DGQ
Sbjct: 248 MENLNGKKITDDGQ 261
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D N++S Q +Y+KNL + LK+LFE +G IT V Q K GFV
Sbjct: 436 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKG-FGFV 494
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
FA + A +A+ ++G+ L LA
Sbjct: 495 CFALQEEANRAVTEMHLKIINGKPLYVGLA 524
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + + L++ + G +T ++M+ D ++KGF FV F E A++A+
Sbjct: 448 GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFALQEEANRAV 506
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 507 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 540
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 14/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G++ +R+ + + ++ G+A+V F A + +D
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ + S G + +
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFG-NILSCK 130
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D + ++G+ F+ + + + A + +K+ N K + A+
Sbjct: 131 VAID--DDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEK 188
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + VYVKN RN+TQ+QL LF+++G IT VV A P GF+ F E SA
Sbjct: 189 SKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVV-MANPDGTSKGFGFIAFEEPESAE 247
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
KA+ YEL+G L A+ ++++
Sbjct: 248 KAVTEMNNYELNGTNLYVGRAQKKSER 274
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 36/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ D +KG+ FV F ++E A+KAI+K+
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAI-DDDGVSKGYGFVHFESIEAANKAIEKV 160
Query: 164 NNTEFKGKKIRCST--------------SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ S+ +++ N RN E L + G +
Sbjct: 161 NGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYG-TI 219
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T ++ + +S +GF FI + + AE + +M N GTN V A ++
Sbjct: 220 TSCVVMANPDGTS--KGFGFIAFEEPESAEKAVTEMNNYELN-GTNL-YVGRAQKKSERI 275
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q VY+KNL D+L+K F G IT V G
Sbjct: 276 KELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKV--MTEGGR 333
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + + + +LA+ D+++
Sbjct: 334 SKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALAQRYEDRRA 378
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S G + + + +D + + + G+A++ + AE
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAG-QILSLRVCRDSR-TKQSLGYAYVNFSQTIEAERVLD 71
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF L P + W+ DP S S + V++KNL +++ + F G
Sbjct: 72 TM---NFDLLKGKPIRIMWSQRDP----SLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFG 124
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V G K GFVHF +A KA++ L+G+ + P+A+++
Sbjct: 125 NILSCKVAIDDDGVSKG-YGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREK 183
Query: 361 AGGSVSEK 368
G S+K
Sbjct: 184 EIGEKSKK 191
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G+ VYI + LR G +T ++M + +KGF FV F E ASKA
Sbjct: 294 QGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMT--EGGRSKGFGFVCFSTPEEASKA 351
Query: 160 IDKLNNTEFKGKKIRCSTSQ 179
I +++ K I + +Q
Sbjct: 352 ITEMDGRMIGSKPIYVALAQ 371
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +Y+G + + L D +G V VR+ + ++ + G+A+V F + A++A
Sbjct: 37 QATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARA 96
Query: 160 IDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
++ LN T GK IR S +FI N+ ++ ++ L S G +
Sbjct: 97 LEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG-NILS 155
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDS 269
++ +M S ++G+ F+++ + A+ + K+ N K P V + NV
Sbjct: 156 CKVATEM--SGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENV-- 211
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
SG + VYVKNL + T+D LK++F G IT VVV + G K+R GFV+F
Sbjct: 212 SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV--MREGDGKSRCFGFVNFENPD 269
Query: 329 SAMKALKNTEKYELD 343
A +A+++ + D
Sbjct: 270 DAARAVEDLNGKKFD 284
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D SS +G+ F+ Y + A+ + + + L V P+
Sbjct: 170 LSCKVAQDENGSS--KGYGFVHYETDEAAQQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 225
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ VT D+ ++LFE HG +T + + G+ + GFV+F
Sbjct: 226 SKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRG-FGFVNFT 284
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A KA++ +L GQ L A+
Sbjct: 285 THEAAAKAVEELNNKDLHGQELYVGRAQ 312
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I + ++ + R+ + G+VT I + +D +
Sbjct: 219 IPKKDRQSKFEEMKA---NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQD-GK 274
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A+KA+++LNN + G+++ +Q K+
Sbjct: 275 SRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKH 315
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ S +KG+ FV + E A +AI +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGS-SKGYGFVHYETDEAAQQAIKHV 203
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI ++ +++ G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHG-DV 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + ++ S RGF F+ + H+ A + +++ N + L V A ++
Sbjct: 263 TSSSIAREQDGKS--RGFGFVNFTTHEAAAKAVEELNNKD--LHGQELYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V D+L+ +F G IT V
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPITSAKV 370
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S +FI N+ + + L S G + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLN--GMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K VYVKNL + T D LK F +G+IT VV K G+ K++ GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 268
Query: 331 MKALKNTEKYELD 343
+A+++ ++ D
Sbjct: 269 ARAVESLNGHKFD 281
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 39/308 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D S G + ++ S ++KG+ FV + N E A KAI+KL
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 164 NNTEFKGKKI----------RCSTS-QAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N K++ R ST+ + K+ +++ N+ + +DL+ E G +T
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTVS 260
++KD + S +GF F+ + N A + + + F K +
Sbjct: 244 AVVMKDGEGKS--KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301
Query: 261 WADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
+N+ +++ Q +YVKNL +++ ++LK++F G +T V G K
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS- 360
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPSL- 371
GFV FA A +A+ ++ + L ++A+ + D++ S V+ +PS+
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 372 --LQNYPP 377
+ YPP
Sbjct: 421 PRMPVYPP 428
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 20 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 79
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S +FI N+ + + L S G + +
Sbjct: 80 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 138
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 139 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLN--GMLLNDKQVYVGPFLRRQERDSTAN 194
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K VYVKNL + T D LK F +G+IT VV K G+ K++ GFV+F A
Sbjct: 195 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 252
Query: 331 MKALKNTEKYELD 343
+A+++ ++ D
Sbjct: 253 ARAVESLNGHKFD 265
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 137/309 (44%), Gaps = 41/309 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D S G + ++ DSS ++KG+ FV + N E A KAI+K
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKV--AVDSSGQSKGYGFVQYANEESAQKAIEK 167
Query: 163 LNNTEFKGKKI----------RCSTS-QAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R ST+ + K+ +++ N+ + +DL+ E G +T
Sbjct: 168 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-IT 226
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTV 259
++KD + S +GF F+ + N A + + + F K +
Sbjct: 227 SAVVMKDGEGKS--KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 284
Query: 260 SWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+N+ +++ Q +YVKNL +++ ++LK++F G +T V G K
Sbjct: 285 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 344
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPSL 371
GFV FA A +A+ ++ + L ++A+ + D++ S V+ +PS+
Sbjct: 345 -GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSV 403
Query: 372 ---LQNYPP 377
+ YPP
Sbjct: 404 GPRMPVYPP 412
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 129/285 (45%), Gaps = 36/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GEV V++++ K +S+++G+ F+ F + A + +
Sbjct: 63 LWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 122
Query: 164 NNTEFK--GKKIRCSTSQAK-----------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T G+ R + + + +F+G++ + LQ+ P +
Sbjct: 123 NGTIMPNGGQNFRLNWATLSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSIK 182
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM------TNPNFKLG---------TN 255
G ++V D + + +G+ F+ + + + +M T P ++G +
Sbjct: 183 GAKVVID-RLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRP-MRIGPASNKNPSTQS 240
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
P S+ +P+ + ++V NL NVT D L+++F H+G + V +P K
Sbjct: 241 QPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGK---- 296
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
R GFV FA+RS A +AL+ L GQ + S + +++++
Sbjct: 297 --RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQA 339
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 145/307 (47%), Gaps = 20/307 (6%)
Query: 60 EVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLR 119
+V+E +E+ D+ + + + +E + A+ LP + +Y+G + +E L
Sbjct: 8 QVQESLEKLNLDSAPVATQETNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLF 67
Query: 120 DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179
+ +G+V+ +R+ + + ++ G+A+V F +E KAI++LN + G+ R SQ
Sbjct: 68 EIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQ 127
Query: 180 --------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIE 231
+ +FI N+ ++ L S G + ++ D N++ F F+
Sbjct: 128 RDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATD--EQGNSKCFGFVH 184
Query: 232 YHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVDSSGASQVKAVYVKNLPRN 286
Y + AE ++ + N N L + VS D + + VYVKN+
Sbjct: 185 Y---ETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLG 241
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
++++++KLFE +G+IT + + G+ K GFV+F +A+KA++ +++GQ
Sbjct: 242 FSEEEMRKLFEPYGKITSLHLEKDAEGKSKG-FGFVNFESHEAAVKAVEELNDKDINGQK 300
Query: 347 LECSLAK 353
L A+
Sbjct: 301 LYVGRAQ 307
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + + G +T R+M + ++KGF FV F + E A+KA
Sbjct: 332 QGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMV-DEHGKSKGFGFVCFSSPEEATKA 390
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N F GK + + +Q K
Sbjct: 391 ITEMNQRMFHGKPLYVALAQRK 412
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 16/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D +G V VR+ + ++ + G+A+V F + A++A++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L S G + +
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGT-ILSCK 160
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ ++ S ++G+ F++Y + A+ + ++ N K P V + NV G
Sbjct: 161 VATEI--SGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENV--FG 216
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + VYVKNL + T+D LK++F G IT V+V A G+ + GFV+F A
Sbjct: 217 SPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRC-FGFVNFENPDDAA 275
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
+A+++ +LD + L A+ ++++
Sbjct: 276 RAVEDLNGKKLDDKELYVGRAQKKSER 302
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 29/276 (10%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ R+ ++ L + S G ++
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW---------ADP 264
K M + ++G+AF+ + N A+ + ++M N KL + A+
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEM---NGKLLKDCKVFVGRFKNRKDREAEL 182
Query: 265 RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
RN AS+ VY+KN ++ ++L+++F +G+ V V G+ K GFV F
Sbjct: 183 RN----KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKG-FGFVSF 237
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+A KA++ +++GQ + A+ + ++++
Sbjct: 238 DNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQA 273
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 40/271 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + + K F +N+G E L++V S+ G +
Sbjct: 158 NGKLLKDCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTL 217
Query: 210 TGVELVKDMKN-SSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M + S ++GF F+ + NH+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + + Q +Y+KNL + ++L+K F G I++V V + GQ K
Sbjct: 274 ELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
G + F+ A KA+ E++GQ L
Sbjct: 333 G-FGLICFSSPEEATKAMT-----EMNGQIL 357
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + VYI D + LR+ G+ V++M S ++KG
Sbjct: 173 KNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKG 231
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F N E A KA++++N + G+ I +Q K
Sbjct: 232 FGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQ 291
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+L+I N+ E L+K S G + VK M+ ++GF I +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFGS----ISRVKVMQEEGQSKGFGLICF 339
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 17/270 (6%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 53 AHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTAD 112
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
KA+++LN T K + R SQ + +FI N+ ++ L + G
Sbjct: 113 GEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFG- 171
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
+ ++ +D N++G+ F+ Y + A+ + + + L V P+
Sbjct: 172 NILSCKVAQD--EHGNSKGYGFVHYETDEAAQQAIKHVNG--MLLNEKKVYVGHHIPKKD 227
Query: 268 DSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
S ++KA +Y+KNL +VT D+ +KLFE +G +T + + + GF++
Sbjct: 228 RQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFIN 287
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAK 353
F SA KA++ E+ GQ L A+
Sbjct: 288 FTTHESAAKAVEELNSREIHGQELYVGRAQ 317
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 28/166 (16%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI + D ++ + R + G VT I + +++ +
Sbjct: 223 IPKKDRQSKFEEMKA---NYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGK 279
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF F+ F E A+KA+++LN+ E G+++ +Q K+
Sbjct: 280 SRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKAS 339
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
L+I N+ E L+++ + GP +T +++++ + S+
Sbjct: 340 KYVGVNLYIKNLDDEVDDEKLRELFAPYGP-ITSAKVMRETASESD 384
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + + +KG+ FV + E A +AI +N KK+
Sbjct: 163 LHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGH 221
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ ++I N+ + ++ +K+ + G VT + +D + +
Sbjct: 222 HIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYG-AVTSSTIARD-QETGK 279
Query: 224 NRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA- 277
+RGF FI + H+ A E + +++ +G + A Q KA
Sbjct: 280 SRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKAS 339
Query: 278 ------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+Y+KNL V ++L++LF +G IT V
Sbjct: 340 KYVGVNLYIKNLDDEVDDEKLRELFAPYGPITSAKV 375
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
QA L++G + + L ++ S++GP V + + +D + + G+A++ Y++
Sbjct: 56 QASASLYVGELDESVTEAMLFELFSQIGP-VASIRVCRDAV-TRRSLGYAYVNYNSTADG 113
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L N P + W+ DP + +G + ++KNL + L
Sbjct: 114 EKALEEL---NYTLIKNRPCRIMWSQRDPA-LRKTGQGNI---FIKNLDAAIDNKALHDT 166
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 167 FAAFGNILSCKVAQDEHGNSKG-YGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPK 225
Query: 356 ADQKS 360
D++S
Sbjct: 226 KDRQS 230
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 20/267 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
H + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +A
Sbjct: 59 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 118
Query: 160 IDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
++ LN T KG+ R SQ + +FI N+ ++ L S+ G +
Sbjct: 119 LEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFG-NILS 177
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSS 270
++ +D N++G+ F+ Y + AE + Q + + N L + V + S
Sbjct: 178 CKVAQD--ELGNSKGYGFVHY---ETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQS 232
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VY+KN+ +V+ ++ KLFE +G + + + G+ + GFV+FA
Sbjct: 233 KLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRG-FGFVNFAS 291
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA KA++ E G+ L A+
Sbjct: 292 HESAAKAVEELNDKEFHGKKLYVGRAQ 318
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I D + K E+ A + + VYI I S+ + + GEV I + ++ +
Sbjct: 225 IAKRDRQSKLEEMKA---NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITR-DENGK 280
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E A+KA+++LN+ EF GKK+ +Q K+
Sbjct: 281 SRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKH 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D G + ++ + + +KG+ FV + E A++AI +
Sbjct: 151 VFIKNLDAAIDNKALHDTFSQFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANQAIKSV 209
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ AK ++I NI + E+ K+ G V
Sbjct: 210 NGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGE-V 268
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPRN 266
+ +D S RGF F+ + +H+ A + +++ + F KL V A ++
Sbjct: 269 VSATITRDENGKS--RGFGFVNFASHESAAKAVEELNDKEFHGKKL-----YVGRAQKKH 321
Query: 267 --------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 322 EREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGTITSAKV 376
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 17/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L + SIG V +R+ + + + G+A+V F++ A+ AID
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR SQ A R +FI N+ + ++ L ++ G +T +
Sbjct: 97 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 155
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D N++G+ F+++ + A+ + + N K P A+ N +G
Sbjct: 156 VAMD--GQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSN---TG 210
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++ VYVKNL N++ ++L++ F HG +T V+ + G+ K GFV + E A
Sbjct: 211 EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKG-FGFVCYEEPEGAA 269
Query: 332 KALKNTEKYELD 343
A++ + Y D
Sbjct: 270 AAVEKLDGYTED 281
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 50/313 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRI-MKGKDSSENKGFAFVTFRNVELASKAIDK 162
++I + L D G +T ++ M G+ +S KG+ FV F E A AID
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNS--KGYGFVQFETQEAAQAAIDN 184
Query: 163 LNNTEFKGKKI----------RCSTSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
+N E K++ R +T +AK+ +++ N+ N E L++ +E G VT
Sbjct: 185 VNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTS 243
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSS 270
+++D + S +GF F+ Y + A + +K+ G +W R +
Sbjct: 244 CVIMRDEEGKS--KGFGFVCYEEPEGAAAAVEKLD------GYTEDEKTWVVCRAQKKAE 295
Query: 271 GASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
+++KA +Y+KNL ++L++LF+ G IT V G
Sbjct: 296 REAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASG 355
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQ 373
+ FV F+ A +A+ + + L +LA+ + +++ + + Q
Sbjct: 356 VSRGS-AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERR-----MRLQAQFAQ 409
Query: 374 NYPPHIGYGLAGG 386
P G G+ GG
Sbjct: 410 RMP---GAGMPGG 419
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
A + +++ + + E+++ E +A G+ +YI + + LR+ + G +T R+
Sbjct: 294 AEREAELKAKFDQERRERMEKMA----GANLYIKNLEDGTDDEKLRELFKEFGTITSCRV 349
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
M+ S ++G AFV F + + A++A+ ++N K + + +Q K
Sbjct: 350 MRDA-SGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 396
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 219
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ ++VT+++ ++LFE G IT + + G+ + GFV+F+
Sbjct: 220 SKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFS 278
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ + E+ Q L A+
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++ E+ +++ + G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + +M + T V A ++
Sbjct: 257 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVDEMNEKEIR--TQKLYVGRAQKKHERE 312
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I D +E + R+ + GE+T + + ++ +
Sbjct: 213 ISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GK 268
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A+D++N E + +K+ +Q K+
Sbjct: 269 SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKH 309
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
K M + +RG+AF+ + N A+ + ++M K + D
Sbjct: 128 --KVMSDDQGSRGYAFVHFQNQMAADRAIEEMNGALLK---DCRLFVGRFKNRQDREAEL 182
Query: 274 QVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
Q KA +Y+KN ++ +L+++F +G+ V V G+ K GFV F
Sbjct: 183 QNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKG-FGFVSFYSHE 241
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+A KA++ +++GQ L A+ +A++++
Sbjct: 242 AAQKAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 37/299 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQMAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N FK ++ R + Q K F +N+G + L++V S+ G V
Sbjct: 158 NGALLKDCRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTV 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +S+ ++GF F+ +++H+ A+ + ++M + K A
Sbjct: 218 S----VKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + + Q +Y+KNL + ++L++ F G I++V V + G+ K
Sbjct: 274 ELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK-EEGRSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY 375
G + F+ A +A+ L + L +LA Q+ Q+ G V ++L +
Sbjct: 333 G-FGLICFSSPEEATRAMTEMNGRILGSKPLNIALA--QSLQQVXGMLVISAXTVLSEF 388
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ + + AEL + +YI D + L + G+ V++M DS+ ++K
Sbjct: 173 KNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVM--TDSTGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ + +Q K
Sbjct: 231 GFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRC 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L+I N+ E L++ S G + VK MK ++GF I + + E
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRREFSSFGS----ISRVKVMKEEGRSKGFGLICFSS---PE 343
Query: 240 YSRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ ++ A
Sbjct: 344 EATRAMTEMNGRILGSKPLNIALA 367
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P V + + EH L + G + E+R++ ++ N+G+AFVTF E A +
Sbjct: 32 PLQCTVVCENLHNSVLEHHLIPLLEKCGTIWEIRLIMDTVTNLNRGYAFVTFTTTEAAKE 91
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
A+++L++ E +G+ ++ S ++ RLF+GNIP + ++ ++ G+T V + K
Sbjct: 92 AVNQLHDFEMRGRHMKVRLSVSELRLFVGNIPNSKSKVEIMAEFNKFAAGLTEVIIYKS- 150
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKM 245
+ N GF F+EY +HK A ++Q++
Sbjct: 151 PDLEENGGFCFLEYDSHKSASMAKQRL 177
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +RI + + + + G+A+V F ++ A KA+D
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N +GK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSS-- 404
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M N G + ++ ++ S
Sbjct: 405 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEM-NGKLLQGCKVFVGRFKSRQDREAELRS 461
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 462 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 520
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + + A+ + ++++
Sbjct: 521 KKAVEEMNGRDINGQLIFVARAQKKVERQA 550
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G + ++M D +KG+AFV F+N A +AI+++
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 434
Query: 164 NNTEFKGKKI---RCSTSQ---AKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +G K+ R + Q A+ R ++I N + E L+ V S+ G +
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 494
Query: 210 TGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 495 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQA 550
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + QV +YVKNL + ++L+K F G I++V V + GQ K
Sbjct: 551 ELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EEGQSK 609
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A+KA+ L + L +LA+
Sbjct: 610 G-FGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 645
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 16/244 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D +G V VR+ + +S ++ G+A+V + N A++A++
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L G + +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S +RG+ F+++ + A+ + K+ N K P V D NV S+
Sbjct: 154 IATDP--SGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSN- 210
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNL VT D+LK++F +G IT VV G+ + GFV+F +A
Sbjct: 211 -IKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADAAA 268
Query: 332 KALK 335
+A++
Sbjct: 269 QAVQ 272
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR S +FI N+ + ++ L S G ++
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-- 128
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
K + N +RGF F+ + H+ A+ + M L V R + G
Sbjct: 129 --KVVYNEHGSRGFGFVHFETHEAAQKAINTMN--GMLLNDRKVFVGHFKSRQKREAELG 184
Query: 272 ASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + +YVKNL NV + +L+ LF G + V V GQ + GFV+F +
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ GQ L A+ +A+++S
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + +Y+ + + E L+D G + V++M+ + +++G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+D +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L++V S G + K M SS+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGV----ITSAKVMTESSHSKGFGFVCF 340
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + ++ L++ + G +T ++M +SS +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 20/265 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + SIG+V +R+ + + + G+A+V + + E KA++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ + +FI N+ ++ L + G + +
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCK 166
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 167 VAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
++KA +YVKN+ +VT + ++LFE HG IT + A+ Q K+R GFV++
Sbjct: 223 EMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--ARDDQGKSRGFGFVNYIRHE 280
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A A+ + E GQ L A+
Sbjct: 281 AAAVAVDHLNDIEFKGQKLYVGRAQ 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D ++ D R+ + G++T I + D +++GF FV + E A+ A+D
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIAR-DDQGKSRGFGFVNYIRHEAAAVAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+ EFKG+K+ +Q K+
Sbjct: 288 HLNDIEFKGQKLYVGRAQKKH 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 36/234 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNTEFKGKKI----------RCST---SQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ R S +A + +++ NI + ED +++ + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + FK V A ++
Sbjct: 256 TSASIARDDQGKS--RGFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVV 307
++ Q +Y+KNL +V ++L+ +F G IT KV++
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 134/277 (48%), Gaps = 17/277 (6%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A + +Y+G + D +E L +G V +RI + + + G+A+V F +
Sbjct: 3 VAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVG 206
A KA+D +N KGK IR SQ A R +FI N+ ++ ++ L + S G
Sbjct: 63 DAQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFG 122
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ K M + ++G+AF+ + + A+ + ++M N F + ++
Sbjct: 123 KILSS----KVMSDDRGSKGYAFVHFQSQSAADRAIEEM-NGKFLKDCKVFVGRFKSRKD 177
Query: 267 VDS---SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
++ + AS+ VY+KN ++ ++L+++F +GRI V V G+ + GFV
Sbjct: 178 REAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRG-FGFVS 236
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
F +A KA++ E++GQ + A+ + ++++
Sbjct: 237 FDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQA 273
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F++ A +AI+++
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMS--DDRGSKGYAFVHFQSQSAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + + K F +N+G E L++V S G +
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRIL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMT------NPNF------KLGTNA 256
+ VK M NS +RGF F+ + +H+ A + ++M P F K+ A
Sbjct: 218 S----VKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL N+ ++L+K F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A +A+ L + L +LA+
Sbjct: 333 G-FGLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K + AEL + VYI D + LR+ + G + V++M +++GF
Sbjct: 175 RKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-SCGKSRGFG 233
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------ 182
FV+F + E A KA++++N E G+ I +Q K
Sbjct: 234 FVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGA 293
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+L+I N+ N E L+K S G + VK M+ ++GF I + + +E +
Sbjct: 294 KLYIKNLDENIDDEKLRKEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---SEDAA 346
Query: 243 QKMTNPNFK-LGTNAPTVSWA 262
+ MT N + LG+ ++ A
Sbjct: 347 RAMTVMNGRILGSKPLNIALA 367
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR S +FI N+ + ++ L S G ++
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-- 128
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
K + N +RGF F+ + H+ A+ + M L V R + G
Sbjct: 129 --KVVYNEHGSRGFGFVHFETHEAAQKAINTMN--GMLLNDRKVFVGHFKSRQKREAELG 184
Query: 272 ASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + +YVKNL NV + +L+ LF G + V V GQ + GFV+F +
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ GQ L A+ +A+++S
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + +Y+ + + E L+D G + V++M+ + +++G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+D +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L++V S G + K M SS+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGV----ITSAKVMTESSHSKGFGFVCF 340
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + ++ L++ + G +T ++M +SS +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 126/265 (47%), Gaps = 14/265 (5%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + IG V +R+ + + + G+A+V + N +A+++L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N + KG+ R SQ + +FI N+ ++ L + G V ++
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG-NVLSCKVA 168
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSGAS 273
D S +G+ F+ Y + A+ + + + N K P +S + ++ +
Sbjct: 169 TDEHGRS--KGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKA 226
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
Q VYVKN+ VT ++ ++LFE G +T V+ + G+ K GFV+F + A K
Sbjct: 227 QFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKG-FGFVNFEKHEEAQKG 285
Query: 334 LKNTEKYELDGQALECSLAKPQADQ 358
+++ +EL+G+ L + A+ +A++
Sbjct: 286 VESLHDFELNGKKLFVTRAQKKAER 310
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETAEAADTAIKAV 196
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ +++ NI E+ +++ + G V
Sbjct: 197 NGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFG-NV 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + +D + S +GF F+ + H+ A+ + + + F+L V+ A +
Sbjct: 256 TSAVIQRDEEGRS--KGFGFVNFEKHEEAQKGVESLHD--FELNGKKLFVTRAQKKAERE 311
Query: 266 --------NVDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
+ S+ + V Y+KNL V ++L++ FE G IT V + G
Sbjct: 312 EELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSS 371
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + L SLA+
Sbjct: 372 KG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 408
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI + + + LR + G +T ++M+ + S +KGF FV F + + A+KA
Sbjct: 330 QGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGS-SKGFGFVCFSSPDEATKA 388
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++NN K + S +Q +
Sbjct: 389 VAEMNNKMIGTKPLYVSLAQRR 410
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 36 TSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQ 95
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S +FI N+ + + L S G + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFG-NIVSCK 154
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLN--GMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ K VYVKNL + T D LK F +G+IT VV G+ K GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKG-FGFVNFENADDAA 269
Query: 332 KALKNTEKYELD 343
+A+++ ++ D
Sbjct: 270 RAVESLNGHKFD 281
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 135/305 (44%), Gaps = 37/305 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D G + ++ DSS ++KG+ FV + N E A KAI+K
Sbjct: 126 IFIKNLDESIDHKALHDTFSVFGNIVSCKV--AVDSSGQSKGYGFVQYANEESAQKAIEK 183
Query: 163 LNNTEFKGKKI----------RCSTS-QAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R ST+ + K+ +++ N+ + +DL+ E G +T
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-IT 242
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTV 259
++KD S +GF F+ + N A + + + F K +
Sbjct: 243 SAVVMKDGDGKS--KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 260 SWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+N+ +++ Q +YVKNL +++ ++LK++F G +T V G K
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGS 360
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK---SAGGSVSEKPSL---L 372
GFV F+ A +A+ ++ + L ++A+ + D++ S V+ +PS+ +
Sbjct: 361 -GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRAQFSQVRPVAMQPSVGPRM 419
Query: 373 QNYPP 377
YPP
Sbjct: 420 PVYPP 424
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 24/247 (9%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L D +G++ +R+ + S + G+ +V + NV A++A++
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALE 88
Query: 162 KLNNTEFKGKKIRCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN T GK IR S YR ++I N+ + ++ L S G +
Sbjct: 89 VLNFTPVNGKPIRIMYS---YRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFG-NIL 144
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ D ++ + G+ F+++ N + A+ + K+ L V R S
Sbjct: 145 SCKVATD--SAGQSLGYGFVQFDNEESAKNAIDKLN--GMLLNDKQVYVGPFLRRQERES 200
Query: 271 GASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAER 327
G + K VYVKNL T++ LKK+F +G IT VV + G K+R GFV+F
Sbjct: 201 GTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVV--MRDGDGKSRCFGFVNFENP 258
Query: 328 SSAMKAL 334
A +++
Sbjct: 259 DDAARSV 265
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 113/279 (40%), Gaps = 39/279 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
+YI + L D + G + ++ DS+ ++ G+ FV F N E A AIDK
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKV--ATDSAGQSLGYGFVQFDNEESAKNAIDK 176
Query: 163 LNNTEFKGKKIRCS-----------TSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ T + K+ +++ N+ EDL+K+ E G +T
Sbjct: 177 LNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYG-AIT 235
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADPR 265
+++D S R F F+ + N A S + + F +G R
Sbjct: 236 SAVVMRDGDGKS--RCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGK----AQKKSER 289
Query: 266 NVDSSGASQVKA-----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
V+ G + +YVKNL ++T D+LK+LF G IT V G
Sbjct: 290 EVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV ++ A KAL + + L +LA+
Sbjct: 350 SKGS-GFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQ 387
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 21/274 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +Y+G + D +E L ++G V +RI + S + G+A+V F ++ A KA
Sbjct: 8 RAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKA 67
Query: 160 IDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTG 211
+D +N +GK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 68 LDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKILSS 127
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV-----SWADPRN 266
K M + +RG+ F+ Y + A+ + ++M N KL + S D
Sbjct: 128 ----KVMSDEEGSRGYGFVHYQDQSAADRAIEEM---NGKLLRDCTVFVDRFKSRKDREA 180
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
S S+ VY+KNL N+ + LK +F +G+ V V G+ K GFV F
Sbjct: 181 ELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKG-FGFVSFYN 239
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+A A++ +++GQ + A+ + ++++
Sbjct: 240 HEAARNAVEEMNGQDINGQTIFVGRAQKKVERQA 273
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G++ ++M ++ S +G+ FV +++ A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEGS--RGYGFVHYQDQSAADRAIEEM 157
Query: 164 NNT----------EFKGKK-----IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
N FK +K +R TS+ ++I N+ N E L+ + S+ G
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELRSKTSEFT-NVYIKNLGDNMDDEGLKNIFSKYGQT 216
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
++ V+++KD ++ ++GF F+ ++NH+ A + ++M + K+ A
Sbjct: 217 LS-VKVMKD--DNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + A Q +Y+KNL + + L++ F G I +V V + GQ K
Sbjct: 274 ELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQ-EAGQSK 332
Query: 317 NRIGFVHF 324
G + F
Sbjct: 333 G-FGLICF 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K + AEL + + VYI + + + L++ G+ V++MK D+ ++KGF
Sbjct: 175 RKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMK-DDNGKSKGFG 233
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------ 182
FV+F N E A A++++N + G+ I +Q K
Sbjct: 234 FVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAA 293
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+L+I N+ E L++ S G + VK M+ + ++GF I +
Sbjct: 294 KLYIKNLDETIDDETLRREFSSFGS----ICRVKVMQEAGQSKGFGLICF 339
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 18/273 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P GS +Y+G + + +E L + +IG V +R+ + + + G+A+V F A +
Sbjct: 43 PSGS-LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D LN + +GK R SQ +FI N+ + ++ L S G +
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFG-NIL 160
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-- 268
++V D S +G+ F+ Y + AE + K+ + V PR
Sbjct: 161 SCKVVTDENGS---KGYGFVHYETQEAAETAIAKVNG--MVINGKQVFVGIFVPRKERVE 215
Query: 269 -SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
G ++ V+VKNLP + T L +F G+IT VV+ + + GFV + +
Sbjct: 216 LGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKV 275
Query: 328 SSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
A A+ EL G+ L + A+ +A++++
Sbjct: 276 EDAQAAVNALNGTELAGKTLFVARAQKKAEREA 308
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ +P D ++ L D G++T V IMK D ++KGF FV + VE A A++
Sbjct: 224 TNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVN 283
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN TE GK + + +Q K L++ N+ + D
Sbjct: 284 ALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLD---DAID 340
Query: 198 LQKVVSEVGP--GVTGVELVKDMKNSSNNRGFAFIEY 232
K+ +E P +T V++++D K S RGF FI +
Sbjct: 341 EDKIRTEFAPFGTITSVKIMRDEKGKS--RGFGFICF 375
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 111/272 (40%), Gaps = 39/272 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + +++ D + +KG+ FV + E A AI K+
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVT--DENGSKGYGFVHYETQEAAETAIAKV 192
Query: 164 NNTEFKGKKIRCSTSQAK-------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N GK++ + +F+ N+P + L + S+ G +T
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGK-IT 251
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA-------- 262
V ++K + ++GF F+ Y + A+ + + +L V+ A
Sbjct: 252 SVVIMKS-SDDDKSKGFGFVCYEKVEDAQAAVNALNGT--ELAGKTLFVARAQKKAEREA 308
Query: 263 ------DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
D ++ Q +YVKNL + +D+++ F G IT V + + G+ +
Sbjct: 309 ELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSR 368
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
GF+ F+ A KA+ E++GQ ++
Sbjct: 369 G-FGFICFSSAEEATKAVT-----EMNGQTIQ 394
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 15/197 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ L ++ + +GP V + + +D + + G+A++ +H AE +
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGP-VVSIRVCRDAI-TRRSLGYAYVNFHAAVDAERALD 104
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ N+ L P + W+ DP V SG V ++KNL + + L F G
Sbjct: 105 TL---NYSLIRGKPCRIMWSQRDPA-VRKSGLGNV---FIKNLDKTIDNKALLDTFSAFG 157
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V + G + GFVH+ + +A A+ ++G+ + + P+ ++
Sbjct: 158 NILSCKVVTDENGSKG--YGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVE 215
Query: 361 AGGSVSEKPSL-LQNYP 376
G V++ ++ ++N P
Sbjct: 216 LGEGVTKFTNVFVKNLP 232
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + E +R G +T V+IM+ + +++GF F+ F + E A+KA
Sbjct: 326 QGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMR-DEKGKSRGFGFICFSSAEEATKA 384
Query: 160 IDKLNNTEFKG 170
+ ++N +G
Sbjct: 385 VTEMNGQTIQG 395
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 219
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ ++VT+++ ++LFE G IT + + G+ + GFV+F+
Sbjct: 220 SKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFS 278
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ + E+ Q L A+
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I D +E + R+ + GE+T + + ++ +
Sbjct: 213 ISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GK 268
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A+D++N E + +K+ +Q K+
Sbjct: 269 SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKH 309
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++ E+ +++ + G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + +M + T V A ++
Sbjct: 257 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVDEMNEKEIR--TQKLYVGRAQKKHERE 312
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L + +G+V +R+ + + + G+A+V + N + A++A++
Sbjct: 24 TSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALE 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR S +FI N+ ++ ++ L + G + +
Sbjct: 84 LLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFG-TILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F+++ + A+ + +K+ N K P V + D SG
Sbjct: 143 VATD--PSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQE---RDQSG 197
Query: 272 -ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
S+ VYVKNL + T D+LKK+FE +G I+ VV G+ K GFV+F A
Sbjct: 198 VVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKC-FGFVNFEHADDA 256
Query: 331 MKALK--NTEKYE 341
KA++ N +K++
Sbjct: 257 AKAVEALNGKKFD 269
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 114/282 (40%), Gaps = 41/282 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ S ++KG+ FV F E A AI+
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVAT-DPSGQSKGYGFVQFEQEESAQTAIE 170
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
K+N K++ S +K+ +++ N+ + ++L+KV GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGP-I 229
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVD 268
+ +++D N ++ F F+ + + A + + + F W R
Sbjct: 230 SSAVVMRD--NEGKSKCFGFVNFEHADDAAKAVEALNGKKFD------EKEWYVGRAQKK 281
Query: 269 SSGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
S ++++A +Y+KNL + ++L+++F +G I V
Sbjct: 282 SEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDP 341
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GQ + GFV F+ A +A+ + + L +LA+
Sbjct: 342 QGQSRGS-GFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQ 382
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 18/223 (8%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
+ P S +Y+G + + SE L + +G V+ +R+ + ++ + +A+V + N
Sbjct: 4 SFTPISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAAD 63
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGP 207
A +A+D LNNT +GK R SQ L FI N+ + + L S G
Sbjct: 64 AERALDTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG- 122
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
+ ++V D NSS +GF F+ Y + A+ + K+ + N V ++
Sbjct: 123 NILSCKVVTDDNNSS--KGFGFVHYESQDSADKAIAKVNG----MMINGQKVFVGPFKSS 176
Query: 268 DSSG-ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
G +++K V+ KNL +VT DQLK+L +G IT V +
Sbjct: 177 KERGQPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAI 219
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GI H A L D + G + +++ D++ +KGF FV + + + A KAI K+N
Sbjct: 108 GIDHKA----LYDTFSAFGNILSCKVVT-DDNNSSKGFGFVHYESQDSADKAIAKVNGMM 162
Query: 168 FKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
G+K+ R ++ K+ +F N+ + S+ L+++++ G +T V ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEIKFTNVFFKNLAEDVTSDQLKELLAPYG-TITNVAIML 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG----- 271
D K + ++GFAF N + A+ ++ + N K+ P + + ++
Sbjct: 222 DEK-TGKSKGFAF---ANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHT 277
Query: 272 ---ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
Q +Y+KN+ ++ D+L+++F G IT VV GFV +
Sbjct: 278 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPD 337
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
A +A+ + + L +LA+
Sbjct: 338 EATRAVTEMNGRMIGTKPLYVALAQ 362
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI I LR+ G +T +MK ++ +KGF FV + + + A++A
Sbjct: 283 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRA 342
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 343 VTEMNGRMIGTKPLYVALAQRK 364
>gi|255554923|ref|XP_002518499.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542344|gb|EEF43886.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 430
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 53/300 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + + E+ + GEVT V++++ K + + +G+ F+ F + A + +
Sbjct: 91 LWIGDLQYWMDENYINSCFAHTGEVTSVKVIRNKQTGQVEGYGFIEFGSHGTAERILQTY 150
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN F G R T + +F+G++ + LQ P V
Sbjct: 151 NGTPMPNGEQNFRLNWASFSGGDKRDDT--PDFTIFVGDLAADVTDYILQDTFRVHYPSV 208
Query: 210 TGVELVKDMKNSSNNRGFAFIEY----------HNHKCAEYSRQKM-----TNPNFKLGT 254
G ++V D + + +G+ F+ + + A S + M TN N G
Sbjct: 209 KGAKVVID-RLTGRTKGYGFVRFGDESEQVRAMTDMNGAFCSTRPMRIGLATNKNAVTGQ 267
Query: 255 NAPTVSWADPRNVDSSGASQ----VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
P S+ +N + G ++ ++V NL NVT D L++LF +G++ V +P
Sbjct: 268 QYPKASY---QNSQTQGENENDPNNTTIFVGNLDSNVTDDNLRELFGRYGQLLHVKIPAG 324
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK--------PQADQKSAG 362
K R GFV FA+RS A +AL+ L GQ++ S + P A+Q +AG
Sbjct: 325 K------RCGFVQFADRSCAEEALRLLNGTSLSGQSIRLSWGRSPSNKQPQPDANQWNAG 378
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR S +FI N+ + ++ L S G ++
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-- 128
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
K + N +RGF F+ + H+ A+ + M L V R + G
Sbjct: 129 --KVVYNEHGSRGFGFVHFETHEAAQKAINTMN--GMLLNDRKVFVGHFKSRQKREAELG 184
Query: 272 ASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + +YVKNL NV + +L+ LF G + V V GQ + GFV+F +
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ GQ L A+ +A+++S
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + +Y+ + + E L+D G + V++M+ + +++G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSN-GQSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+D +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L++V S G + K M SS+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGV----ITSAKVMTESSHSKGFGFVCF 340
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + ++ L++ + G +T ++M +SS +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V+ +R+ + + + G+A+V F + A
Sbjct: 24 PLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAE 83
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
+A++ LN + KG+ R SQ L FI N+ + + L S G +
Sbjct: 84 RALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFG-NI 142
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D N++G+ F+ Y + AE S K N L V R
Sbjct: 143 LSCKIAHD--EQGNSKGYGFVHYETLEAAE-SAIKSVN-GMLLNDRKVFVGHHISRKERE 198
Query: 270 S--GASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S G S+V+ +YVKN+P +VT ++L +LF +G IT V+ G K GFV+F
Sbjct: 199 SKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKG-FGFVNFE 257
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+ A A+ + K + GQ L S A+
Sbjct: 258 KHQDAQNAVDDLHKKDFRGQDLYVSRAQ 285
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 113/272 (41%), Gaps = 39/272 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +I + +KG+ FV + +E A AI +
Sbjct: 118 IFIKNLDPSIDHKALHDTFSAFGNILSCKIAH-DEQGNSKGYGFVHYETLEAAESAIKSV 176
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ + S+ ++ +++ NIP + E+L ++ + G +
Sbjct: 177 NGMLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYG-TI 235
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + ++GF F+ + H+ A+ + + +F+ G + VS A +N
Sbjct: 236 TSCVITRD--DDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFR-GQDL-YVSRAQKKNERE 291
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +YVKNL ++ D+L+ F +G IT + +
Sbjct: 292 EELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNI 351
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
GFV F A +A+ E++G+ +
Sbjct: 352 SRGFGFVCFTSPEDATRAVT-----EMNGRII 378
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 134/276 (48%), Gaps = 18/276 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + ++G V+ +R+ + + ++ G+A+V + N+ A +A+D
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T KG+ R S L F+ N+ ++ ++ L S G + +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S + + F+ Y + + A+ + +K+ +LG+ V ++ ++ +
Sbjct: 135 VATDEFGKS--KSYGFVHYEDEESAKEAIEKVN--GVQLGSKNVYVGPFIKKSERATNDT 190
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ +YVKN P +VT+ L++LF +G IT ++V K + + F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNA 247
Query: 334 LKNT--EKYELDGQALECSLAKPQADQKSAGGSVSE 367
+ N +K DGQ E K + S G+ ++
Sbjct: 248 MDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQ 283
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
D NV++ Q +Y+KNL + L++LFE G IT V + Q K GFV
Sbjct: 437 DNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKG-FGFV 495
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLA 352
FA + A KA+ ++G+ L LA
Sbjct: 496 CFASQEEANKAVTEMHLKIINGKPLYVGLA 525
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +YI + + LR+ + G +T ++M+ + ++KGF FV F + E A+KA+
Sbjct: 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMR-DEKEQSKGFGFVCFASQEEANKAV 507
Query: 161 DKLNNTEFKGKKI----------RCSTSQAKYRL 184
+++ GK + R S Q ++R+
Sbjct: 508 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRM 541
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 14/239 (5%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G +P + DL ++G++ ++++K +S+ + FAFVTF N E A KA+ +
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAVREY 73
Query: 164 NNTEFKGKKIRCSTSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+ E ++IR + +F+ N+P ++ S+DL S G + ++ +
Sbjct: 74 KHYELHDRQIRVMRKDERPPETGNIFVKNLPESFTSKDLDDAFSMFGE-IVSCKVATTPQ 132
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADP---RNVDSSGASQV 275
S +G+ F+++ + A+ + N N LG N V +P + ++
Sbjct: 133 GKS--KGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMF 190
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
++KN P +V + +L L E +G++T + P G+ K F +F SA+ A+
Sbjct: 191 TNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKG-FAFANFETHESALNAI 248
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 130/344 (37%), Gaps = 41/344 (11%)
Query: 67 EEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIG 126
E EEDA+ E D + + PP +++ +P + DL D G
Sbjct: 61 ENEEDAEKAVREYKHYELHDRQIRVMRKDERPPETGNIFVKNLPESFTSKDLDDAFSMFG 120
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE---FKGKKIRC-------- 175
E+ ++ ++KG+ FV F+ A K I NN G KI
Sbjct: 121 EIVSCKVAT-TPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMK 179
Query: 176 -----STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFI 230
S FI N P + G ++L ++ + G + L K+ +GFAF
Sbjct: 180 KGESKKVSTMFTNCFIKNFPGSVGEKELLDLLEKYGKVTS---LCFPTKDDGKPKGFAFA 236
Query: 231 EYHNHKCAEYSRQKM--TNP--NFKLGTNAPTVSWADPR------------NVDSSGASQ 274
+ H+ A + + T P N K G + R + G +
Sbjct: 237 NFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNY 296
Query: 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
K +Y+ N+P ++L +F+ G IT + V +K + ++ ++ A A+
Sbjct: 297 KKNLYITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQK-QYAYICYSTPEEASIAV 355
Query: 335 KNTEKYELDGQALECSLAKPQADQ---KSAGGSVSEKPSLLQNY 375
+ + LDG L+ + K + ++ K GG + KP + Y
Sbjct: 356 ERGNEIYLDGNRLQVAYFKNKLERMKEKEFGG-LGYKPGIPYMY 398
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + D+ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 282 THESAQAAVEEMNDKEIRSQKLYVGRAQ 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ ++ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L++LF +G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 367
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + + + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GK 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 312
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 16/262 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + A+E L IG V RI + + + G+ +V F + A +A++
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN F G+ IR SQ K +FI N+ + + L S +G + +
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIG-KILSCK 119
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D N++G+ F+ + +CAE + +K+ N ++ + +D ++ +SG
Sbjct: 120 IAMD--EHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKS--ASG 175
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +YVKN P + T ++L+ +F G I V G+ K GFV F + A
Sbjct: 176 KLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKG-FGFVCFHDPDHAE 234
Query: 332 KALKNTEKYELDGQALECSLAK 353
+A++ E++G+AL S A+
Sbjct: 235 QAVRVMHGKEINGRALYASRAQ 256
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 34/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D IG++ +I + +KG+ FV F E A +AI+K+
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAM-DEHGNSKGYGFVHFEKEECAERAIEKI 149
Query: 164 N------NTEFKGKKIRCS---TSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N + GK I S ++ K R +++ N P + E L+ + SE G +
Sbjct: 150 NGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFG-EIKS 208
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR------ 265
+ K+ + S +GF F+ +H+ AE + + M ++ A S A +
Sbjct: 209 CCVEKNPEGKS--KGFGFVCFHDPDHAEQAVRVMHGK--EINGRALYASRAQRKEERQEE 264
Query: 266 ---NVDSSGASQVKA------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++ A ++ +YVKNL N+ ++LK+ F H+G IT V G+ K
Sbjct: 265 LKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSK 324
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F + A +A+ + + L +LA+ + D+++
Sbjct: 325 G-FGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRA 367
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ L SE+G V + +D+ + N+ G+ ++ + K AE +
Sbjct: 3 LYVGDLHPLATEALLYSKFSEIG-TVLSARICRDLA-TRNSLGYGYVNFEEPKDAE---R 57
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ N N++ P + W+ DP ++ SG + ++KNL + + Q QL F G
Sbjct: 58 ALENLNYESFMGRPIRIMWSQRDP-SLRKSGKGNI---FIKNLDKTIDQKQLYDTFSFIG 113
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+I + + G K GFVHF + A +A++ ++ + + P +D+KS
Sbjct: 114 KILSCKIAMDEHGNSKG-YGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKS 172
Query: 361 AGGSVSEKPSLLQNYPP 377
A G + ++N+PP
Sbjct: 173 ASGKLRFNNIYVKNFPP 189
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 89 KKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFV 148
K+ AE L+ G +Y+ + + + L++ G +T ++M + +KGF FV
Sbjct: 271 KQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANG-RSKGFGFV 329
Query: 149 TFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F E A++A+ ++N T K + + +Q K
Sbjct: 330 CFTQPEQAARAVTEMNATLVGSKPLYVALAQRK 362
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + SE L + +G+V +R+ + + + G+A+V + + + A++A++
Sbjct: 28 TSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALE 87
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + G IR S +FI N+ + ++ L S G G+ +
Sbjct: 88 LLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFG-GILSCK 146
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F+++ + A + +K+ N K P V + R+ S G
Sbjct: 147 VAVD--GSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQE-RD-QSGG 202
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
S+ VYVKNL N T+D LK +F +G I+ VV G+ K GFV+F +A
Sbjct: 203 VSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKC-FGFVNFEHPDNAA 261
Query: 332 KAL 334
KA+
Sbjct: 262 KAV 264
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 117/289 (40%), Gaps = 41/289 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ S ++KG+ FV F E A AI+
Sbjct: 116 ANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAV-DGSGQSKGYGFVQFEQEESALTAIE 174
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
K+N K++ S +K+ +++ N+ N +DL+ V G +
Sbjct: 175 KVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYG-TI 233
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVD 268
+ +++D S + F F+ + + A + + + G W R
Sbjct: 234 SSAVVMRDSDGKS--KCFGFVNFEHPDNAAKAVEALN------GKKRDEKEWYVGRAQKK 285
Query: 269 SSGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
S ++++A +Y+KNL V ++L++LF +G IT V
Sbjct: 286 SEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDP 345
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GQ + GFV F+ A +A+ + + L +LA+ + ++++
Sbjct: 346 QGQSRGS-GFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRA 393
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 19/274 (6%)
Query: 97 LPPHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
LPP GS +Y+G + E L + V VR+ + S + G+ +V F + +
Sbjct: 28 LPPLGSMASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQ 87
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A++A++ LN T GK IR S + LF+ N+ N S++L ++ S G
Sbjct: 88 EATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG 147
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
+ ++ D ++ ++G+ F++Y + AE + + N L N R
Sbjct: 148 -AILSCKVATD--SAGQSKGYGFVQYETEESAEAAINGL---NGMLANNRKMFVGLHMRR 201
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
D + VY+KNLP ++D L++ F G IT VV G K GFV+F +
Sbjct: 202 RDRE--VKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKC-FGFVNFKK 258
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
A++A++ + + L A+ + ++K+
Sbjct: 259 PEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKA 292
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 38/285 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ +++ + + +L + S G + ++ DS+ ++KG+ FV + E A AI
Sbjct: 123 ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV--ATDSAGQSKGYGFVQYETEESAEAAI 180
Query: 161 DKLNNT------EFKGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+ LN F G +R + K+ ++I N+P + +DL++ + G +T
Sbjct: 181 NGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGE-ITSAV 239
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPR------- 265
+++D +S GF N K E++ + + N K +G V A +
Sbjct: 240 VMRDADGASKCFGFV-----NFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAEL 294
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
VD + Y+KN+ + + LKKLFE G++ V G+
Sbjct: 295 KTRFGRGRDNKVDKPNGINL---YLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRS 351
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV FA + +A+ + + L LA+P+ ++K+
Sbjct: 352 KGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKA 395
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 224
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + D+ +K+FE G IT + + G+ + GFV+F+
Sbjct: 225 SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 283
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 284 THESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ ++ +K+ + G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 262 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L++LF +G IT V
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + + + R + GE+T + + ++ +
Sbjct: 218 ISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GK 273
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 274 SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 314
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 15/241 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + SE+ L D IG+V +R+ + + + G+A+V + NV+ A++A++
Sbjct: 4 TSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALE 63
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK +R S +FI N+ R ++ L G + +
Sbjct: 64 LLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFG-NILSCK 122
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D ++ ++G+ F+++ + A+ + K+ N L R +
Sbjct: 123 VATD--SNGQSKGYGFVQFEQEESAQVAIDKV---NGMLVAEKQVFVGPFVRRQEREQNG 177
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ V+VKNL + T D+LK++F G+IT VV G+ K GFV+F A KA
Sbjct: 178 KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKC-FGFVNFENPDEAAKA 236
Query: 334 L 334
+
Sbjct: 237 V 237
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 28/254 (11%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ ++I + L D S G + ++ DS+ ++KG+ FV F E A AI
Sbjct: 92 ANIFIKNLDRAIDNKALHDTFVSFGNILSCKV--ATDSNGQSKGYGFVQFEQEESAQVAI 149
Query: 161 DKLNNT------EFKGKKIRCSTSQAKYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
DK+N F G +R + + +F+ N+ + ++L++V G +T
Sbjct: 150 DKVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDDELKEVFGAFG-KITS 208
Query: 212 VELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGT-------NAPTV 259
+++D S + F F+ + N + +K+ + + +G A
Sbjct: 209 AVVMRDSDGKS--KCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELR 266
Query: 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
+ + + Q +Y+KNL +V ++L+++F G IT V GQ K
Sbjct: 267 AKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGS- 325
Query: 320 GFVHFAERSSAMKA 333
GFV ++ A +A
Sbjct: 326 GFVAYSAPEEANRA 339
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 23/277 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV---E 154
P S +Y+G + D +E L + S+G V +R+ + + + G+A+V + + +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A +A++ LN GK +R S +FI N+ + ++ L S G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWAD- 263
+ ++ D S +G+ F+ + + A+ + Q + K+ AP AD
Sbjct: 139 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADR 195
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
PR + V+VKNLP ++ D+L K+ HG IT VV G K GF++
Sbjct: 196 PR-----ARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG-FGFIN 249
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
F + SA K ++ + E+ G+ L A+ + ++++
Sbjct: 250 FKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREA 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 12/209 (5%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
ST A L++G++ ++ L ++ S VGP V + + +D + + G+A++ Y++
Sbjct: 16 ASTPLANSSLYVGDLEKDVTEAQLFELFSSVGP-VASIRVCRD-AVTRRSLGYAYVNYNS 73
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQ 291
+ + + M N+ + P + W+ DP S+ S V +++KNL + +
Sbjct: 74 ALDPQAADRAMETLNYHVVNGKPMRIMWSHRDP----SARKSGVGNIFIKNLDKTIDAKA 129
Query: 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351
L F G+I V G K GFVHF ++++A +A++ + +++G+ + +
Sbjct: 130 LHDTFSAFGKILSCKVATDANGVSKG-YGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAP 188
Query: 352 AKPQADQKSAGGSVSEKPSLLQNYPPHIG 380
+ +AD+ A + ++N P IG
Sbjct: 189 FQKRADRPRARTLYTN--VFVKNLPADIG 215
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ +P D + +L GE+T +MK D +KGF F+ F++ E A+K ++
Sbjct: 203 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVE 261
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN E GK + +Q K L++ N+ +D
Sbjct: 262 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDD 321
Query: 198 -LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256
L+++ + G +T +++KD S ++GF F+ + +H E +R +T N K+
Sbjct: 322 ALRELFANSGT-ITSCKVMKD--GSGKSKGFGFVCFTSHD--EATRPPVTEMNGKMVKGK 376
Query: 257 PT-VSWADPRNVDSSGASQVKA 277
P V+ A ++V A+Q++A
Sbjct: 377 PLYVALAQRKDVRR--ATQLEA 396
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + G+A+V F + A KA+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 226
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
K M + +RG+AF+ + N A+ + ++M K + + ++ ++ +
Sbjct: 227 --KVMSDDQGSRGYAFVHFQNQNAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELQN 283
Query: 274 QVK---AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+V VYVKN ++ ++LK++F +G+ V V G+ K GFV F +A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKG-FGFVSFDSHEAA 342
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ L A+ ++++++
Sbjct: 343 KKAVEEMNGKDVNGQLLFVGRAQKKSERQA 372
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 39/286 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQNAADRAIEEM 256
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + Q K F +N+G E L++V S+ G +
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTL 316
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ VK M +S ++GF F+ + +H+ A+ + ++M + + V A ++
Sbjct: 317 S----VKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKD--VNGQLLFVGRAQKKSER 370
Query: 269 SSGASQV--------------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
+ Q+ +Y+KNL + ++L + F G I++V + + G+
Sbjct: 371 QAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKI-MREEGR 429
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K G + F+ A KA+ L + L +LA+ ++K+
Sbjct: 430 SKG-FGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERKN 474
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + VY+ D + L++ G+ V++M ++KG
Sbjct: 272 KNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMT-DSGGKSKG 330
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ + +Q K
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQ 390
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+L+I N+ E L + S G + VK M+ ++GF I +
Sbjct: 391 GMKLYIKNLDDTIDDEKLWREFSSFG----SISRVKIMREEGRSKGFGLICF 438
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 17/261 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 48 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN T KG+ R SQ L FI N+ ++ L + G +
Sbjct: 108 ALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFG-NIL 166
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D + N++G+ F+ Y + A + + + L V P+ S
Sbjct: 167 SCKVAQD--ENGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVYVGHHIPKKERQS 222
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ V+ D+ + LFE+ G+IT + GFV+F+
Sbjct: 223 KFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSS 282
Query: 327 RSSAMKALKNTEKYELDGQAL 347
+A A+ + EL GQAL
Sbjct: 283 HEAAAAAVDALHETELKGQAL 303
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ I + S+ + R ++ G++T + + DS ++GF FV F + E A+ A+D
Sbjct: 232 TNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVD 291
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
L+ TE KG+ + +Q K+
Sbjct: 292 ALHETELKGQALFVGRAQKKH 312
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 125/313 (39%), Gaps = 58/313 (18%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
HG+ V+I + L D + G + ++ + ++ + +KG+ FV + E A+ A
Sbjct: 138 HGN-VFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETAEAATNA 195
Query: 160 IDKLNNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEV 205
I +N KK+ Q+K+ +++ NI ++ + +
Sbjct: 196 IKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENF 255
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +T L +D +S +RGF F+ + +H+ A + + K A V A +
Sbjct: 256 G-QITSASLARD-GDSGTSRGFGFVNFSSHEAAAAAVDALHETELK--GQALFVGRAQKK 311
Query: 266 N--------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV---- 307
+ ++ + Q +YVKNL + ++L++ F +G IT V
Sbjct: 312 HEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDS 371
Query: 308 ---PPAKPGQE-----------------KNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
P K G+E GFV F+ A KA+ + ++G+ L
Sbjct: 372 LDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPL 431
Query: 348 ECSLAKPQADQKS 360
+LA+ + +KS
Sbjct: 432 YVALAQRKDVRKS 444
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 225
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL VT ++ ++LFE +G IT + + GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A+++ E GQ L A+
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ + + + + R+ + GE+T + + ++ +
Sbjct: 218 IAKKDRQSKFEEMKA---NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGK 274
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F N + A+ A++ LN+ E+KG+K+ +Q K+
Sbjct: 275 SRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + NH A + + + + +K V A ++
Sbjct: 262 TSASLSRD-NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYK--GQKLYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 319 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 53/135 (39%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK------------------------ 135
G +Y+ + D + LRD G +T R+M+
Sbjct: 337 QGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENV 396
Query: 136 ---------GKDSSE--------------------NKGFAFVTFRNVELASKAIDKLNNT 166
G+DS+E +KGF FV F N + ASKA+ ++N
Sbjct: 397 KEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQR 456
Query: 167 EFKGKKIRCSTSQAK 181
GK + + +Q K
Sbjct: 457 MVNGKPLYVALAQRK 471
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 225
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL VT ++ ++LFE +G IT + + GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A+++ E GQ L A+
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
I +D + K E+ A + + VY+ + + + + R+ + GE+T + + ++
Sbjct: 217 HIAKKDRQSKFEEMKA---NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETG 273
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F N + A+ A++ LN+ E+KG+K+ +Q K+
Sbjct: 274 KSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + NH A + + + + +K V A ++
Sbjct: 262 TSASLSRD-NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYK--GQKLYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 319 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 18/177 (10%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
+F G IP++ ++L + + G + + L+ D + NRG+AF+ + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMD-PMTGTNRGYAFVTFT-------SRD 231
Query: 244 KMTNPNFKLGTNAPTVSWADPRN-VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
N ++ V WADP+ D S+VK +YV+NL ++ ++++LK+ FE G++
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEAFGKV 291
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
+V ++ FVHF +R A+ A+K+ + +++G A+E SLAKP +D+K
Sbjct: 292 ERV--------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKK 340
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P +G EV+ G IP D E +L + G++ ++R+M + N+G+AFVTF + + A
Sbjct: 175 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAC 234
Query: 158 KAI 160
A+
Sbjct: 235 NAV 237
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 18/252 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 31 TSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 90
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K +R S +FI N+ + + L S G + +
Sbjct: 91 VLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFG-NILSCK 149
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S ++G+ F+++ + + A+ + K+ + V + S S
Sbjct: 150 VATDA--SGQSKGYGFVQFDSEEAAQNAIDKLN--GMLINDKQVYVGNFLRKQERDSALS 205
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+K +YVKNL + T + LK +FE HG IT VV G+ K GFV+F A
Sbjct: 206 NIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKC-FGFVNFENVDDAA 264
Query: 332 KALK--NTEKYE 341
KA++ N +K++
Sbjct: 265 KAVEALNGKKFD 276
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 40/310 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D S G + ++ S ++KG+ FV F + E A AID
Sbjct: 119 ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAID 177
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ + S K+ +++ N+ + EDL+ + E G +
Sbjct: 178 KLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHG-AI 236
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPT 258
T +++D S + F F+ + N A + + + F K
Sbjct: 237 TSAVVMRDADGKS--KCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELE 294
Query: 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+ ++++S Q +Y+KNL +V ++LK+LF G IT V G +
Sbjct: 295 LKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGS 354
Query: 319 IGFVHFAERSSAMKALK--------NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPS 370
GFV F+ A +AL + Y Q E A+ QA Q S V+ PS
Sbjct: 355 -GFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQA-QFSQMRPVAMAPS 412
Query: 371 L---LQNYPP 377
+ +Q YPP
Sbjct: 413 VAPRMQMYPP 422
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 23/274 (8%)
Query: 96 ALPPH---GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN 152
A P H + +Y+G + +E L + SIG+V +R+ + + + G+A+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 153 VELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSE 204
E KA+++LN T KGK R SQ + +FI N+ ++ L +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G + ++ +D N++G+ F+ Y + A + + + L V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIP 213
Query: 265 RNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-I 319
+ S ++KA +YVKN+ +V+ D + LFE HG IT + A+ Q K+R
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASI--ARDDQGKSRGF 271
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV++ + +A A+ + GQ L A+
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D S+ D RD + G++T I + D +++GF FV + E AS A+D
Sbjct: 229 TNIYVKNIDLDVSDDDFRDLFEKHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASAAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+T+F+G+K+ +Q K+
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKH 308
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNTEFKGKKI----------RCST---SQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ R S +A + +++ NI + +D + + + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + +RGF F+ Y H+ A + + + +F+ V A ++
Sbjct: 256 TSASIARD--DQGKSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 164 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 218
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + +++++ +++FE G IT + + G+ + GFV+++
Sbjct: 219 SKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRG-FGFVNYS 277
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 278 THDSAQAAVDEMNDKEVKGQKLYVGRAQ 305
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + SE + R + GE+T + + ++ +
Sbjct: 212 ISKKDRQSKFEEMKA---NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GK 267
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + + A A+D++N+ E KG+K+ +Q K+
Sbjct: 268 SRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKH 308
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ + E+ +++ + G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ Y H A+ + +M + K V A ++
Sbjct: 256 TSATLSRDQEGKS--RGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L+++F +G IT V
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-N 266
GV V + + + NRGFAF+EY +H+ A +R+K+ +L + V WA+P
Sbjct: 7 GVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVE 66
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
VD S VK +YV+NL + +++ ++K F + + P A +K R FVHF+
Sbjct: 67 VDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFS 119
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKP 354
R A++A+K LDG +E +LAKP
Sbjct: 120 NREDAVEAMKALNGKVLDGSPIEVTLAKP 148
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 126/275 (45%), Gaps = 42/275 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L+D ++G V+EVRI+K + + + G AFV F + + A+ A+ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 164 NNTEFKGKKIRCS---------TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
N K++R + + +F+GN+ + L + +G + +
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGE-CSDARV 125
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP---NFKL-------------GTNAPT 258
+ D ++ ++GF F+ + + AE + +M +K+ G + T
Sbjct: 126 MWD-HSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDT 184
Query: 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
V ADP N + VYV NLP V ++ L+ F +G IT + KP K
Sbjct: 185 VDRADPANTN---------VYVGNLPTEVMEEDLRAAFGAYGEITGL-----KPCH-KGG 229
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV + + S+A++A+ EL G+ ++CS +
Sbjct: 230 YGFVTYRDHSAAVQAIVGMNGKELKGKMVKCSWGR 264
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +++G + D ++ L Q +GE ++ R+M + +KGF FV+FR E A KA+
Sbjct: 94 SHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALA 153
Query: 162 KLNNTEFKGKKIRCSTSQ-------------------AKYRLFIGNIPRNWGSEDLQKVV 202
+++ + KIRC + A +++GN+P EDL+
Sbjct: 154 EMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEEDLRAAF 213
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251
G +TG++ + G+ F+ Y +H A + M K
Sbjct: 214 GAYGE-ITGLK-------PCHKGGYGFVTYRDHSAAVQAIVGMNGKELK 254
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+G +P + E DLR + GE+T G G+ FVT+R+ A +
Sbjct: 190 PANTNVYVGNLPTEVMEEDLRAAFGAYGEIT------GLKPCHKGGYGFVTYRDHSAAVQ 243
Query: 159 AIDKLNNTEFKGKKIRCS 176
AI +N E KGK ++CS
Sbjct: 244 AIVGMNGKELKGKMVKCS 261
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 225
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL VT ++ ++LFE +G IT + + GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A+++ E GQ L A+
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQ 312
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 81 QIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS 140
I +D + K E+ A + + VY+ + + + + R+ + GE+T + + ++
Sbjct: 217 HIAKKDRQSKFEEMKA---NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETG 273
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F N + A+ A++ LN+ E+KG+K+ +Q K+
Sbjct: 274 KSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + +RGF F+ + NH A + + + + +K V A ++
Sbjct: 262 TSASLSRD-NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYK--GQKLYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 319 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 53/135 (39%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK------------------------ 135
G +Y+ + D + LRD G +T R+M+
Sbjct: 337 QGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENV 396
Query: 136 ---------GKDSSE--------------------NKGFAFVTFRNVELASKAIDKLNNT 166
G+DS+E +KGF FV F N + ASKA+ ++N
Sbjct: 397 KEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQR 456
Query: 167 EFKGKKIRCSTSQAK 181
GK + + +Q K
Sbjct: 457 MVNGKPLYVALAQRK 471
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 21/279 (7%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A + +Y+G + D +E L ++G V +RI + + + G+A+V F +
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVG 206
A KA+D +N KGK IR SQ A R +FI N+ R+ ++ L + S G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ K M + +RG+AF+ + N A+ + ++M K +
Sbjct: 123 KILSS----KVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLK---DCRLFVGRFKSR 175
Query: 267 VDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
D Q KA VY+KN + ++L ++F +G+ V V G+ K GF
Sbjct: 176 KDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKG-FGF 234
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
V F +A +A++ +++GQ L A+ +A++++
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDHGSRGYAFVHFQNQIAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N FK +K R + Q K F +N+G E L +V S+ G +
Sbjct: 158 NGALLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L++ F G I++V V + G+ K
Sbjct: 274 ELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ-EEGRSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
G + F+ A KA+ L + L +LA+
Sbjct: 333 G-FGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQK 369
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 18/275 (6%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A P + +Y+G + ++ L + G+V VR+ + +S + G+A+V F N
Sbjct: 30 VAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPM 89
Query: 155 LASKAIDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A++A++ LN K IR S +FI N+ + ++ L S G
Sbjct: 90 DAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG 149
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ DM S +GF F++Y E+++ M + N L + P R
Sbjct: 150 AILSCKVATDDMGQS---KGFGFVQYEKE---EFAQSAMKSLNGMLINDKPVYVGPFLRK 203
Query: 267 V---DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
+S ++ V+VKNL + T++ L K+F +G IT VV G+ + GF++
Sbjct: 204 QERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRC-FGFIN 262
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
F A++A++ +++ + C A+ ++++
Sbjct: 263 FESPDDAVRAVEELNGKKINDKEWYCGRAQKKSER 297
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 136/335 (40%), Gaps = 45/335 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ D ++KGF FV + E A A+
Sbjct: 125 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAT-DDMGQSKGFGFVQYEKEEFAQSAMK 183
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN K + S +A++ +F+ N+ + EDL K+ SE G
Sbjct: 184 SLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNIT 243
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLG-TNAPTVSWAD 263
+ V +V +R F FI + + A E + +K+ + + G + D
Sbjct: 244 SAVVMVG---TDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMD 300
Query: 264 PRNV------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ D++ Q + +Y+KNL ++ DQL++LF G+IT V + G K
Sbjct: 301 LKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKG 360
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPS 370
GFV F+ R A +A+ L G+ L + A+ + ++K S V PS
Sbjct: 361 S-GFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITPS 419
Query: 371 L---LQNYPP------HIGYGLAGGTYGALGAGFG 396
+ L YPP + YG A GFG
Sbjct: 420 MTPRLPMYPPMAPLGQQLFYGQAPPPMMPPQPGFG 454
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 24/266 (9%)
Query: 99 PHGSE----VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
PH S +Y+G + +E L + +IG V +R+ + + + G+++V + N
Sbjct: 46 PHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTA 105
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVG 206
+A+++LN T KG+ R SQ + +FI N+ ++ L + G
Sbjct: 106 DGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 165
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPR 265
+ ++ +D SN+RG+ F+ Y + AE + + + N L V P+
Sbjct: 166 -NILSCKVAQD--EFSNSRGYGFVHY---ETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 219
Query: 266 NVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
S ++KA VYVKN+ VT ++ + +FE++G IT + + G + GF
Sbjct: 220 KDRQSKFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRG-FGF 278
Query: 322 VHFAERSSAMKALKNTEKYELDGQAL 347
V+F E A KA++ + EL GQ L
Sbjct: 279 VNFQEHQHAAKAVEELHESELKGQTL 304
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +RI + + + + G+A+V F + A KA+D
Sbjct: 136 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 195
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 196 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSS-- 253
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K + + ++ ++ S
Sbjct: 254 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGRLLK-SCKVFVGRFKNRKDREAELRS 310
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 311 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKG-FGFVSFDSHEAA 369
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 370 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 399
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 33/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 283
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + ++K F +N+G E L+ V S+ G +
Sbjct: 284 NGRLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 343
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAP 257
+ V+++ D + S +GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 344 S-VKVMTDSRGKS--KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 400
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ + Q +YVKNL + ++L+ F G I +V V + GQ K
Sbjct: 401 LKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKG 459
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GF+ F+ A KA+ L + + +LA+
Sbjct: 460 -FGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQ 494
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 31/202 (15%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
++ K + AEL + + +YI D + L+D G+ V++M ++KG
Sbjct: 299 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSRGKSKG 357
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F + E A KA++++N + G+ I +Q K
Sbjct: 358 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 417
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+L++ N+ E L+ S G + VK M+ ++GF FI + + + A
Sbjct: 418 GVKLYVKNLDDTIDDEKLRNEFSSFGSIIR----VKVMQQEGQSKGFGFICFSSLEDATK 473
Query: 241 SRQKMTNPNFKLGTNAPTVSWA 262
+ +M N F LG+ +++ A
Sbjct: 474 AMIEM-NGRF-LGSKPISIALA 493
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++Y+ + + LR+ S G + V++M+ ++KGF F+ F ++E A+KA
Sbjct: 417 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKA 474
Query: 160 IDKLNNTEFKGKKIRCSTSQA 180
+ ++N K I + +Q+
Sbjct: 475 MIEMNGRFLGSKPISIALAQS 495
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 224
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + D+ +K+FE G IT + + G+ + GFV+F+
Sbjct: 225 SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 283
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 284 THESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ ++ +K+ + G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 262 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L++LF +G IT V
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + + + R + GE+T + + ++ +
Sbjct: 218 ISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GK 273
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 274 SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 314
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D +N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 161 SCKVAQD--EFANSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 215
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ +T D+ + +FE G IT + + G+ + GFV++A
Sbjct: 216 SKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRG-FGFVNYA 274
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ + E+ Q L A+
Sbjct: 275 NHESAEAAVAEMNEKEVKSQKLYVGRAQ 302
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + L D + G + ++ + + + +KG+ FV + E A+ AI +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQ-DEFANSKGYGFVHYETAEAANNAIKHV 193
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++ + + G +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGE-I 252
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L D S RGF F+ Y NH+ AE + +M K + V A ++
Sbjct: 253 TSATLSHDQDGKS--RGFGFVNYANHESAEAAVAEMNEKEVK--SQKLYVGRAQKKHERE 308
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L+ LF +G IT V
Sbjct: 309 EELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKV 360
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I + ++ + R ++ GE+T + +D +
Sbjct: 209 ISKKDRQSKFEEMKA---NFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQD-GK 264
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + N E A A+ ++N E K +K+ +Q K+
Sbjct: 265 SRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKH 305
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 167 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 221
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ +VT+++ +K+FE G IT + G+ + GFV+++
Sbjct: 222 SKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRG-FGFVNYS 280
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ Q L A+
Sbjct: 281 THESAQAAVDEMHDKEVKTQKLYVGRAQ 308
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-I 258
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ Y H+ A+ + +M + K T V A ++
Sbjct: 259 TSATLSRDPEGKS--RGFGFVNYSTHESAQAAVDEMHDKEVK--TQKLYVGRAQKKHERE 314
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 315 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I D +E + R + GE+T + + + +
Sbjct: 215 ISKKDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GK 270
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + E A A+D++++ E K +K+ +Q K+
Sbjct: 271 SRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKH 311
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 14/239 (5%)
Query: 105 YIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164
+ G + D D+ + G + +R++ S+ ++GF +V F +E + +ID LN
Sbjct: 1 FFGNVLRDVMLEDIIPLFEDCGSIWSLRLVMDPLSTLSRGFGYVNFTTMEAVAVSIDLLN 60
Query: 165 NTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNN 224
K + L+IGNIP++ +D++ S V G+ V +
Sbjct: 61 GLILKETGAMQVNANVPNCLYIGNIPKSKDKDDIKTEFSIVSGGILNVI----SAETKLI 116
Query: 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLP 284
GF +EY + + A +++Q++ N K+ + V WADP ++ +K ++V +
Sbjct: 117 WGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPN--EAKKHKIIKVLHVGIIS 174
Query: 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
+ + +++K+LF HG P + ++ FVH R A KA+++ +D
Sbjct: 175 KRSSMERIKELFGEHG--------PIQLVEKFADYAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 39/279 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + + E+ + GEV V+I++ K +S+ +G+ F+ + A + +
Sbjct: 52 LWIGDLQYWMDENYIASCFAHTGEVASVKIIRNKQTSQIEGYGFIEMTSHGAAERILQTY 111
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN F G R + + +F+G++ + LQ+ P V
Sbjct: 112 NGTPMPNGEQNFRLNWASFSGGDKRDDSP--DFTIFVGDLAADVTDFMLQETFRAHFPSV 169
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM---------------TNPNFKLGT 254
G ++V D + + +G+ F+ + + + +M +N +G
Sbjct: 170 KGAKVVID-RLTGRTKGYGFVRFGDESEQLRAMTEMNGAFCSTRPMRVGLASNKKAVVGQ 228
Query: 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
P S+ +P+ + G ++V NL NV D LK+LF +G++ V +P K
Sbjct: 229 QYPKASYQNPQ-PQNDGDPNNTTIFVGNLDSNVMDDHLKELFGQYGQLLHVKIPAGK--- 284
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
R GFV FA+RSSA +ALK +L GQ + S +
Sbjct: 285 ---RCGFVQFADRSSAEEALKMLNGAQLSGQNIRLSWGR 320
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 20/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V F N + A++A+D
Sbjct: 28 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 87
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T + IR S + +FI N+ R + L S G + +
Sbjct: 88 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG-NILSCK 146
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F+++ N + A+ + +K+ L V + S A
Sbjct: 147 VATD--SSGQSKGYGFVQFDNEESAQKAIEKLN--GMLLNDKQVYVGPFLRKQERESTAD 202
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K V+VKNL + T D+LK +F G IT VV + G K++ GFV+F A
Sbjct: 203 KAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVV--MRDGDGKSKCFGFVNFENADDA 260
Query: 331 MKALK--NTEKYE 341
+A++ N +K++
Sbjct: 261 ARAVEALNGKKFD 273
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + G+A+V F +V A KA+D
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L + S G ++
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSS-- 320
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV-----SWADPRNVD 268
K M + ++G+AF+ + N A+ + ++M N L N S D +
Sbjct: 321 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEM---NGTLLKNCRVFVSRFKSRKDRESEL 375
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ AS+ VY+KN ++ +LK++F +G V V G+ K GFV FA
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKG-FGFVSFASHE 434
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+A A++ +++GQ + A+ + ++++
Sbjct: 435 AAKNAVEEMNGKDINGQLIFVGRAQKKIERQA 466
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 41/288 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 350
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N T FK +K R S + K F +N+G + L++V S+ G +
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTL 410
Query: 210 TGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 411 S----VKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQA 466
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + + +Y+KNL + ++L+K F G I++V V QE+
Sbjct: 467 ELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVM-----QEE 521
Query: 317 NR---IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSA 361
R G + F+ A+KA+ L + L +LA+ ++K+
Sbjct: 522 GRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKTC 569
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 17/277 (6%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A + +Y+G + D +E L + G V +RI + + + + G+A+V F +
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLT 62
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVG 206
A KA+D +N KGK IR SQ A R +FI N+ ++ ++ L + S G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFG 122
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ K M + ++G+AF+ + N A+ + ++M K + + ++
Sbjct: 123 KILSS----KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-SCKVFVGRFKNRKD 177
Query: 267 VDS---SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
++ S AS+ +Y+KN ++ ++LK +F +G+ V V G+ K GFV
Sbjct: 178 REAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVS 236
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
F +A KA++ +++GQ + A+ + ++++
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + ++K F +N+G E L+ V S+ G +
Sbjct: 158 NGKLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +YVKNL + ++L+ F G I +V V + GQ K
Sbjct: 274 ELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
GF+ F+ A KA+ L + + +LA+
Sbjct: 333 G-FGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQS 369
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 33/203 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ K + AEL + + +YI D + L+D G+ V++M DSS ++K
Sbjct: 173 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM--TDSSGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ I +Q K
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGY 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L++ N+ E L+ S G + VK M+ ++GF FI + + + A
Sbjct: 291 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIR----VKVMQQEGQSKGFGFICFSSLEDAT 346
Query: 240 YSRQKMTNPNFKLGTNAPTVSWA 262
+ +M N F LG+ +++ A
Sbjct: 347 KAMIEM-NGCF-LGSKPISIALA 367
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++Y+ + + LR+ S G + V++M+ ++KGF F+ F ++E A+KA
Sbjct: 291 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKA 348
Query: 160 IDKLNNTEFKGKKIRCSTSQA 180
+ ++N K I + +Q+
Sbjct: 349 MIEMNGCFLGSKPISIALAQS 369
>gi|357149687|ref|XP_003575198.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 32/304 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
+++G + + E+ L GEV +++++ + S ++G+ FV F + A KA+
Sbjct: 101 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRHSGVSEGYGFVEFYSHASAEKALQNF 160
Query: 163 ----LNNTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
+ NT+ K S S + R +F+G++ + + L ++ + V
Sbjct: 161 AGHVMPNTDRAFKLNWASYSVGEKRSELASDHSIFVGDLAVDVTDDMLMELFANKYRSVK 220
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWAD-- 263
G +++ D N+ +RG+ F+ + H E + + ++G P + D
Sbjct: 221 GAKVIID-ANTGRSRGYGFVRFGDDNDRTHAMTEMNGVYCSTRPIRIGPATPRRTSGDSG 279
Query: 264 ---PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
PR D G + VYV L NV++D+L+K F +G + V +P K + G
Sbjct: 280 SSPPRQSD--GDLTNRTVYVGGLDPNVSEDELRKTFAKYGDVASVKIPVGK------QCG 331
Query: 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIG 380
FV F R+ A +AL+ + QA+ S + A ++ G S + + P + G
Sbjct: 332 FVQFVNRADAEEALQALSGSTIGKQAVRLSWGRSPASKQPRGDSGHRRNGMYYGTPFYGG 391
Query: 381 YGLA 384
YG A
Sbjct: 392 YGYA 395
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 16/270 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L D Q+ G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ R+ ++ L S G + +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSG 271
+V D+ S +GF F+ Y + + A+ + +K+ K A S D
Sbjct: 121 VVCDINGS---KGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDA 177
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A ++VKNLP + D L K FE G ++ V+ G K GF+ F E A
Sbjct: 178 AKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCH-GFISFKEHDQA 236
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
A++ + E++G+ L C A+ +A++ S
Sbjct: 237 EAAVEIMHEKEIEGKKLYCGRAQKKAERSS 266
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 124/332 (37%), Gaps = 84/332 (25%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D S G + +++ D + +KGF FV + + E A +AI+K+
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVC--DINGSKGFGFVHYESDESAQRAIEKV 149
Query: 164 NNTEFKGKKI---RCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N + KK+ R + + R LF+ N+P +W ++ L K + G V
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVV 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
+ + + S GF I + H AE + + M + G + +
Sbjct: 210 SHKVICDETTGLSKCHGF--ISFKEHDQAEAAVEIMHEKEIE-GKKL----YCGRAQKKA 262
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVP-- 308
+S++KA +YVKNL ++ + L++ F+ G IT KV+
Sbjct: 263 ERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLN 322
Query: 309 -------------------------------------PAKPGQEKNR---IGFVHFAERS 328
P KP +K R GFV F+
Sbjct: 323 EKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPE 382
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ G+ L LA+ + D+K+
Sbjct: 383 EATKAVTEMNGRIFGGKPLYVGLAQRKEDRKA 414
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 139/333 (41%), Gaps = 62/333 (18%)
Query: 51 EEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIP 110
+EE ++ E+ V EE E +E Q ++E+E LPP +++Y+G +P
Sbjct: 61 QEETQITEQSVPEEEETNKER---------QPKNEEE---------LPPRRTKLYVGNLP 102
Query: 111 HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170
L Q G V V +++ +++ ++GFAFVT V+ A AI+KL ++ G
Sbjct: 103 RSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSDLGG 162
Query: 171 KKIRC---------------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
+ + S + Y+LF+GN+ + E L+ + S+ G V+ +++
Sbjct: 163 RDMIVNFPAKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHG-NVSAAKVI 221
Query: 216 KDMKNSSNNRGFAFIEYHNHK-----CAEYSRQKMTNPNFKLGTNAPTV----------S 260
K R F F+ + ++ N K+ PT +
Sbjct: 222 YSGKGGV-PRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEEN 280
Query: 261 WADPRN-VDSSGASQVKA--------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
A P V+ S VKA VYV NL +V L +LF HG + V A+
Sbjct: 281 IAKPSTMVEDSMTETVKATFVGSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYAR 340
Query: 312 PGQEKNRIGFVHF---AERSSAMKALKNTEKYE 341
GFV+F AE +A+ AL E YE
Sbjct: 341 KAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYE 373
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
+ +L++GN+PR+ L ++ E G V VE+V++ + + +RGFAF+ K A+
Sbjct: 93 RTKLYVGNLPRSCDIAQLTQLFQEFGT-VESVEVVRN-EETGISRGFAFVTMSTVKEAKS 150
Query: 241 SRQKMTNPNF---KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE 297
+ +K+ + + N P + + D S ++V NL +V ++ LK LF
Sbjct: 151 AIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSLFS 210
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356
HG ++ V + G GFV + +S A+ + E G+ L+ A+P +
Sbjct: 211 QHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTS 269
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 127/277 (45%), Gaps = 25/277 (9%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV---E 154
P S +Y+G + D +E L + S+G V +R+ + + + G+A+V + + +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A +A++ LN GK +R S +FI N+ + ++ L S G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWAD- 263
+ ++ D S +G+ F+ + + A+ + Q + K+ P AD
Sbjct: 139 -KILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADR 195
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
P++V ++ V+VKNLP ++ D+L K+ HG IT VV G K GF++
Sbjct: 196 PQDVYTN-------VFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG-FGFIN 247
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
F + SA K ++ + E+ G+ L A+ + ++++
Sbjct: 248 FKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREA 284
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ ++ + +KG+ FV F + A +AI +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGV-SKGYGFVHFEDQAAADRAIQTV 174
Query: 164 NNTEFKGKKI-------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N E +GK + R Q Y +F+ N+P + G ++L K+ +E G +T ++
Sbjct: 175 NQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHGE-ITSAVVM 233
Query: 216 KDMKNSSNNRGFAFIEYHNH----KCAEYSRQK-MTNPNFKLGT-------NAPTVSWAD 263
KD K S +GF FI + + KC EY ++ M+ G A A+
Sbjct: 234 KDDKGGS--KGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 291
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
+ Q +YVKNL V D L++LF + G IT V G+ K GFV
Sbjct: 292 ESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKG-FGFVC 350
Query: 324 FAERSSAMKALKNTEKYELDGQALECSLAK 353
F A +A+ + G+ L +LA+
Sbjct: 351 FTSHDEATRAVTEMNGKMVKGKPLYVALAQ 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Query: 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
ST A L++G++ ++ L ++ S VGP V + + +D + + G+A++ Y++
Sbjct: 16 ASTPLANSSLYVGDLEKDVTEAQLFELFSSVGP-VASIRVCRDAV-TRRSLGYAYVNYNS 73
Query: 235 HKCAEYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQ 291
+ + + M N+ + P + W+ DP S+ S V +++KNL + +
Sbjct: 74 ALDPQAADRAMETLNYHVVNGKPMRIMWSHRDP----SARKSGVGNIFIKNLDKTIDAKA 129
Query: 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351
L F G+I V G K GFVHF ++++A +A++ + E++G+ +
Sbjct: 130 LHDTFSAFGKILSCKVATDANGVSKG-YGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGP 188
Query: 352 AKPQADQ 358
+ +AD+
Sbjct: 189 FQKRADR 195
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ +P D + +L GE+T +MK D +KGF F+ F++ E A+K ++
Sbjct: 201 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVE 259
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN E GK + +Q K L++ N+ +
Sbjct: 260 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDA 319
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
L+++ + G +T +++KD S ++GF F+ + +H
Sbjct: 320 LRELFANSG-TITSCKVMKD--GSGKSKGFGFVCFTSH 354
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + + + LR+ + G +T ++MK S ++KGF FV F + + A++A+
Sbjct: 303 GMNLYVKNLSDEVDDDALRELFANSGTITSCKVMK-DGSGKSKGFGFVCFTSHDEATRAV 361
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N KGK + + +Q K
Sbjct: 362 TEMNGKMVKGKPLYVALAQRK 382
>gi|226495169|ref|NP_001150649.1| nucleic acid binding protein [Zea mays]
gi|195640856|gb|ACG39896.1| nucleic acid binding protein [Zea mays]
Length = 420
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 29/302 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L + GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 101 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 160
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NT+ K S S + R +F+G++ + E L ++ S V
Sbjct: 161 TGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVK 220
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +++ D N+ +RG+ F+ + +H +E + + ++G P S D
Sbjct: 221 GAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSG 279
Query: 266 NVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
+ S G S + VYV L NV++D+L+K F + + V +P K + GFV
Sbjct: 280 SSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DLASVKIPLGK------QCGFV 332
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
F R+ A +AL+ + QA+ S + + ++S G SV+ + ++ P + GYG
Sbjct: 333 QFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRRNNMYYGTPFYGGYG 392
Query: 383 LA 384
A
Sbjct: 393 YA 394
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 22/273 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V + N +A++
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + KG+ R SQ + +FI N+ ++ L + G V +
Sbjct: 104 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCK 162
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---- 269
+ D S +G+ F+ Y + AE + + + L V R S
Sbjct: 163 VATDEHGRS--KGYGFVHYETAEAAETAIKAVNG--MLLNDKKVYVGHHISRKASSRERQ 218
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKNL VTQD KLFE G +T V+ + GQ + GFV+F
Sbjct: 219 SKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRG-FGFVNFE 277
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA++ E G+ L S A+ +A++
Sbjct: 278 THEEAQKAVETLHDSEYHGRKLFVSRAQKKAER 310
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 45/285 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETAEAAETAIKAV 192
Query: 164 NNTEFKGKKI--------RCSTSQAKYRL----------FIGNIPRNWGSEDLQKVVSEV 205
N KK+ + S+ + + +L ++ N+ +D K+ +
Sbjct: 193 NGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQF 252
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWA 262
G VT + D + S RGF F+ + H+ A+ + + + + + KL VS A
Sbjct: 253 G-NVTSAVIQTDEQGQS--RGFGFVNFETHEEAQKAVETLHDSEYHGRKL-----FVSRA 304
Query: 263 DPR--------------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308
+ V+ Q +Y+KNL ++ ++L++ FE G IT V
Sbjct: 305 QKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVM 364
Query: 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ G K GFV F+ A KA+ + + L SLA+
Sbjct: 365 RDEKGTSKG-FGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 408
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI + D + LR + G +T ++M+ + + +KGF FV F + + A+KA
Sbjct: 330 QGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKGT-SKGFGFVCFSSPDEATKA 388
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++NN K + S +Q +
Sbjct: 389 VAEMNNKMIGSKPLYVSLAQRR 410
>gi|322800628|gb|EFZ21595.1| hypothetical protein SINV_12441 [Solenopsis invicta]
Length = 265
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M S N+G+AF+TF N E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDL 198
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEI 257
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 36/308 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L GEV +++++ + S ++G+ FV F + A KA+
Sbjct: 111 IWVGDLQYWMDENYLHSCFGPSGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQNF 170
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
+ NT+ K S S + R +F+G++ + E L ++ S V
Sbjct: 171 SGHVMPNTDRAFKLNWASYSMGEKRTELSSDHSIFVGDLAVDVTDEMLLELFSNKYRSVK 230
Query: 211 GVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWAD-- 263
G +++ D N+ +RG+ F+ + + H E + + ++G P S D
Sbjct: 231 GAKVIID-ANTGRSRGYGFVRFGDDNDKTHAMTEMNGVYCSTRPIRVGPATPRRSQGDSG 289
Query: 264 ---PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320
PR D S + VYV L NV++D+L+K F +G + V +P K + G
Sbjct: 290 SSPPRQSDVD--STNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGK------QCG 341
Query: 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEK----PSLLQNYP 376
FV F R+ A +AL+ + QA+ S + A ++S G S + + P
Sbjct: 342 FVQFVNRADAEEALQGLNGATIGKQAVRLSWGRSPASKQSRGDSGHRRNGNGNGMYYGTP 401
Query: 377 PHIGYGLA 384
+ GYG A
Sbjct: 402 FYSGYGYA 409
>gi|194703366|gb|ACF85767.1| unknown [Zea mays]
Length = 420
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 29/302 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L + GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 101 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 160
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NT+ K S S + R +F+G++ + E L ++ S V
Sbjct: 161 TGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVK 220
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +++ D N+ +RG+ F+ + +H +E + + ++G P S D
Sbjct: 221 GAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSG 279
Query: 266 NVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
+ S G S + VYV L NV++D+L+K F + + V +P K + GFV
Sbjct: 280 SSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DLASVKIPLGK------QCGFV 332
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
F R+ A +AL+ + QA+ S + + ++S G SV+ + ++ P + GYG
Sbjct: 333 QFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRRNNMYYGTPFYGGYG 392
Query: 383 LA 384
A
Sbjct: 393 YA 394
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 53 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 112
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 113 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-NIL 171
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 172 SCKVAQD--EHGNSKGYGFVHYETAEAANSAIKSVN--GMLLNEKKVFVGHHIPKKDRMS 227
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ T D+ + LFE +G IT + + G+ + GFV++
Sbjct: 228 KFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRG-FGFVNYIR 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
A KA++ + GQAL A+
Sbjct: 287 HEDANKAVEELNNSDFKGQALYVGRAQ 313
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETAEAANSAIKSV 204
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI ++ + + + G +
Sbjct: 205 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYG-DI 263
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L D + S RGF F+ Y H+ A + +++ N +FK A V A ++
Sbjct: 264 TSASLAHDQEGKS--RGFGFVNYIRHEDANKAVEELNNSDFK--GQALYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ S Q +YVKNL + D+L+K+FE +G IT V
Sbjct: 320 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSAKV 371
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I +A++ + R + G++T + ++ +++GF FV + E A+KA++
Sbjct: 237 TNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE-GKSRGFGFVNYIRHEDANKAVE 295
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
+LNN++FKG+ + +Q K+
Sbjct: 296 ELNNSDFKGQALYVGRAQKKH 316
>gi|293337265|ref|NP_001168324.1| uncharacterized protein LOC100382091 [Zea mays]
gi|223947441|gb|ACN27804.1| unknown [Zea mays]
gi|223947469|gb|ACN27818.1| unknown [Zea mays]
gi|413933766|gb|AFW68317.1| hypothetical protein ZEAMMB73_975236, partial [Zea mays]
Length = 406
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 41/287 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GEV V+I++ K + + +G+ F+ F N +A + +
Sbjct: 72 LWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFSNHAVAEQVLQNY 131
Query: 164 N-------NTEFKGKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVSEVGP 207
N N F K+ +TS A Y +F+G++ + LQ P
Sbjct: 132 NGQMMPNVNQPF---KLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYP 188
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLG-------TN 255
V G ++V D + + ++G+ F+++ E + Q ++ +LG T
Sbjct: 189 SVKGAKVVFD-RTTGRSKGYGFVKFADSDEQTRAMTEMNGQYCSSRAMRLGPASNKKNTG 247
Query: 256 APTVS---WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
P S + + + DS V+V L +VT + LK+ F +G + V +P K
Sbjct: 248 GPQPSSAIYQNTQGTDSDSDPNNTTVFVGGLDPSVTDELLKQTFSPYGELLYVKIPVGK- 306
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
R GFV ++ R+SA +A++ +L GQ++ S + A+++
Sbjct: 307 -----RCGFVQYSNRASAEEAIRVLNGSQLGGQSIRLSWGRSPANKQ 348
>gi|195620484|gb|ACG32072.1| nucleic acid binding protein [Zea mays]
gi|195625400|gb|ACG34530.1| nucleic acid binding protein [Zea mays]
Length = 369
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 29/302 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L + GEV +++++ + + +++G+ FV F + A KA+
Sbjct: 50 IWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNF 109
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NT+ K S S + R +F+G++ + E L ++ S V
Sbjct: 110 TGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVK 169
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +++ D N+ +RG+ F+ + +H +E + + ++G P S D
Sbjct: 170 GAKVIID-ANTGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSG 228
Query: 266 NVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
+ S G S + VYV L NV++D+L+K F + + V +P K + GFV
Sbjct: 229 SSTPGHSDGDSSNRTVYVGGLDPNVSEDELRKAFAKY-DLASVKIPLGK------QCGFV 281
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYG 382
F R+ A +AL+ + QA+ S + + ++S G SV+ + ++ P + GYG
Sbjct: 282 QFVSRTDAEEALQGLNGSLIGKQAVRLSWVRSPSHKQSRGDSVNRRNNMYYGTPFYGGYG 341
Query: 383 LA 384
A
Sbjct: 342 YA 343
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V + + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGE 119
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V + P+
Sbjct: 179 LSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 234
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHF 324
S ++KA VYVKN+ VT+++ ++LF +G +T + A+ + K+R GFV+F
Sbjct: 235 SKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSL--ARDNEGKSRGFGFVNF 292
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAK 353
+SA KA++ E GQ L A+
Sbjct: 293 TTHASAAKAVEELNGKEFRGQELYVGRAQ 321
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I H+ +E + R+ GEVT + + + +
Sbjct: 228 IPKKDRQSKFEEMKA---NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLAR-DNEGK 283
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F A+KA+++LN EF+G+++ +Q K+
Sbjct: 284 SRGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKAN 343
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + + L+++ SE GP +T ++++D
Sbjct: 344 KYQGVNLYIKNLADDVDDDKLRQMFSEFGP-ITSAKVMRD 382
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 123/313 (39%), Gaps = 76/313 (24%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L D + G + ++ + ++ +KG+ FV + E A++AI +N KK+
Sbjct: 168 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGY 226
Query: 178 ------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI E+ +++ ++ G VT L +D N
Sbjct: 227 HIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGE-VTSSSLARD--NEGK 283
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
+RGF F+ + H A + +++ F+ V A ++ ++
Sbjct: 284 SRGFGFVNFTTHASAAKAVEELNGKEFR--GQELYVGRAQKKHEREEELRKSYEAARLEK 341
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV----PPAKP-GQEKNR------ 318
+ Q +Y+KNL +V D+L+++F G IT V PP P G E ++
Sbjct: 342 ANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKE 401
Query: 319 -------------------------------IGFVHFAERSSAMKALKNTEKYELDGQAL 347
GFV F+ A KA+ + +DG+ L
Sbjct: 402 NKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPL 461
Query: 348 ECSLAKPQADQKS 360
+LA+ + +KS
Sbjct: 462 YVALAQRKDVRKS 474
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
Q+ L++G + + L ++ S++G V + + +D + + G+A++ Y++ +
Sbjct: 61 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAV-TRRSLGYAYVNYNSTQDG 118
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L P + W+ DP + +G V ++KNL + L
Sbjct: 119 EKALEEL---NYTLIKGRPCRIMWSQRDPA-LRKTGQGNV---FIKNLDVAIDNKALHDT 171
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 172 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 230
Query: 356 ADQKS 360
D++S
Sbjct: 231 KDRQS 235
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 16/268 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + S+ L+ IG V R+ + + ++ G+ +V F + + A +A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN G+ IR SQ K +FI N+ ++ ++L S G + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCK 131
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D + ++G+ F+ + +CAE + +K+ N + V P+ S A
Sbjct: 132 IVMD--ENGQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+VK +YVKN P ++LK++F G I V G+ K GFV + + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG-FGFVCYLDPDHAE 246
Query: 332 KALKNTEKYELDGQALECSLAKPQADQK 359
A++ E++G+ L C+ A+ + +++
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ LQ SE+GP V + +D+ + + G+ ++ + + K AE Q
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRQSLGYGYVNFEDPKHAE---Q 69
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ N++ P + W+ DP ++ SG + ++KNL +++ Q +L F G
Sbjct: 70 ALEVLNYEPLMGRPIRIMWSQRDP-SLRKSGKGNI---FIKNLDKSIEQKELYDTFSFFG 125
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
RI + + GQ K GFVHF + A +A++ + + + P+ ++KS
Sbjct: 126 RILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
Query: 361 AGGSVSEKPSLLQNYPP 377
V ++N+PP
Sbjct: 185 QARKVKFNNLYVKNFPP 201
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 225
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T ++ ++LFE G IT + + GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTS 285
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ N + + Q L A+
Sbjct: 286 HESAAAAVDNLNEKDFKSQKLYVGRAQ 312
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D ++ + R+ + GE+T + + +S +
Sbjct: 218 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGK 274
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E A+ A+D LN +FK +K+ +Q K+
Sbjct: 275 SRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKH 315
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ +++ + G +
Sbjct: 203 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H+ A + + +FK + V A ++
Sbjct: 262 TSATLARDSE-SGKSRGFGFVNFTSHESAAAAVDNLNEKDFK--SQKLYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L+ LF +G IT V
Sbjct: 319 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKV 370
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V F N + A++A+D
Sbjct: 31 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 90
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T + IR S + +FI N+ R + L S G + +
Sbjct: 91 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG-NILSCK 149
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F+++ N + A+ + +K+ L V + S A
Sbjct: 150 VATD--SSGQSKGYGFVQFDNEESAQKAIEKLN--GMLLNDKQVYVGPFLRKQERESAAD 205
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K V+VKNL + T D+LK F G IT VV + G K++ GFV+F A
Sbjct: 206 KAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVV--MRDGDGKSKCFGFVNFENADDA 263
Query: 331 MKAL 334
+A+
Sbjct: 264 ARAV 267
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL V+ ++ ++LFE +G IT + + GFV+F +
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVK 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E GQ L A+
Sbjct: 287 HESAAAAVEELNDKEYKGQKLYVGRAQ 313
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ + + S + R+ + GE+T I + ++ +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A+ A+++LN+ E+KG+K+ +Q K+
Sbjct: 276 SRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKH 316
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + + +RGF F+ + H+ A + +++ + +K V A ++
Sbjct: 263 TSASISRDGE-TGKSRGFGFVNFVKHESAAAAVEELNDKEYK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARV 371
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 23/274 (8%)
Query: 96 ALPPH---GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN 152
A P H + +Y+G + +E L + SIG+V +R+ + + + G+A+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 153 VELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSE 204
E KA+++LN T KGK R SQ + +FI N+ ++ L +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G + ++ +D N++G+ F+ Y + A + + + L V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIP 213
Query: 265 RNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-I 319
+ S ++KA +YVKN+ +V+ ++ ++LFE HG IT + A+ Q K+R
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASI--ARDEQGKSRGF 271
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV++ + +A A+ + GQ L A+
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D S+ + R+ + G++T I + + +++GF FV + E AS A+D
Sbjct: 229 TNIYVKNIDLDVSDEEFRELFEKHGDITSASIAR-DEQGKSRGFGFVNYIKHEAASAAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+T+F+G+K+ +Q K+
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKH 308
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI + E+ +++ + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + +F+ V A ++
Sbjct: 256 TSASIARDEQGKS--RGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 124/268 (46%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V + P+
Sbjct: 174 LSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT D+ ++LFE G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A KA+++ + GQ L A+
Sbjct: 289 THEAAFKAVEDLNGKDFRGQELYVGRAQ 316
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D ++ + R+ + G+VT + + ++
Sbjct: 223 IPKKDRQSKFEEMKA---NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKP 279
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
+GF FV F E A KA++ LN +F+G+++ +Q K+
Sbjct: 280 -RGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKAN 338
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + E L+++ +E GP +T ++++D
Sbjct: 339 KYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 377
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ + +KG+ FV + E A++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHV 207
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI + ++ +++ + G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFG-DV 266
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + RGF F+ + H+ A + + + +F+ V A ++
Sbjct: 267 TSSSLARDQEGKP--RGFGFVNFTTHEAAFKAVEDLNGKDFR--GQELYVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V ++L+++F G IT V
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 374
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 16/270 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L D Q+ G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ + +FI N+ R+ ++ L S G + +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSG 271
+V D+ S +GF F+ Y + + A+ + +K+ K A S D
Sbjct: 121 VVCDINGS---KGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDA 177
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A ++VKNLP + D L K FE G ++ V+ G K GF+ F E A
Sbjct: 178 AKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCH-GFISFKEHDQA 236
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
A++ + E++G+ L C A+ +A++ S
Sbjct: 237 EAAVEIMHEKEIEGKKLYCGRAQKKAERSS 266
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 41/288 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D S G + +++ D + +KGF FV + + E A +AI+K+
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVC--DINGSKGFGFVHYESDESAQRAIEKV 149
Query: 164 NNTEFKGKKI---RCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N + KK+ R + + R LF+ N+P +W ++ L K + G V
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVV 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
+ + + S GF I + H AE + + M + G + +
Sbjct: 210 SHKVICDETTGLSKCHGF--ISFKEHDQAEAAVEIMHEKEIE-GKKL----YCGRAQKKA 262
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+S++KA +YVKNL ++ + L++ F+ G IT V
Sbjct: 263 ERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLN 322
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
G+ K GFV F+ A KA+ G+ L LA+ + D+K+
Sbjct: 323 GRSKG-FGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKA 369
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + LR+ + G +T +++ + +KGF FV F + E A+KA
Sbjct: 284 QGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNG-RSKGFGFVCFSSPEEATKA 342
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N F GK + +Q K
Sbjct: 343 VTEMNGRIFGGKPLYVGLAQRK 364
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL VT ++ ++LF +G IT + + GFV+F +
Sbjct: 227 KFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVK 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E GQ L A+
Sbjct: 287 HESAAAAVEELNDKEFKGQKLYVGRAQ 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ + + + R+ G++T I ++ +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A+ A+++LN+ EFKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYG-DI 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + D + + +RGF F+ + H+ A + +++ + FK V A ++
Sbjct: 263 TSASITHDSE-TGKSRGFGFVNFVKHESAAAAVEELNDKEFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 371
>gi|357163840|ref|XP_003579863.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 428
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 136/303 (44%), Gaps = 30/303 (9%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L GEV +++++ + + + +G+ FV F + A KA+
Sbjct: 106 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQTEGYGFVEFYSHASADKALQNF 165
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NT+ K S S + R +F+G++ + E L ++ + V
Sbjct: 166 TGHAMPNTDRPFKLNWASYSMGEKRSEVVSDHSIFVGDLAADVTDEMLMELFASKYRSVK 225
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM------TNPNFKLGTNAPTVSWADP 264
G +++ D N+ +RG+ F+ + + +M T P ++G P + D
Sbjct: 226 GAKVIID-ANTGRSRGYGFVRFGEDSDKSRAMTEMNGVYCSTRP-IRIGPATPRRTAGDS 283
Query: 265 RNVD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+ S G S + VYV L NV++D+L+K F +G + V +P K + GF
Sbjct: 284 GSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKSFAKYGDVASVKIPQGK------QCGF 337
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGY 381
V + R+ A +AL+ + QA+ S + + ++ G S + + ++ P + GY
Sbjct: 338 VQYVNRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQPRGDSGNRRNNMYYGTPFYGGY 397
Query: 382 GLA 384
G A
Sbjct: 398 GYA 400
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D SS +G+ F+ Y + A+ + + + L V P+
Sbjct: 170 LSCKVAQDETGSS--KGYGFVHYETDEAAQQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 225
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VY+KN+ +VT DQ + LFE HG +T + G+ + GFV+F
Sbjct: 226 SKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRG-FGFVNFT 284
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ + GQ L A+
Sbjct: 285 THEAASAAVEELNNKDFHGQELYVGRAQ 312
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I D ++ R ++ G+VT I + D +
Sbjct: 219 IPKKDRQSKFEEMKA---NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPD-GK 274
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E AS A+++LNN +F G+++ +Q K+
Sbjct: 275 SRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKAS 334
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + E L+ + +E GP +T ++++D
Sbjct: 335 KYQGVNLYIKNLDDDVDDEKLRTMFTEFGP-ITSAKVMRD 373
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + S +KG+ FV + E A +AI +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGS-SKGYGFVHYETDEAAQQAIKHV 203
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ ++I NI + ++D +V+ E V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDV-TDDQFRVLFEAHGDV 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D S RGF F+ + H+ A + +++ N +F V A ++
Sbjct: 263 TSSSIARDPDGKS--RGFGFVNFTTHEAASAAVEELNNKDFH--GQELYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKV 370
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 157 SKAIDKL----NNTEFKGK-KIRCSTS------------------QAKYRLFIGNIPRNW 193
S A+D+L NNT GK + S S Q L++G + +
Sbjct: 7 SAAVDQLTADLNNTSIDGKPSVDTSVSAATGDDAGPTPNSAAPHPQNSASLYVGELDPSV 66
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253
L ++ S++G V + + +D + + G+A++ Y++ E + +++ N+ L
Sbjct: 67 TEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDGEKALEEL---NYTLI 121
Query: 254 TNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
P + W+ DP + +G V ++KNL + L F G I V
Sbjct: 122 KGRPCRIMWSQRDPA-LRKTGQGNV---FIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 177
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ G K GFVH+ +A +A+K+ L+ + + P+ D++S
Sbjct: 178 ETGSSKG-YGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 226
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D +N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 161 SCKVAQD--EFANSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 215
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ +T D+ + +FE G IT + + G+ + GFV++A
Sbjct: 216 SKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRG-FGFVNYA 274
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ + E+ Q L A+
Sbjct: 275 NHESAEAAVAEMNEKEVKTQKLYVGRAQ 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + L D + G + ++ + + + +KG+ FV + E A+ AI +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQ-DEFANSKGYGFVHYETAEAANNAIKHV 193
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++D +V+ E +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEI-TDDEFRVMFEAFGEI 252
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L D S RGF F+ Y NH+ AE + +M K T V A ++
Sbjct: 253 TSATLSHDQDGKS--RGFGFVNYANHESAEAAVAEMNEKEVK--TQKLYVGRAQKKHERE 308
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L+ LF +G IT V
Sbjct: 309 EELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKV 360
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I + ++ + R ++ GE+T + +D +
Sbjct: 209 ISKKDRQSKFEEMKA---NFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQD-GK 264
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + N E A A+ ++N E K +K+ +Q K+
Sbjct: 265 SRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKH 305
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 23/269 (8%)
Query: 99 PHGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
P G+ +Y+G + +E +L + SIG V VR+ + + + + G+ +V F E A
Sbjct: 74 PQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDA 133
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPG 208
A+ +LN + G+ IR + K R +FI +P + S L+ + G
Sbjct: 134 EAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGK- 192
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV- 267
+ + V D +S RGF F+ + + K AE + + N G V+ PR
Sbjct: 193 ILSCKAVLD--HSGRCRGFGFVHFEDPKVAERAIAE-ANGKDAGGDRKLRVAPFKPRKQR 249
Query: 268 ---DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
VYVK+L R+ +++L KLFE +G IT + K + GFV+F
Sbjct: 250 EQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNF 309
Query: 325 AERSSAMKALKNTEKYE-----LDGQALE 348
A+ +A K ++ E ++ +DG A E
Sbjct: 310 ADTEAAQKCVEEGEMHQRDIFYVDGMAFE 338
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +++ + +E DLR F + G V V++M+ K+ ++ F FVTF E A AI
Sbjct: 437 GGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGV-SRCFGFVTFATREEAESAI 495
Query: 161 DKLNNTEFKGKKI 173
K N + + I
Sbjct: 496 AKKNRQPLQDRPI 508
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
++VKN NVT++ L+K FE G + V V K G + GFV FA R A A+
Sbjct: 440 LFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRC-FGFVTFATREEAESAIAKK 498
Query: 338 EKYELDGQALECS--LAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAGF 395
+ L + + + L + + + + YP + G + GA G G+
Sbjct: 499 NRQPLQDRPIYVAFHLTRQERQARKQQQHPQHPQQGMYMYPQYPGMPM-----GAFGPGY 553
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 23/274 (8%)
Query: 96 ALPPH---GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN 152
A P H + +Y+G + +E L + SIG+V +R+ + + + G+A+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 153 VELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSE 204
E KA+++LN T KGK R SQ + +FI N+ ++ L +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G + ++ +D N++G+ F+ Y + A + + + L V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIP 213
Query: 265 RNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-I 319
+ S ++KA +YVKN+ +V+ ++ ++LFE HG IT + A+ Q K+R
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASI--ARDEQGKSRGF 271
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV++ + +A A+ + GQ L A+
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D S+ + R+ + G++T I + + +++GF FV + E AS A+D
Sbjct: 229 TNIYVKNIDLDVSDEEFRELFEKHGDITSASIAR-DEQGKSRGFGFVNYIKHEAASAAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+T+F+G+K+ +Q K+
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKH 308
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI + E+ +++ + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + +F+ V A ++
Sbjct: 256 TSASIARDEQGKS--RGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + + +E L D + ++ +R+ + + + G+A+V F N + AS
Sbjct: 31 PFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDAS 90
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
A++ LN T GK IR SQ +FI N+ + ++ L + G
Sbjct: 91 NAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFG--- 147
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD- 268
T + + +S ++G+ F+++ N + A+ + +++ N L + R +
Sbjct: 148 TVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRL---NGMLINDKQVYVGLFIRRQER 204
Query: 269 --SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++G+ + VYVKNL T + LKKLF +G IT V G+ + GFV+F
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRC-FGFVNFQN 263
Query: 327 RSSAMKAL 334
SA A+
Sbjct: 264 PDSAAAAV 271
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 27/154 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + ++ DL+ G +T +MK + +++ F FV F+N + A+
Sbjct: 211 PKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNG-KSRCFGFVNFQNPDSAAA 269
Query: 159 AIDKLNNTE-------FKGKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A+++LN T + G+ R + +A+ + L++ N+ ++
Sbjct: 270 AVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSF 329
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
E L+ + SE G +T +++ D S GF
Sbjct: 330 SDEKLKDLFSEFGT-ITSCKVMIDSNGRSKGSGF 362
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G+ +Y+ + S+ L+D G +T ++M + +KG FV+F E ASKA
Sbjct: 316 QGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNG-RSKGSGFVSFSTPEEASKA 374
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
++++N K + + +Q K
Sbjct: 375 LNEMNGKLIGRKPLYVAVAQRK 396
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A +A+D
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR S +FI N+ + ++ L S G ++
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-- 191
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
K + N +RGF F+ + H+ A+ + M L V R + G
Sbjct: 192 --KVVYNEHGSRGFGFVHFETHEAAQKAINTMN--GMLLNDRKVFVGHFKSRQKREAELG 247
Query: 272 ASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VYVKNL ++ + L+ LF G++ V V GQ + GFV+F +
Sbjct: 248 ARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRG-FGFVNFEKHEE 306
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ GQ L A+ +A+++S
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQS 337
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + VY+ + D E L+D G++ V++M+ + +++G
Sbjct: 237 KSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSN-GQSRG 295
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+D +N E +G+ + +Q +
Sbjct: 296 FGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQ 355
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L++V S G + K M SS+++GF F+ +
Sbjct: 356 GVNLYVKNLDDSINDERLKEVFSAYGV----ITSAKVMTESSHSKGFGFVCF 403
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 39/286 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D + G + +++ + S +GF FV F E A KAI+ +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGS--RGFGFVHFETHEAAQKAINTM 221
Query: 164 NNTEFKGKKIRCSTSQAKYR--------------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ + +++ N+ + + LQ + S+ G
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGK-- 279
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
++ VK M++S+ +RGF F+ + H+ A+ + M + V A R
Sbjct: 280 --MQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVR--GQLLYVGRAQKRAER 335
Query: 269 SSGAS----QVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
S QVK +YVKNL ++ ++LK++F +G IT V
Sbjct: 336 QSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKV--MTESS 393
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 394 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 439
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + ++ L++ + G +T ++M +SS +KGF FV F + E A+KA+
Sbjct: 356 GVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 413
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 414 TEMNGRIVGTKPLYVALAQRK 434
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGE 119
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NI 178
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V + P+
Sbjct: 179 LSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 234
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ VT+++ ++LF +G +T + + G+ + GFV+F+
Sbjct: 235 SKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRG-FGFVNFS 293
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA++ E GQ L A+
Sbjct: 294 THDSAAKAVEELNGKEFRGQELYVGRAQ 321
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E A++AI +
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 164 NNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI E+ +++ S+ G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGE-V 271
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A + +++ F+ V A ++
Sbjct: 272 TSSTLARDQEGKS--RGFGFVNFSTHDSAAKAVEELNGKEFR--GQELYVGRAQKKHERE 327
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ + Q +Y+KNL ++ D+L+++F G IT V
Sbjct: 328 EELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKV 379
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL VT ++ ++LF +G IT + + GFV+F +
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVK 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E GQ L A+
Sbjct: 287 HESAAAAVEELNDKEFKGQKLYVGRAQ 313
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ + + + + R+ G++T I ++ +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A+ A+++LN+ EFKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYG-DI 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + D + + +RGF F+ + H+ A + +++ + FK V A ++
Sbjct: 263 TSASITHDSE-TGKSRGFGFVNFVKHESAAAAVEELNDKEFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 371
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 16/262 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + S+ L+ IG V R+ + + ++ G+ +V F + + A +A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN G+ IR SQ K +FI N+ ++ ++L S G + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D S +G+ F+ + +CAE + +K+ N + V P+ S A
Sbjct: 132 IVMDENGQS--KGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 274 QVK--AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+VK +YVKN P ++LK++F G I V G+ K GFV + + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG-FGFVCYLDPDHAE 246
Query: 332 KALKNTEKYELDGQALECSLAK 353
A++ E++G+ L C+ A+
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQ 268
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 40/287 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + +L D G + +I+ ++ ++KG+ FV F E A +AI+K+
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVM-DENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 164 NNTEFK------GKKIRCSTSQAKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
NN + GK I + +++ R L++ N P +E L+++ SE G +
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE-IKS 220
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
++KD N ++GF F+ Y + AE + + M + V +
Sbjct: 221 ACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTMHGKEIE-----GRVLYCARAQRKEER 273
Query: 272 ASQVKA------------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
++K +YVKNL N+ +L++ F HG IT V
Sbjct: 274 QEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN 333
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ K GFV FA A +A+ + + + L +LA+ + D+++
Sbjct: 334 RSKG-FGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRA 379
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ LQ SE+GP V + +D+ + + G+ ++ + + K AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRQSLGYGYVNFEDPKHAEQALE 72
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ N++ P + W+ DP ++ SG + ++KNL +++ Q +L F G
Sbjct: 73 VL---NYEPLMGRPIRIMWSQRDP-SLRKSGKGNI---FIKNLDKSIEQKELYDTFSFFG 125
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
RI + + GQ K GFVHF + A +A++ + + + P+ ++KS
Sbjct: 126 RILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
Query: 361 AGGSVSEKPSLLQNYPP 377
V ++N+PP
Sbjct: 185 QARKVKFNNLYVKNFPP 201
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + SIG+V +R+ + + + G+A+V + + + KA++
Sbjct: 57 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALE 116
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ + +FI N+ ++ L + G + +
Sbjct: 117 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-NILSCK 175
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D + N++G+ F+ Y + A + + + L V P+ S
Sbjct: 176 VAQD--ENGNSKGYGFVHYETAEAANNAIKAVNG--MLLNEKKVFVGHHIPKKDRMSKFE 231
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA VYVKN+ VT D+ ++LFE +G+IT + + GFV+F + S
Sbjct: 232 EMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHES 291
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A KA+ + GQ L A+
Sbjct: 292 AAKAVDELNDKDWKGQKLYVGRAQ 315
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D K E+ A + + VY+ I + ++ + R+ + G++T + ++ +
Sbjct: 221 IPKKDRMSKFEEMKA---NFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGK 277
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A+KA+D+LN+ ++KG+K+ +Q K+
Sbjct: 278 SRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKH 318
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E A+ AI +
Sbjct: 147 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETAEAANNAIKAV 205
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI ++ +++ + G +
Sbjct: 206 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQ-I 264
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L D + +RGF F+ + H+ A + ++ + ++K V A ++
Sbjct: 265 TSASLAHD-NETGKSRGFGFVNFVKHESAAKAVDELNDKDWK--GQKLYVGRAQKKHERE 321
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +YVKNL +V ++L+ +F G IT V
Sbjct: 322 EELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKV 373
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + + +E L D + ++ +R+ + + + G+A+V F N + AS
Sbjct: 31 PFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDAS 90
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
A++ LN T GK IR SQ +FI N+ + ++ L + G
Sbjct: 91 NAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFG--- 147
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD- 268
T + + +S ++G+ F+++ N + A+ + +++ N L + R +
Sbjct: 148 TVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRL---NGMLINDKQVYVGLFIRRQER 204
Query: 269 --SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++G+ + VYVKNL T + LKKLF +G IT V G+ + GFV+F
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRC-FGFVNFQN 263
Query: 327 RSSAMKAL 334
SA A+
Sbjct: 264 PDSAAAAV 271
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 27/154 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + ++ DL+ G +T +MK + +++ F FV F+N + A+
Sbjct: 211 PKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNG-KSRCFGFVNFQNPDSAAA 269
Query: 159 AIDKLNNTE-------FKGKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A+++LN T + G+ R + +A+ + L++ N+ ++
Sbjct: 270 AVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSF 329
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
E L+ + SE G +T +++ D S GF
Sbjct: 330 SDEKLKDLFSEFGT-ITSCKVMIDSNGRSKGSGF 362
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G+ +Y+ + S+ L+D G +T ++M + +KG FV+F E ASKA
Sbjct: 316 QGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMI-DSNGRSKGSGFVSFSTPEEASKA 374
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
++++N K + + +Q K
Sbjct: 375 LNEMNGKLIGRKPLYVAVAQRK 396
>gi|388514909|gb|AFK45516.1| unknown [Lotus japonicus]
Length = 150
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGA 390
MKALKNTEKYE+DG+ LECSLAKPQADQ+S+G S S+KP +L YP +GYG+ GG YG
Sbjct: 1 MKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGG 60
Query: 391 LGAGFGAAAFAQTTVW 406
+GAG+GAA FAQ ++
Sbjct: 61 IGAGYGAAGFAQPLMY 76
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 132/304 (43%), Gaps = 57/304 (18%)
Query: 57 IEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEH 116
+E+EV VEE A+AG EDE +KK E EV++ G+P +A E
Sbjct: 83 VEKEV---VEEAGMMAEAG-------EDEGRRKKRKEY--------EVFVFGLPPEAVEE 124
Query: 117 DLRDFCQSIGEVTEVRIMKGKDSSE---NKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
++ GEV EVR+++ D +E NKGFAFV F V A A D L + KGK
Sbjct: 125 NVAGALAEAGEVEEVRLVR--DPAEPQLNKGFAFVRFAEVWQARWAADDLRTAKIKGKAC 182
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN------------- 220
+ L + NI +W +DL +++K
Sbjct: 183 GICKNNDNETLHLRNICFDWSKDDL----------------AENLKTFELENLEDINLIE 226
Query: 221 ----SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVDSSGASQV 275
NRG+AF+++ +H A K+ + LGT+ +S+++ + D +V
Sbjct: 227 HPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDLYLGTDIKAQISFSNTISQDDKVMEKV 286
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K+V++ LP + +D +++ F G I + + ++ GF+ F R +A+ +
Sbjct: 287 KSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCID 346
Query: 336 NTEK 339
K
Sbjct: 347 MVNK 350
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ G+P E D+R+ GE+ +++ + +++ K F F++F + A ID +
Sbjct: 289 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCIDMV 348
Query: 164 NNTEF 168
N F
Sbjct: 349 NKGRF 353
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 123/252 (48%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V + N + A++A++
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + + L S G + +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D +S ++G+ F++Y + + A+ + +K+ N K P V + R++ +
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQE-RDM-AVD 201
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++ V+VKNL + +++L+K+F G IT V V + G+ + GFV+F A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRC-FGFVNFENAEDAA 260
Query: 332 KALKNTEKYELD 343
+A++ Y+LD
Sbjct: 261 RAVEALNGYKLD 272
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D + G + ++ DSS ++KG+ FV + + E A KAI+K
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKV--AVDSSGQSKGYGFVQYDSDEAAQKAIEK 174
Query: 163 LNNTEFKGKKIRC-----------STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ + + ++ +F+ N+ + E+L+K+ E G +T
Sbjct: 175 LNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-TIT 233
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN---- 266
V ++KD S R F F+ + N + A + + + +KL V A ++
Sbjct: 234 SVAVMKDEDGKS--RCFGFVNFENAEDAARAVEALNG--YKLDNKDWFVGRAQKKSEREM 289
Query: 267 ----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++ SQ +Y+KNL +++ D+LK+LF +G IT V G K
Sbjct: 290 ELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSK 349
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A +AL + + L +LA+ + ++++
Sbjct: 350 GS-GFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRA 392
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 26/151 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ + E +LR G +T V +MK +D +++ F FV F N E A++A++
Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDED-GKSRCFGFVNFENAEDAARAVE 264
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN + K +Q K L++ N+ + +
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDK 324
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
L+++ S G +T ++++D S GF
Sbjct: 325 LKELFSPYG-TITSCKVMRDPSGVSKGSGFV 354
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 123/252 (48%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V + N + A++A++
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + + L S G + +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D +S ++G+ F++Y + + A+ + +K+ N K P V + R++ +
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHE-RDM-AVD 201
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++ V+VKNL + +++L+K+F G IT V V + G+ + GFV+F A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRC-FGFVNFENAEDAA 260
Query: 332 KALKNTEKYELD 343
+A++ Y+LD
Sbjct: 261 RAVEALNGYKLD 272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 125/284 (44%), Gaps = 35/284 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D + G + ++ DSS ++KG+ FV + + E A KAI+K
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKV--AVDSSGQSKGYGFVQYDSEEAAQKAIEK 174
Query: 163 LNNTEFKGKKIRCSTSQAKY------------RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ K+ +F+ N+ + E+L+K+ E G +T
Sbjct: 175 LNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-AIT 233
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN---- 266
V ++KD S R F F+ + N + A + + + +KL V A ++
Sbjct: 234 SVAVMKDEDGKS--RCFGFVNFENAEDAARAVEALNG--YKLDNKDWFVGRAQKKSEREM 289
Query: 267 ----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++ SQ +Y+KNL +++ ++LK+LF +G IT V G K
Sbjct: 290 ELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSK 349
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A +AL + + L +LA+ + ++++
Sbjct: 350 GS-GFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRA 392
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 119/264 (45%), Gaps = 21/264 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E +L + SIG V VR+ + + + + G+ +V F E A A+
Sbjct: 70 ASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMG 129
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + G+ IR + K R +FI +P + S L+ + G + +
Sbjct: 130 QLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGK-ILSCK 188
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV----DS 269
V D +S RGF F+ + + K AE + + N G V+ PR
Sbjct: 189 AVLD--HSGRCRGFGFVHFEDPKVAERAIAE-ANGKDAGGDRKLRVAPFKPRKQREQEQE 245
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
VYVK+L R +++L KLFE +G IT + K + GFV+FA+ +
Sbjct: 246 ERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTEA 305
Query: 330 AMKALKNTEKYE-----LDGQALE 348
A K ++ E ++ +DG A E
Sbjct: 306 AQKCVEEGEMHQRDIFYVDGMAFE 329
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + +E DLR F + G V V++M+ K+ ++ F FVTF E A AI
Sbjct: 428 GGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGV-SRCFGFVTFATREEAESAI 486
Query: 161 DKLNNTEFKGKKI 173
K N + + I
Sbjct: 487 AKKNRQPLQDRPI 499
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YVKN NVT++ L+K FE G + V V K G + GFV FA R A A+
Sbjct: 431 LYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRC-FGFVTFATREEAESAIAKK 489
Query: 338 EKYEL 342
+ L
Sbjct: 490 NRQPL 494
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 15/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L D + V +R+ + + + G+A+V F N E AS+A++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G + +
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 162
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K V D +S
Sbjct: 163 VAMDVVGRS--KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 220
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 221 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEAAA 279
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A++ L L A+ ++D+
Sbjct: 280 VAVEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 30/172 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ +P + ++ +L+ G+++ +MK + S ++ F FV F + E A+
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 280
Query: 159 AIDKLN------NTEFKGKKIRCSTSQAKYR------------------LFIGNIPRNWG 194
A++K+N + + G+ + S + + R L++ N+ +
Sbjct: 281 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 340
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKM 245
E L+++ SE G V K M NS +RGF F+ Y N + A + ++M
Sbjct: 341 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + E L D + V VR+ + + + G+A+V F N E AS+A+D
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAMD 116
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G T +
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFG---TILS 173
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
M ++G+ F+++ + A+ + K+ N K V D +S
Sbjct: 174 CKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGA 233
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 234 VPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFESPEAAA 292
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A++ L L A+ ++++
Sbjct: 293 VAVEKMNGISLGEDVLYVGRAQKKSER 319
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 15/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L D + V +R+ + + + G+A+V F N E AS+A++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G + +
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 162
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K V D +S
Sbjct: 163 VAMDVVGRS--KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 220
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 221 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEAAA 279
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A++ L L A+ ++D+
Sbjct: 280 VAVEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 30/172 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ +P + ++ +L+ G+++ +MK + S ++ F FV F + E A+
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 280
Query: 159 AIDKLN------NTEFKGKKIRCSTSQAKYR------------------LFIGNIPRNWG 194
A++K+N + + G+ + S + + R L++ N+ +
Sbjct: 281 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 340
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKM 245
E L+++ SE G V K M NS +RGF F+ Y N + A + ++M
Sbjct: 341 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 15/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L D + V +R+ + + + G+A+V F N E AS+A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G + +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K V D +S
Sbjct: 177 VAMDVVGRS--KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 234
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 235 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEAAA 293
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A++ L L A+ ++D+
Sbjct: 294 VAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ +P + ++ +L+ G+++ +MK + S ++ F FV F + E A+
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWG 194
A++K+N + +Q K L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKM 245
E L+++ SE G V K M NS +RGF F+ Y N + A + ++M
Sbjct: 355 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 402
>gi|313227332|emb|CBY22478.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 13/139 (9%)
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL-GTNAPTVSWADPRNV-DSSGASQVKA 277
N ++NRGFAF+E+ +H A ++ + N + L G V WADP N D + S VK
Sbjct: 11 NGASNRGFAFVEFESHMDASTVKKNLLNRSLALFGRYYQNVDWADPENTPDDNVMSTVKN 70
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK-- 335
+YVK T++++K LFE +G + KV ++ N FVHF ER SA+KA++
Sbjct: 71 LYVKGWSEARTEEEIKALFEPYGVVEKV--------KKINNFSFVHFVERDSALKAIEAM 122
Query: 336 NTEKYELDGQALECSLAKP 354
N + + D + ++ SLAKP
Sbjct: 123 NGKNFGND-EVIDVSLAKP 140
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + SE L + +G+V +R+ + + + G+++V + N + A++A++
Sbjct: 24 TSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALE 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L + G + +
Sbjct: 84 LLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFG-NILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F+++ + A+ + +K+ N K P V + R+ + G
Sbjct: 143 VATDA--SGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQE-RD-QAGG 198
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
S+ VYVKNL T D+LKK+F G I+ VV G+ K GFV+F A
Sbjct: 199 VSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKC-FGFVNFEHPDDAA 257
Query: 332 KALKNTEKYELD 343
KA++ + + D
Sbjct: 258 KAVEALQGKKFD 269
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 117/282 (41%), Gaps = 29/282 (10%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ S ++KG+ FV F E A AI+
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDA-SGQSKGYGFVQFEQEESAQNAIE 170
Query: 162 KLNNTEFKGKKI-------RCSTSQA----KYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
K+N K++ R QA K+ +++ N+ ++L+KV GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGP-I 229
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAP 257
+ +++D N ++ F F+ + + A + + + F K A
Sbjct: 230 SSAVVMRD--NDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAE 287
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ + + Q +Y+KNL V +++++LF +G IT V GQ K
Sbjct: 288 LRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKG 347
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
GFV F+ A +A+ + + L +LA+ + +++
Sbjct: 348 S-GFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRKEERR 388
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKNL V+ ++ ++LFE +G IT + + GF +F +
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLK 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E GQ L A+
Sbjct: 287 HESAAAAVEELNDKEYKGQKLYVGRAQ 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ + + S + R+ + GE+T I + ++ +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF F F E A+ A+++LN+ E+KG+K+ +Q K+
Sbjct: 276 SRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKH 316
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ N+ +E+ +++ + G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + + +RGF F + H+ A + +++ + +K V A ++
Sbjct: 263 TSASISRDGE-TGKSRGFGFFYFLKHESAAAAVEELNDKEYK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
V+ + Q +YVKNL ++ ++L+ LF G IT V
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARV 371
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 25/281 (8%)
Query: 97 LPPHGS-------EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVT 149
LPP S +Y+G + +E + + IG V +R+ + + + G+A+V
Sbjct: 33 LPPQTSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 92
Query: 150 FRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKV 201
+ N +A+++LN + KG+ R SQ + +FI N+ ++ L
Sbjct: 93 YLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 152
Query: 202 VSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
G V ++ D + S +G+ F+ Y + AE + + + L V
Sbjct: 153 FVAFG-NVLSCKVATDEQGRS--KGYGFVHYETAEAAETAIKAVN--GMLLNDKKVYVGP 207
Query: 262 ADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
PR S ++KA +Y+KNL VTQ++ ++LF +G +T +V G+ K
Sbjct: 208 HIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKG 267
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
GFV++ A A+ N +L G+ L + A+ +A++
Sbjct: 268 -FGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAER 307
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 135 IFIKNLDEQIDNKALHDTFVAFGNVLSCKVAT-DEQGRSKGYGFVHYETAEAAETAIKAV 193
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ L+I N+ E+ +++ + G
Sbjct: 194 NGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVT 253
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
+ + V D S +GF F+ Y +H+ A+ + + + + K V+ A +
Sbjct: 254 SAIVQVDDEGRS---KGFGFVNYESHEEAQAAVDNLHDTDLK--GKKLYVTRAQKKAERE 308
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +YVKNL +V D+L+ FE G IT V + G
Sbjct: 309 EELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSS 368
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + L SLA+
Sbjct: 369 KG-FGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQ 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 30/204 (14%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ ++L + + +YI + + ++ + + G VT I++ D +KGF F
Sbjct: 212 KERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSA-IVQVDDEGRSKGFGF 270
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V + + E A A+D L++T+ KGKK+ + +Q +KY+
Sbjct: 271 VNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVN 330
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++ N+ + + L+ G +T +++ D K SS +GF F+ + + A +
Sbjct: 331 LYVKNLEDDVDDDKLRAEFEPFG-TITSCKVMSDEKGSS--KGFGFVCFSSPDEATKAIA 387
Query: 244 KMTNPNFKLGTNAPTVSWADPRNV 267
+M N +G+ VS A R V
Sbjct: 388 EMNNK--MIGSKPLYVSLAQRREV 409
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D +S +G+ F+ Y + A + + + L V P+
Sbjct: 174 LSCKVAQDETGAS--KGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT+D ++LFE +G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA+ + GQ L A+
Sbjct: 289 THESAFKAVDELNNKDFHGQDLYVGRAQ 316
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E AS+AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DETGASKGYGFVHYETDEAASQAIKHV 207
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI + +D +++ + G V
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYG-DV 266
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A + ++ N +F G + V A ++
Sbjct: 267 TSSSLARDQEGKS--RGFGFVNFTTHESAFKAVDELNNKDFH-GQDL-YVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V D+L+++F+ G IT V
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLREMFKDFGSITSAKV 374
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 52 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ D N++G+ F+ Y A + + + L V P+ S
Sbjct: 171 SCKVAVD--EHGNSKGYGFVHYETSDAANQAIKSVN--GMLLNEKKVFVGHHIPKKDRMS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
++KA +YVKN+ T D+ ++LFE +G+IT + A Q K R GFV+F
Sbjct: 227 KFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASL--AHDDQGKVRGFGFVNFI 284
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ + GQ L A+
Sbjct: 285 RHEDAAKAVDELNDLDFKGQKLYVGRAQ 312
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D K E+ A + + +Y+ I + ++ + R+ + G++T + D +
Sbjct: 219 IPKKDRMSKFEEMKA---NFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAH-DDQGK 274
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------A 180
+GF FV F E A+KA+D+LN+ +FKG+K+ +Q A
Sbjct: 275 VRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSA 334
Query: 181 KYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KY+ L++ N+ E+L+K+ G +T ++++D
Sbjct: 335 KYQGVNLYVKNLADEIDDEELRKIFEPYG-AITSAKVMRD 373
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + +KG+ FV + + A++AI +
Sbjct: 145 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAV-DEHGNSKGYGFVHYETSDAANQAIKSV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI ++ +++ + G +
Sbjct: 204 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQ-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L D + RGF F+ + H+ A + ++ + +FK V A ++
Sbjct: 263 TSASLAHD--DQGKVRGFGFVNFIRHEDAAKAVDELNDLDFK--GQKLYVGRAQKKHERE 318
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ S Q +YVKNL + ++L+K+FE +G IT V
Sbjct: 319 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSAKV 370
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 36/286 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + ++ L++ ++G+V E++I+K K + + G+ FV F + A A+ L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 164 NNTEFKGKKIRCS---------TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
N G+++R + S +++++F+G++ + + L + G +
Sbjct: 84 NGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSC--GCADARV 141
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS----- 269
+ D N+ ++G+ F+ + AE + +M+ LG+ WA + +S
Sbjct: 142 MWD-HNTGRSKGYGFVSFKTRADAEQALSQMSGT--MLGSRRIRCGWAQHKQENSQASFA 198
Query: 270 -----SGASQVKA------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
S S+ +A VYV NL +V+ +L+ G + V + K
Sbjct: 199 AVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKI------YRKGG 252
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS 364
F FA + A++A+ L G+AL+CS + QA + GG+
Sbjct: 253 YAFAQFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARKGGPGGA 298
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 6/199 (3%)
Query: 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYH 233
R + A L++GN+ LQ++ S +G V ++++KD K + + G+ F+++
Sbjct: 14 RLGSGDAAKALYVGNLHPFVTDAMLQEIFSTLGQ-VGEIKIIKD-KLTGLSAGYGFVQFL 71
Query: 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLK 293
+H+ A+ + Q + L V+WA ++ ASQ + ++V +L ++ L
Sbjct: 72 DHRAADMALQSLNGR--VLHGQELRVNWAFQKDQREDSASQFQ-IFVGDLASDINDKLLC 128
Query: 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ F+ G V+ G+ K GFV F R+ A +AL L + + C A+
Sbjct: 129 EAFQSCGCADARVMWDHNTGRSKG-YGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQ 187
Query: 354 PQADQKSAGGSVSEKPSLL 372
+ + A + ++ S L
Sbjct: 188 HKQENSQASFAAVDRVSTL 206
>gi|340712736|ref|XP_003394911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Bombus
terrestris]
Length = 270
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G EV+ G IP D E +L + G++ ++R+M + N+G+AF+TF N E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDL 198
+A+ +L+N E K GK ++ + S RLF+GNIP++ G E++
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEI 260
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T+++ + LFE G IT + + GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTS 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ + GQ L A+
Sbjct: 287 HDNAAAAVEALNDKDFKGQKLYVGRAQ 313
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E + RD + GE+T + + +S +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + + A+ A++ LN+ +FKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ S G +T ++++D
Sbjct: 336 KYQGVNLYIKNLSDDIDDEKLRELFSSYGT-ITSAKVMRDF 375
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ + + + G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H A + + + + +FK V A ++
Sbjct: 263 TSATLARDAE-SGKSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 95 LALPPHGS----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
+ PP+ + +YIG + D +E L + G V +R+ + S + G+A+V F
Sbjct: 41 MGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 100
Query: 151 RNVELASKAIDKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVV 202
+ A +A+D +N G+ +R SQ A R +FI N+ R ++ +
Sbjct: 101 QQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 160
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
S G + ++ D SS RG+ F+ + + A+ + +K+ L V
Sbjct: 161 SLFG-NILSCKVAADEDGSS--RGYGFVHFETEESAQIAIEKVN--GMLLSGKKVYVGKF 215
Query: 263 DPR--NVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
R + G S +K V+VKN ++ Q++L K+F +G IT VV G+ K
Sbjct: 216 QTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKG- 274
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
GFV +A+ +A KA+ + + L+G L+ S+ + Q
Sbjct: 275 FGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQ 311
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 116/285 (40%), Gaps = 33/285 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + D G + ++ +D S ++G+ FV F E A AI+K+
Sbjct: 142 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGS-SRGYGFVHFETEESAQIAIEKV 200
Query: 164 NNTEFKGKKIRCSTSQAKYR--------------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ Q + + +F+ N + E L K+ S+ G +
Sbjct: 201 NGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAE-----YSRQKMTNPNFKLGT---NAPTVSW 261
T ++ D +GF F+ Y + A+ + + + + KL +
Sbjct: 260 TSAVVMTDADGKP--KGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERT 317
Query: 262 AD-PRNVDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
AD R ++ +V+ +YVKN+ +T + L+ F G IT V + G+
Sbjct: 318 ADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRS 377
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F + A A+ + + L +LA+ + D+++
Sbjct: 378 KG-FGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRA 421
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ I + ++ LR S G +T ++M ++ +KGF FV F E A+ A
Sbjct: 336 QGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMV-DENGRSKGFGFVCFEKPEEATAA 394
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N+ K + + +Q K
Sbjct: 395 VTEMNSKMMGSKPLYVALAQRK 416
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T+++ + LFE G IT + + GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTS 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ + GQ L A+
Sbjct: 287 HDNAAAAVEALNDKDFKGQKLYVGRAQ 313
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E + RD + GE+T + + +S +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + + A+ A++ LN+ +FKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ S G +T ++++D
Sbjct: 336 KYQGVNLYIKNLSDDIDDEKLRELFSSYGT-ITSAKVMRDF 375
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ + + + G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H A + + + + +FK V A ++
Sbjct: 263 TSATLARDAE-SGKSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T+++ + LFE G IT + + GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTS 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ + GQ L A+
Sbjct: 287 HDNAAAAVEALNDKDFKGQKLYVGRAQ 313
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E + RD + GE+T + + +S +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + + A+ A++ LN+ +FKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ S G +T ++++D
Sbjct: 336 KYQGVNLYIKNLSDDIDDEKLRELFSSYGT-ITSAKVMRDF 375
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ + + + G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H A + + + + +FK V A ++
Sbjct: 263 TSATLARDAE-SGKSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 18/252 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V + N + A++A+D
Sbjct: 32 TSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALD 91
Query: 162 KLNNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ L S G + +
Sbjct: 92 MLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFG-AILSCK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F+++ N + A+ + K+ N K P V + + ++
Sbjct: 151 IATDA--SGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERES--ATN 206
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++ VYVKNL + T + LK +F +G IT VV G+ K GFV+F A
Sbjct: 207 KTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKC-FGFVNFENADDAA 265
Query: 332 KALK--NTEKYE 341
++++ N +K++
Sbjct: 266 RSVEALNGKKFD 277
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 37/287 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + +I S ++KG+ FV F N E A A D
Sbjct: 120 ANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDA-SGQSKGYGFVQFDNEESAKNATD 178
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ +T++ K+ +++ N+ + EDL+ + E GP +
Sbjct: 179 KLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGP-I 237
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADP 264
T +++D S + F F+ + N A S + + F +G
Sbjct: 238 TSAVVMQDGDGKS--KCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTE---- 291
Query: 265 RNVDSSG-----------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
R V+ G Q +YVKNL ++ D+L++LF G IT V G
Sbjct: 292 REVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNG 351
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ GFV F+ A +AL + + + L +LA+ + D+++
Sbjct: 352 ISRGS-GFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRA 397
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 18/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V + N AS+A+D
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G IR S +FI N+ + + L S G + +
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SILSCK 147
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D +S ++GF F+++ + A + +K+ N K P + + +V S
Sbjct: 148 VATD--SSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESV--SE 203
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
++ V+VKNL +++ LK +F G IT VVV + G+ K++ GFV+F A
Sbjct: 204 KTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV--MRDGEGKSKCFGFVNFENADDA 261
Query: 331 MKALKNTEKYELDGQ 345
++++ ++DG+
Sbjct: 262 ARSVEALNGKKVDGK 276
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 61/342 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D + G + ++ DSS ++KGF FV F E A KAI+K
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKV--ATDSSGQSKGFGFVQFDTEEAALKAIEK 176
Query: 163 LNNTEFKGKKI----------RCSTS-QAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R S S + K+ +F+ N+ EDL+ + E GP +T
Sbjct: 177 LNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-IT 235
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW-------AD 263
V +++D + S + F F+ + N A S + + G W
Sbjct: 236 SVVVMRDGEGKS--KCFGFVNFENADDAARSVEALN------GKKVDGKEWYVGKAQKKS 287
Query: 264 PRNVD-----------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
R V+ ++ Q +YVKNL ++ D+LK+LF G IT V
Sbjct: 288 EREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPN 347
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ-----------KSA 361
G + GFV F+ A +AL + + L +LA+ + D+ +
Sbjct: 348 GISRGS-GFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPM 406
Query: 362 GGSVSEKPSLLQNYPP-------HIGYGLAGGTYGALGAGFG 396
+ S P + YPP I YG A T + GFG
Sbjct: 407 AMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFG 448
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 24/255 (9%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + ++ L D +G+V VR+ + + + G+ +V + A++A+D
Sbjct: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
Query: 162 KLNNTEFKGKKIRCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
+LN T GK IR S YR +FI N+ ++ ++ L S G +
Sbjct: 100 ELNFTPLNGKPIRIMYS---YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NIL 155
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVD 268
++ D S RG+ F+++ N + A+ + K+ N K P + + +
Sbjct: 156 SCKVATDSLGQS--RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
++ ++ VYVKNL T+D LKK+F G IT V G+ K GFV+F +
Sbjct: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPD 270
Query: 329 SAMKALK--NTEKYE 341
A ++++ N +K++
Sbjct: 271 DAARSVEALNGKKFD 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 39/279 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162
++I + L D + G + ++ DS +++G+ FV F N E A AIDK
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKV--ATDSLGQSRGYGFVQFDNEESAKSAIDK 187
Query: 163 LNNTEFKGKKI----------RCSTS-QAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R ST+ + ++ +++ N+ +DL+K+ E G +T
Sbjct: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI-IT 246
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADPR 265
+++D S + F F+ + + A S + + F +G R
Sbjct: 247 STAVMRDADGKS--KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE----R 300
Query: 266 NVDSSGASQVKA-----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
++ G + +YVKNL +++ D+LK+LF G IT V G
Sbjct: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ GFV F+ A KAL + + L +LA+
Sbjct: 361 SRGS-GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + +E DL+ G +T +M+ D ++K F FV F + + A+++++
Sbjct: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVE 277
Query: 162 KLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWGSED 197
LN +F K+ +Q KY L++ N+ + +
Sbjct: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+++ SE G +T ++++D S RG F+ + AE + + +T N K+ + P
Sbjct: 338 LKELFSEFG-TITSCKVMRDPNGIS--RGSGFVAFS---TAEEASKALTEMNGKMVVSKP 391
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 18/255 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + S + G+ +V + N AS+A+D
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G IR S +FI N+ + + L S G + +
Sbjct: 89 VLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SILSCK 147
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D +S ++GF F+++ + A + +K+ N K P + + +V S
Sbjct: 148 VATD--SSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESV--SE 203
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
++ V+VKNL +++ LK +F G IT VVV + G+ K++ GFV+F A
Sbjct: 204 KTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV--MRDGEGKSKCFGFVNFENADDA 261
Query: 331 MKALKNTEKYELDGQ 345
++++ ++DG+
Sbjct: 262 ARSVEALNGKKVDGK 276
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 138/342 (40%), Gaps = 61/342 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D + G + ++ DSS ++KGF FV F E A KAI+K
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKV--ATDSSGQSKGFGFVQFDTEEAALKAIEK 176
Query: 163 LNNTEFKGKKI----------RCSTS-QAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R S S + K+ +F+ N+ EDL+ + E GP +T
Sbjct: 177 LNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-IT 235
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW-------AD 263
V +++D + S + F F+ + N A S + + G W
Sbjct: 236 SVVVMRDGEGKS--KCFGFVNFENADDAARSVEALN------GKKVDGKEWYVGKAQKKS 287
Query: 264 PRNVD-----------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
R V+ ++ Q +YVKNL ++ D+LK+LF G IT V
Sbjct: 288 EREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPN 347
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS-----------A 361
G + GFV F+ A +AL + + L +LA+ + D+++
Sbjct: 348 GISRGS-GFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPM 406
Query: 362 GGSVSEKPSLLQNYPP-------HIGYGLAGGTYGALGAGFG 396
+ S P + YPP I YG A T + GFG
Sbjct: 407 AMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFG 448
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 21/257 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D +G V VR+ + ++ + G+A+V + + A++A++
Sbjct: 40 TSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALE 99
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L G + +
Sbjct: 100 MLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 158
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN--PNFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F++Y + A+ + K+ N K P + + N S G
Sbjct: 159 VATDA--SGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDN--SPG 214
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNL N T+D LK++F G IT VV G+ K GFV+F A
Sbjct: 215 QVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKC-FGFVNFESPDDAA 273
Query: 332 KALKNTEKYELDGQALE 348
+A++ EL+G+ +
Sbjct: 274 QAVQ-----ELNGKKFD 285
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 119/284 (41%), Gaps = 31/284 (10%)
Query: 102 SEVYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ ++I + L D FC G + ++ S E+KG+ FV + E A AI
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFC-VFGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAI 185
Query: 161 DKLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPG 208
DKLN KK+ S Q K+ +++ N+ N +DL+++ + G
Sbjct: 186 DKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTI 245
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAP 257
+ V + + ++ F F+ + + A + Q++ F K
Sbjct: 246 TSAVVM---REGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREM 302
Query: 258 TVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ +N+ +++ Q +Y+KNL +V D+L++LF +G IT V G +
Sbjct: 303 ELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSR 362
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 363 GS-GFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKA 405
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 128/272 (47%), Gaps = 24/272 (8%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
E +H+ + A +Y+G + D +E DL V V + + + ++ +A
Sbjct: 12 ENHQHSSMFA------SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYA 65
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--AKYR-------LFIGNIPRNWGSED 197
++ F + AS A+ +LN+T+ KGK +R SQ YR L++ N+ + S
Sbjct: 66 YINFDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSG 125
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+++ + G ++ K ++ + ++GF F+++ + A +R + G
Sbjct: 126 LERMFNPFGVILS----CKVVEENGQSKGFGFVQFETEQSAVTARSALHGSMVD-GKKLF 180
Query: 258 TVSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + V +G VYVKNL N+T+D L +LF +G ++ VVV + G +
Sbjct: 181 VAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVV--MRDGMGR 238
Query: 317 NR-IGFVHFAERSSAMKALKNTEKYELDGQAL 347
+R GFV+F +A KA+ + ++ + L
Sbjct: 239 SRGFGFVNFCHPENAKKAVDSLHGRQVGSKTL 270
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 123/280 (43%), Gaps = 33/280 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + + L G + ++++ ++ ++KGF FV F + A A L
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVE--ENGQSKGFGFVQFETEQSAVTARSAL 169
Query: 164 NNTEFKGKKI----------RCSTSQAK--YRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
+ + GKK+ R + + K +++ N+ N + L ++ S+ G V+
Sbjct: 170 HGSMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGT-VSS 228
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR------ 265
V +++D S RGF F+ + + + A+ + + ++G+ V A R
Sbjct: 229 VVVMRDGMGRS--RGFGFVNFCHPENAKKAVDSLHGR--QVGSKTLFVGKALKRDERREM 284
Query: 266 -------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
N + + +YVKNL ++ L+++F +G+I V + G+ K
Sbjct: 285 LKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKG- 343
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
GFV F+ R + +A + + +DG+ L +A+ + D+
Sbjct: 344 FGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERKEDR 383
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 16/182 (8%)
Query: 67 EEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIG 126
EEEE D G DE + + PP +++++G +P+D L + G
Sbjct: 78 EEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAG 137
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS-------- 178
V ++ +D+ +++GF FVT VE A KA++K N+ E G+++ + +
Sbjct: 138 TVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE 197
Query: 179 ------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
A +R+++GN+P + S L+++ SE G V +V D + + +RGF F++
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGK-VVDARVVSD-RETGRSRGFGFVQM 255
Query: 233 HN 234
N
Sbjct: 256 SN 257
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+LF+GN+P + S+ L + + G V E++ + +++ +RGF F+ + AE +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYN-RDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK----AVYVKNLPRNVTQDQLKKLFEH 298
+K + F++ TV+ A PR +V +YV NLP +V +L++LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
HG++ V + GFV + + A+ + L+G+A++ ++A+
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G +P D L G+V + R++ +++ ++GF FV N + AI L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 164 NNTEFKGKKIRCSTSQAKYR 183
+ +G+ I+ + ++ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 125/274 (45%), Gaps = 23/274 (8%)
Query: 96 ALPPH---GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN 152
A P H + +Y+G + +E L + SIG+V +R+ + + + G+A+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 153 VELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSE 204
E KA+++LN T KGK R SQ + +FI N+ ++ L +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 205 VGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
G + ++ +D N++G+ F+ Y + A + + + L V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIP 213
Query: 265 RNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-I 319
+ S ++KA +YVKN+ +V+ + + LFE HG IT + A+ Q K+R
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASI--ARDDQGKSRGF 271
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV++ + +A A+ + GQ L A+
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D S+ D RD + G++T I + D +++GF FV + E AS A+D
Sbjct: 229 TNIYVKNIDLDVSDEDFRDLFEKHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASAAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+T+F+G+K+ +Q K+
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKH 308
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I +K+ +++ NI + ED + + + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + +F+ V A ++
Sbjct: 256 TSASIARDDQGKS--RGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ Q +Y+KNL +V ++L+ +F G IT V
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 18/269 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V + N +A++
Sbjct: 49 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 108
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + K + R SQ + +FI N+ ++ L + G V +
Sbjct: 109 QLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG-TVLSCK 167
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D + ++G+ F+ Y + AE + + + L V R S
Sbjct: 168 VATD--ETGRSKGYGFVHYETAEAAENAIKAVN--GMLLNDKKVYVGHHISRKERQSKLE 223
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+++A +YVKNL VTQD+ +LF+ +G +T V+ + G+ K GFV+F
Sbjct: 224 EMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKG-FGFVNFETHDE 282
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA+ +EL G+ L S A+ +A++
Sbjct: 283 AQKAVDELNDFELKGKKLFVSRAQKKAER 311
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ ++L + + +Y+ + + ++ + + + G VT ++ + ++KGF F
Sbjct: 216 KERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSA-VISVDEEGKSKGFGF 274
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V F + A KA+D+LN+ E KGKK+ S +Q +KY+
Sbjct: 275 VNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVN 334
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+I N+ + + L+ G +T ++++D K S +GF F+ + + A +
Sbjct: 335 LYIKNLEDDVDDDKLRAEFEPFG-TITSCKVMRDEKGQS--KGFGFVCFSSPDEATKAVA 391
Query: 244 KMTNPNFKLGTNAPTVSWADPRNV 267
+M N +GT VS A R V
Sbjct: 392 EMNNK--MIGTKPLYVSLAQRREV 413
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ ++ +KG+ FV + E A AI +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVAT-DETGRSKGYGFVHYETAEAAENAIKAV 197
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ L++ N+ ++ ++ + G V
Sbjct: 198 NGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYG-NV 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + D + S +GF F+ + H A+ + ++ + F+L VS A +
Sbjct: 257 TSAVISVDEEGKS--KGFGFVNFETHDEAQKAVDELND--FELKGKKLFVSRAQKKAERE 312
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +Y+KNL +V D+L+ FE G IT V + GQ
Sbjct: 313 EELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQS 372
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + L SLA+
Sbjct: 373 KG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 409
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 100 HGS--EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
HG+ +Y+G + + ++ L D+ + +V VR+ + ++ + G+ +V + N E A
Sbjct: 37 HGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAE 96
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+ KLN + GK IR + S LF+ N+ ++ ++ L + S G +
Sbjct: 97 KAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGT-I 155
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D S RG+ F+++ A+ + +K+ N K+ + R +
Sbjct: 156 VSCKVAADHMGQS--RGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEER 210
Query: 270 SGAS---QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
A+ + VYVKNL T D+LK F +G I+ VV + G K+R GFV+F
Sbjct: 211 ESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFE 268
Query: 326 ERSSAMKALK--NTEKYE 341
A +A++ N +K++
Sbjct: 269 NPEDAARAVEALNGKKFD 286
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 28/244 (11%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI-----------RCSTSQAKY-RLFIGN 188
+++G+ FV F + A AI+KLN K+I + + K+ +++ N
Sbjct: 167 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKN 226
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++L+ + G ++ +++D S R F F+ + N + A + + +
Sbjct: 227 LSEVTTDDELKTTFGQYG-SISSAVVMRDGDGKS--RCFGFVNFENPEDAARAVEALNGK 283
Query: 249 NF------------KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLF 296
F K + + D+ +YVKNL VT ++L++LF
Sbjct: 284 KFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELF 343
Query: 297 EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356
G IT V G K GFV F+ S A + L + G+ L +LA+ +
Sbjct: 344 AEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKE 402
Query: 357 DQKS 360
++++
Sbjct: 403 ERRA 406
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + ++ +L+ G ++ +M+ D +++ F FV F N E A++A++
Sbjct: 220 TNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAVE 278
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN +F K+ +Q K L++ N+ E
Sbjct: 279 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEK 338
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
L+++ +E G +T ++++D +S GF
Sbjct: 339 LRELFAEFGT-ITSCKVMRDPSGTSKGSGFV 368
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 16/270 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L D Q+ G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ + +FI N+ R+ ++ L S G + +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSG 271
+V D+ S +GF F+ Y + + A+ + +K+ K A S D
Sbjct: 121 VVCDINGS---KGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDA 177
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A ++VKNLP + D L + FE G ++ V+ G K GF+ F E A
Sbjct: 178 AKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCH-GFISFKEHDQA 236
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
A++ + E++G+ L C A+ +A++ S
Sbjct: 237 EAAVEIMHEKEIEGKKLYCGRAQKKAERSS 266
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 47/291 (16%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D S G + +++ D + +KGF FV + + E A +AI+K+
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVC--DINGSKGFGFVHYESDESAQRAIEKV 149
Query: 164 NNTEFKGKKI---RCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N + KK+ R + + R LF+ N+P +W ++ L + + G V
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVV 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPRN 266
+ + + S GF I + H AE + + M KL +
Sbjct: 210 SHKVICDETTGLSKCHGF--ISFKEHDQAEAAVEIMHEKEIEGKKL--------YCGRAQ 259
Query: 267 VDSSGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309
+ +S++KA +YVKNL ++ + L++ F+ G IT V
Sbjct: 260 KKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVIT 319
Query: 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
G+ K GFV F+ A KA+ G+ L LA+ + D+K+
Sbjct: 320 DLNGRSKG-FGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKA 369
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + LR+ + G +T +++ + +KGF FV F + E A+KA
Sbjct: 284 QGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNG-RSKGFGFVCFSSPEEATKA 342
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N F GK + +Q K
Sbjct: 343 VTEMNGRIFGGKPLYVGLAQRK 364
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D +S +G+ F+ Y + A + + + L V P+
Sbjct: 174 LSCKVAQDETGAS--KGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT+D ++LFE +G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA+ + GQ L A+
Sbjct: 289 THESASKAVDELNNKDFHGQDLYVGRAQ 316
>gi|84994372|ref|XP_951908.1| nucleolar, RNA-binding protein [Theileria annulata strain Ankara]
gi|65302069|emb|CAI74176.1| nucleolar, RNA-binding protein, putative [Theileria annulata]
Length = 560
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 55/302 (18%)
Query: 61 VEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRD 120
VEE + + E+ + KSG+ I E KK L +P G E+Y G +P +++E +LR+
Sbjct: 260 VEEPKKRKSEEINGFKSGEQFINKERLKKTFKTKLDIP-EGCEIYCGNLPVESTEEELRE 318
Query: 121 FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180
F + G++T V + G KG AF+TF N E A KA+D NN+ +KG+ + + +
Sbjct: 319 FFEECGKITRVNKLNG------KGIAFITFANEESAKKALD-YNNSPYKGQNLSINITVK 371
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
K GP K K SN R +H+
Sbjct: 372 K------------------------GP--------KSQKFGSNRR----TNFHSSGS--- 392
Query: 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ NF G+N+ T + P S+ + ++NL N +++ L++LF G
Sbjct: 393 -----NSGNF--GSNSGTFGTSGPSGSRSAPTEATNEICIRNLNFNSSEEGLRELFSECG 445
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
++T+ VP + + IGF+ F +A +A++ + ++DG+ + A P+ + S
Sbjct: 446 QVTRCYVPKFQDTGKPMGIGFISFTTVEAAKRAVE-YDNTDIDGRTVSIQFALPRGGRSS 504
Query: 361 AG 362
G
Sbjct: 505 RG 506
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V + P+
Sbjct: 174 LSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT + ++LFE G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A KA++ + GQ L A+
Sbjct: 289 THEAAFKAVEELNGKDFRGQDLYVGRAQ 316
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 29/161 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D ++ D R + G+VT + + ++ +
Sbjct: 223 IPKKDRQSKFEEMKA---NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
+GF FV F E A KA+++LN +F+G+ + +Q K+
Sbjct: 279 TRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 338
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ +E GP +T ++++D+
Sbjct: 339 KYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRDV 378
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ + +KG+ FV + E A++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHV 207
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI + ED +++ + G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFG-DV 266
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + + RGF F+ + H+ A + +++ +F+ G + V A ++
Sbjct: 267 TSSSLARDQEGKT--RGFGFVNFTTHEAAFKAVEELNGKDFR-GQDL-YVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V ++L+++F G IT V
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 374
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 16/261 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L D IG V+ +R+ + + + G+A+V F + AI+KL
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 164 NNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T KG+ R SQ L FI N+ ++ L S G + ++
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFG-NILSCKIA 160
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRNVDSSGA 272
D + +R F F+ + + A+ + + N G AP VS D ++
Sbjct: 161 TD--ETGKSRKFGFVHFEEEEAAKEAIDAI-NGMLLNGLEVYVAPHVSKKDRQSKLDEVK 217
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
S VYVKN+ TQ++ +K+F ++G IT V+ G+ + GFV+F + ++A+K
Sbjct: 218 SNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRG-FGFVNFEDHNAALK 276
Query: 333 ALKNTEKYELDGQALECSLAK 353
A + + GQ L A+
Sbjct: 277 ACEELNDTDFKGQKLYVGRAQ 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
+K + ++L + + + VY+ I + ++ + + G +T +++ + + +GF
Sbjct: 206 KKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSA-VLERDNEGKLRGFG 264
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------ 182
FV F + A KA ++LN+T+FKG+K+ +Q KY
Sbjct: 265 FVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGV 324
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGP--GVTGVELVKDMKNSSNNRGFAFIEY 232
LF+ N+ S D QK+ E P +T V++++D + N++GF F+ +
Sbjct: 325 NLFVKNLD---DSVDDQKLEEEFAPFGTITSVKVMRD--EAGNSKGFGFVCF 371
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 31/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D G + +I ++ +++ F FV F E A +AID +
Sbjct: 130 VFIKNLHPAIDNKALHDTFSVFGNILSCKIAT-DETGKSRKFGFVHFEEEEAAKEAIDAI 188
Query: 164 NNTEFKGKKIRCSTSQAK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N G ++ + +K +++ NI E+ +K+ S G +
Sbjct: 189 NGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYG-AI 247
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK---LGTNAPTVSW----- 261
T L +D N RGF F+ + +H A + +++ + +FK L +
Sbjct: 248 TSAVLERD--NEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQE 305
Query: 262 ----ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ ++ Q ++VKNL +V +L++ F G IT V V + G K
Sbjct: 306 LKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKG 365
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + + G+ L ++A+
Sbjct: 366 -FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 400
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + + L + G +T V++M+ ++ +KGF FV F E A+KA
Sbjct: 322 QGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMR-DEAGNSKGFGFVCFSTPEEATKA 380
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 381 ITEKNQQIVAGKPLYVAIAQRK 402
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + SIG V +R+ + + + G+A+V F N+E K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
V ++ N+ +G+ F+ + + + A + + + L V R S
Sbjct: 197 CKVAVDELGNA---KGYGFVHFDSVESANAAIEHVN--GMLLNDKKVYVGHHVSRRERQS 251
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
+KA VY+KNL +T+ + LF G IT + + K +K R GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ E G+ L A+
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQ 337
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E+E +K E + L G ++I + + + L+ + G +T +IM +
Sbjct: 341 EREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT-DE 399
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV + E A+KA+ ++N GK + + +Q K
Sbjct: 400 QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 81 QIEDEDEKKKHAELLALPPH---GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK 137
Q ++ED++ + PH + +Y+G + +E L + IG V +R+ +
Sbjct: 90 QFQNEDQEGAGPTPNSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDA 149
Query: 138 DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNI 189
+ + G+A+V + KA++ LN T KG+ R SQ + +FI N+
Sbjct: 150 VTRRSLGYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNL 209
Query: 190 PRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249
++ L + G + ++ +D + N++G+ F+ Y + A + + +
Sbjct: 210 DVAIDNKALHDTFAAFG-NILSCKVAQD--ENGNSKGYGFVHYETDEAAANAIKHVN--G 264
Query: 250 FKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKV 305
L V + P+ S ++KA VYVKN+P VT ++ ++LF +G +T
Sbjct: 265 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSS 324
Query: 306 VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ + G+ + GFV+F +A KA++ + GQ L A+
Sbjct: 325 SLARSDEGKSRG-FGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQ 371
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L D + G + ++ + ++ +KG+ FV + E A+ AI +N KK+
Sbjct: 218 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGY 276
Query: 178 ------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NIP E+ +++ ++ G VT L + + S
Sbjct: 277 HIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYG-DVTSSSLARSDEGKS- 334
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADPRNVDSSGASQVKA- 277
RGF F+ + H+ A + +++ +F+ +G + A Q KA
Sbjct: 335 -RGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKAN 393
Query: 278 ------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+Y+KNL +V D+L+++F +G IT V
Sbjct: 394 KYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKV 429
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 24/269 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E + D + IG V VR+ + + + G+A+V + N + AS
Sbjct: 11 PFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDAS 70
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVG 206
+AI++LN GK +R S YR LF+ N+ ++ ++ L + S G
Sbjct: 71 RAIEELNFMPVNGKPVRIMFS---YRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYG 127
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM--TNPNFKLGTNAPTVSWADP 264
+ ++ D+ N S +G F+++ A + +K+ T + K P V
Sbjct: 128 -KILSCKIALDVSNVS--KGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVR---- 180
Query: 265 RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
R AS+ V+VKNL T + L+KLF G I+ VV G+ K GFV+F
Sbjct: 181 RQERDPPASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKC-FGFVNF 239
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAK 353
A+KA+++ + L S A+
Sbjct: 240 ENPEDAVKAVEDLHGTTFQDKELYVSRAQ 268
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 19/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +Y+G + +E L + S+G+V +R+ + + + G+A+V + + +
Sbjct: 58 PNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 117
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN T KG+ R SQ L FI N+ ++ L + G ++
Sbjct: 118 ALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILS 177
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDS 269
V ++ NS +G+ F+ Y + AE + Q + + N L V P+
Sbjct: 178 CKVAVDELGNS---KGYGFVHY---ETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRM 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ ++LFE +G IT + + GFV++
Sbjct: 232 SKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYI 291
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ + GQ L A+
Sbjct: 292 NHEDAYKAVDELNDSDFHGQKLYVGRAQ 319
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D K E+ A + + +Y+ I + ++ + R+ + GE+T + ++ +
Sbjct: 225 IPKKDRMSKFEEMKA---NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------A 180
++GF FV + N E A KA+D+LN+++F G+K+ +Q A
Sbjct: 282 SRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSA 341
Query: 181 KYR---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
KY+ L++ N+ E+L+K+ G +T ++++D+
Sbjct: 342 KYQGVNLYVKNLADEVDDEELRKIFEAYG-AITSAKVMRDV 381
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
HG+ V+I + L D + G + ++ + +KG+ FV + E AS+A
Sbjct: 148 HGN-VFIKNLDGAIDNKALHDTFAAFGNILSCKVAV-DELGNSKGYGFVHYETAEAASQA 205
Query: 160 IDKLNNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEV 205
I +N F G I +K+ +++ NI ++ +++ +
Sbjct: 206 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKY 265
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVS 260
G +T L D + +RGF F+ Y NH+ A + ++ + +F +G
Sbjct: 266 GE-ITSASLAHD-NETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHE 323
Query: 261 WADPRNVDSSGASQVKA-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ A Q K+ +YVKNL V ++L+K+FE +G IT V
Sbjct: 324 REEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKV 377
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 67 EEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIG 126
EEEE D G DE + PP +++++G +P+D L + G
Sbjct: 78 EEEEGEDGSIGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAG 137
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS-------- 178
V ++ +D+ +++GF FVT VE A KA++K N E G+ + + +
Sbjct: 138 TVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNIAAPRGSRPE 197
Query: 179 ------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
A +R+++GN+P + ++ LQ+V SE G V +V D + + +RGF F+
Sbjct: 198 RQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHG-KVVDARVVYD-RETGRSRGFGFVTM 255
Query: 233 HN 234
N
Sbjct: 256 SN 257
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFI-----EYHNHKC 237
+LF+GN+P + S+ L + + G V E++ + +++ +RGF F+ E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAG-TVEISEVIYN-RDTDQSRGFGFVTMSTVEEAKKAV 171
Query: 238 AEYSRQKMTNPNFKLGTNAPTVSWAD--PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
+++R ++ + AP S + PR D++ +YV NLP +V D+L+++
Sbjct: 172 EKFNRYEVNGRLLTVNIAAPRGSRPERQPRQYDAA-----FRIYVGNLPWDVDNDRLQQV 226
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352
F HG++ V + GFV + + A+ + L+G+A++ ++A
Sbjct: 227 FSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIKVNVA 283
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G +P D L+ G+V + R++ +++ ++GF FVT N + AI L
Sbjct: 209 IYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAAL 268
Query: 164 NNTEFKGKKIRCSTSQAKYR 183
+ +G+ I+ + ++ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERPR 288
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
++V NLP +V L LFE G + V + + GFV + A KA++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEKF 174
Query: 338 EKYELDGQALECSLAKPQADQ 358
+YE++G+ L ++A P+ +
Sbjct: 175 NRYEVNGRLLTVNIAAPRGSR 195
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 174 LSCKVAQD--ENGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT+D ++LFE G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA+ + + GQ L A+
Sbjct: 289 THESASKAVDDLNGKDFHGQDLYVGRAQ 316
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E D R+ + G+VT + + ++ +
Sbjct: 223 IPKKDRQSKFEEMKA---NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQE-GK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E ASKA+D LN +F G+ + +Q K+
Sbjct: 279 SRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 338
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + + L+++ SE GP +T +++++
Sbjct: 339 KYQGVNLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRE 377
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + ++ +KG+ FV + E AS+AI +N KK+
Sbjct: 163 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 221
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI + +D +++ + G VT L +D + S
Sbjct: 222 HIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGD-VTSSSLARDQEGKS- 279
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+ A + + +F G + V A ++ ++
Sbjct: 280 -RGFGFVNFTTHESASKAVDDLNGKDFH-GQDL-YVGRAQKKHEREEELRKSYEAARLEK 336
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL +V D+L+++F G IT V
Sbjct: 337 ANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKV 374
>gi|429962103|gb|ELA41647.1| hypothetical protein VICG_01280 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 20/226 (8%)
Query: 19 KPVGSDE--KVDFDEDNDPEETMEEEYEYEEVEEEEEEEVIEE-EV--EEEVEEEEEDAD 73
KPV +DE + F + EE E EY + + E+ EE++E+ EV EE V E ++
Sbjct: 10 KPVWNDESEETSFSD----EECSGSELEYSDNQIEQAEEMLEDVEVSGEETVSESNVSSE 65
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
S ++ +EDE + +E V+I I +D E DLR Q +GEV V I
Sbjct: 66 EELSDAVETTNEDETQSGSEEECDEETQRTVFIKDIGYDLREDDLRQQMQRLGEVIRVTI 125
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK-------YRLFI 186
D NKGFA+V F+ + A KA+ KL+ TE G+K+ + QAK Y LF+
Sbjct: 126 PMTHDLRRNKGFAYVEFKRLADAQKAL-KLDGTELLGRKV--AVFQAKPRENRKIYTLFV 182
Query: 187 GNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
N+ +L++ G + + L D +N+ N+GF FIEY
Sbjct: 183 KNLSYTTTKSELKEYFERFGK-IYNISLPVDNENTERNKGFCFIEY 227
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGV-TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+FI +I + +DL++ + +G + + + D++ N+GFA++E+ + A+ +
Sbjct: 96 VFIKDIGYDLREDDLRQQMQRLGEVIRVTIPMTHDLRR---NKGFAYVEFK--RLADAQK 150
Query: 243 QKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ LG V A PR ++ ++VKNL T+ +LK+ FE G+I
Sbjct: 151 ALKLDGTELLGRKVA-VFQAKPRE-----NRKIYTLFVKNLSYTTTKSELKEYFERFGKI 204
Query: 303 TKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALK 335
+ +P E+N+ F+ + E +ALK
Sbjct: 205 YNISLPVDNENTERNKGFCFIEYTEPDPITRALK 238
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 124/286 (43%), Gaps = 39/286 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ + + GEV+ V++++ K + +++G+ F+ F A + +
Sbjct: 68 LWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTY 127
Query: 164 NNTEFK--GKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
N T + R + + A Y +F+G++ + LQ+ V G
Sbjct: 128 NGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGA 187
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMT---------------NPNFKLGTNAP 257
++V D + + +G+ F+++ + + +M N N G
Sbjct: 188 KVVID-RLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSGGQQFS 246
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
S+ +P+ + ++V NL NVT + L+++F +G + V +P K
Sbjct: 247 KTSYQNPQGAQNENDPNNTTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGK------ 300
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK------PQAD 357
R GFV FA+R+ A +AL+ ++ GQ + S + PQAD
Sbjct: 301 RCGFVQFADRNCAEEALRVLNGTQIGGQNIRLSWGRSPSNKQPQAD 346
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++G + + ++ LR GE+ V+I GK FV F + A +
Sbjct: 262 PNNTTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRC------GFVQFADRNCAEE 315
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 316 ALRVLNGTQIGGQNIRLS 333
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 17/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 176 LSCKVAQD--ENGNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ + LFE +G +T + + + GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA++ + E GQ L A+
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRAQ 319
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 28/160 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + ++ + R + G+VT + + +++ +
Sbjct: 225 IPKKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + E ASKA+ +LN EF G+ + +Q K+
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKAS 341
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ E L+++ SE GP +T ++++D
Sbjct: 342 KYQGVNLYIKNLDDEVDDEKLRQLFSEFGP-ITSAKVMRD 380
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E AS+AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI ++ + + + G V
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DV 268
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + + +RGF F+ + +H+ A + Q++ F G N V A ++
Sbjct: 269 TSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQELNEKEFH-GQNL-YVGRAQKKHERE 325
Query: 267 ----VDSSGASQVKA-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
A Q KA +Y+KNL V ++L++LF G IT V
Sbjct: 326 EELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
>gi|212275334|ref|NP_001130489.1| uncharacterized protein LOC100191587 [Zea mays]
gi|194689276|gb|ACF78722.1| unknown [Zea mays]
Length = 417
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 36/307 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L GEV +++++ + S ++G+ FV F + A KA+
Sbjct: 95 IWVGDLQYWMDENYLHSCFGPGGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQNF 154
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
+ NTE K S S + R +F+G++ + E L ++ S V
Sbjct: 155 SGHVMPNTERAFKLNWASYSMGEKRSEVPPDHSIFVGDLAVDVTDEMLLELFSNKYRSVK 214
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM------TNPNFKLGTNAPTVSWAD- 263
G +++ D N+ +RG+ F+ + + + +M T P ++G P S D
Sbjct: 215 GAKVIID-ANTGRSRGYGFVRFGDDNDKTLAMTEMNGVYCSTRP-IRVGLATPRRSQGDS 272
Query: 264 ----PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
PR D S + VYV L NV++D+L+K F +G + V +P K +
Sbjct: 273 GSSPPRQSDVD--STNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGK------QC 324
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAG--GSVSEKPSLLQNYPP 377
GFV F R A +AL+ + QA+ S + ++S G G + P
Sbjct: 325 GFVQFVNRVDAEEALQGLNGSTIGKQAIRLSWGRSPTSKQSRGDYGHRRNGNGMYYGTPF 384
Query: 378 HIGYGLA 384
+ GYG A
Sbjct: 385 YGGYGYA 391
>gi|218191015|gb|EEC73442.1| hypothetical protein OsI_07730 [Oryza sativa Indica Group]
Length = 312
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 125/282 (44%), Gaps = 32/282 (11%)
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN-----NTEFKGKKIRCSTSQA 180
GEV +++++ + S ++G+ FV F + A KA+ + NT+ K S S
Sbjct: 14 GEVVTIKVIRNRHSGVSEGYGFVEFFSHASAEKALQNFSGHVMPNTDRAFKLNWASYSMG 73
Query: 181 KYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
+ R +F+G++ + E L + ++ V G +++ D N+ +RG+ F+ +
Sbjct: 74 EKRSELASDHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIID-ANTGRSRGYGFVRF 132
Query: 233 HN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWADP-----RNVDSSGASQVKAVYVKN 282
+ H E + + ++G P S D R DS S + +YV
Sbjct: 133 GDDNDKTHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSPPRQSDSD--STNRTIYVGG 190
Query: 283 LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342
L N T+D+L+K F +G + V +P K + GFV F R A +AL+ +
Sbjct: 191 LDPNATEDELRKAFAKYGDLASVKIPVGK------QCGFVQFVNRPDAEEALQGLNGSTI 244
Query: 343 DGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLA 384
QA+ S + A ++S G S + + P + GYG A
Sbjct: 245 GKQAVRLSWGRSPASKQSRGDSGHRRNGMYYGTPFYGGYGYA 286
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 20/271 (7%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 56 AHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTID 115
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
KA+++LN T KG+ R SQ + +FI N+ ++ L + G
Sbjct: 116 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG- 174
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV 267
+ ++ +D S N++G+ F+ Y + A + + + L V P+
Sbjct: 175 NILSCKVAQD--ESGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVFVGHHIPKKD 230
Query: 268 DSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFV 322
S ++KA +YVKN+P + T DQ ++LFE G +T + A+ KNR GFV
Sbjct: 231 RQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASL--ARDEAGKNRGFGFV 288
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAK 353
+F A A+ + GQ L A+
Sbjct: 289 NFINHEHASAAVDELNGKDFMGQDLYVGRAQ 319
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ IP DA++ R+ + G+VT + + ++ +
Sbjct: 226 IPKKDRQSKFEEMKA---NFTNIYVKNIPADATDDQFRELFEKFGDVTSASLAR-DEAGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
N+GF FV F N E AS A+D+LN +F G+ + +Q K+
Sbjct: 282 NRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKH 322
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT------EFKGK 171
L D + G + ++ + +S +KG+ FV + E AS+AI +N F G
Sbjct: 166 LHDTFAAFGNILSCKVAQ-DESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGH 224
Query: 172 KIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
I Q+K+ +++ NIP + + +++ + G VT L +D +
Sbjct: 225 HIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFG-DVTSASLARD--EAGK 281
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
NRGF F+ + NH+ A + ++ +F +G + V A ++ ++
Sbjct: 282 NRGFGFVNFINHEHASAAVDELNGKDF-MGQDL-YVGRAQKKHEREEELRKSYEAARIEK 339
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +YVKNL +V ++L++LF +G IT V
Sbjct: 340 ASKYQGVNLYVKNLEDDVDDEKLRELFAPYGAITSAKV 377
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + SIG V +R+ + + + G+A+V F N+E K
Sbjct: 63 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 122
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 123 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 182
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
V ++ N+ +G+ F+ + + + A + + + L V R S
Sbjct: 183 CKVAVDELGNA---KGYGFVHFDSVESANAAIEHVN--GMLLNDKKVYVGHHVSRRERQS 237
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
+KA VY+KNL +T+ + LF G IT + + K +K R GFV++A
Sbjct: 238 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 295
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ E G+ L A+
Sbjct: 296 NHECAQKAVDELNDKEYKGKKLYVGRAQ 323
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E+E +K E + L G ++I + + + L+ + G +T +IM +
Sbjct: 327 EREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT-DE 385
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV + E A+KA+ ++N GK + + +Q K
Sbjct: 386 QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 428
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 127/285 (44%), Gaps = 36/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GE+ V++++ K +S+++G+ F+ F + A + +
Sbjct: 67 LWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 126
Query: 164 NNTEFK--GKKIRCSTS-----------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T G+ R + + + +F+G++ + LQ+ P
Sbjct: 127 NGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAK 186
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM------TNPNFKLG---------TN 255
G ++V D + + +G+ F+ + + + +M T P ++G +
Sbjct: 187 GAKVVID-RLTGRTKGYGFVRFGDESEQVRAMSEMQGVLCSTRP-MRIGPASNKNPSTQS 244
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
P S+ +P+ + ++V NL NVT D L+++F +G + V +P K
Sbjct: 245 QPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGK---- 300
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
R GFV FA+RS A +AL+ L GQ + S + +++++
Sbjct: 301 --RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQA 343
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V+ +R+ + + + G+A+V + N A +A++
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + K K R SQ + +FI N+ ++ L + G + +
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 175
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S +G+ F+ Y + AE + + + +L V PR +
Sbjct: 176 VAMDSTGAS--KGYGFVHYVTAESAEAAIKGVN--GMQLNDKVVFVGIHVPRRERQAKID 231
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+V+A +Y+KNLP VT ++L ++F +G +T V + G+ + GFV++ S
Sbjct: 232 EVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRG-FGFVNYENHES 290
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A KA++ + G L + A+
Sbjct: 291 ASKAVEALHDKDYKGNILYVARAQ 314
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC 237
SQ L++G + L ++ S +GP V+ + + +D + + G+A++ Y N
Sbjct: 53 SQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VSSIRVCRDAV-TRRSLGYAYVNYLNAAD 110
Query: 238 AEYSRQKMTNPNFKLGTN-APTVSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKK 294
AE + +++ N+ L N A + W+ DP ++ +G + ++KNL + L
Sbjct: 111 AERALEQL---NYSLIKNKACRIMWSQRDP-SLRKTGQGNI---FIKNLDETIDNKALHD 163
Query: 295 LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
F G I V G K GFVH+ SA A+K +L+ + + + P
Sbjct: 164 TFAAFGDILSCKVAMDSTGASKG-YGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Query: 355 QADQKS 360
+ ++++
Sbjct: 223 RRERQA 228
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 79 DMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
D ++ E++K+ L G +YI + + + L+ G +T ++MK D
Sbjct: 320 DAELRRAHEQQKYETTLKY--QGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMK-DD 376
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++GF FV F + A+KA+ ++N K + S +Q K
Sbjct: 377 KGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRK 419
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 115/268 (42%), Gaps = 17/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+D+LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D N++G+ F+ Y + A + + + L V P+
Sbjct: 176 LSCKVAQD--EHGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ +VT D + LFE G +T + + + GFV+F
Sbjct: 232 SKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFT 291
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA++ + E GQ L A+
Sbjct: 292 SHEDASKAVEELNEKEFHGQNLYVGRAQ 319
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 28/160 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I D ++ D R + G VT + + +++ +
Sbjct: 225 IPKKDRQSKFEEMKA---NFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + E ASKA+++LN EF G+ + +Q K+
Sbjct: 282 SRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKAS 341
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + L+++ SE GP +T +++++
Sbjct: 342 KYQGVNLYIKNLDDEVDDDKLRQLFSEFGP-ITSAKVMRE 380
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + + +KG+ FV + E AS+AI +N KK+
Sbjct: 165 LHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI + +D + + + G VT L +D + +
Sbjct: 224 HIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFG-HVTSSSLARD-QETGK 281
Query: 224 NRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA- 277
+RGF F+ + +H+ A E + ++ N +G + A Q KA
Sbjct: 282 SRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKAS 341
Query: 278 ------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+Y+KNL V D+L++LF G IT V
Sbjct: 342 KYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITSAKV 377
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 17/269 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L D S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N + K IR SQ L FI N+ R ++ + S G + +
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG-- 271
+ D K N++G+ F+ + + A S K+ L V PR G
Sbjct: 121 VATDEK--GNSKGYGFVHFETEEAANTSIDKVN--GMLLNGKKVYVGKFIPRKEQELGEK 176
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
A VYVKN + ++LK+ FE +G+IT V + G+ K GFV F +A
Sbjct: 177 AKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG-FGFVAFETTEAAE 235
Query: 332 KALKNTEKYEL-DGQALECSLAKPQADQK 359
A++ ++ +G++L + A+ +A+++
Sbjct: 236 AAVQALNGKDMGEGKSLYVARAQKKAERQ 264
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 116/282 (41%), Gaps = 30/282 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +KG+ FV F E A+ +IDK+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 164 NNTEFKGKKIRCST----------SQAKY--RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N GKK+ +AK +++ N ++ E L++ G +T
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK-ITS 209
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRNVD 268
+++ K ++GF F+ + + AE + Q + + G + A A+ +
Sbjct: 210 YKVMS--KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 267
Query: 269 SSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
++K +YVKNL + D+L+ F +G IT V + G+ K
Sbjct: 268 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKG- 326
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F S A A+ + + L +LA+ + ++K+
Sbjct: 327 FGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEERKA 368
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 20/270 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG+V+ +R+ + + + G+A+V + NV+ KAID
Sbjct: 60 ASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAID 119
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + KG+ IR SQ AK R +FI N+ ++ L S G + +
Sbjct: 120 ELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFG-RILSCK 178
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVD 268
+ D N ++GF F+ + + + A+ + + N N L N P V+ D ++
Sbjct: 179 VATD--NFGQSKGFGFVHFESPEAAQAA---IENVNGMLLNNNEVYVGPHVARRDRQSKL 233
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
VYVKN+ +++++K+LF G +T + G+ + FV++ E
Sbjct: 234 EEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRG-FAFVNYEEHE 292
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQ 358
+A+K++++ + G+ L A+ ++++
Sbjct: 293 AAVKSIESLNDQDYKGKKLYVGRAQKKSER 322
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + + L++ QS G ++ V++M +S ++KGF FV+F + E AS+A
Sbjct: 342 QGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMI-DESGKSKGFGFVSFSSPEEASRA 400
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 401 ISEMNQHMLAGKPLYVALAQRK 422
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 127/271 (46%), Gaps = 15/271 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +Y+G + D +E L ++G V +RI + S + G+A+V F V A KA
Sbjct: 8 RAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKA 67
Query: 160 IDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
+ +N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 68 LVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSS 127
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT--NAPTVSWADPRNVDS 269
K M + ++G+ F+ Y + + A+ + ++M + T A S D
Sbjct: 128 ----KVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELR 183
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++ VY+KN +V ++L+++F +G+ V V G+ K GFV F +
Sbjct: 184 DKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKG-FGFVSFDSHEA 242
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A A+++ +++GQ + A+ + ++++
Sbjct: 243 AKNAVEDMNGQDINGQTIFVGRAQKKVERQA 273
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K + AEL P + VYI D + LR+ G+ V++MK + ++KGF
Sbjct: 175 RKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFG 233
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------ 182
FV+F + E A A++ +N + G+ I +Q K
Sbjct: 234 FVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAA 293
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
+L+I N+ E L+K S G + VK M+ + ++GF I + +
Sbjct: 294 KLYIKNLDDTIDDETLRKEFSVFGS----ICRVKVMQEAGQSKGFGLICFFS 341
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 35/248 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G + ++M D +KG+ FV +++ A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMT--DGEGSKGYGFVHYQDRRAADRAIEEM 157
Query: 164 NN----------TEFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + + K F +N+G E L++V S+ G +
Sbjct: 158 NGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK MK+++ ++GF F+ + +H+ A+ + + M + K+ A
Sbjct: 218 S----VKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + A Q +Y+KNL + + L+K F G I +V V + GQ K
Sbjct: 274 ELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ-EAGQSK 332
Query: 317 NRIGFVHF 324
G + F
Sbjct: 333 G-FGLICF 339
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D S +G+ F+ Y + AE + + + N L + +S D +
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFS 271
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI E+ +K+ + G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 250 TSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +YI I + + + R + GE+T + +DS
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATL--SRDSEG 260
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 23/261 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + + ++ L + G+V VR+ + +S + G+A+V + N A+
Sbjct: 118 PLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAA 177
Query: 158 KAIDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+A++ LN K IR S +FI N+ + ++ L S G +
Sbjct: 178 RAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAIL 237
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV-- 267
+ + D+ S +GF F++Y + A+ + M + N L + P R
Sbjct: 238 SCKVAMDDIGQS---KGFGFVQYEKEESAQSA---MKSLNGMLINDKPVYVGPFLRKQER 291
Query: 268 -DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
+SS ++ V+VKNL + T++ L K+F +G IT VV G+ + GFV+F
Sbjct: 292 DNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRC-FGFVNFES 350
Query: 327 RSSAMKALKNTEKYELDGQAL 347
A +A++ EL+G+ +
Sbjct: 351 PDDAARAVE-----ELNGKKI 366
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 39/315 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ D ++KGF FV + E A A+
Sbjct: 210 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM-DDIGQSKGFGFVQYEKEESAQSAMK 268
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN K + S+ +AK+ +F+ N+ + EDL KV SE G
Sbjct: 269 SLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTIT 328
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLG-TNAPTVSWAD 263
+ V ++ M S R F F+ + + A E + +K+ + + +G + D
Sbjct: 329 SAVVMI-GMDGKS--RCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMD 385
Query: 264 PRNV------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ D++ Q + +Y+KNL +T DQL++LF + G+IT + + G K
Sbjct: 386 LKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKG 445
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPS 370
GFV F+ R A +AL + G+ L + A+ + ++K S V PS
Sbjct: 446 S-GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPS 504
Query: 371 L---LQNYPPHIGYG 382
+ L YPP G
Sbjct: 505 MTPRLPMYPPMPTLG 519
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + ++ LR+ + G++T +IM+ ++ +KG FV+F E AS+A
Sbjct: 402 QGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGV-SKGSGFVSFSTREEASQA 460
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q K
Sbjct: 461 LTEMNGKMISGKPLYVAFAQRK 482
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 127/275 (46%), Gaps = 19/275 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + SE L D +G + +RI + + ++ G+A+V F+N + A +A+D
Sbjct: 6 ASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALD 65
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN KG IR SQ +FI N+ ++ ++ L S G + +
Sbjct: 66 TLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 124
Query: 214 LVKDMKNSSN------NRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPR 265
+ + K N + G+ F+ + + AE + K+ N K P V +
Sbjct: 125 VCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTERL 184
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ S+ S +YVKNL +V + +L ++F G I VV + G K GF++FA
Sbjct: 185 KILSNEDS-FTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASK-EFGFINFA 242
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ +SA+ A+ + + + L A+ + ++++
Sbjct: 243 DHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRA 277
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 58/320 (18%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK-------GKDSSENKGFAFVTFRNVELA 156
++I + L D + G + ++ + G D+ E+ G+ FV F E A
Sbjct: 96 IFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAA 155
Query: 157 SKAIDKLNNTEFKGKKIRC-------------STSQAKYRLFIGNIPRNWGSEDLQKVVS 203
KAI K+N GK++ S + +++ N+ + ++L +V S
Sbjct: 156 EKAIAKINGMLLNGKQVFVGPFVKKTERLKILSNEDSFTNIYVKNLDASVDEKELSEVFS 215
Query: 204 EVGPGVTGVELVKDMKNSSNNRG-------FAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256
+ G +++N+ RG F FI + +H A + +M +FK
Sbjct: 216 KFG----------EIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNEKDFK--NKK 263
Query: 257 PTVSWADPRN------------VDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRI 302
V A +N + ++ K + YVKNL +V ++L++ F G I
Sbjct: 264 LFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSKFGDI 323
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS-- 360
T V ++ GFV F +A KAL + + + L + A+P+ ++S
Sbjct: 324 TSAKV--MSDNKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRRSQL 381
Query: 361 -AGGSVSEKPSLLQNYPPHI 379
A + ++P ++ P
Sbjct: 382 EAQYNARKQPQMIPQMMPQF 401
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ + E +L + GE+ +M+G++ + +K F F+ F + A AID
Sbjct: 194 TNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGA-SKEFGFINFADHASALIAID 252
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
++N +FK KK+ +Q K L++ N+ + E
Sbjct: 253 EMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDER 312
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L++ S+ G +T +++ D K S RGF F+ + + A + +M+ +G+
Sbjct: 313 LRQEFSKFG-DITSAKVMSDNKQS---RGFGFVCFKTPEAANKALTEMS--GHMIGSKPL 366
Query: 258 TVSWADPRNVDSSGASQVKAVY 279
V++A P+ + SQ++A Y
Sbjct: 367 YVNFAQPKELRR---SQLEAQY 385
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + + LR G++T ++M D+ +++GF FV F+ E A+KA+
Sbjct: 296 GLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMS--DNKQSRGFGFVCFKTPEAANKAL 353
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
+++ K + + +Q K
Sbjct: 354 TEMSGHMIGSKPLYVNFAQPK 374
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 18/241 (7%)
Query: 125 IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRL 184
IG V +R+ + + + G+A+V F N +A+++LN T KGK R SQ L
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 185 --------FIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236
FI N+ + ++ L + G + ++ D S +G+ F+ Y +
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFG-NILSCKVALDENGLS--KGYGFVHYEGGE 118
Query: 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQL 292
AE + Q + L V PR + +V++ +YVK L +++ +
Sbjct: 119 AAEAAIQAVN--GMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEF 176
Query: 293 KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352
+LF +G++T V+ + G+ K GFV+FA+ +A KAL E GQ L S A
Sbjct: 177 SELFAKYGQVTSAVLQVDQDGKSKG-FGFVNFADHEAAAKALTELHDSEHKGQTLYVSRA 235
Query: 353 K 353
+
Sbjct: 236 Q 236
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ G+ + SE + + G+VT + +D ++KGF FV F + E A+KA+
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQD-GKSKGFGFVNFADHEAAAKALT 218
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
+L+++E KG+ + S +Q K L++ N+ + E
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEK 278
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFI 230
+ + G +T ++++D K +S +GF F+
Sbjct: 279 VTAEFAAFG-TITSTKIMRDEKGAS--KGFGFV 308
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + D E + + G +T +IM+ + +KGF FV F + + A+KA
Sbjct: 261 QGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMR-DEKGASKGFGFVCFSSPDEATKA 319
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ +LN F K + S +Q K
Sbjct: 320 VTELNGKMFGQKPLYVSLAQRK 341
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 17/267 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + E L + V VR+ + S + G+ +V F + + A++A++
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S + LF+ N+ N S++L ++ S G + +
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG-AILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D ++ ++G+ F++Y + AE + + N L N R D
Sbjct: 121 VATD--SAGQSKGYGFVQYETEESAEAA---INGLNGMLANNRKMFVGLHMRRRDRE--V 173
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VY+KNLP ++D L++ F G IT VV G K GFV+F + A++A
Sbjct: 174 KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKC-FGFVNFKKPEFAIEA 232
Query: 334 LKNTEKYELDGQALECSLAKPQADQKS 360
++ + + L A+ + ++K+
Sbjct: 233 VEKANGKAIGDKTLYVGRAQKKEERKA 259
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 38/285 (13%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAI 160
+ +++ + + +L + S G + ++ DS+ ++KG+ FV + E A AI
Sbjct: 90 ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV--ATDSAGQSKGYGFVQYETEESAEAAI 147
Query: 161 DKLNNT------EFKGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+ LN F G +R + K+ ++I N+P + +DL++ + G +T
Sbjct: 148 NGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGE-ITSAV 206
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPR------- 265
+++D +S GF N K E++ + + N K +G V A +
Sbjct: 207 VMRDADGASKCFGFV-----NFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAEL 261
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
VD + Y+KN+ + + LKKLFE G++ V G+
Sbjct: 262 KTRFGRGRDNKVDKPNGINL---YLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRS 318
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV FA + +A+ + + L LA+P+ ++K+
Sbjct: 319 KGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKA 362
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 19/263 (7%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + SIG+V +R+ + + + G+A+V + +A+++L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T KG+ R SQ + +FI N+ ++ L + G + ++
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NILSCKVA 173
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDSSGASQ 274
+D ++N++G+ F+ Y + AE + Q + N N L V P+ S +
Sbjct: 174 QD--ENANSKGYGFVHY---ETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEE 228
Query: 275 VKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+KA +YVKN+ T ++ ++LFE +G IT + + GFV++ A
Sbjct: 229 MKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDA 288
Query: 331 MKALKNTEKYELDGQALECSLAK 353
KA++ + GQ L A+
Sbjct: 289 YKAVEELNDSDFKGQKLYVGRAQ 311
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 50/81 (61%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I + ++++ R+ + G++T + +S +N+GF FV + E A KA++
Sbjct: 234 TNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVE 293
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
+LN+++FKG+K+ +Q K+
Sbjct: 294 ELNDSDFKGQKLYVGRAQKKH 314
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 29/230 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++++ +KG+ FV + E A++AI +
Sbjct: 143 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENAN-SKGYGFVHYETAEAANQAIKNV 201
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A + +++ NI + +++ + G +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYG-DI 260
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADP 264
T L D S NRGF F+ Y H+ A + +++ + +FK +G +
Sbjct: 261 TSASLAHD-NESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEE 319
Query: 265 RNVDSSGASQVKA-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
A Q K+ +YVKNL + D+L+K+FE +G IT V
Sbjct: 320 LRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKV 369
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 18/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 50 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 109
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN T KGK R SQ +FI N+ ++ L + G +
Sbjct: 110 ALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-NIL 168
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D S +RG+ F+ Y + A + + + L V P+ S
Sbjct: 169 SCKVAQD--ESGGSRGYGFVHYETAEAANAAIKSVN--GMLLNEKKVFVGHHIPKKDRMS 224
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA +YVKN+ T D+ ++LFE +G IT + + G+ + GFV++
Sbjct: 225 KFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRG-FGFVNYIR 283
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ + Q L A+
Sbjct: 284 HEDANKAVDELNDIDFKSQKLYVGRAQ 310
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D K E+ A + + +Y+ I + ++ + R+ + GE+T + + ++ +
Sbjct: 217 IPKKDRMSKFEEMKA---NFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GK 272
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------A 180
+GF FV + E A+KA+D+LN+ +FK +K+ +Q A
Sbjct: 273 VRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSA 332
Query: 181 KY---RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
KY L++ N+ + E+L+KV G +T ++++D
Sbjct: 333 KYMGVNLYVKNLADDIDDEELRKVFEAYG-SITSAKVMRD 371
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 21/246 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + +G V +R+ + + + G+A+V F NV A +A+D
Sbjct: 34 ASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALD 93
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + +GK+ R S +F+ N+ + ++ L S G + +
Sbjct: 94 TLNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFG-NILSCK 152
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA----PTVSWADPRNVDS 269
+ D + +RG+ F+ + N + A + K+ +G A P A+
Sbjct: 153 VATD--DDGKSRGYGFVHFENDESAHKAITKLNG--MMIGEKAVYVGPFQKHAERAEQHG 208
Query: 270 SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ VY+K+LP + T++ ++K FE G+IT V + + G+ R FV++ +
Sbjct: 209 DEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGR---RFAFVNYEDFD 265
Query: 329 SAMKAL 334
SA KA+
Sbjct: 266 SAAKAV 271
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 119/300 (39%), Gaps = 55/300 (18%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ + L D G + ++ D +++G+ FV F N E A KAI
Sbjct: 122 ANVFVKNLDKTIDNKALYDTFSLFGNILSCKVAT-DDDGKSRGYGFVHFENDESAHKAIT 180
Query: 162 KLNNTEFKGKKIRCSTSQAK--------------YRLFIGNIPRNWGSE-DLQKVVSEVG 206
KLN K + Q ++I ++P +W +E D+QK E G
Sbjct: 181 KLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFG 240
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN------------------- 247
+T V + D K R FAF+ Y + A + + M
Sbjct: 241 -KITSVAIQTDRKG----RRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEEEST 295
Query: 248 -------PNFKLG-TNAPTVS--WADPRNVDSSG-----ASQVKAVYVKNLPRNVTQDQL 292
P +KL T A T + A+ RN + +Q +YVKNLP +V ++L
Sbjct: 296 EEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTEKVGNQSCNLYVKNLPEDVDDEKL 355
Query: 293 KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352
+++FE G IT V + GFV FA ++ KA++ G+ L ++A
Sbjct: 356 RQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLFVAVA 415
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ +P D + LR + GE+T ++M +++ ++GF FV F N KAI +
Sbjct: 341 LYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAM 400
Query: 164 NNTEFKGKKIRCSTSQAK 181
+ + GK + + ++ +
Sbjct: 401 HLKLYGGKPLFVAVAEKR 418
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 60/210 (28%)
Query: 89 KKHAELLALPPHGSE------VYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
+KHAE HG E VYI +P +E D++ + G++T V I + +
Sbjct: 198 QKHAERAEQ--HGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAI---QTDRK 252
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFK-------GK----------------KIRCSTS 178
+ FAFV + + + A+KA++ +N + + GK K+ + +
Sbjct: 253 GRRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRA 312
Query: 179 QAKY-----------------------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
Q K L++ N+P + E L+++ + G +T +++
Sbjct: 313 QTKTERSAELRNKFQAKNTEKVGNQSCNLYVKNLPEDVDDEKLRQMFEQFGE-ITSPKVM 371
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245
D +N+ +RGF F+ + N E + Q M
Sbjct: 372 VD-ENTGVSRGFGFVCFANQADGEKAIQAM 400
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D +S +G+ F+ Y + A + + + L V + P+
Sbjct: 174 LSCKVAQDETGAS--KGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ +VT ++ ++LFE +G +T + + G+ + GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A KA+ + GQ L A+
Sbjct: 289 THEAAYKAVDELNGNDFRGQELYVGRAQ 316
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 80/160 (50%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D ++++ R+ + G+VT + + ++ +
Sbjct: 223 IPKKDRQSKFEEMKA---NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E A KA+D+LN +F+G+++ +Q K+
Sbjct: 279 SRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKAS 338
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + + L+++ SE GP +T ++++D
Sbjct: 339 KYQGVNLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 377
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E A++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 164 NNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI + + +++ + G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYG-DV 266
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A + ++ +F+ V A ++
Sbjct: 267 TSSSLARDQEGKS--RGFGFVNFTTHEAAYKAVDELNGNDFR--GQELYVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V D+L+++F G IT V
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKV 374
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 16/241 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + +E L D I +V VR+ + + + G+ +V F N + A+ A+ L
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 164 NNTEFKGKKIRC-------STSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N T GK IR S ++ Y +FI N+ ++ L + + G V ++
Sbjct: 107 NFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGT-VLSCKVA 165
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW--ADPRNVDSSGAS 273
D S +G+ F+++ N + AE + + L V + ++G+
Sbjct: 166 VDSNGQS--KGYGFVQFENEESAERAISFLD--GMCLNDKQVYVGFFVRQQERTRTNGSP 221
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333
+ VYVKNL +T + L+K+F +G IT +V + G+ + GFV+F + SA A
Sbjct: 222 KFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRG-FGFVNFQDPDSAAAA 280
Query: 334 L 334
+
Sbjct: 281 V 281
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
V+I + L + + G V ++ DS+ ++KG+ FV F N E A +AI
Sbjct: 135 VFIKNLDSTLDNKLLHETFAAFGTVLSCKV--AVDSNGQSKGYGFVQFENEESAERAISF 192
Query: 163 LNNTEFKGKKI------------RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
L+ K++ R + S +++ N+ +EDL+KV G +T
Sbjct: 193 LDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGT-IT 251
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA-PTVSWADPR-NVD 268
++KD S RGF F+ + + A + +K+ GT A +W R
Sbjct: 252 SALVMKDQTGKS--RGFGFVNFQDPDSAAAAVEKLN------GTTAHDDKAWYVGRAQRK 303
Query: 269 SSGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
S +++KA +Y+KNL N+ +LK+LF G IT V
Sbjct: 304 SEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDH 363
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS---AGGSVSEK 368
G K GFV F+ A +ALK + + L ++A+ + ++K+ A ++
Sbjct: 364 QGVSKGS-GFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKARLQAHFALVRA 422
Query: 369 PSLLQNYPPHI-GY 381
P L P I GY
Sbjct: 423 PGALAPLPSGIPGY 436
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 27/155 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + + DL G +T +MK + + +++GF FV F++ + A+
Sbjct: 221 PKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQ-TGKSRGFGFVNFQDPDSAAA 279
Query: 159 AIDKLNNTE-------FKGKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A++KLN T + G+ R S +A+ + L++ N+ N
Sbjct: 280 AVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNI 339
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
L+++ SE G +T +++ D + S GF
Sbjct: 340 NDVKLKELFSEFG-SITSCKVMLDHQGVSKGSGFV 373
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 24/256 (9%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V F + + A++AI
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK +R S +FI N+ ++ + L S G + +
Sbjct: 100 ELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFG-NIISCK 158
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----RNVDS 269
+ D +S ++G+ F++Y + A+ + ++ + N V + P + DS
Sbjct: 159 VAVD--SSGQSKGYGFVQYETEESAQKAMGQLNG----MLLNDKQV-YVGPFLRRQERDS 211
Query: 270 SGASQV-KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAER 327
+G + VYVKNL + T D LK +F G+IT VV K G+ K + GFV+F
Sbjct: 212 TGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVV--MKDGEGKPKGFGFVNFENA 269
Query: 328 SSAMKALKNTEKYELD 343
A KA+++ D
Sbjct: 270 DDAAKAVESLNGKTFD 285
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 43/288 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDK 162
++I + L D G + ++ DSS ++KG+ FV + E A KA+ +
Sbjct: 130 IFIKNLDKSIDHKALHDTFSVFGNIISCKV--AVDSSGQSKGYGFVQYETEESAQKAMGQ 187
Query: 163 LNNTEFKGKKI----------RCSTSQAKY--RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ R ST +++ N+ + +DL+ + E G +T
Sbjct: 188 LNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFG-KIT 246
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV--- 267
++KD +GF F+ + N A + + + F W R
Sbjct: 247 SAVVMKD--GEGKPKGFGFVNFENADDAAKAVESLNGKTFD------DKEWFVGRAQKKS 298
Query: 268 ---------------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+++ Q +YVKNL +V+ ++LK+LF +G +T V
Sbjct: 299 EREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPN 358
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
G + GFV F+ A KA+ ++ + L ++A+ + D+++
Sbjct: 359 GMSRGS-GFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRA 405
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 19/273 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP S +Y+G + +E L + IG V +R+ + + + G+A+V F N+
Sbjct: 41 PPSAS-LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGE 99
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
+A++ LN T KGK R SQ L FI N+ + ++ L S G +
Sbjct: 100 RALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFG-NI 158
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D S N++G+ F+ Y + A+ + + + L V P+
Sbjct: 159 LSCKIALD--ESGNSKGYGFVHYETEEAADNAIKHVN--GMLLNDKKVYVGRHVPKKERQ 214
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ Q +A VYVKNL +V ++ ++ G IT +V G+ K GFV+F
Sbjct: 215 AKIEQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKG-FGFVNFE 273
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA+ + E G+ L + A+ + ++
Sbjct: 274 NHEDAQKAVDALNETEHKGKILYVARAQKKTER 306
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIM-KGKDSSENKGFAFVTFRNVELASK 158
G +YI + D + LR G +T ++M KD+S KGF FV F + + A+K
Sbjct: 326 QGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKDTS--KGFGFVCFSSPDEATK 383
Query: 159 AIDKLNNTEFKGKKIRCSTSQAK 181
A+ ++N K I + +Q K
Sbjct: 384 AVTEMNGRMIGSKPIYVALAQRK 406
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 22/252 (8%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + ++ L D+ + +V VR+ + ++ + G+ +V + N + A KA+ KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 164 NNTEFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N + GK IR + S LF+ N+ ++ ++ L + S G + ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-SGASQ 274
D S RG+ F+++ A+ + +K+ N K+ + R + S A +
Sbjct: 167 TDHMGQS--RGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEERESAADK 221
Query: 275 VKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
+K VYVKNL T D+LK F +G I+ VV + G K+R GFV+F A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAA 279
Query: 332 KALK--NTEKYE 341
+A++ N +K++
Sbjct: 280 RAVEALNGKKFD 291
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 32/246 (13%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI-----------RCSTSQAKY-RLFIGN 188
+++G+ FV F + A AI+KLN K+I + + K+ +++ N
Sbjct: 172 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKN 231
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++L+ + G ++ +++D S R F F+ + N + A + + +
Sbjct: 232 LSEATTDDELKTTFGQYG-SISSAVVMRDGDGKS--RCFGFVNFENPEDAARAVEALNGK 288
Query: 249 NFKLGTNAPTVSWADPRN------------VDSSGASQVKAV--YVKNLPRNVTQDQLKK 294
F V A ++ S G ++ + YVKNL VT ++L++
Sbjct: 289 KFD--DKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 295 LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
LF G IT V G K GFV F+ S A + L + G+ L +LA+
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 355 QADQKS 360
+ ++++
Sbjct: 406 KEERRA 411
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 65/150 (43%), Gaps = 26/150 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + ++ +L+ G ++ +M+ D +++ F FV F N E A++A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAVE 283
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN +F K+ +Q K L++ N+ E
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
L+++ +E G +T ++++D +S GF
Sbjct: 344 LRELFAEFGT-ITSCKVMRDPSGTSKGSGF 372
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D ++ L + +G V +RI + + + +A+V + N A +A+D
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LNNT KGK R SQ L FI N+ ++ + L S G + +
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFG-NILSCK 126
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D N S +GF F+ Y + A+ + K+ + N V ++ G +
Sbjct: 127 VVTDETNVS--KGFGFVHYESQDSADKAIMKVNG----MIINDQKVFVGPFKSSKERGQT 180
Query: 274 Q---VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
Q VYVKNL +V +++L+ L +G+IT + + + + K GF +F
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKG-FGFANF 233
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 16/264 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ +++ +KGF FV + + + A KAI K+
Sbjct: 98 IFIKNLDKSVDHKALFDTFSAFGNILSCKVVT-DETNVSKGFGFVHYESQDSADKAIMKV 156
Query: 164 NNT----------EFKGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
N FK K R T + KY +++ N+ + E+L+ ++ G +T +
Sbjct: 157 NGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYG-KITNL 215
Query: 213 ELVKDMKNSSNNRGFAFIEYHN--HKCAEYSRQKMTNPN-FKLGTNAPTVSWADPRNVDS 269
++ D K+ S GFA E + C E K+ + +G +
Sbjct: 216 TIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKF 275
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
Q +Y+KN+ ++ D+L+ F +G IT V GFV +
Sbjct: 276 ETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDE 335
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A KA+ + + L + A+
Sbjct: 336 ASKAVAEMHGRMVGNKPLYVAFAQ 359
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI I LR + G +T ++M+ S+ +KGF FV + + ASKA
Sbjct: 280 QGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKA 339
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ +++ K + + +Q K
Sbjct: 340 VAEMHGRMVGNKPLYVAFAQRK 361
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 20/323 (6%)
Query: 44 EYEEVEEEEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSE 103
E +++E E+ I+ E ++ +D E ++ EL + + +
Sbjct: 5 ETNQLQESLEKLNIDSSSTGPAENKQAPSDPAAGSGAGSAAEPSSEEQGELGGVAENSAS 64
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + IG+V+ +R+ + + ++ G+A+V + E KAID+L
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N + +G+ R SQ +FI N+ ++ L S G ++
Sbjct: 125 NYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 184
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVDSS 270
DM S + F F+ Y + AE + + N N L + VS D +
Sbjct: 185 DDMGQS---KCFGFVHYETGEAAEAA---IENVNGMLLNDREVFVGKHVSKKDRESKFEE 238
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ +YVKN+ T+ + ++LF +G+IT + + + G+ K GFV++ E SA
Sbjct: 239 MKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKG-FGFVNYEEHKSA 297
Query: 331 MKALKNTEKYELDGQALECSLAK 353
+ A++ E++GQ + A+
Sbjct: 298 VDAVEALNDKEINGQKIYVGRAQ 320
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E +E KK E + L G ++I + L + + G +T ++M D
Sbjct: 324 ERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMV-DD 382
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
+ ++KGF FV F E A+KAI ++N GK + + +Q K
Sbjct: 383 AGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRK 425
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 22/254 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + + + A++A+D
Sbjct: 24 TSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALD 83
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G IR S +FI N+ + + L S G + +
Sbjct: 84 MLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFG-NILSCK 142
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D +S ++G+ F+++ N + A+ + +K+ N L + R + A
Sbjct: 143 VATD--SSGQSKGYGFVQFDNEESAQKAIEKL---NGMLLNDKQVYVGPFLRKQERESAI 197
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSS 329
++ VYVKNL T++ LKK F +G IT VV + G K + GFV+F
Sbjct: 198 DKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVV--MRDGDGKTKCFGFVNFENADD 255
Query: 330 AMKALK--NTEKYE 341
A A++ N +K++
Sbjct: 256 AATAVEALNGKKFD 269
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 54/332 (16%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGFAFVTFRNVELASKAIDKLNNT 166
GI H A L D + G + ++ DSS ++KG+ FV F N E A KAI+KLN
Sbjct: 122 GIDHKA----LHDTFSAFGNILSCKV--ATDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 175
Query: 167 EFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
K++ + + ++ +++ N+ EDL+K E G +T +
Sbjct: 176 LLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGT-ITSAVV 234
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGT--------NAPTVSW 261
++D + F F+ + N A + + + F +G N V +
Sbjct: 235 MRD--GDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRF 292
Query: 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
+++ Q +Y+KNL ++ D+LK+LF G IT V G + GF
Sbjct: 293 EQSMK-EAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGS-GF 350
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPSL--- 371
V F+ A KAL + + L +LA+ + D++ S V+ PS+
Sbjct: 351 VAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAPSVAPR 410
Query: 372 LQNYPP-------HIGYGLAGGTYGALGAGFG 396
+ YPP I YG A GFG
Sbjct: 411 MPMYPPGGPGLGQQIFYGQAPPAIIPPQPGFG 442
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 165
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 166 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 220
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VYVKN+ VT ++ ++LF G IT + G+ + GFV++
Sbjct: 221 SKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRG-FGFVNYV 279
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+ +A A+ + + GQ L A+
Sbjct: 280 DHENAQTAVDDLNDKDFHGQKLYVGRAQ 307
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I + ++ + R+ G++T I + DS +
Sbjct: 214 ISKKDRQSKFEEMKA---NFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISR-DDSGK 269
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + + E A A+D LN+ +F G+K+ +Q K+
Sbjct: 270 SRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKH 310
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 40/235 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI E+ +++ + G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFG-DI 257
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPRN 266
T + +D +S +RGF F+ Y +H+ A+ + + + +F KL V A ++
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKL-----YVGRAQKKH 310
Query: 267 --------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 311 EREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKV 365
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 22/252 (8%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + ++ L D+ + +V VR+ + ++ + G+ +V + N + A KA+ KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 164 NNTEFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N + GK IR + S LF+ N+ ++ ++ L + S G + ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-SGASQ 274
D S RG+ F+++ A+ + +K+ N K+ + R + S A +
Sbjct: 167 TDHMGQS--RGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEERESAADK 221
Query: 275 VKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAM 331
+K VYVKNL T D+LK F +G I+ VV + G K+R GFV+F A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAA 279
Query: 332 KALK--NTEKYE 341
+A++ N +K++
Sbjct: 280 RAVEALNGKKFD 291
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 32/246 (13%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI-----------RCSTSQAKY-RLFIGN 188
+++G+ FV F + A AI+KLN K+I + + K+ +++ N
Sbjct: 172 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKN 231
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++L+ + G ++ +++D S R F F+ + N + A + + +
Sbjct: 232 LSEATTDDELKTTFGQYG-SISSAVVMRDGDGKS--RCFGFVNFENPEDAARAVEALNGK 288
Query: 249 NFKLGTNAPTVSWADPRN------------VDSSGASQVKAV--YVKNLPRNVTQDQLKK 294
F V A ++ S G ++ + YVKNL VT ++L++
Sbjct: 289 KFD--DKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 295 LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
LF G IT V G K GFV F+ S A + L + G+ L +LA+
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 355 QADQKS 360
+ ++++
Sbjct: 406 KEERRA 411
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 65/150 (43%), Gaps = 26/150 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + ++ +L+ G ++ +M+ D +++ F FV F N E A++A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAVE 283
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN +F K+ +Q K L++ N+ E
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
L+++ +E G +T ++++D +S GF
Sbjct: 344 LRELFAEFGT-ITSCKVMRDPSGTSKGSGF 372
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 28/277 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + IG V +R+ + + + G+A+V + NV +A+++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNI----------PRNWGSEDLQKVVSEV 205
N + KG+ R SQ + +FI N+ + L +
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G V ++ D + S RG+ ++ Y + AE S K N L V + R
Sbjct: 166 G-NVLSCKVATDEQGRS--RGYGYVHYETAEAAE-SAIKAVN-GMLLNDKKVYVGYHISR 220
Query: 266 NVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
S +++A +YVKNL VTQDQ +LF G +T V+ + G+ K GF
Sbjct: 221 KERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKG-FGF 279
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
V+F A KA+ + +G+ L S A+ +A++
Sbjct: 280 VNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAER 316
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 30/204 (14%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ ++L + H + +Y+ + + ++ + G VT +++ + ++KGF F
Sbjct: 221 KERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSA-VIQTDEEGKSKGFGF 279
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V F N E A+KA+D L++T+F GKK+ S +Q +KY+
Sbjct: 280 VNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVN 339
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+I N+ + E L+ G +T ++++D K +S +GF F+ + + A +
Sbjct: 340 LYIKNLEDDVDDEKLRAEFEPFG-TITSCKVMRDDKGTS--KGFGFVCFSSPDEATKAVA 396
Query: 244 KMTNPNFKLGTNAPTVSWADPRNV 267
+M N +G+ VS A R V
Sbjct: 397 EMNNK--MIGSKPLYVSLAQRREV 418
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 35/266 (13%)
Query: 116 HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175
H L D + G V ++ + ++G+ +V + E A AI +N KK+
Sbjct: 156 HALHDTFAAFGNVLSCKVAT-DEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYV 214
Query: 176 ST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
Q+K L++ N+ + ++ S+ G VT + D +
Sbjct: 215 GYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFG-AVTSAVIQTDEEGK 273
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR--------------NV 267
S +GF F+ + NH+ A + + + +F VS A + +
Sbjct: 274 S--KGFGFVNFENHEQAAKAVDTLHDTDFN--GKKLFVSRAQKKAEREEELRKSYESAKM 329
Query: 268 DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
+ Q +Y+KNL +V ++L+ FE G IT V G K GFV F+
Sbjct: 330 EKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKG-FGFVCFSSP 388
Query: 328 SSAMKALKNTEKYELDGQALECSLAK 353
A KA+ + + L SLA+
Sbjct: 389 DEATKAVAEMNNKMIGSKPLYVSLAQ 414
>gi|222628961|gb|EEE61093.1| hypothetical protein OsJ_14988 [Oryza sativa Japonica Group]
Length = 373
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 128/280 (45%), Gaps = 30/280 (10%)
Query: 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID--------------KLNNTEFKGKK 172
+V +++++ + + +++G+ FV F + A KA+ KLN + +
Sbjct: 76 KVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGE 135
Query: 173 IRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
R + + Y +F+G++ + E L ++ + V G +++ D N+ +RG+ F+ +
Sbjct: 136 KRSEVA-SDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIID-ANTGRSRGYGFVRF 193
Query: 233 -----HNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---SSGASQVKAVYVKNLP 284
+H E + + ++G P S D + S G S + VYV L
Sbjct: 194 GDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLD 253
Query: 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344
NV++D+L+K F +G + V +P K + GFV F R+ A +AL+ +
Sbjct: 254 PNVSEDELRKAFAKYGDVASVKIPLGK------QCGFVQFVSRTDAEEALQGLNGSVIGK 307
Query: 345 QALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLA 384
QA+ S + + ++S S S + ++ P + GYG A
Sbjct: 308 QAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGYGYA 347
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 56 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 174
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 175 LSCKVAQD--ENGNSKGYGFVHYETDEAAHQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 230
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ + D+ ++LFE +G IT + + G+ + GFV+F
Sbjct: 231 SKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG-FGFVNFT 289
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA++ + GQ L A+
Sbjct: 290 THESAAKAVEELHGKDFRGQDLYVGRAQ 317
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I +AS+ + R+ + G++T + + ++ +
Sbjct: 224 IPKKDRQSKFEEMKA---NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQE-GK 279
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E A+KA+++L+ +F+G+ + +Q K+
Sbjct: 280 SRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 339
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + E L+++ +E GP +T ++++D
Sbjct: 340 KYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 378
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + ++ +KG+ FV + E A +AI +N KK+
Sbjct: 164 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGH 222
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI ++ +++ + G +T L +D + S
Sbjct: 223 HIPKKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYG-DITSSSLARDQEGKS- 280
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+ A + +++ +F+ G + V A ++ ++
Sbjct: 281 -RGFGFVNFTTHESAAKAVEELHGKDFR-GQDL-YVGRAQKKHEREEELRKSYEAARLEK 337
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL +V ++L+++F G IT V
Sbjct: 338 ANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 375
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 17/248 (6%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L + SIG+V +R+ + + + G+A+V + N +A++ LN T KG+ R
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 178 SQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAF 229
SQ + +FI N+ ++ L + G + ++ +D N++G+ F
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NILSCKVAQD--EYGNSKGYGF 118
Query: 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPR 285
+ Y + A + + + L V + S ++KA +YVKN+ +
Sbjct: 119 VHYETAEAATNAIKHVN--GMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQ 176
Query: 286 NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345
+VT ++ + LFE +G IT + + GFV+F++ +A A++ +YEL GQ
Sbjct: 177 DVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQ 236
Query: 346 ALECSLAK 353
L A+
Sbjct: 237 KLYVGRAQ 244
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + D ++ + R + G++T + + ++ +
Sbjct: 150 IAKKDRQSKFEEMKA---NFTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGK 206
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + E AS A++ LN E KG+K+ +Q K+
Sbjct: 207 SRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 247
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 29 TSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 88
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + + L S G + +
Sbjct: 89 VLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-SILSCK 147
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D +S ++G+ F+++ N + A + +K+ N L + R + G
Sbjct: 148 VALD--SSGQSKGYGFVQFDNEESALKAIEKL---NGMLLNDKQVYVGPFLRKQERDGVV 202
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
S+ V+VKNL T++ L K F G +T +VV G+ + GFV+F A
Sbjct: 203 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRC-FGFVNFENADDA 261
Query: 331 MKAL 334
+A+
Sbjct: 262 ARAV 265
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ N L + ++VG V V + +D+ + + G+ ++ Y N + A +
Sbjct: 31 LYVGDLDLNVTDSQLYDIFNQVGQ-VVSVRVCRDL-TTRRSLGYGYVNYSNPQDAARALD 88
Query: 244 KMTNPNFKLGTNAPT---VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ NF P S DP ++ SGA + ++KNL + + L F G
Sbjct: 89 VL---NFTPLNGKPIRVMYSHRDP-SIRKSGAGNI---FIKNLDKAIDHKALHDTFSAFG 141
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
I V GQ K GFV F SA+KA++ L+
Sbjct: 142 SILSCKVALDSSGQSKG-YGFVQFDNEESALKAIEKLNGMLLN 183
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 26/151 (17%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V++ + +E DL G +T + +M+ D +++ F FV F N + A++A+D
Sbjct: 208 NNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADG-KSRCFGFVNFENADDAARAVD 266
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
LN K+ +Q K L+I N+ + G +
Sbjct: 267 TLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDK 326
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
L+++ + G +T ++++D S GF
Sbjct: 327 LKELFAPFGT-ITSCKVMRDPNGISRGSGFV 356
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 26/238 (10%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L D G+V +R+ + S + G+ +V + NV A++AI+
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIE 88
Query: 162 KLNNTEFKGKKIRCSTSQAKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN T GK IR S YR ++I N+ + ++ L S G +
Sbjct: 89 VLNFTPVNGKPIRIMYS---YRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFG-SIL 144
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ D S G+ F+++ N + A+ + K+ N L + R +
Sbjct: 145 SCKVATDSLGQS--LGYGFVQFDNEESAKNAIDKL---NGMLLNDKQVYVGPFLRKQERE 199
Query: 271 GA---SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHF 324
A + VYVKNL T++ LKK+F +G IT VV + G K+R GFV+F
Sbjct: 200 SAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVV--MRDGNGKSRCFGFVNF 255
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 113/279 (40%), Gaps = 39/279 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162
+YI + L D + G + ++ DS ++ G+ FV F N E A AIDK
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKV--ATDSLGQSLGYGFVQFDNEESAKNAIDK 176
Query: 163 LNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
LN K++ + +A + +++ N+ EDL+K+ E G +T
Sbjct: 177 LNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYG-TIT 235
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADPR 265
+++D + +R F F+ + N A S + + F +G R
Sbjct: 236 SAVVMRD--GNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGK----AQKKSER 289
Query: 266 NVDSSG-----------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
V+ G Q +YVKNL ++T D+LK+LF G IT V G
Sbjct: 290 EVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ GFV F+ A +AL + + L +LA+
Sbjct: 350 SRGS-GFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQ 387
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 21/290 (7%)
Query: 78 GDMQIEDEDEKKKHAELLALPPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
G+ Q D D A P S +Y+G + +E L + IG V +R+ +
Sbjct: 40 GEYQTADPDTAGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRD 99
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGN 188
+ + G+A+V + + KA+++LN T KG+ R SQ + +FI N
Sbjct: 100 TITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 159
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++ L + G + ++ +D + N++G+ F+ Y + A + + +
Sbjct: 160 LDVAIDNKALHDTFAAFG-NILSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN-- 214
Query: 249 NFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITK 304
N L V + P+ S ++KA +YVKN+ T ++ + LF +G +T
Sbjct: 215 NMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTS 274
Query: 305 VVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ A+ + K+R GFV+F A KA++ E GQ L A+
Sbjct: 275 SSL--ARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQ 322
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E A++AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 164 NNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
NN KK+ Q+K+ +++ NI E+ + + ++ G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+CA + +++ F+ G + V A ++
Sbjct: 273 TSSSLARDSEGKS--RGFGFVNFTTHECAAKAVEELNGKEFR-GQDL-YVGRAQKKHERE 328
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ D+L+++F +G IT V
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
Q+ L++G + + L ++ S++G V + + +D + + G+A++ Y++
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDTI-TRRSLGYAYVNYNSTSDG 119
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L P + W+ DP + +G V ++KNL + L
Sbjct: 120 EKALEEL---NYTLIKGRPCRIMWSQRDPA-LRKTGQGNV---FIKNLDVAIDNKALHDT 172
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 356 ADQKS 360
D++S
Sbjct: 232 KDRQS 236
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 120/278 (43%), Gaps = 22/278 (7%)
Query: 98 PPHGSEV--YIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
P GS V Y+G + +E L D V VRI K + + G+A+V F + E
Sbjct: 25 PSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHED 84
Query: 156 ASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
A A++ N T GK IR S LFI N+ N ++ L ++ S G
Sbjct: 85 AKVALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFG- 143
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP--- 264
+ ++ D+ S +G+ F+++ + E ++ M N KL + D
Sbjct: 144 IILSCKVATDLNGKS--KGYGFVQFVSE---ESAKDAMNALNGKLANGNGKQLYVDLFIR 198
Query: 265 --RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
GAS+ VY KNLP+ T D L ++F G IT VV G+ K GFV
Sbjct: 199 REERQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKC-FGFV 257
Query: 323 HFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
++ + A +A++ + AL AK + ++++
Sbjct: 258 NYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQA 295
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 124/311 (39%), Gaps = 58/311 (18%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFI-------------- 186
++KG+ FV F + E A A++ LN GK + Q LFI
Sbjct: 157 KSKGYGFVQFVSEESAKDAMNALN-----GKLANGNGKQLYVDLFIRREERQHIGGASKF 211
Query: 187 -----GNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
N+P+ + +DL +V + G +T ++KD S + F F+ Y + AE +
Sbjct: 212 TNVYTKNLPKEFTDDDLCRVFAPFG-TITSAVVMKDGDGES--KCFGFVNYEKTEYAEEA 268
Query: 242 RQKMTNPNFKLGTN-APTVSWA--------------DPRNVDSSGASQVKAVYVKNLPRN 286
+K+ N K+ ++ A V A D D S+ +Y+KNL +
Sbjct: 269 VEKL---NGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCS 325
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
+ + L+ LF I V G+ K GFV F +A KA+ + +L G
Sbjct: 326 IDDEYLRNLFGRFDDIGTCKVMVDSEGRSKG-FGFVLFTTIEAANKAVSXRNERKLVGTK 384
Query: 347 LECSLAKPQADQKSAGGSV---------SEKPSLLQNYPP---HIGYGLAGGTYGALGAG 394
L + +++SA + + P++ QN P + GYG+ G G
Sbjct: 385 LLYVCVAQRKEERSAILAAQFARRHMVGARTPAMPQNIAPRPFYFGYGVPGVLVRPQATG 444
Query: 395 FGAAAFAQTTV 405
FG + Q +
Sbjct: 445 FGYQQYPQPVI 455
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T + IR S + +FI N+ + + L S G + +
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG-NILSCK 152
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS-WADPRNVDSSG- 271
+ D S ++G+ F+++ + A+ + +K+ L V + + +S+G
Sbjct: 153 VAVD--GSGQSKGYGFVQFDTEEAAQKAIEKLN--GMLLNDKQVYVGPFLRKQERESTGD 208
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
++ V+VKNL + T D+LKK F G IT VV + G K++ GFV+F A
Sbjct: 209 RAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVV--MRDGDGKSKCFGFVNFESTDDA 266
Query: 331 MKALKNTEKYELD 343
+A++ ++D
Sbjct: 267 ARAVEALNGKKID 279
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 43/310 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D S G + ++ S ++KG+ FV F E A KAI+KL
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAV-DGSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 164 NNTEFKGKKI----------RCSTS-QAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N K++ R ST +AK+ +F+ N+ + ++L+K E G +T
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFG-TITS 241
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN----- 266
+++D S + F F+ + + A + + + K+ V A ++
Sbjct: 242 AVVMRDGDGKS--KCFGFVNFESTDDAARAVEALNGK--KIDDKEWYVGKAQKKSEREHE 297
Query: 267 ---------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+++ Q +YVKNL ++ ++LK+LF +G IT V G +
Sbjct: 298 LKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRG 357
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGS-------VSEKPS 370
GFV F+ A +AL + + L +LA+ + D+++ + VS PS
Sbjct: 358 S-GFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPS 416
Query: 371 L---LQNYPP 377
+ + YPP
Sbjct: 417 VAPRMPMYPP 426
>gi|413922759|gb|AFW62691.1| hypothetical protein ZEAMMB73_026342 [Zea mays]
Length = 430
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 136/310 (43%), Gaps = 40/310 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++G + + E+ L S GEV +++++ + S ++G+ F+ F A KA+
Sbjct: 106 IWVGDLQYWMDENYLHSCFGSSGEVVNIKVIRNRHSGVSEGYGFIEFYTHVSAEKALQNF 165
Query: 164 N-----NTEFKGKKIRCSTSQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGVT 210
+ NT+ K S S + R +F+G++ + L ++ S V
Sbjct: 166 SGHVMPNTDRAFKLNWASYSMGEKRSEISSDHSIFVGDLAVDVTDAMLLELFSNKYRSVK 225
Query: 211 GVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWAD-- 263
G +++ D N+ +RG+ F+ + + H E + + ++G P S D
Sbjct: 226 GAKVIID-ANTGRSRGYGFVRFGDDNDKIHAMTEMNGVYCSTRPIRVGPATPRRSQGDSG 284
Query: 264 ---PR--NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
PR +VDS+ + VYV L NV++D+L+K F +G + V +P K +
Sbjct: 285 TSPPRQSHVDSTN----RTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPFGK------Q 334
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEK----PSLLQN 374
GFV F R A +AL + QA+ S + A ++S G S + +
Sbjct: 335 CGFVQFVNRVDAEEALHGLNGSTIGKQAVRLSWGRSPASKQSRGDSGHRRNGNCNGMYYG 394
Query: 375 YPPHIGYGLA 384
P + GYG A
Sbjct: 395 TPFYGGYGYA 404
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 28/284 (9%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN---VE 154
P H S +Y+G + D +E L + IG V +R+ + + + G+A+V + +
Sbjct: 20 PVHNSSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAA 79
Query: 155 LASKAIDKLNNTEF----------KGKKIRCSTSQAKYR------LFIGNIPRNWGSEDL 198
A +AI+ LN T K +I S +R +FI N+ ++ ++ L
Sbjct: 80 AAERAIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVGNIFIKNLDKDIDNKAL 139
Query: 199 QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNA 256
+ G + ++ D+ + N++G+ F+ Y + A+ + +K+ K
Sbjct: 140 HDTFTAFG-TILSCKVATDL--AGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVG 196
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
P + + R VD V+VKNL N+T ++++K+F HG +T + + G+ K
Sbjct: 197 PFLKRTE-RPVDKE--QHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSK 253
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GF++F + A A+ E+DG+ L C A+ +A++++
Sbjct: 254 G-FGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREA 296
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 30/274 (10%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSEN-KGFAFVTFRNVELASKAIDK 162
++I + D L D + G + ++ D + N KG+ FV + E A AI+K
Sbjct: 125 IFIKNLDKDIDNKALHDTFTAFGTILSCKV--ATDLAGNSKGYGFVHYEKEEAAQLAIEK 182
Query: 163 LNNTEFKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
+N +GKK+ R + Y +F+ N+ N E+++K+ +E G VT
Sbjct: 183 VNGMLLEGKKVFVGPFLKRTERPVDKEQHYTNVFVKNLSENLTDEEVEKMFNEHG-MVTS 241
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAPTV 259
++KD + ++GF FI + + + A + + K A
Sbjct: 242 FAIMKD--EAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELK 299
Query: 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
D + Q +YVKNL V DQL+ F HG IT V G+ K
Sbjct: 300 QKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKG-F 358
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV ++ A +A+ L G+ + +LA+
Sbjct: 359 GFVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQ 392
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + + LR G +T ++MK + ++KGF FV + + E A++A
Sbjct: 314 QGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMK-DSAGKSKGFGFVCYSSPEEATRA 372
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q +
Sbjct: 373 VTEMNGKMLLGKPMYVALAQRR 394
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P H + +Y+G + D +E L + +G V +R+ + + + G+A+V F NV A
Sbjct: 38 PYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAE 97
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
+A+D +N T K + R SQ L F+ N+ ++ L S G +
Sbjct: 98 RALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFG-NI 156
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D ++ ++G+ ++ Y A + K+ N G + R +
Sbjct: 157 LSCKVATD--DAGESKGYGYVHYEGGVSANMAIAKI-NGMLIAGKQVHVGHFV--RRDNR 211
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQ------------- 314
+G + +YVK LP + +L++ FE HG +T KV V P + GQ
Sbjct: 212 AGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQE-GQGDESKEKGKGGEG 270
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYEL-DGQA---LECSLAKPQADQ 358
+ GFV+F E SA+KA++ E+ DG+ L C+ A+ ++++
Sbjct: 271 KSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSER 318
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 115/289 (39%), Gaps = 41/289 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + L D G + ++ D+ E+KG+ +V + A+ AI K+
Sbjct: 132 IFVKNLDETVDNKALYDTFSLFGNILSCKVAT-DDAGESKGYGYVHYEGGVSANMAIAKI 190
Query: 164 NNTEFKGKKIRCS--------TSQAKY-RLFIGNIPRNWGSEDLQK-------VVS---E 204
N GK++ QA + L++ +P +W L++ V S +
Sbjct: 191 NGMLIAGKQVHVGHFVRRDNRAGQADWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQ 250
Query: 205 VGP--GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
V P G K +RGF F+ + H+ A + + + N G T+ A
Sbjct: 251 VAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCA 310
Query: 263 DPRNVD------SSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRIT--K 304
+ S QVK VYVKNL VT+D +++ F +G IT +
Sbjct: 311 RAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSAR 370
Query: 305 VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
V+V + Q K GFV F+ A KA+ L + + +LA+
Sbjct: 371 VMVDNSNNNQSKG-FGFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQ 418
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIM-KGKDSSENKGFAFVTFRNVELASK 158
G VY+ + +E +R+ G +T R+M +++++KGF FV F E A+K
Sbjct: 338 QGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATK 397
Query: 159 AIDKLNNTEFKGKKIRCSTSQAK 181
AI ++N K I + +Q +
Sbjct: 398 AITEMNGKMLLNKPIYVALAQRR 420
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D S +G+ F+ Y + AE + + + N L + +S D +
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFS 271
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI E+ +K+ + G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 250 TSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +YI I + + + R + GE+T + +DS
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATL--SRDSEG 260
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 19/265 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L D IG V+ +R+ + + + G+A+V F + E +AI+
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
KLN T KG+ R SQ L FI N+ + ++ L S G + +
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFG-NILSCK 158
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN-----APTVSWADPRNVD 268
+ D + + N++GF F+ + + + A R+ + N L AP VS D ++
Sbjct: 159 IATD-EVTGNSKGFGFVHFESDEAA---REAIDAINGMLLNGQEVYVAPHVSRKDRQSKL 214
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ VY+KN+ + + ++ F+ +T V + G+ + GFV++ +
Sbjct: 215 EEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRG-FGFVNYETHA 273
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
A KA++ E GQ L A+
Sbjct: 274 GAAKAVEELNGVEFHGQQLHVGRAQ 298
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + + LR+ G +T V++M ++ ++KGF FV F E A+KA
Sbjct: 323 QGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMT-TENGKSKGFGFVCFSTPEEATKA 381
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 382 ITEKNQQIVAGKPLYVAIAQRK 403
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 165 NTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNN 224
+T+ +K+ ST+ L++G + L + S +G V+ + + +D ++
Sbjct: 27 STDSDSQKVETSTAS----LYVGELDPTVSEALLYDIFSPIG-SVSSIRVCRDAITKTS- 80
Query: 225 RGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVK 281
G+A++ ++++ E RQ + N+ P + W+ DP ++ G+ + ++K
Sbjct: 81 LGYAYVNFNDY---EAGRQAIEKLNYTPIKGQPCRIMWSQRDP-SLRKKGSGNI---FIK 133
Query: 282 NLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341
NL ++ L F G I + + GFVHF +A +A+
Sbjct: 134 NLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGML 193
Query: 342 LDGQALECSLAKPQADQKS 360
L+GQ + + + D++S
Sbjct: 194 LNGQEVYVAPHVSRKDRQS 212
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 17/274 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P H + +Y+G I D +E L + ++G V +R+ + + + G+A+V F NV A
Sbjct: 41 PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAE 100
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
+A+D +N T KG R SQ L F+ N+ + ++ L S G +
Sbjct: 101 RALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFG-NI 159
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ + + N++G+ ++ Y + A + K+ N GT + + D
Sbjct: 160 LSCKVAIE-HTTGNSKGYGYVHYETAEAATEAIAKI-NGMLIAGTEVFVGQFQ--KRQDR 215
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
A YVKN+P T L K FE G++ VV + NR GFV++ E
Sbjct: 216 PDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESD 275
Query: 329 SAMKALK--NTEKYELDGQALECSLAKPQADQKS 360
+A KA+ N + Y G+ L+ + +A ++S
Sbjct: 276 AAHKAVDALNGKSYPA-GEGLDTEMYVGKAQKRS 308
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 42/311 (13%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177
L D G + ++ + +KG+ +V + E A++AI K+N G ++
Sbjct: 149 LYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQ 208
Query: 178 SQAK---------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
Q + ++ NIP W DL K G ++ V ++KD N +NRGF
Sbjct: 209 FQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAV-VMKDNANPDHNRGFG 267
Query: 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPT---VSWADPRN--------------VDSSG 271
F+ Y A + + ++ G T V A R+ ++
Sbjct: 268 FVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERIN 327
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
Q +YVKNL ++ D+L++ F G IT V P GFV F+ A
Sbjct: 328 KYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRV-MRDPNGNSRGFGFVCFSTPEEAN 386
Query: 332 KALKNTEKYELDGQALECSLAK----------PQADQKSAGGSVSEKPSLLQNYPPHIGY 381
KA+ + G+ + +LA+ Q Q+ AG V + Q PP Y
Sbjct: 387 KAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQ--PPM--Y 442
Query: 382 GLAGGTYGALG 392
G A YG G
Sbjct: 443 GAAPMFYGQPG 453
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + S+ +LR+ G +T R+M+ + + ++GF FV F E A+KA
Sbjct: 330 QGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGN-SRGFGFVCFSTPEEANKA 388
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q K
Sbjct: 389 VAEMNGKLISGKPVYVALAQRK 410
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 24/298 (8%)
Query: 68 EEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGE 127
EE+ A A + D E++ E AE + + +Y+G + +E L + IG+
Sbjct: 23 EEQPAAATTTADQSAEEQGESSGVAE------NSASLYVGELNPSVNEATLFEIFSPIGQ 76
Query: 128 VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ-------- 179
V+ +R+ + S ++ G+A+V + E KAI++LN T +G+ R SQ
Sbjct: 77 VSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRS 136
Query: 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+FI N+ ++ L S G + ++ D S + F F+ Y + AE
Sbjct: 137 GDGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVAADEFGQS--KCFGFVHYETAEAAE 193
Query: 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKL 295
+ + + L V + S ++KA +YVKN+ N +++ +KL
Sbjct: 194 AAIENVN--GMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKL 251
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
F +G+IT + + + G+ K GFV+F SA+KA++ E++GQ + A+
Sbjct: 252 FAPYGKITSIYLEKDQDGKSKG-FGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQ 308
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + +S G +T ++M D+ ++KGF FV F E A+KA
Sbjct: 333 QGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMV-DDAGKSKGFGFVCFTTPEEATKA 391
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 392 ITEMNTRMINGKPLYVALAQRK 413
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
gi|297310199|gb|EFH40623.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 43/316 (13%)
Query: 101 GSEV---YIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
GSEV +IG + E+ + GE ++++ K + +++G+ F+ F N +A
Sbjct: 60 GSEVKSLWIGDLQQWMDENYIMSVFNQSGEAQSAKVIRNKLTGQSEGYGFIEFINHSVAE 119
Query: 158 KAIDKLNNTEFKG--KKIRCSTSQA------------KYRLFIGNIPRNWGSEDLQKVVS 203
+ + N + + R + +QA + +F+G++ L
Sbjct: 120 RVLQTYNGAQMPSTEQTFRLNWAQAGAGEKRHQTEGPDHTIFVGDLAPEVTDYMLSDTFK 179
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLG----T 254
V V G ++V D + + ++G+ F+ + + E + Q + ++G
Sbjct: 180 NVYGSVKGAKVVVD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 238
Query: 255 NAPTVSWADPRNVDSSGASQV----KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310
NA + A +N A ++V L NVT D+LK +F G + V +PP
Sbjct: 239 NALPMQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG 298
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK-----PQADQKSAGGSV 365
K R GFV +A R++A AL +L GQ++ S + P Q + GG
Sbjct: 299 K------RCGFVQYANRATAEHALSVLNGTQLGGQSIRLSWGRSPNKQPDQAQWNGGGYY 352
Query: 366 SEKPSLLQNYPPHIGY 381
P Y P+ GY
Sbjct: 353 GYPPQPQGGYEPY-GY 367
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMN--GMLLNDRKVFVGHFKSRREREVELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNL +V + +L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ N E+ G+ L A+ + ++++
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ EL A + +Y+ + D E L+D G++ V++M+ DS ++G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMR-DDSGHSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR 183
F FV F E A KA+ +N E G+ + +Q +Y+
Sbjct: 233 FGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQ 292
Query: 184 ---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L+K S G + K M +++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 9/148 (6%)
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RN 266
G+ V L + NRGF F+EY +HK A +R+++ + K+ N TV WADP
Sbjct: 8 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 67
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
D ++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +
Sbjct: 68 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFED 119
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKP 354
R +A+KA+ E++G+ +E LAKP
Sbjct: 120 RGAAVKAMDEMNGKEIEGEEIEIVLAKP 147
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 9/148 (6%)
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RN 266
G+ V L + NRGF F+EY +HK A +R+++ + K+ N TV WADP
Sbjct: 3 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 62
Query: 267 VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
D ++VK ++V+NL VT++ L+K F G++ +V ++ FVHF +
Sbjct: 63 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFED 114
Query: 327 RSSAMKALKNTEKYELDGQALECSLAKP 354
R +A+KA+ E++G+ +E LAKP
Sbjct: 115 RGAAVKAMDEMNGKEIEGEEIEIVLAKP 142
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 24/282 (8%)
Query: 95 LALPPHGS----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
+ PP+ + +YIG + D SE L + G V +R+ + S + G+A+V F
Sbjct: 46 IGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105
Query: 151 RNVELASKAIDKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVV 202
+ A +A+D +N G+ +R SQ A R +FI N+ R ++ +
Sbjct: 106 QQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF 165
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
S G + ++ D + N++G+ F+ + A+ + +K+ L V
Sbjct: 166 SLFG-NILSCKVATD--DEGNSKGYGFVHFETEHSAQTAIEKVN--GMLLSDKKVYVGKF 220
Query: 263 DPR--NVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
PR + G S +K V+VKN ++ Q++L +F G IT VV G+ K
Sbjct: 221 QPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKG- 279
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV FA++ +A +A++ L+G +C L+ +A +KS
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEG--TDCKLSVCRAQKKS 319
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 34/252 (13%)
Query: 138 DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYR-------------- 183
D +KG+ FV F A AI+K+N KK+ Q + +
Sbjct: 180 DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTN 239
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
+F+ N + E L + S+ G +T ++ D + +GF F+ + + A + +
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGE-ITSAVVMTDAQGKP--KGFGFVAFADQDAAGQAVE 296
Query: 244 KMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA---------------VYVKNLPRNVT 288
K+ N + GT+ + + S + K +YVKN+ ++
Sbjct: 297 KL-NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLN 355
Query: 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348
D L+ F G IT V + G+ K GFV F + A A+ + + + L
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDENGRSKG-FGFVCFEKPEEATAAVTDMNSKMIGAKPLY 414
Query: 349 CSLAKPQADQKS 360
+LA+ + D+++
Sbjct: 415 VALAQRKEDRRA 426
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ I D ++ LRD S G +T ++M ++ +KGF FV F E A+ A
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV-DENGRSKGFGFVCFEKPEEATAA 399
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ +N+ K + + +Q K
Sbjct: 400 VTDMNSKMIGAKPLYVALAQRK 421
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + D +E L + IG + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR S +FI N+ + ++ L S G ++
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-- 128
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS--G 271
K + N +RGF F+ + H+ A+ + M L V R + G
Sbjct: 129 --KVVYNEHGSRGFGFVHFETHEAAQKAINTMN--GMLLNDRKVFVGHFKSRQKREAELG 184
Query: 272 ASQV--KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + +YVKNL ++ + L+ LF G+ V V GQ + GF++F +
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRG-FGFINFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ GQ L A+ +A++++
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 120/284 (42%), Gaps = 35/284 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D + G + +++ + S +GF FV F E A KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGS--RGFGFVHFETHEAAQKAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAKYR--------------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ + +++ N+ + + LQ + S+ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGK-- 216
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRN 266
+ VK M++S+ +RGF FI + H+ A+ + M +L A+ +N
Sbjct: 217 --TQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
Query: 267 VDSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
Q+K +YVKNL ++ D+LK++F +G IT V
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKV--MTESSHS 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +K+ AEL A + +Y+ + D E L+D G+ V++M+ + +++G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F F+ F E A KA+D +N E G+ + +Q +
Sbjct: 233 FGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + + L++V S G + K M SS+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGV----ITSAKVMTESSHSKGFGFVCF 340
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + ++ L++ + G +T ++M +SS +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
RL++ NIP+ ED+ + G+ V +V S+ NRGF FIE+++ K A +++
Sbjct: 157 RLYVANIPKVKTKEDIFNHFNRFLGGLVDV-MVYTYPGSTQNRGFCFIEFNSSKNAMFAK 215
Query: 243 QKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG- 300
+ + G V WADP + D VK +Y+KNL VT L++ F G
Sbjct: 216 ETIVASR-PWGCEV-VVDWADPEQEPDEEIMKSVKVLYIKNLSPRVTDADLRRAFAERGL 273
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354
++ +V V FVHF RS A KA+K + LD L+ S AKP
Sbjct: 274 QVERVKV--------IRDFAFVHFFTRSLAEKAMKVCQNLTLDDLPLQVSWAKP 319
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V F N + A++A+D
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T K IR S +FI N+ + + L S G + +
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFG-QIMSCK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F+++ A+ + K+ N K + D NV S
Sbjct: 151 IATD--GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSK- 207
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
++ VYVKNL + T+D LK F +G IT V+ G+ K GFV+F A
Sbjct: 208 -TKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKC-FGFVNFENAEDAA 265
Query: 332 KALKNTEKYELD 343
KA++ ++D
Sbjct: 266 KAVEALNGKKVD 277
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D S +G+ F+ Y + AE + + + N L + +S D +
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFS 271
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI E+ +K+ + G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 250 TSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +YI I + + + R + GE+T + +DS
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATL--SRDSEG 260
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 119/257 (46%), Gaps = 23/257 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L + G+V VR+ + +S + G+A+V + N A++A++
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 162 KLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN K IR S +FI N+ + ++ L S G ++
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 241
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV---DSS 270
+ D+ S +GF F++Y + A+ + M + N L + P R +SS
Sbjct: 242 AMDDIGQS---KGFGFVQYEKEESAQSA---MKSLNGMLINDKPVYVGPFLRKQERDNSS 295
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
++ V+VKNL + T++ L K+F +G IT VV G+ + GFV+F A
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRC-FGFVNFESPDDA 354
Query: 331 MKALKNTEKYELDGQAL 347
+A++ EL+G+ +
Sbjct: 355 ARAVE-----ELNGKKI 366
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 133/310 (42%), Gaps = 39/310 (12%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + ++ D ++KGF FV + E A A+
Sbjct: 210 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM-DDIGQSKGFGFVQYEKEESAQSAMK 268
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN K + S+ +AK+ +F+ N+ + EDL KV SE G +
Sbjct: 269 SLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYG-TI 327
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLG-TNAPTVSWAD 263
T ++ M S R F F+ + + A E + +K+ + + +G + D
Sbjct: 328 TSAVVMIGMDGKS--RCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMD 385
Query: 264 PRNV------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ D++ Q + +Y+KNL +T DQL++LF + G+IT + + G K
Sbjct: 386 LKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKG 445
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPS 370
GFV F+ R A +AL + G+ L + A+ + ++K S V PS
Sbjct: 446 S-GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPS 504
Query: 371 L---LQNYPP 377
+ L YPP
Sbjct: 505 MTPRLPMYPP 514
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + ++ LR+ + G++T +IM+ ++ +KG FV+F E AS+A
Sbjct: 402 QGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGV-SKGSGFVSFSTREEASQA 460
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N GK + + +Q K
Sbjct: 461 LTEMNGKMISGKPLYVAFAQRK 482
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 14/265 (5%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + IG V +R+ + + + G+A+V + N++ +
Sbjct: 35 PQSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGER 94
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN + K + R SQ + +FI N+ ++ L + G V
Sbjct: 95 ALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG-NVL 153
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVD 268
++ D + N+RG+ F+ Y N + A + Q + N K VS + +
Sbjct: 154 SCKVATD--ENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKI 211
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
SQ V++KNL +V ++ K++ E +G I VV + G + GFV++
Sbjct: 212 DEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRG-FGFVNYKNHE 270
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
A KA+++ + E+DG+ + + A+
Sbjct: 271 EAAKAVESLNEVEVDGKKIFAARAQ 295
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 39/280 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ ++ ++G+ FV + N E AS AI +
Sbjct: 128 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVAT-DENGNSRGYGFVHYENGESASAAIQHV 186
Query: 164 NNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ QAK +FI N+ + E ++++ G +
Sbjct: 187 NGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEIL 246
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----- 264
+ V + KD N+RGF F+ Y NH+ A + + + ++ + + A
Sbjct: 247 SAV-VQKD--EQGNSRGFGFVNYKNHEEAAKAVESLN----EVEVDGKKIFAARAQKKNE 299
Query: 265 ------RNVDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
RN + + ++ +YVKNL + ++L FE G IT + + G
Sbjct: 300 REEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEKG 359
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + L SLA+
Sbjct: 360 TSKG-FGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQ 398
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 51 EEEEEVIEEEVEEEVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPH-GSEVYIGGI 109
EE + +E E EV+ ++ A + + + E+ + A+L L + G +Y+ +
Sbjct: 270 EEAAKAVESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNL 329
Query: 110 PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169
D + L + G +T +IM+ + + +KGF FV F + + A+KA+ +L+
Sbjct: 330 DDDFDDERLVGEFEPFGTITSAKIMRDEKGT-SKGFGFVCFSSPDEATKAVSELSGKMIG 388
Query: 170 GKKIRCSTSQAK 181
K + S +Q +
Sbjct: 389 SKPLYVSLAQRR 400
>gi|242033859|ref|XP_002464324.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
gi|241918178|gb|EER91322.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
Length = 409
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 126/288 (43%), Gaps = 42/288 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GEV V+I++ K + + +G+ F+ F N LA + +
Sbjct: 74 LWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFGNHALAEQVLQNY 133
Query: 164 N-------NTEFKGKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVSEVGP 207
N N F K+ +TS A Y +F+G++ + LQ P
Sbjct: 134 NGQMMPNVNQPF---KLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYP 190
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLGTNA------ 256
V ++V D + + ++G+ F+++ E + Q ++ +LG +
Sbjct: 191 SVKSAKVVFD-RTTGRSKGYGFVKFADLDEQTRAMTEMNGQYCSSRPMRLGPASNKKNTG 249
Query: 257 -----PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311
+ + + + DS V+V L +VT + LK+ F +G + V +P K
Sbjct: 250 GQPQPSSTIYQNTQGTDSDSDPNNTTVFVGGLDPSVTDELLKQTFSPYGELLYVKIPVGK 309
Query: 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
R GFV ++ R+SA +A++ +L GQ++ S + A+++
Sbjct: 310 ------RCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPANKQ 351
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D IG V VR+ + S ++ G+A+V + A++A++
Sbjct: 125 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 184
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G+ IR S +FI N+ ++ ++ L G + +
Sbjct: 185 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFG-NILSCK 243
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN--PNFKLGTNAPTVSWADPRNVDSSG 271
+ D S +G+ F++Y + A + +K+ N K P V + N S G
Sbjct: 244 VATDPAGES--KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN--SPG 299
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ + VYVKNL T+D LK++F G IT VVV G+ K GFV+F A
Sbjct: 300 SVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKC-FGFVNFESPDEAA 358
Query: 332 KALKN 336
A+++
Sbjct: 359 LAVQD 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 31/284 (10%)
Query: 102 SEVYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ ++I + L D FC G + ++ + E+KG+ FV + E A AI
Sbjct: 213 ANIFIKNLDKSIDNKALHDTFC-VFGNILSCKVAT-DPAGESKGYGFVQYERDEAAHAAI 270
Query: 161 DKLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPG 208
+KLN KK+ S K+ +++ N+ +DL+++ + G
Sbjct: 271 EKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFG-T 329
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAP 257
+T V +++D ++ F F+ + + A + Q + F K
Sbjct: 330 ITSVVVMRD--GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREM 387
Query: 258 TVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ +N+ +++ Q +Y+KNL V ++L++LF G IT V G +
Sbjct: 388 ELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASR 447
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 448 GS-GFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKA 490
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L S G + +
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG-NILSCK 136
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S ++G+ F+++ N + A+ + K+ N L + R + A
Sbjct: 137 IATD--PSGQSKGYGFVQFDNEESAQNAIDKL---NGMLINDKQVYVGQFLRKQERETAL 191
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHF 324
++ VYVKNL + T++ LK +F G IT VVV + G K++ GFV+F
Sbjct: 192 NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV--MRDGDGKSKCFGFVNF 244
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 54/340 (15%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + +I S ++KG+ FV F N E A AID
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIAT-DPSGQSKGYGFVQFDNEESAQNAID 164
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ + ++ K+ +++ N+ + EDL+ + E G +
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI-I 223
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADP 264
T V +++D S + F F+ + N A + + + F +G
Sbjct: 224 TSVVVMRDGDGKS--KCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYE---- 277
Query: 265 RNVDSSG-----------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
R ++ G Q +Y+KNL ++ D+LK+LF G IT V G
Sbjct: 278 RELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSG 337
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVS 366
+ GFV F+ A +AL + + L +LA+ + +++ S VS
Sbjct: 338 ISRGS-GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVS 396
Query: 367 EKPSL---LQNYPP-------HIGYGLAGGTYGALGAGFG 396
PS+ + YPP + YG AGFG
Sbjct: 397 MAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFG 436
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L D IG VT +R+ + + + G+A+V F + E AI+
Sbjct: 50 ASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIE 109
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
KLN + KGK R SQ L FI N+ + ++ L S G + +
Sbjct: 110 KLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFG-NILSCK 168
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D + ++GF F+ + A + + L V+ + S
Sbjct: 169 IATD--ETGKSKGFGFVHFEEDNAAVEAVDAIN--GMMLNGREVYVAQHVSKKDRESKLE 224
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+VKA VYVKN+ + +D+ LF +G IT + + G+ + GF++F
Sbjct: 225 EVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRG-FGFINFENHDD 283
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A KA++ E GQ L A+
Sbjct: 284 AAKAVEELNDLEFKGQKLYVGRAQ 307
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 117/276 (42%), Gaps = 31/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + D L D G + +I ++ ++KGF FV F A +A+D +
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIAT-DETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 164 NNTEFKGKKIRCSTSQAK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N G+++ + +K +++ N+ + ++ + S+ GP +
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGP-I 257
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK---LGTNAPTVSW----- 261
T + + KD + RGF FI + NH A + +++ + FK L +
Sbjct: 258 TSIAMEKD--SEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQE 315
Query: 262 ----ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ ++ Q ++VKNL ++ ++L+ F G IT V + G+ KN
Sbjct: 316 LKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKN 375
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + + G+ L ++A+
Sbjct: 376 -FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 410
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 132/272 (48%), Gaps = 21/272 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +A+E L + G V +RI + + + G+A+V F + A +A+D
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ A R +F+ N+ R+ ++ L + S G ++
Sbjct: 70 TMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADPRNVD---- 268
K M + ++G+AF+ + + A + ++M N K+ + P V+ PR
Sbjct: 128 --KVMSDDQGSKGYAFVHFQSQSAANCAIEQM---NGKVINDRPVFVAPFKPRKDREAEL 182
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
S AS+ VY+KN ++ ++L+ +F +G+ V V G+ K GFV F
Sbjct: 183 RSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKG-FGFVSFESHE 241
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+A +A++ +++GQ + A+ + ++++
Sbjct: 242 AAKRAVEEMNGKDMNGQLVFVGRAQKKVERQA 273
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ + L + G++ ++M D +KG+AFV F++ A+ AI+++
Sbjct: 100 VFVKNLDRSVDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQSQSAANCAIEQM 157
Query: 164 NN----------TEFKGKKIRCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N FK +K R + +++ F +N+G E LQ V S G +
Sbjct: 158 NGKVINDRPVFVAPFKPRKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +YVKNL V +QL+K F G IT+V V + G +
Sbjct: 274 ELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMK-EEGYSR 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KAL L +AL +LA+
Sbjct: 333 G-FGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQ 368
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 33/201 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K + AEL + + VYI D + L+ G+ V++M S ++KGF
Sbjct: 175 RKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMT-DSSGKSKGFG 233
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK------------------------Y 182
FV+F + E A +A++++N + G+ + +Q K
Sbjct: 234 FVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGV 293
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+L++ N+ E L+K S G + VK MK +RGF I + + E +
Sbjct: 294 KLYVKNLDDTVDDEQLRKEFSSFGS----ITRVKVMKEEGYSRGFGLICFSS---PEEAA 346
Query: 243 QKMTNPNFK-LGTNAPTVSWA 262
+ +T N + LG+ A +++ A
Sbjct: 347 KALTEMNGRVLGSKALSIALA 367
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 7/252 (2%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + DA+E L G V +RI + + G+A+V F A KA+D
Sbjct: 122 ASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALD 181
Query: 162 KLNNTEFKGKKIRCSTSQAKYRLF---IGN-IPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
+N +GK IR SQ L +GN I +N K + E G + K
Sbjct: 182 TMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSKV 241
Query: 218 MKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNVDSSGASQV 275
M + ++G+AF+ + + A+ + Q+M + AP S D + S+
Sbjct: 242 MSDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTSEF 301
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
VYVKN ++ ++L+ +F +GR V V G+ K GFV F +A KA++
Sbjct: 302 TNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVE 360
Query: 336 NTEKYELDGQAL 347
+++GQ +
Sbjct: 361 EMNGKDINGQLV 372
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 41/282 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V I + L + G + ++M D +KG+AFV F++ A AI ++
Sbjct: 212 VIIKNLDRSVDNKTLYEHFSGFGRILSSKVMS--DDQGSKGYAFVHFQSQSAADCAIQEM 269
Query: 164 NNTEFKGKKI---------------RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
N + +++ R TS+ +++ N + E LQ V S+ G
Sbjct: 270 NGKVIRDRQVLVAPFRSRRDREAELRTRTSEFT-NVYVKNFGEDMDDERLQGVFSKYGRT 328
Query: 209 VTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN- 266
++ VK M +SS ++GF F+ + +H+ A+ + ++M + + V A +
Sbjct: 329 LS----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKD--INGQLVFVGRAQKKEE 382
Query: 267 -----------VDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
+ GA + + V Y+KNL V D+L++ F G I++V V + G
Sbjct: 383 RQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKV-MEEEG 441
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
Q K G V F+ A KA+ L + L +LAK Q
Sbjct: 442 QRKG-FGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 33/201 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
+ + AEL + VY+ D + L+ G V++M S ++KGF
Sbjct: 287 RRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMT-DSSGKSKGFG 345
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK------------------------Y 182
FV+F + E A KA++++N + G+ + +Q K
Sbjct: 346 FVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGV 405
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242
+L+I N+ + L++ S G + VK M+ +GF + + + E +
Sbjct: 406 KLYIKNLDDTVDDDRLRRAFSSFG----SISRVKVMEEEGQRKGFGLVCFSS---PEEAA 458
Query: 243 QKMTNPNFK-LGTNAPTVSWA 262
+ MT N + LG+ ++ A
Sbjct: 459 KAMTQMNGRVLGSKPLNIALA 479
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D G+V VR+ + + + G+ +V + N + A++A+D
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ ++ ++ L S G + +
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG-NILSCK 136
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S ++G+ F+++ N + A+ + K+ N L + R + A
Sbjct: 137 IATD--PSGQSKGYGFVQFDNEESAQNAIDKL---NGMLINDKQVYVGQFLRKQERETAL 191
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHF 324
++ VYVKNL + T++ LK +F G IT VVV + G K++ GFV+F
Sbjct: 192 NKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV--MRDGDGKSKCFGFVNF 244
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 47/314 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L D + G + +I S ++KG+ FV F N E A AID
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIAT-DPSGQSKGYGFVQFDNEESAQNAID 164
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
KLN K++ + ++ K+ +++ N+ + EDL+ + E G +
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI-I 223
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-----LGTNAPTVSWADP 264
T V +++D S + F F+ + N A + + + F +G
Sbjct: 224 TSVVVMRDGDGKS--KCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYE---- 277
Query: 265 RNVDSSG-----------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
R ++ G Q +Y+KNL ++ D+LK+LF G IT V G
Sbjct: 278 RELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSG 337
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVS 366
+ GFV F+ A +AL + + L +LA+ + +++ S VS
Sbjct: 338 ISRGS-GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVS 396
Query: 367 EKPSL---LQNYPP 377
PS+ + YPP
Sbjct: 397 MAPSVAPRMPMYPP 410
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 18/219 (8%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + D E +L + S+G V VR+ + + + G+A+V F+N E A +AID L
Sbjct: 178 LYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDVL 237
Query: 164 NNTE---FKGKKIRC-----STSQAKY---RLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
E K K IR SQ + +FI N+ ++ ++ L S G V
Sbjct: 238 QFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGK-VLSC 296
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG- 271
+L D K N+ G+AF+ Y + A+Y KM N G + R +++G
Sbjct: 297 KLATDDKG--NSLGYAFVHYQDANVAKYVISKM-NGMLLNGQKVYVGEFRPRREREATGE 353
Query: 272 -ASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVP 308
+++ VYVKNL ++ T +++ KLF +G IT + +P
Sbjct: 354 LSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSIFIP 392
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + D E+ LR+ G +T +RIM+ + +KGF FV F + + A KA+ ++
Sbjct: 534 LFVKNLSDDVDENRLREEFSRFGTITSLRIMR-DEKGVSKGFGFVAFSHPDEAIKAVTEM 592
Query: 164 NNTEFKGKKIRCSTSQAK 181
N K I + +Q K
Sbjct: 593 NQRIVGQKPIYVALAQRK 610
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK--------------------- 181
+GFAFV F E A+ A++ LN E GK + +Q K
Sbjct: 469 RGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQK 528
Query: 182 ---YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
LF+ N+ + L++ S G +T + +++D K S +GF F+ +
Sbjct: 529 LQDVNLFVKNLSDDVDENRLREEFSRFGT-ITSLRIMRDEKGVS--KGFGFVAF 579
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 126/271 (46%), Gaps = 15/271 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ +Y+G + D +E L ++G V +RI + S + G+ +V F V A KA
Sbjct: 8 RAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKA 67
Query: 160 IDKLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
++ +N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 68 LETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSS 127
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT--NAPTVSWADPRNVDS 269
K M + ++G+ F+ Y + + A+ + ++M + T A S D
Sbjct: 128 ----KVMTDEEGSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++ VY+KN ++ + L+ +F +G+ V V G+ K R GFV F +
Sbjct: 184 EKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK-RFGFVSFDSHKA 242
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A A+++ +++GQ + A+ + ++++
Sbjct: 243 AKNAVEDMNGRDINGQTIFVGRAQKKVERQA 273
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 35/248 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + G++ ++M ++ S KG+ FV +++ A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGS--KGYGFVHYQDQRAADRAIEEM 157
Query: 164 NN----------TEFKGKKIRCSTSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N FK +K R + + K ++I N + E L+ V S+ G +
Sbjct: 158 NGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK MK++S ++ F F+ + +HK A+ + + M + K+ A
Sbjct: 218 S----VKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + A Q +Y+KNL + + L+K F G I +V V + GQ K
Sbjct: 274 ELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ-EAGQSK 332
Query: 317 NRIGFVHF 324
G + F
Sbjct: 333 G-FGLICF 339
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
K + AEL P + VYI D + LR G+ V++MK S ++K F
Sbjct: 175 RKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFG 233
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------------ 182
FV+F + + A A++ +N + G+ I +Q K
Sbjct: 234 FVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAA 293
Query: 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
+L+I N+ E L+K S G + VK M+ + ++GF I + +
Sbjct: 294 KLYIKNLDDTIDDETLRKEFSVFGS----ICRVKVMQEAGQSKGFGLICFFS 341
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 57 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 176 LSCKVAQD--ENGNSKGYGFVHYETDEAAHQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +Y+KN+ + D+ ++LFE +G IT + + G+ + GFV+F
Sbjct: 232 SKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG-FGFVNFT 290
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA++ + GQ L A+
Sbjct: 291 THESAAKAVEELHGKDFRGQDLYVGRAQ 318
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 80/160 (50%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I +AS+ + R+ + G++T + + ++ +
Sbjct: 225 IPKKDRQSKFEEMKA---NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQE-GK 280
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E A+KA+++L+ +F+G+ + +Q K+
Sbjct: 281 SRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 340
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + E L+++ +E GP +T ++++D
Sbjct: 341 KYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 379
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + ++ +KG+ FV + E A +AI +N KK+
Sbjct: 165 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGH 223
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ ++I NI ++ +++ + G +T L +D + S
Sbjct: 224 HIPKKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYG-DITSSSLARDQEGKS- 281
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+ A + +++ +F+ G + V A ++ ++
Sbjct: 282 -RGFGFVNFTTHESAAKAVEELHGKDFR-GQDL-YVGRAQKKHEREEELRKSYEAARLEK 338
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL +V ++L+++F G IT V
Sbjct: 339 ANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 376
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 18/269 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V + N +A++
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + KG+ R SQ + +FI N+ ++ L + G V +
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCK 162
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S +G+ F+ Y + AE + + + L V + R S
Sbjct: 163 VATDEHGRS--KGYGFVHYETAEAAETAIKAVN--GMLLNDKKVYVGYHISRKERQSKLE 218
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA +YVKN VT+++ LF+ G +T V+ G+ + GFV+F
Sbjct: 219 EMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRG-FGFVNFEVHDE 277
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA++ + G+ L S A+ +A++
Sbjct: 278 AQKAVEGLHDLDFKGKKLFVSRAQKKAER 306
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETAEAAETAIKAV 192
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ +++ N E+ + + G V
Sbjct: 193 NGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFG-SV 251
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + +D + +RGF F+ + H A+ + + + + +FK VS A +
Sbjct: 252 TSAVIQRD--DEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFK--GKKLFVSRAQKKAERE 307
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +Y+KNL ++ D+L+ FE G IT V + G
Sbjct: 308 QELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRDEKGTS 367
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + L SLA+
Sbjct: 368 KG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 404
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V + KA++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KG+ R SQ +FI N+ ++ L + G + +
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG-NILSCK 179
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 180 VAQD--EHGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA VYVKN+ VT D+ ++LFE G +T + + G+ + GFV+F +
Sbjct: 236 EMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRG-FGFVNFTTHEA 294
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A KA+ + + GQ L A+
Sbjct: 295 AAKAVDDLNGKDFRGQDLYVGRAQ 318
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + ++ + + +KG+ FV + E AS+AI +
Sbjct: 151 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHV 209
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI ++ +++ + G V
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGE-V 268
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + + RGF F+ + H+ A + + +F+ G + V A ++
Sbjct: 269 TSSSLARDQEGKT--RGFGFVNFTTHEAAAKAVDDLNGKDFR-GQDL-YVGRAQKKHERE 324
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL +V ++L+ +F +G IT V
Sbjct: 325 EELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKV 376
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
QA L++G + + L ++ S++G V + + +D + + G+A++ Y+
Sbjct: 58 QASASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAV-TRRSLGYAYVNYNTTADG 115
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L P + W+ DP + +GA + ++KNL + L
Sbjct: 116 EKALEEL---NYTLIKGRPCRIMWSQRDPA-LRKTGAGNI---FIKNLDAAIDNKALHDT 168
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 169 FAAFGNILSCKVAQDEHGNSKG-YGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK 227
Query: 356 ADQKS 360
D++S
Sbjct: 228 KDRQS 232
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 127/297 (42%), Gaps = 46/297 (15%)
Query: 98 PPHGSEV---YIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
P +G EV +IG + + E+ + + GEV+ V++++ K + +++G+ F+ F
Sbjct: 59 PANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRP 118
Query: 155 LASKAIDKLNNTEFK--GKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVS 203
A + + N T + R + + A Y +F+G++ + LQ+
Sbjct: 119 AAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFR 178
Query: 204 EVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK-------------CAEYSRQKMTNPNF 250
V G ++V D + + +G+ F+++ + C+ SR P
Sbjct: 179 ARYNSVKGAKVVID-RLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCS--SRPMRIGPAA 235
Query: 251 KLGTNAPT----VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306
T+ S+ +P + ++V NL NVT + L+++F +G + V
Sbjct: 236 NKNTSGSQQFSKTSYQNPPGTQNENDPNNTTIFVGNLDSNVTDEHLRQVFSQYGELVHVK 295
Query: 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK------PQAD 357
+P K R GFV F++RS A +AL+ + GQ + S + PQAD
Sbjct: 296 IPAGK------RCGFVQFSDRSCAEEALRILNGTPIGGQNIRLSWGRSPSNKQPQAD 346
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 21/265 (7%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+ +Y+G + +E +L + SIG V VR+ + + + + G+ +V F E A A+
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAM 306
Query: 161 DKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
+LN + G+ IR + K R + + +P + S L+ + G +
Sbjct: 307 GQLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGK-ILSC 365
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNV----D 268
+ V D +S RGF F+ + + K AE + + N G V+ PR
Sbjct: 366 KAVLD--HSGRCRGFGFVHFEDPKVAERAIAE-ANGKDAGGDRKLRVAPFKPRKQREQEQ 422
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
VYVK+L R+ +++L KLFE +G IT + K + GFV+FA+
Sbjct: 423 EERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTE 482
Query: 329 SAMKALKNTEKYE-----LDGQALE 348
+A K ++ E ++ +DG A E
Sbjct: 483 AAQKCVEEGEMHQRDIFYVDGMAFE 507
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 122/267 (45%), Gaps = 17/267 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + + +E +LR S+G + V + + + + + +V F A KA+ L
Sbjct: 21 LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNL 80
Query: 164 NNTEFKGKKIR--------CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N+T KGK +R C+ L++ N+ + S LQ + S+ G + ++V
Sbjct: 81 NHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFG-TILSCKVV 139
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPRNVDSSGA 272
++ S +G+ F+++ + A +R + + KL + V ++ S
Sbjct: 140 EEHGKS---KGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSR-FVKKSERTTATSYDE 195
Query: 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
+ +YVKNL +++TQD +F G I V+ G+ + GFV F A K
Sbjct: 196 LKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRG-FGFVDFESPEDAKK 254
Query: 333 ALKNTEKYELDGQALECSLAKPQADQK 359
A+ Y+L+ + L A+ +A++K
Sbjct: 255 AVDALNGYQLESRTLFVGRAQAKAERK 281
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 133/304 (43%), Gaps = 39/304 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + L+ G + ++++ + ++KG+ FV F + + A A L
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVE--EHGKSKGYGFVQFDSEDSALAARTAL 166
Query: 164 NNTEFKGKKIRCS--------TSQAKY------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
++T K KK+ S T+ Y L++ N+ ++ + + S G +
Sbjct: 167 HDTMLKEKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEII 226
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
+ V +++D S RGF F+++ + + A+ + + ++L + V A +
Sbjct: 227 SAV-IMQDHNGKS--RGFGFVDFESPEDAKKAVDALNG--YQLESRTLFVGRAQAKAERK 281
Query: 266 --------NVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ ++ + KA +YVKNL + D+L++LF G+I V G
Sbjct: 282 KILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYDNGAS 341
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNY 375
+ GFV F+ A KAL G++L ++A+ + D++ A + P Q+
Sbjct: 342 RG-FGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLALQTYFSVP---QSQ 397
Query: 376 PPHI 379
PP++
Sbjct: 398 PPYL 401
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 72 ADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV 131
A A + +Q E +D H E S +Y+ + L++ G++
Sbjct: 276 AKAERKKILQHEYKDIFNTHMEKFK----ASNLYVKNLALCIDNDKLQELFSCSGKIVSA 331
Query: 132 RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++M+ D+ ++GF FV F + E A KA++ LN F+GK + + +Q K
Sbjct: 332 KVMR-YDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCK 380
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGE 114
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D N++G+ F+ Y + A+ + + + L V P+
Sbjct: 174 LSCKVAQD--EHGNSKGYGFVHYETDEAAQQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 229
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ + D+ ++LFE +G IT + + G+ + GFV++
Sbjct: 230 SKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRG-FGFVNYT 288
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA+ + GQ L A+
Sbjct: 289 THESAYKAVDELNGKDFKGQDLYVGRAQ 316
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ + +AS+ + R+ + GE+T + + +D +
Sbjct: 223 IPKKDRQSKFEEMKA---NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GK 278
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV + E A KA+D+LN +FKG+ + +Q K+
Sbjct: 279 SRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKAS 338
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + E L+ + SE GP +T ++++D
Sbjct: 339 KYQGVNLYIKNLDDDVDDEKLRHMFSEFGP-ITSAKVMRD 377
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 125/322 (38%), Gaps = 71/322 (22%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAAQQAIKHV 207
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ N+ ++ +++ G +
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGE-I 266
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D S RGF F+ Y H+ A + ++ +FK G + V A ++
Sbjct: 267 TSSSLARDQDGKS--RGFGFVNYTTHESAYKAVDELNGKDFK-GQDL-YVGRAQKKHERE 322
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV---PPA-- 310
++ + Q +Y+KNL +V ++L+ +F G IT V P+
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDG 382
Query: 311 -----------KPGQEKNRI---------------------GFVHFAERSSAMKALKNTE 338
+P +E N + GFV F+ A KA+
Sbjct: 383 SDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMS 442
Query: 339 KYELDGQALECSLAKPQADQKS 360
+ ++G+ L +LA+ + +KS
Sbjct: 443 QRMINGKPLYVALAQRKDVRKS 464
>gi|363738886|ref|XP_423051.3| PREDICTED: dead end protein homolog 1 [Gallus gallus]
Length = 352
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP GSEVYI +P D E L QS+G++ E R+M S N+GFA+ + + A
Sbjct: 50 PPPGSEVYIAKLPRDLYEDTLIPLFQSVGQLYEFRLML-TFSGLNRGFAYAKYSDQHGAG 108
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KAI LNN E + G+ I S K L + +P +L ++ E G+ G+ L
Sbjct: 109 KAIAALNNWEVQEGRAILVCRSFEKCELSVNGLPATLRRRELDAMLLEATEGLLGLTL-- 166
Query: 217 DMKNSSNNR---GFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP 264
++S R A + Y +H+ A +++ + N L V W P
Sbjct: 167 ---HASPGRKQGKVAVLTYSSHRAAAMAKKALVEGNVGLFKKKVKVEWLKP 214
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + S G + +R+ + + + + G+A V F+ +E A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ R+ S+ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
+V D S +G+ F+ + + AE + +KM N F + R+ + +
Sbjct: 130 VVCDENGS---KGYGFVHFETQEEAERAIEKM-NGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A + VY+KNL ++ ++L+ LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA+ +L+G+ + A+ + ++++
Sbjct: 245 RKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 115/286 (40%), Gaps = 43/286 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + L D + G + +++ D + +KG+ FV F E A +AI+K+
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEEAERAIEKM 158
Query: 164 NNT----------EFKGKKIRCSTSQAKYR----LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N FK ++ R + A+ + ++I N+ + E LQ + S+ GP +
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPAL 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------------- 250
+ V+++ D S ++GF F+ + H+ A + +M +
Sbjct: 219 S-VKVMTD--ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Query: 251 ---KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
K G + D S Q +YVKNL + ++L+K F G IT V
Sbjct: 276 LKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 335
Query: 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G GFV F+ A KA+ + + L +LA+
Sbjct: 336 --TMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 57 IEEEVEEEVEEEEEDADAGKSGDMQI---EDEDEKKKHAELLALPPHGSEVYIGGIPHDA 113
+ E +EE E E + D ++ + + + AEL A + VYI + D
Sbjct: 143 VHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDM 202
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
+ L+ G V++M +S ++KGF FV+F E A KA+D++N + GK+I
Sbjct: 203 DDERLQGLFSKFGPALSVKVMT-DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Query: 174 RCSTSQAK 181
+Q K
Sbjct: 262 YVGRAQKK 269
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S GP + + + +D + + + G+A + + + AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGP-ILSIRVYRD-RTTRRSLGYASVNFQQLEDAERALD 70
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF + P + W+ DP S S V ++VKNL R++ L F G
Sbjct: 71 TM---NFDVIKGKPVRIMWSQRDP----SLRKSGVGNIFVKNLDRSIDSKALYDTFSAFG 123
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V + G + GFVHF + A +A++ L+ + + K + D+++
Sbjct: 124 NILSCKVVCDENGSKG--YGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQA 181
Query: 361 AGGS 364
G+
Sbjct: 182 ELGA 185
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + + +Y+G + +E L + IG V +R+ + + + G+A+V + +
Sbjct: 56 PQNSASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 116 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 174
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 175 LSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 230
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA VYVKN+ T+D ++LFE +G +T + + G+ + GFV+F
Sbjct: 231 SKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRG-FGFVNFT 289
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA KA+ + GQ L A+
Sbjct: 290 THESAAKAVDELNGKDFRGQDLYVGRAQ 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 29/160 (18%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I +A+E D R + G+VT + + ++ +
Sbjct: 224 IPKKDRQSKFEEMKA---NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQE-GK 279
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E A+KA+D+LN +F+G+ + +Q K+
Sbjct: 280 SRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 339
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ + + L+++ SE GP +T ++++D
Sbjct: 340 KYQGVNLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 378
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + ++ +KG+ FV + E A++AI +N KK+
Sbjct: 164 LHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGH 222
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI +D +++ + G VT L +D + S
Sbjct: 223 HIPKKDRQSKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYG-DVTSSSLARDQEGKS- 280
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+ A + ++ +F+ G + V A ++ ++
Sbjct: 281 -RGFGFVNFTTHESAAKAVDELNGKDFR-GQDL-YVGRAQKKHEREEELRKSYEAARLEK 337
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL +V D+L+++F G IT V
Sbjct: 338 ANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKV 375
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 18/274 (6%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
LP + +Y+G + SE L + IG V +R+ + + + G+A+V + N
Sbjct: 44 LPSPSASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 103
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
+A+++LN + KG+ R SQ + +FI N+ ++ L + G
Sbjct: 104 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG-N 162
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
V ++ D + S +G+ F+ Y + AE + + + L V +
Sbjct: 163 VLSCKVATDEQGRS--KGYGFVHYETAEAAETAIKAVN--GMLLNDKKVYVGHHISKKER 218
Query: 269 SSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
S +++A +YVKNL V+ ++ +LFE G +T V+ + G K GFV+F
Sbjct: 219 QSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKG-FGFVNF 277
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
A A+ E +G+ L S A+ +A++
Sbjct: 278 EFHEEAQNAVDGLHDTEYNGRKLFVSRAQKKAER 311
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKK---HAELLALPPH-GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E+E +K HA++ + + G +YI + + + LR + G +T ++M+ +
Sbjct: 310 EREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRDEK 369
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
S +KGF FV F + + A+KA+ ++NN K + S +Q +
Sbjct: 370 GS-SKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQRR 411
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 41/281 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVAT-DEQGRSKGYGFVHYETAEAAETAIKAV 197
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ +++ N+ E+ ++ + G V
Sbjct: 198 NGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFG-NV 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF---KLGTNAPTVSWADPR- 265
T + D N++GF F+ + H+ A+ + + + + KL VS A +
Sbjct: 257 TSAVIQTD--EEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKL-----FVSRAQKKA 309
Query: 266 -------------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
++ Q +Y+KNL + ++L+ FE G IT V +
Sbjct: 310 EREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRDEK 369
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G K GFV F+ A KA+ + + L SLA+
Sbjct: 370 GSSKG-FGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQ 409
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 67/337 (19%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E L GEV ++I++ K + + +G+ FV F + A + +
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 164 NNTEFKGKKIRCSTSQAKY-------------RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T+ G + + A + +F+G++ + LQ+ P V
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 141
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHK-------------CA------------------- 238
G ++V D N+ ++G+ F+++ + C+
Sbjct: 142 GAKVVTD-PNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTIGVQQ 200
Query: 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298
+YS K P T+ P + P + D++ + ++V NL N+T+++LK+ F
Sbjct: 201 QYSLGKAMYPVPAYTTSVPVL----PADYDANNTT----IFVGNLDPNITEEELKQTFLQ 252
Query: 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK-PQAD 357
G I V +P K GFV F R+SA +A++ + + Q + S + P A
Sbjct: 253 FGEIAYVKIPAGK------GCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAK 306
Query: 358 QKSAGGSVSEKPSLLQNYPPHIGYGLAGGTYGALGAG 394
Q P+ Y YG GGTY A G G
Sbjct: 307 QDLTTWGQQVDPNQWSAY-----YGY-GGTYDAYGYG 337
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 23/264 (8%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A P + +Y+G + S+ L + G+V VR+ + S + G+A+V F N
Sbjct: 33 VAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPL 92
Query: 155 LASKAIDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A++A++ LN K IR S +FI N+ + ++ L + S G
Sbjct: 93 DAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFG 152
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
T + M ++GF F++Y + A+ + + + N L + P R
Sbjct: 153 ---TILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSL---NGMLINDKPVFVGPFLRK 206
Query: 267 VD---SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
+ S ++ V+VKNL + T++ L K+F +G IT VV G+ + GF++
Sbjct: 207 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRC-FGFIN 265
Query: 324 FAERSSAMKALKNTEKYELDGQAL 347
F +A +A++ EL+G+ +
Sbjct: 266 FENPDAASRAVQ-----ELNGKKI 284
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 135/336 (40%), Gaps = 48/336 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L + S G + ++ + ++KGF FV + E A AI
Sbjct: 128 ANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAM-DEGGQSKGFGFVQYEKEEAAQNAIK 186
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN K + S + K+ +F+ N+ + EDL K+ E G +
Sbjct: 187 SLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYG-NI 245
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T ++ M S R F FI + N A + Q++ K+ V A ++
Sbjct: 246 TSAVVMIGMDGKS--RCFGFINFENPDAASRAVQELNGK--KINDKEWYVGRAQKKSERE 301
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
D++ Q +Y+KNL ++ DQL++LF + G+IT V + G
Sbjct: 302 MELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLS 361
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS--------AGGSVSE 367
K GFV F+ R A +AL + G+ L + A+ + D+K+ +V
Sbjct: 362 KGS-GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPM 420
Query: 368 KPSL---LQNYPP----HIGYGLAGGTYGALGAGFG 396
P+L L YPP + YG A GFG
Sbjct: 421 TPTLAPRLPMYPPMAPQQLFYGQAPPAMIPPQPGFG 456
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ + S G + +
Sbjct: 71 TMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ +D S ++G+ F+ + + A S K+ L V PR
Sbjct: 130 VAQD--ESGTSKGYGFVHFETEEAANKSIDKVN--GMLLNGKRVFVGKFIPRKEREKELG 185
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VYVKN + + D L+++FE +GRIT V G+ K GFV F + +
Sbjct: 186 EKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKG-FGFVAFEDPEA 244
Query: 330 AMKALKNTEKYEL-DGQALECSLAKPQADQK 359
A KA+ + E+ +G+ L A+ +A+++
Sbjct: 245 AEKAVASLNGKEIVEGKPLFVGRAQKKAERQ 275
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 125/297 (42%), Gaps = 59/297 (19%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +S +KG+ FV F E A+K+IDK+
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQ-DESGTSKGYGFVHFETEEAANKSIDKV 159
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLFIGNIPRNWG---SEDLQKVVSEVGPGVT 210
N GK++ R K + F +N+G S+DL + + E +T
Sbjct: 160 NGMLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRIT 219
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
+++ K+ ++GF F+ + + + AE + + N + P V
Sbjct: 220 SHKVMS--KDDGKSKGFGFVAFEDPEAAEKAVASL---------NGKEIVEGKPLFV--- 265
Query: 271 GASQVKA-------------------------VYVKNLPRNVTQDQLKKLFEHHGRIT-- 303
G +Q KA +YVKN+ N+ ++L+K F G IT
Sbjct: 266 GRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTPFGTITSA 325
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
KV++ + G+ K GFV F+ A KA+ + + L +LA+ + D+K+
Sbjct: 326 KVML---EDGRSKG-FGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKA 378
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ D S+ LR+ + G +T ++M KD ++KGF FV F + E A KA+
Sbjct: 192 TNVYVKNFGEDFSDDLLREMFEKYGRITSHKVM-SKDDGKSKGFGFVAFEDPEAAEKAVA 250
Query: 162 KLNNTEF-KGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSE 196
LN E +GK + +Q K L++ NI N E
Sbjct: 251 SLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDE 310
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+K + G + K M ++GF F+ +
Sbjct: 311 RLRKEFTPFG----TITSAKVMLEDGRSKGFGFVCF 342
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ I + + LR G +T ++M + +KGF FV F + E A+KA
Sbjct: 294 QGVNLYVKNIDDNIDDERLRKEFTPFGTITSAKVML--EDGRSKGFGFVCFSSAEEATKA 351
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 352 VTEMNGRIVGSKPLYVALAQRK 373
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 16/245 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D IG V VR+ + S ++ G+A+V + A++A++
Sbjct: 32 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 91
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G+ IR S +FI N+ ++ ++ L G + +
Sbjct: 92 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 150
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN--PNFKLGTNAPTVSWADPRNVDSSG 271
+ D S +G+ F++Y + A + +K+ N K P V + N S G
Sbjct: 151 VATDPAGES--KGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDN--SPG 206
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ VYVKNL T+D LK++F G IT VVV G+ K GFV+F A
Sbjct: 207 NVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKC-FGFVNFESPDEAA 265
Query: 332 KALKN 336
A+++
Sbjct: 266 LAVQD 270
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 31/284 (10%)
Query: 102 SEVYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ ++I + L D FC G + ++ + E+KG+ FV + E A AI
Sbjct: 120 ANIFIKNLDKSIDNKALYDTFC-VFGNILSCKVAT-DPAGESKGYGFVQYERDEAAHAAI 177
Query: 161 DKLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPG 208
+KLN KK+ S K+ +++ N+ +DL+++ + G
Sbjct: 178 EKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFG-A 236
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAP 257
+T V +++D ++ F F+ + + A + Q + F K
Sbjct: 237 ITSVVVMRD--GDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREI 294
Query: 258 TVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ +N+ +++ Q +Y+KNL V ++L++LF G IT V G +
Sbjct: 295 ELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASR 354
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 355 GS-GFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKA 397
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 74 AGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133
A K + +IE +++ +K+ + A + +Y+ + + LR+ G +T ++
Sbjct: 286 AQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKV 345
Query: 134 MKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
M+ + + ++G FV F++ + AS+A+ ++NN K + + +Q K
Sbjct: 346 MRDSNGA-SRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 392
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 95 LALPPHGS----EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTF 150
+ PP+ + +YIG + D +E L + G V +R+ + S + G+A+V F
Sbjct: 51 IGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 110
Query: 151 RNVELASKAIDKLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVV 202
+ A +A+D +N G+ +R SQ A R +FI N+ R ++ +
Sbjct: 111 QQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 170
Query: 203 SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262
S G + ++ D + N++G+ F+ + A+ + +K+ L V
Sbjct: 171 SLFG-NILSCKVATD--DDGNSKGYGFVHFETEASAQTAIEKVN--GMLLSDKKVFVGKF 225
Query: 263 DPR--NVDSSGASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
PR + G S +K V+VKN ++ + +LK++F +G I VV G+ K
Sbjct: 226 QPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKG- 284
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
GFV +A+ +A KA+ + + L+G L+ S+ + Q
Sbjct: 285 FGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQ 321
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ I + ++ LR G +T ++M ++ +KGF FV F E A+ A
Sbjct: 346 QGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMV-DENGRSKGFGFVCFEKPEEATAA 404
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N+ K + + +Q K
Sbjct: 405 VTEMNSKMIGAKPLYVALAQRK 426
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+IG++ + L + S GP V + + +D S + G+A++ + AE +
Sbjct: 64 LYIGDLHGDVTESMLFEKFSMAGP-VLSIRVCRD-NTSRLSLGYAYVNFQQPADAERALD 121
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF++ P + W+ DP + + +++KNL R + + F G
Sbjct: 122 TM---NFEIIHGRPMRIMWSQRDPAARRAGNGN----IFIKNLDRVIDNKSIYDTFSLFG 174
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
I V G K GFVHF +SA A++ L + + +P+A +
Sbjct: 175 NILSCKVATDDDGNSKG-YGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQR 231
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 119/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 165
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 166 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 220
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VYVKN+ VT ++ ++LF +G IT + G+ + GFV++
Sbjct: 221 SKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRG-FGFVNYV 279
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+ +A A+ + Q L A+
Sbjct: 280 DHQNAQSAVDELNDKDFHSQKLYVGRAQ 307
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI E+ +++ + G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYG-DI 257
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D +S +RGF F+ Y +H+ A+ + ++ + +F + V A ++
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHQNAQSAVDELNDKDFH--SQKLYVGRAQKKHERE 313
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF G IT V
Sbjct: 314 EELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTITSAKV 365
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I + ++ + R+ G++T I + DS +
Sbjct: 214 ISKKDRQSKFEEMKA---NFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISR-DDSGK 269
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + + + A A+D+LN+ +F +K+ +Q K+
Sbjct: 270 SRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKH 310
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 117/265 (44%), Gaps = 14/265 (5%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + ++G V +R+ + + ++ G+A+V + N + K
Sbjct: 76 PKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEK 135
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+++LN + KG+ R SQ L FI N+ ++ L S G T
Sbjct: 136 ALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFG---T 192
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVD 268
+ + N++G+ F+ + + A + + + N K VS D ++
Sbjct: 193 ILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKF 252
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+ + VY+KN+ VT ++ LFE G IT + + G+ + GFV+F
Sbjct: 253 EAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRG-FGFVNFESHE 311
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A KA+ YE G+ L A+
Sbjct: 312 AAQKAVDEMNDYEFHGKKLYVGRAQ 336
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + ++ + +KG+ FV F +++ A+ AI+ +
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVAL-DEYGNSKGYGFVHFASIDSANAAIEHV 227
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ ++I NI E+ + + G +
Sbjct: 228 NGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFG-AI 286
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T LVKD S RGF F+ + +H+ A+ + +M + ++ V A R+
Sbjct: 287 TSFSLVKD--ESGKPRGFGFVNFESHEAAQKAVDEMND--YEFHGKKLYVGRAQKRHERE 342
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +++KNL V + LK F G IT V + G+
Sbjct: 343 AELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKS 402
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV ++ A KA+ + L G+ L +LA+
Sbjct: 403 KG-FGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQ 439
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E E +K E + L G ++I + + ++ L+ + G +T ++M +
Sbjct: 340 EREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMT-DE 398
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
+ ++KGF FV + + E A+KAI ++N GK + + +Q K
Sbjct: 399 NGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRK 441
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + + ++ L D I V VR+ + + + + G+ +V + N A+ A++
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN GK IR S LFI N+ + ++ L + S G V +
Sbjct: 85 NLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG-NVLSCK 143
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK-----MTNPNFKLGTNAPTVSWADPRNVD 268
+ D ++ +++G F+++ N + A+ + +K M + +G + P+ +
Sbjct: 144 VAMD--SNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTN 201
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
VYVKNL + T + LK+LF G IT V + + G K R GFV+F
Sbjct: 202 ---------VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSK-RFGFVNFQSSD 251
Query: 329 SAMKAL 334
SA A+
Sbjct: 252 SAATAV 257
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 33/243 (13%)
Query: 143 KGFAFVTFRNVELASKAIDKLNNTEFKGKKI------RCS-TSQAKY-RLFIGNIPRNWG 194
KG FV F N + A AI+KL+ KK+ RC S K+ +++ N+ ++
Sbjct: 153 KGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYT 212
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254
+EDL+++ + G +T V+++KD + N++ F F+ + + A + +K+ T
Sbjct: 213 NEDLKQLFNTFGV-ITSVKIMKD--ENGNSKRFGFVNFQSSDSAATAVEKLNGST----T 265
Query: 255 NAPTVSWADPRNVDSSGASQVKA-----------------VYVKNLPRNVTQDQLKKLFE 297
N V + S +++KA +Y+KN+ +++ +++LK+LF
Sbjct: 266 NDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFS 325
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357
G IT V G+ K +GFV F A KA+ + + + S+A+ + +
Sbjct: 326 EFGTITSCKVMSDARGRSKG-VGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEE 384
Query: 358 QKS 360
+K+
Sbjct: 385 RKA 387
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + + DL+ + G +T V+IMK ++ +K F FV F++ + A+
Sbjct: 197 PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMK-DENGNSKRFGFVNFQSSDSAAT 255
Query: 159 AIDKLNNTE-------FKGKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A++KLN + F G+ + S +A+ + L++ NI ++
Sbjct: 256 AVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSL 315
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
E L+++ SE G +T +++ D + S GF
Sbjct: 316 NEEKLKELFSEFGT-ITSCKVMSDARGRSKGVGFV 349
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
E EK K E G+ +Y+ I +E L++ G +T ++M +KG
Sbjct: 291 EQEKLKRYEKF----QGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMS-DARGRSKG 345
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
FV F E ASKAID++N K + S +Q K
Sbjct: 346 VGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRK 382
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + + G+A V F+ +E A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ R+ S+ L S G + +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
+V D S +G+ F+ + + AE + +KM N F + R+ + +
Sbjct: 130 VVCDENGS---KGYGFVHFETQEEAERAIEKM-NGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
A + VY+KNL ++ ++L+ LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA+ +L+G+ + A+ + ++++
Sbjct: 245 RKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 118/290 (40%), Gaps = 51/290 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + L D + G + +++ D + +KG+ FV F E A +AI+K+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEEAERAIEKM 158
Query: 164 NNT----------EFKGKKIRCSTSQAKYR----LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N FK ++ R + A+ + ++I N+ + E LQ + S GP +
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------------- 250
+ V+++ D S ++GF F+ + H+ A + +M +
Sbjct: 219 S-VKVMTD--ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Query: 251 ------KLGTNAPTVSWA-DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303
++ + P + R+V G + +YVKNL + ++L+K F G IT
Sbjct: 276 LKHKFGQMKQDKPKIEQVPQDRSVRCQGVN----LYVKNLDDGIDDERLRKEFSPFGTIT 331
Query: 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
V G GFV F+ A KA+ + + L +LA+
Sbjct: 332 SAKV--TMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 57 IEEEVEEEVEEEEEDADAGKSGDMQI---EDEDEKKKHAELLALPPHGSEVYIGGIPHDA 113
+ E +EE E E + D ++ + + + AEL A + VYI + D
Sbjct: 143 VHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDM 202
Query: 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173
+ L+D G V++M +S ++KGF FV+F E A KA+D++N + GK+I
Sbjct: 203 DDERLQDLFSRFGPALSVKVMT-DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Query: 174 RCSTSQAK 181
+Q K
Sbjct: 262 YVGRAQKK 269
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D ++ E + + + +Y+G + +E L + IG+V +R+ + S ++ G+
Sbjct: 51 DSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGY 110
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSED 197
A+V + +E KAI++LN T +G+ R SQ +FI N+ ++
Sbjct: 111 AYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKA 170
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L S G + V++ D + ++ F F+ Y + A+ + + + L
Sbjct: 171 LHDTFSAFG-KILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVN--GMLLNDREV 225
Query: 258 TVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
V + S ++KA +YVKN+ T+ + ++LF G+IT + + G
Sbjct: 226 YVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG 285
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ K GFV+F E +A KA++ E++GQ + A+
Sbjct: 286 KSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 33/277 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ V++ D ++K F FV + E A AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVAT-DDLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +++ + +A Y +++ NI + ++ +++ + G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG-KI 274
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T + L KD + S +GF F+ + H+ A + +++ + G R
Sbjct: 275 TSIYLEKDAEGKS--KGFGFVNFEEHEAAAKAVEELNDKEIN-GQKIYVGRAQKKRERTE 331
Query: 270 SGASQVKAV-------------YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
Q +AV +VKNL + ++L++ F+ G IT V G+ K
Sbjct: 332 ELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSK 391
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + ++G+ L +LA+
Sbjct: 392 G-FGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + + G +T ++M D+ ++KGF FV F E A+KA
Sbjct: 349 QGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMV-DDAGKSKGFGFVCFSTPEEATKA 407
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 408 ITEMNQRMVNGKPLYVALAQRK 429
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 14/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V + N +A++
Sbjct: 56 ASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 115
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + K + R SQ + +FI N+ + L + G V +
Sbjct: 116 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG-NVLSCK 174
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S RGF F+ Y + A+ + + + N K +S + +
Sbjct: 175 VATDENGRS--RGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQ 232
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
SQ +YVKNL VT D+ +F G +T VV + G+ K GFV+F + SA
Sbjct: 233 KSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKG-FGFVNFKDHESAQ 291
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A+ EL+G+ L + A+ +A++
Sbjct: 292 AAVDALHDTELNGKKLFVTRAQKKAER 318
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 30/190 (15%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ + + ++ + D GEVT + K ++ ++KGF FV F++ E A A+D
Sbjct: 237 TNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEG-KSKGFGFVNFKDHESAQAAVD 295
Query: 162 KLNNTEFKGKKIRCSTSQ---------------------AKYR---LFIGNIPRNWGSED 197
L++TE GKK+ + +Q +KY+ L+I N+ + +
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK 355
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L+ G +T ++++D K +S +GF F+ Y + + A + +M N LG+
Sbjct: 356 LRAEFEPFG-TITSCKIMRDEKGTS--KGFGFVCYSSPEEATKAVAEMNNK--MLGSKPL 410
Query: 258 TVSWADPRNV 267
VS A R V
Sbjct: 411 YVSPAQRREV 420
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ ++ ++GF FV + E A AI +
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVAT-DENGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 164 NNTEFKGKKIRCSTSQAK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ +K L++ N+ ++ + ++ G V
Sbjct: 205 NGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFG-EV 263
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + KD + S +GF F+ + +H+ A+ + + + +L V+ A +
Sbjct: 264 TSAVVQKDEEGKS--KGFGFVNFKDHESAQAAVDALHD--TELNGKKLFVTRAQKKAERE 319
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +Y+KNL ++ D+L+ FE G IT + + G
Sbjct: 320 EELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTS 379
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV ++ A KA+ L + L S A+
Sbjct: 380 KG-FGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 20/269 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V + +V
Sbjct: 64 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGE 123
Query: 158 KAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KGK R SQ L FI N+ ++ L + G +
Sbjct: 124 KALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-NI 182
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D + N++G+ F+ Y + A + + + L V + P+
Sbjct: 183 LSCKVATD--ENGNSKGYGFVHYETDEAAAQAIKHVN--GMLLNEKKVYVGYHIPKKDRQ 238
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHF 324
S ++KA VY+KN+ VT+++ ++ F G IT + A+ + K R GFV++
Sbjct: 239 SKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTL--ARDAEGKPRGFGFVNY 296
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAK 353
+ +SA K ++ E GQ L A+
Sbjct: 297 STHASAAKCVEEMNGKEWRGQELYVGRAQ 325
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + +E + R+F GE+T + + +
Sbjct: 232 IPKKDRQSKFEEMKA---NYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKP 288
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
+GF FV + A+K ++++N E++G+++ +Q K+
Sbjct: 289 -RGFGFVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQN 347
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGV-------TGVELVKDMKNSSNN 224
L+I N+ E L+ + +E GP T E KD KN NN
Sbjct: 348 KYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENN 401
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 76/330 (23%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
HG+ ++I + L D + G + ++ ++ + +KG+ FV + E A++A
Sbjct: 155 HGN-IFIKNLDAAIDNKALHDTFAAFGNILSCKVATDENGN-SKGYGFVHYETDEAAAQA 212
Query: 160 IDKLNNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEV 205
I +N KK+ Q+K+ ++I NI E+ ++ S+
Sbjct: 213 IKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEEEFREFFSKW 272
Query: 206 GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G +T L +D + RGF F+ Y H A ++M ++ V A +
Sbjct: 273 G-EITSSTLARDAEGKP--RGFGFVNYSTHASAAKCVEEMNGKEWR--GQELYVGRAQKK 327
Query: 266 N--------------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV---- 307
+ ++ Q +Y+KNL V ++L+ +F G IT V
Sbjct: 328 HEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDT 387
Query: 308 PPAKPGQEKNR-------------------------------------IGFVHFAERSSA 330
PP EKN+ GFV FA A
Sbjct: 388 PPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPERKLGKSKGFGFVCFANPDDA 447
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA+ + +DG+ L +LA+ + +KS
Sbjct: 448 TKAVAEMNQRMVDGKPLYVALAQRKEVRKS 477
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
QA L++G + + L ++ S++G V + + +D + + G+A++ Y++
Sbjct: 65 QASASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAV-TRRSLGYAYVNYNSVADG 122
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L P + W+ DP + +G + ++KNL + L
Sbjct: 123 EKALEEL---NYTLIKGKPCRIMWSQRDPA-LRKTGHGNI---FIKNLDAAIDNKALHDT 175
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 176 FAAFGNILSCKVATDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 234
Query: 356 ADQKS 360
D++S
Sbjct: 235 KDRQS 239
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 18/266 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N GK IR SQ +FI N+ ++ ++ + S G + +
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCK 136
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D SN++G+ F+ + + A+ + +K+ L V PR
Sbjct: 137 VAND--EESNSKGYGFVHFETEESAQKAIEKVN--GMLLEGKKVYVGKFQPRTARLREMG 192
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN + ++ L+KLF G+IT V G+ K GFV F
Sbjct: 193 ETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKG-FGFVAFENPED 251
Query: 330 AMKALKNTEKYELDGQALECSLAKPQ 355
A KA+ +YEL G + + + Q
Sbjct: 252 AEKAVTEMHEYELPGTERKLYVCRAQ 277
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 33/285 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + D G + ++ ++S+ +KG+ FV F E A KAI+K+
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKV 166
Query: 164 NNTEFKGKKIRCSTSQ---AKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +GKK+ Q A+ R ++I N E L+K+ S+ G +
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGK-I 225
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T ++ D S +GF F+ + N + AE + +M V A +N
Sbjct: 226 TSAAVMVDADGKS--KGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERS 283
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
V+ Q +YVKNL V D LK+ FE +G+IT V G+
Sbjct: 284 AELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRS 343
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F + A KA+ + + L +LA+ + D+K+
Sbjct: 344 KG-FGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKA 387
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 45/313 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + E+ + GE T ++++ K + +++G+ F+ F + +A + +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN + + R T + +F+G++ L V V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGT----NAPTVS 260
G ++V D + + ++G+ F+ + + E + Q + ++G NA +
Sbjct: 182 KGAKVVLD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 261 WADPRNVDSSGAS----QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
A +N + A ++V L NVT D+LK +F G + V +PP K
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK----- 295
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP---QADQK--SAGGSVSEKPSL 371
R GFV +A ++SA AL +L GQ++ S + Q+DQ + GG P
Sbjct: 296 -RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQ- 353
Query: 372 LQNYPPHIGYGLA 384
P GYG A
Sbjct: 354 -----PQGGYGYA 361
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++GG+ + ++ +L+ GE+ V+I GK FV + N A
Sbjct: 257 PNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEH 310
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 311 ALSVLNGTQLGGQSIRLS 328
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 23/261 (8%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + S+ L + G+V VR+ + S + G+A+V F N A+
Sbjct: 42 PLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAA 101
Query: 158 KAIDKLNNTEFKGKKIRC--------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+A++ LN K IR S +FI N+ + ++ L + S G
Sbjct: 102 RALEVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFG--- 158
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD- 268
T + M + ++GF F++Y + A+ + + + N L + P R +
Sbjct: 159 TILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSL---NGMLINDKPVFVGPFLRKQER 215
Query: 269 --SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
S ++ V+VKNL + T++ L K+F +G IT VV G+ + GF++F
Sbjct: 216 DHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRC-FGFINFEN 274
Query: 327 RSSAMKALKNTEKYELDGQAL 347
+A +A++ EL+G+ +
Sbjct: 275 PDAASRAVQ-----ELNGKKI 290
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 48/336 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ ++I + L + S G + ++ ++ ++KGF FV + E A AI
Sbjct: 134 ANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAM-DEAGQSKGFGFVQYEKEEAAQNAIK 192
Query: 162 KLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN K + S + K+ +F+ N+ + EDL KV E G +
Sbjct: 193 SLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYG-SI 251
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T ++ M S R F FI + N A + Q++ K+ V A ++
Sbjct: 252 TSAVVMIGMDGKS--RCFGFINFENPDAASRAVQELNGK--KINDKEWYVGRAQKKSERE 307
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
D++ Q +Y+KNL ++ DQL++LF + G+IT V + G
Sbjct: 308 MELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLS 367
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS--------AGGSVSE 367
K GFV F+ R A +AL + G+ L + A+ + D+K+ +V
Sbjct: 368 KGS-GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPM 426
Query: 368 KPSL---LQNYPP----HIGYGLAGGTYGALGAGFG 396
P+L L YPP + YG A GFG
Sbjct: 427 TPTLAPRLPMYPPMAPQQLFYGQAPPAMIPPQPGFG 462
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 15/269 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 71
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ +N ++ L S G + +
Sbjct: 72 TMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFG-NILSCK 130
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S G+ F+ + + A S +K+ N K +S + +
Sbjct: 131 IAMDQNGSL---GYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDK 187
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
A + VYVKNL + +L+++FE G+I + + GQ++ GFV F + +A
Sbjct: 188 AKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRG-FGFVSFDDHEAAA 246
Query: 332 KALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ E++G+ + A+ +A++++
Sbjct: 247 KAVEELNNKEVEGKEIYVGRAQKKAERQA 275
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 111/285 (38%), Gaps = 37/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + L D + G + +I D + + G+ FV F E A +I+K+
Sbjct: 102 IFIKNLDKNIDNKALYDTFSAFGNILSCKI--AMDQNGSLGYGFVHFETEEAARNSIEKV 159
Query: 164 NNTEFKGKKIRCSTSQA-KYRL-------------FIGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ + K RL ++ N+ + L+++ V
Sbjct: 160 NGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFE-----V 214
Query: 210 TGVELVKDMKNS--SNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTN 255
G + M N+ RGF F+ + +H+ A + +++ N K
Sbjct: 215 FGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQ 274
Query: 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
A + ++ Q +YVKNL + ++L+K F G IT V G
Sbjct: 275 AELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARV--MTEGGR 332
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + D+K+
Sbjct: 333 TKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKA 377
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ + + LR+ + G++ ++M + + +GF FV+F + E A+KA++
Sbjct: 192 TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMN-TEEGQKRGFGFVSFDDHEAAAKAVE 250
Query: 162 KLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSED 197
+LNN E +GK+I +Q K L++ N+ E
Sbjct: 251 ELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDER 310
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+K S+ G + + M +GF F+ +
Sbjct: 311 LRKEFSQFGT----ITSARVMTEGGRTKGFGFVCF 341
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + LR G +T R+M + KGF FV F + E A+KA
Sbjct: 293 QGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMT--EGGRTKGFGFVCFSSPEEATKA 350
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 351 VTEMNGRIVVAKPLYVALAQRK 372
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 39/288 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + + E+ L GEVT V++++ K +S+++G+ F+ F + A + +
Sbjct: 68 LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 127
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN F + Y +F+G++ + LQ+ V
Sbjct: 128 NGAIMPNGGQSFRLNWATFSAGERSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSV 187
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM------TNPNFKLG---------T 254
G ++V D + + +G+ F+ + + + +M T P ++G
Sbjct: 188 KGAKVVID-RLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRP-MRIGPASNKTPTTQ 245
Query: 255 NAPTVSW--ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP 312
+ P S+ + P+ + ++V NL NVT D L+++F +G + V +P K
Sbjct: 246 SQPKASYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGK- 304
Query: 313 GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
R GFV FA+RS A +AL+ L GQ + S + +++++
Sbjct: 305 -----RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQA 347
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++G + + ++ LR GE+ V+I GK FV F + A +
Sbjct: 266 PNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRC------GFVQFADRSCAEE 319
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T G+ +R S
Sbjct: 320 ALRVLNGTLLGGQNVRLS 337
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---- 269
+ D S RGF F+ + H+ A+ + M L V R +
Sbjct: 130 VACDKHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRRERAAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G+ + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L S A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 120/283 (42%), Gaps = 33/283 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + ++ K S +GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHGS--RGFGFVHFETHEAAQQAINTM 158
Query: 164 NNT----------EFKGKKIRCSTSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N FK ++ R + A+ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFG-KM 217
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNV 267
V++++D NS +R F F+ + H+ A+ + M +L + + +N
Sbjct: 218 LSVKVMRD--NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Query: 268 DSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
Q+K +YVKNL ++ D+L+K F +G IT V G
Sbjct: 276 LKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGSHSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR-DNSGRSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR 183
F FV F E A KA+ +N E G+ + S +Q ++Y+
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQ 292
Query: 184 ---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + + L+K S G + K M S+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGSHSKGFGFVCF 340
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 18/266 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N GK IR SQ +FI N+ ++ ++ + S G + +
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFG-NILSCK 136
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D SN++G+ F+ + + A+ + +K+ L V PR
Sbjct: 137 VAND--EESNSKGYGFVHFETEESAQKAIEKVN--GMLLEGKKVYVGKFQPRTARLREMG 192
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A + VY+KN + ++ L+KLF G+IT V G+ K GFV F
Sbjct: 193 ETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKG-FGFVAFENPED 251
Query: 330 AMKALKNTEKYELDGQALECSLAKPQ 355
A KA+ +YEL G + + + Q
Sbjct: 252 AEKAVTEMHEYELPGTERKLYVCRAQ 277
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 33/285 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + D G + ++ ++S+ +KG+ FV F E A KAI+K+
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKV 166
Query: 164 NNTEFKGKKIRCSTSQ---AKYR-----------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +GKK+ Q A+ R ++I N E L+K+ S+ G +
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGK-I 225
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T ++ D S +GF F+ + N + AE + +M V A +N
Sbjct: 226 TSAAVMVDADGKS--KGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERS 283
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
V+ Q +YVKNL V D LK+ FE +G+IT V G+
Sbjct: 284 AELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRS 343
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F + A KA+ + + L +LA+ + D+K+
Sbjct: 344 KG-FGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKA 387
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S +G+AF+ + + A+ + +KM L V R
Sbjct: 121 VVCDENGS---KGYAFVHFETQEAADKAIEKMN--GMLLNDRKVFVGRFKSRKEREAELG 175
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + VY+KN V D LK+LF G+ V V G+ K GFV + +
Sbjct: 176 AKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 234
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA++ E+ G+A+ A+ + ++++
Sbjct: 235 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 37/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + +++ D + +KG+AFV F E A KAI+K+
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 149
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N FK +K R + AK + F +N+G E +L+++ S+ G +
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
+ V++++D S ++GF F+ Y H+ A + ++M ++ A V A +
Sbjct: 210 S-VKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIFVGRAQKKVERQ 264
Query: 266 --------NVDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
+ S+ + V Y+KNL + ++L+K F G IT V + G+
Sbjct: 265 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV-MLEDGRS 323
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 324 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 367
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +L++ G+ V++M+ S ++KG
Sbjct: 165 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMR-DPSGKSKG 223
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 224 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 283
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+I N+ E L+K S G + K M ++GF F+ +
Sbjct: 284 GVNLYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 331
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 27/256 (10%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEV---RIMKGKDSSENKGFAFVTFRNVELASKA 159
EV+IG I +A+E +R ++ G T +M + + +++G+AF + + E A+KA
Sbjct: 152 EVFIGSISLEATEDAVRRALKACGAETGAVGFEMMTDRATGKHRGYAFARYGDPESAAKA 211
Query: 160 IDKLNN--TEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
I+ + + E G+KIR S K R+F+G I ++ + + + G G+ EL +
Sbjct: 212 IETIESARVEIGGQKIRASVKPNKTRVFVGGIRKDATRAECVEALRARGAGLEFFELARP 271
Query: 218 MK------NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKL------GTNAPTVSWADPR 265
K + N G + Y+N CAE + M KL T T SWA
Sbjct: 272 KKKKEGVEQTDENGGHGWATYYNEACAERFMKNMREAEDKLPIANESDTRGMTTSWA--- 328
Query: 266 NVDSSGA--SQVKAVYVKNL-PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV 322
V +S A ++ ++V++L N T++ +++ F G I V + + +E + +V
Sbjct: 329 TVKASAAKVQGIRTLHVRDLNSTNATEEAMRECFGRFGDIEDVQL---RTDREPH-FAWV 384
Query: 323 HFAERSSAMKALKNTE 338
FA + A KAL E
Sbjct: 385 TFANPNDAEKALGECE 400
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 24/254 (9%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y G + D +E L + +IG V +R+ + + ++ G+A++ F NV A +A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT-GV 212
LN + KG+ R S L ++ N+ RN ++ L S G ++ V
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS-WADPRNVDSSG 271
L D K +RGF F+ + + + AE + K+ ++G V+ + +
Sbjct: 168 ALTPDGK----SRGFGFVHFESDESAEAAIAKLN--GMQIGEKTVYVAPFKKTAERNDGT 221
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VY+K++P + ++++K+ F G IT + V G+ R FV++AE A
Sbjct: 222 PKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGR---RFAFVNYAEFEQAR 278
Query: 332 KALKNTEKYELDGQ 345
A++ E+DG+
Sbjct: 279 AAVE-----EMDGK 287
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC 237
SQ L+ G++ + L +V + +GP V + + +D + + G+A+I +HN
Sbjct: 44 SQQFASLYAGDLAPDVTEAVLYEVFNAIGP-VASIRVCRD-SVTRKSLGYAYINFHNVAD 101
Query: 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE 297
AE + + K S DP + SGA V YVKNL RN+ L F
Sbjct: 102 AERALDTLNYSPIKGRPCRLMWSHRDP-ALRRSGAGNV---YVKNLDRNIDNKALYDTFS 157
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
G I V G+ + GFVHF SA A+
Sbjct: 158 LFGNILSCKVALTPDGKSRG-FGFVHFESDESAEAAI 193
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YVKNL +V +LKK+FE G +T V V G + GFV F+ A KA+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRG-FGFVCFSTHEEATKAVTDM 435
Query: 338 EKYELDGQALECSL 351
+ G+ L +
Sbjct: 436 HLKLIGGKPLYVGM 449
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + D + +L+ + G VT V++M D ++GF FV F E A+KA+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMV-DDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 164 NNTEFKGKKI----------RCSTSQAKYR 183
+ GK + R Q +YR
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRYR 465
>gi|297844004|ref|XP_002889883.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
gi|297335725|gb|EFH66142.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 120/284 (42%), Gaps = 33/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GE+ ++++ K + + +G+ F+ F + A + +
Sbjct: 66 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 125
Query: 164 NNT---EFKGKKIRCSTSQAK----------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NN F + R + + Y +F+G++ + L + P V
Sbjct: 126 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 185
Query: 211 GVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G ++V D + + +G+ F+ + + E + + ++G A R
Sbjct: 186 GAKVVID-RATGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 244
Query: 266 NVDSSGASQV--------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ S A V V+V L ++VT D LK +F +G I V +P K
Sbjct: 245 DSYQSAAGGVPTDNDPNNTTVFVGGLDQSVTDDHLKNVFGQYGEIVHVKIPAGK------ 298
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSA 361
R GFV F+E+S A +AL+ +L G + S + ++++SA
Sbjct: 299 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSA 342
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + V++GG+ ++ L++ GE+ V+I GK FV F A +
Sbjct: 260 PNNTTVFVGGLDQSVTDDHLKNVFGQYGEIVHVKIPAGKRC------GFVQFSEKSCAEE 313
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN + G +R S
Sbjct: 314 ALRMLNGVQLGGTTVRLS 331
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 18/259 (6%)
Query: 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156
+P H + +Y+G + DASE L + ++G V +R+ + + + G+A+V F NV A
Sbjct: 7 VPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDA 66
Query: 157 SKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPG 208
+A+D +N T K K R SQ L F+ N+ + + L S G
Sbjct: 67 ERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFG-N 125
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ ++ D + ++G+ ++ Y + A + K+ N + R +
Sbjct: 126 ILSCKVATD--EAGRSQGYGYVHYESEDAATDAINKI---NSMTICDKEVYVGHFVRRTE 180
Query: 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
SG S +YVKN P + ++ L+K FE G IT A G G+V+F
Sbjct: 181 RSGQSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA---FGWVNFEAHD 237
Query: 329 SAMKALKNTEKY-ELDGQA 346
+A+ A+ EL GQA
Sbjct: 238 AAVAAMDALNGIAELPGQA 256
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 126 GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
G +T R+M+ + ++GF FV F + E A+KA+ ++NN GK I + +Q K
Sbjct: 324 GTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRK 379
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 45/313 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + E+ + GE T ++++ K + +++G+ F+ F + +A + +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN + + R T + +F+G++ L V V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLG----TNAPTVS 260
G ++V D + + ++G+ F+ + + E + Q + ++G NA +
Sbjct: 182 KGAKVVLD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 261 WADPRNVDSSGAS----QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
A +N + A ++V L NVT D+LK +F G + V +PP K
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK----- 295
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP---QADQK--SAGGSVSEKPSL 371
R GFV +A ++SA AL +L GQ++ S + Q+DQ + GG P
Sbjct: 296 -RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQ- 353
Query: 372 LQNYPPHIGYGLA 384
P GYG A
Sbjct: 354 -----PQGGYGYA 361
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++GG+ + ++ +L+ GE+ V+I GK FV + N A
Sbjct: 257 PNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEH 310
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 311 ALSVLNGTQLGGQSIRLS 328
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 24/254 (9%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y G + D +E L + +IG V +R+ + + ++ G+A++ F NV A +A+D
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT-GV 212
LN + KG+ R S L ++ N+ RN ++ L S G ++ V
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS-WADPRNVDSSG 271
L D K +RGF F+ + + + AE + K+ ++G V+ + +
Sbjct: 168 ALTPDGK----SRGFGFVHFESDESAEAAIAKLN--GMQIGEKTVYVAPFKKTAERNDGT 221
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VY+K++P + ++++K+ F G IT + V G+ R FV++AE A
Sbjct: 222 PKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGR---RFAFVNYAEFEQAR 278
Query: 332 KALKNTEKYELDGQ 345
A++ E+DG+
Sbjct: 279 AAVE-----EMDGK 287
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKC 237
SQ L+ G++ + L +V + +GP V + + +D + + G+A+I +HN
Sbjct: 44 SQQFASLYAGDLAPDVTEAVLYEVFNAIGP-VASIRVCRD-SVTRKSLGYAYINFHNVAD 101
Query: 238 AEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE 297
AE + + K S DP + SGA V YVKNL RN+ L F
Sbjct: 102 AERALDTLNYSPIKGRPCRLMWSHRDP-ALRRSGAGNV---YVKNLDRNIDNKALYDTFS 157
Query: 298 HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334
G I V G+ + GFVHF SA A+
Sbjct: 158 LFGNILSCKVALTPDGKSRG-FGFVHFESDESAEAAI 193
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337
+YVKNL +V +LKK+FE G +T V V G + GFV F+ A KA+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRG-FGFVCFSTHEEATKAVTDM 435
Query: 338 EKYELDGQALECSL 351
+ G+ L +
Sbjct: 436 HLKLIGGKPLYVGM 449
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + D + +L+ + G VT V++M D ++GF FV F E A+KA+ +
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMV-DDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 164 NNTEFKGKKI----------RCSTSQAKYR 183
+ GK + R Q +YR
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRYR 465
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ R+ ++ + S G + +
Sbjct: 71 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ +D +S +G+ F+ + + A S +K+ L V PR
Sbjct: 130 VAQDENGTS--KGYGFVHFETEEAANKSIEKVN--GMLLNGKKVYVGRFIPRKEREKELG 185
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN ++T++QL+ +FE +G+IT + G+ K GFV F +
Sbjct: 186 EKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKG-FGFVAFESPEA 244
Query: 330 AMKALKNTEKYE-LDGQALECSLAKPQADQK 359
A A++ E +DG+ L A+ +A+++
Sbjct: 245 AETAVEALNGKEIIDGKPLYVGRAQKKAERQ 275
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 123/299 (41%), Gaps = 63/299 (21%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + ++ + +KG+ FV F E A+K+I+K+
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGT-SKGYGFVHFETEEAANKSIEKV 159
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLFIGNIPRNWGS----EDLQKVVSEVGPGV 209
N GKK+ R K +LF +N+G E L+ + + G +
Sbjct: 160 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYG-KI 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T +++ K+ ++GF F+ + + + AE + + + N + P V
Sbjct: 219 TSYKIMS--KDDGKSKGFGFVAFESPEAAETAVEAL---------NGKEIIDGKPLYV-- 265
Query: 270 SGASQVKA-------------------------VYVKNLPRNVTQDQLKKLFEHHGRITK 304
G +Q KA +YVKNL + ++L+K F G IT
Sbjct: 266 -GRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITS 324
Query: 305 VVVPPAKPGQEKNR---IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
AK E NR GFV F+ A KA+ + + L +LA+ + D+K+
Sbjct: 325 -----AKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKA 378
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 30/156 (19%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY+ D +E LR + G++T +IM KD ++KGF FV F + E A A++
Sbjct: 192 TNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIM-SKDDGKSKGFGFVAFESPEAAETAVE 250
Query: 162 KLNNTE-FKGKKIRCSTSQAK------------------------YRLFIGNIPRNWGSE 196
LN E GK + +Q K L++ N+ E
Sbjct: 251 ALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDE 310
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+K S G + K M + ++GF F+ +
Sbjct: 311 RLRKEFSPFG----TITSAKVMMEDNRSKGFGFVCF 342
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 16/194 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S GP V + + +D+ + + G+A++ + AE +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGP-VLSIRVCRDLI-TRRSLGYAYVNFQQPADAERALD 70
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF L P + W+ DP S S V V++KNL R++ + F G
Sbjct: 71 TM---NFDLIKGRPIRIMWSQRDP----SLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFG 123
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V + G K GFVHF +A K+++ L+G+ + P+ +++
Sbjct: 124 NILSCKVAQDENGTSKG-YGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK 182
Query: 361 AGGSVSEKPSLLQN 374
G EK L N
Sbjct: 183 ELG---EKAKLFTN 193
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + LR G +T ++M + + +KGF FV F + E A+KA
Sbjct: 294 QGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMM--EDNRSKGFGFVCFSSPEEATKA 351
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 352 VTEMNGRIVGSKPLYVALAQRK 373
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 24/270 (8%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + IG V +R+ + + + G+A+V + N +A+++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N + K + R SQ + +FI N+ ++ L + G V ++
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVA 164
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQV 275
D S +G+ F+ Y + AE + + + L V + R S ++
Sbjct: 165 TDEHGRS--KGYGFVHYETGEAAETAIKAVN--GMLLNDKKVYVGYHISRKERQSKLDEM 220
Query: 276 KA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV---HFAERS 328
KA +Y+KNL +VTQD+ +++F+ +G +T +V + G K GFV H E
Sbjct: 221 KAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKG-FGFVNYEHHEEAQ 279
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQ 358
SA+ AL +T ++ G+ L S A+ +A++
Sbjct: 280 SAVDALHDT---DIRGKKLFVSRAQKKAER 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ ++L + + +YI + ++ + + Q G VT I++ + +KGF F
Sbjct: 211 KERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSA-IVQVDEEGNSKGFGF 269
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V + + E A A+D L++T+ +GKK+ S +Q +KY+
Sbjct: 270 VNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVN 329
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+I N+ + E L+ G +T ++++D K++S +GF F+ + + A +
Sbjct: 330 LYIKNLEDDVDDEKLRAEFEPFG-TITSCKVMRDDKSTS--KGFGFVCFSSPDEATKAVA 386
Query: 244 KMTNPNFKLGTNAPTVSWADPRNV 267
+M N +G+ VS A R V
Sbjct: 387 EMNNK--MIGSKPLYVSLAQRREV 408
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 16/252 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + L D IG V VR+ + + ++ G+A+V + A++A++
Sbjct: 34 TSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALE 93
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G+ IR S +FI N+ ++ ++ L G + +
Sbjct: 94 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 152
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN--PNFKLGTNAPTVSWADPRNVDSSG 271
+ D S ++G+ F++Y + A + +K+ N K P + + N S G
Sbjct: 153 VATDA--SGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDN--SPG 208
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ V+VKNL T+D L+++F G IT VVV G+ K GFV+F A
Sbjct: 209 NVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKC-FGFVNFESPDEAA 267
Query: 332 KALKNTEKYELD 343
A+++ + D
Sbjct: 268 LAVQDLNGKKFD 279
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 31/284 (10%)
Query: 102 SEVYIGGIPHDASEHDLRD-FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ ++I + L D FC G + ++ S E+KG+ FV + E A AI
Sbjct: 122 ANIFIKNLDKSIDNKALYDTFC-VFGNILSCKVATDA-SGESKGYGFVQYERDEAAHAAI 179
Query: 161 DKLNNTEFKGKKIRC-----------STSQAKYR-LFIGNIPRNWGSEDLQKVVSEVGPG 208
+KLN KK+ S K+ +F+ N+ +DL+++ + G
Sbjct: 180 EKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFG-T 238
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAP 257
+T V ++++ ++ F F+ + + A + Q + F K
Sbjct: 239 ITSVVVMRE--GDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREM 296
Query: 258 TVSWADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ +N+ +++ Q +Y+KNL V ++L++LF G IT V G +
Sbjct: 297 ELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASR 356
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F A +AL + + L +LA+ + D+K+
Sbjct: 357 GS-GFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKA 399
>gi|322784020|gb|EFZ11160.1| hypothetical protein SINV_07875 [Solenopsis invicta]
Length = 263
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAI 160
E+++G IP E L + +GEV ++R+M D +E +G+ F+ + N + A++AI
Sbjct: 98 CEIFVGRIPKTIYEDTLYPLFKRVGEVFQIRLMV--DMAELTRGYCFIMYTNPDDAARAI 155
Query: 161 DKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMK 219
+L+ E G+KIR S K +L++G +P + SE++ +V+ +E V +
Sbjct: 156 TQLDQYEISPGRKIRVLASVNKCKLYVGPLPWHIASEEVVRVIYA---SAWDIEYVSIYR 212
Query: 220 NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA----DPRNV 267
+++ +A + + +H+ A +R+K+ P N V WA +P NV
Sbjct: 213 FPNHDAAYAIVSFKSHRNAALARRKL-RPERLFKCNEVHVEWARVDWNPTNV 263
>gi|255563907|ref|XP_002522953.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223537765|gb|EEF39383.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 404
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 123/284 (43%), Gaps = 34/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + E L + GEV ++++ K + +G+ F+ F N A + +
Sbjct: 68 LWIGDLQQWMDEGYLFNIFSGTGEVVSAKVIRNKQTGMPEGYGFIEFINRAAAERILQTY 127
Query: 164 NNTEF----KGKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T+ + ++ +T A Y +F+G++ + LQ+ V P V
Sbjct: 128 NGTQMPNTEQNFRLNWATLAAGERRQDDGPDYTVFVGDLAPDVNDFILQETFRTVYPSVK 187
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLG---TNAPTVSWA 262
G ++V D + + +G+ F+ + E + Q + ++G T P V
Sbjct: 188 GAKVVTD-RLTGRTKGYGFVRFGDENEQRRAMVEMNGQYCSTRAMRIGPAATKKPAVQQY 246
Query: 263 DPRNVDSSGASQVK------AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
S+ +Q + ++V L +V+ + L+++F +G + V +P K
Sbjct: 247 QKAPYQSTQGTQGENDPNNTTIFVGALDPSVSDEHLRQVFGKYGELVHVKIPAGK----- 301
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
R GFV FA R+ A +AL +L GQ++ S + +++++
Sbjct: 302 -RCGFVQFANRACAEQALLGLNGTQLAGQSIRLSWGRSPSNKQA 344
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++G + S+ LR GE+ V+I GK FV F N A +
Sbjct: 263 PNNTTIFVGALDPSVSDEHLRQVFGKYGELVHVKIPAGKRC------GFVQFANRACAEQ 316
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 317 ALLGLNGTQLAGQSIRLS 334
>gi|113205592|ref|NP_001037899.1| dead end homolog 1 [Xenopus (Silurana) tropicalis]
gi|89269952|emb|CAJ81779.1| dead end homolog 1 (zebrafish) [Xenopus (Silurana) tropicalis]
Length = 373
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSEV+IG IP D E L QSIG++ E R+M S N+GFA+ + A
Sbjct: 77 PVSGSEVFIGKIPQDIYEDKLIPLFQSIGKLYEFRLMM-TFSGLNRGFAYARYIGRRQAV 135
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LN E KG I S K L + +P + L+ ++ EV GV+ + L +
Sbjct: 136 SAIMTLNGYEITKGCCIVVCRSTEKSELALDGLPSHLEQPALKNILEEVTSGVSALSLYQ 195
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
N S + A ++Y +H+ A +++ + + L TVSW
Sbjct: 196 SPSNES--QVLAIVKYDSHRAAAMAKKSLCEGSQFLRGLPLTVSW 238
>gi|224115306|ref|XP_002316998.1| predicted protein [Populus trichocarpa]
gi|222860063|gb|EEE97610.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + E+ L + GE+ + ++++ K + +G+ F+ F + A + +
Sbjct: 71 LWIGDLQQWMDENYLLSIFSATGEIVQAKVIRNKQTGYPEGYGFIEFVSRAAAERILQTY 130
Query: 164 NNTEF----KGKKIRCSTSQA---------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T + ++ +T A + +F+G++ + LQ+ V P V
Sbjct: 131 NGTPMPNSEQAFRLNWATLGAGERRQDDGPDFTVFVGDLAADVNDYLLQETFRNVYPSVK 190
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYSRQKMTNPNFKLG---TNAPTV--- 259
G ++V D + + ++G+ FI + E + Q + ++G T P
Sbjct: 191 GAKVVTD-RVTGRSKGYGFIRFADENEQRRAMVEMNGQYCSTRPMRIGPAATKKPLTQQY 249
Query: 260 ---SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++ +P+ ++V L +VT D L+ +F +G + V +P K
Sbjct: 250 QKATYQNPQGNQGENDPNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVKIPAGK----- 304
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
R GFV FA R+SA +AL ++ GQ + S +
Sbjct: 305 -RCGFVQFANRTSAEQALSMLNGTQIAGQNIRLSWGR 340
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++G + ++ LR GE+ V+I GK FV F N A +
Sbjct: 266 PNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVKIPAGKRC------GFVQFANRTSAEQ 319
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 320 ALSMLNGTQIAGQNIRLS 337
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ L FI N+ ++ ++ L S G + +
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 151
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S +G+AF+ + + A+ + +KM L V R
Sbjct: 152 VVCDENGS---KGYAFVHFETQEAADKAIEKMN--GMLLNDRKVFVGRFKSRKEREAELG 206
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + VY+KN V D LK+LF G+ V V G+ K GFV + +
Sbjct: 207 AKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 265
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA++ E+ G+A+ A+ + ++++
Sbjct: 266 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 132/287 (45%), Gaps = 41/287 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + +++ D + +KG+AFV F E A KAI+K+
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 180
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N FK +K R + AK + F +N+G E +L+++ S+ G +
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 240
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
+ V++++D S ++GF F+ Y H+ A + ++M ++ A V A +
Sbjct: 241 S-VKVMRD--PSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIFVGRAQKKVERQ 295
Query: 266 --------NVDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPG 313
+ S+ + V Y+KNL + ++L+K F G IT KV++ + G
Sbjct: 296 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDG 352
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ K GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 353 RSKG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 398
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A + VYI + + +L++ G+ V++M+ S ++KG
Sbjct: 196 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMR-DPSGKSKG 254
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV++ E A+KA++++N E GK I +Q K
Sbjct: 255 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 314
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L+I N+ E L+K S G + K M ++GF F+ +
Sbjct: 315 GVNLYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 362
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI + + LR G +T ++M + +KGF FV F + E A+KA
Sbjct: 314 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 371
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 372 VTEMNGRIVGSKPLYVALAQRK 393
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D ++ L + S G V +R+ K + + G+A+V F+ A +A+D
Sbjct: 13 ASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALD 72
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ +N ++ + S G + +
Sbjct: 73 TMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG-NILSCK 131
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ +D SS +G+ F+ + + A S K+ L V PR
Sbjct: 132 VAQDESGSS--KGYGFVHFETEEAATKSIDKVN--GMLLNGKKVFVGKFIPRKEREKELG 187
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN + T D LK++FE +G IT V K Q+ GFV F + +
Sbjct: 188 EKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKD-QKSRGFGFVAFEDPEA 246
Query: 330 AMKALKNTEKYE-LDGQALECSLAKPQADQK 359
A +A+++ E ++G+ L A+ +A+++
Sbjct: 247 AERAVEDLNGKEIIEGKQLYVGRAQKKAERQ 277
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 17/201 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G++ + L + S GP V + + KDM + + G+A++ + AE +
Sbjct: 15 LYVGDLHSDVTKAMLFEKFSSAGP-VLSIRVCKDMI-TRRSLGYAYVNFQQPADAERALD 72
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF P + W+ DP S S V V++KNL +N+ + F G
Sbjct: 73 TM---NFDTLKGRPIRIMWSQRDP----SLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFG 125
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V + G K GFVHF +A K++ L+G+ + P+ +++
Sbjct: 126 NILSCKVAQDESGSSKG-YGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREK 184
Query: 361 AGGSVSEKPSLLQN-YPPHIG 380
G EK L N Y + G
Sbjct: 185 ELG---EKAKLFTNVYVKNFG 202
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + E L D Q + V +R+ + + + G+A+V F + + A+ A++
Sbjct: 39 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 98
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ L + G V +
Sbjct: 99 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT-VLSCK 157
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---SS 270
+ D N+ ++G+ F+++ + A+ + +++ N L + R+ + +
Sbjct: 158 IALD--NNGQSKGYGFVQFEQEEAAQNAIKRL---NGMLINDKQVYVGLFVRHQERNXGN 212
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
G+ + VYVKNL T D LK +F +G IT VV G K GFV+F SA
Sbjct: 213 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKC-FGFVNFQSSDSA 271
Query: 331 MKAL 334
A+
Sbjct: 272 AAAV 275
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 117/290 (40%), Gaps = 42/290 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L D + G V +I ++ ++KG+ FV F E A AI
Sbjct: 127 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIAL-DNNGQSKGYGFVQFEQEEAAQNAIK 185
Query: 162 KLNNTEFKGKKIRCST------------SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN K++ S +++ N+ +DL+ + + G +
Sbjct: 186 RLNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYG-SI 244
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T +++D S ++ F F+ + + A + + + F N V + S
Sbjct: 245 TSAVVMRDA--SGMSKCFGFVNFQSSDSAAAAVEHLNGATF----NDDKVWYVGKAQRKS 298
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPA 310
++++A +Y+KNL +V ++L +LF G IT KV++ P
Sbjct: 299 EREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQ 358
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
G K GFV F A +AL + + L ++A+ + ++K+
Sbjct: 359 --GLSKGS-GFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKA 405
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 28/158 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + ++ DL++ G +T +M+ S +K F FV F++ + A+
Sbjct: 215 PKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMR-DASGMSKCFGFVNFQSSDSAAA 273
Query: 159 AIDKLNNTEFK-------GKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A++ LN F GK R S +A+ R L++ N+ +
Sbjct: 274 AVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSV 333
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF-AFI 230
E L ++ SE G +T +++ D + S GF AF+
Sbjct: 334 NDEKLXELFSEFGT-ITSCKVMLDPQGLSKGSGFVAFL 370
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 18/267 (6%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + +E L + IG V VR+ + + + G+A+V + N +A+D+L
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 164 NNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215
N ++ +GK R SQ + +FI N+ + ++ L + G V ++
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFG-TVLSCKVA 194
Query: 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQV 275
D +S ++G+ F+ Y +++ AE + + + L V R S ++
Sbjct: 195 TD--DSGLSKGYGFVHYDSNEAAEAAIKAVN--GMLLNDKKVFVGQHISRKERQSKIDEM 250
Query: 276 KA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
K+ +YVKNL V +++ + LF G IT V+ + G K GFV+F A
Sbjct: 251 KSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKG-FGFVNFENHEDAQ 309
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
+A++ + E+ G+ + A+ ++++
Sbjct: 310 RAVEELDNKEIHGKPVFVGRAQKKSER 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 31/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ DS +KG+ FV + + E A AI +
Sbjct: 164 IFIKNLDQGIDNKALHDTFAAFGTVLSCKVAT-DDSGLSKGYGFVHYDSNEAAEAAIKAV 222
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G+ I Q+K L++ N+ G E+ + + S+ GP +
Sbjct: 223 NGMLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGP-I 281
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN------PNFKLGTNAPTVSWAD 263
T + KD N++GF F+ + NH+ A+ + +++ N P F + +
Sbjct: 282 TSAVIQKD--EEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEE 339
Query: 264 PRN------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
R + +G Q +Y+KNL +V ++L+ FE G IT V + G K
Sbjct: 340 LRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDEKGTSKG 399
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A +A+ + + L +LA+
Sbjct: 400 -FGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQ 434
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---- 269
+V D S RGF F+ + ++ A+ + M L V R +
Sbjct: 130 VVCDEHGS---RGFGFVHFETYEAAQQAINTMN--GMLLNDRKVFVGHFKSRRERAAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G+ + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L S A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 35/284 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D ++GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETYEAAQQAINTM 158
Query: 164 NNT----------EFKGKKIRCSTSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N FK ++ R + A+ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRN 266
+ VK M++SS +R F F+ + H+ A+ + M +L + + +N
Sbjct: 219 S----VKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Query: 267 VDSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
Q+K +YVKNL ++ +L+K F +G IT V G
Sbjct: 275 ELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKV--MTEGSHS 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ S ++
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR-DSSGRSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR 183
F FV F E A KA+ +N E G+ + S +Q ++Y+
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQ 292
Query: 184 ---LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + L+K S G + K M S+++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDGKLRKEFSPYG----VITSAKVMTEGSHSKGFGFVCF 340
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 20/257 (7%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+G + D +E DL D V V + + + ++ +A++ F + AS A+ +L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 164 NNTEFKGKKIRCSTSQ--AKYR---------LFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
N+++ KGK +R SQ YR L++ N+ + S L+++ G ++
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILS-- 140
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSG 271
K ++ + ++GF F+++ + A +R + + + G + + +G
Sbjct: 141 --CKVVEENGQSKGFGFVQFDTEQSAVSARSAL-HGSMVYGKKLFVAKFINKDERAAMAG 197
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
VYVKNL VT D L LF +G ++ VVV + G ++R GFV+F +A
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV--MRDGMGRSRGFGFVNFCNPENA 255
Query: 331 MKALKNTEKYELDGQAL 347
KA+++ +L + L
Sbjct: 256 KKAMESLCGLQLGSKKL 272
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 127/283 (44%), Gaps = 35/283 (12%)
Query: 102 SEVYIGGIPHDASEHDL-RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
+ +Y+ + + L R FC G + ++++ ++ ++KGF FV F + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFC-PFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSAR 168
Query: 161 DKLNNTEFKGKKIRCST------------SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPG 208
L+ + GKK+ + +Q +++ N+ + L + S+ G
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT- 227
Query: 209 VTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA---DPR 265
V+ V +++D S RGF F+ + N + A+ + + + +LG+ V A D R
Sbjct: 228 VSSVVVMRDGMGRS--RGFGFVNFCNPENAKKAMESLCG--LQLGSKKLFVGKALKKDER 283
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
N + + +YVKNL ++ + +L+++F +G+I V + G+
Sbjct: 284 REMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
K GFV F+ + +A + + +DG+ + +A+ + D+
Sbjct: 344 KG-FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 119/251 (47%), Gaps = 19/251 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + +E L + IG V +R+ + + ++ G+A+V + N + A A++
Sbjct: 36 ASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALE 95
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN E KG+ R S+ L F+ N+ + ++ L S G ++
Sbjct: 96 CLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKV 155
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ + NS +G+ F+ Y + A+ + +K+ +G + +V+ RN +S
Sbjct: 156 AIDSLGNS---KGYGFVHYTTEESAKEAIEKVNG--MLIGNSQVSVAPFLRRNERTSTVG 210
Query: 274 QV-KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332
V +YV+N P T+D L + F +G IT +++ K + R FV+F + + A
Sbjct: 211 DVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLL---KSDDKGRRFAFVNFVDTNMAKA 267
Query: 333 AL--KNTEKYE 341
A+ +N K+E
Sbjct: 268 AMEGENGVKFE 278
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 114/297 (38%), Gaps = 43/297 (14%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSEN-KGFAFVTFRNVELASKAIDKLNNTEFKGKKI--- 173
L D G + ++ DS N KG+ FV + E A +AI+K+N ++
Sbjct: 140 LYDTFSHFGTILSCKV--AIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVA 197
Query: 174 -------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNR 225
R ST + L++ N P W +DL + S+ G +T + L D K R
Sbjct: 198 PFLRRNERTSTVGDVFTNLYVRNFPDTWTEDDLHQTFSKYGE-ITSLLLKSDDKG----R 252
Query: 226 GFAFIEYHNHKCAEYSRQKMTNPNF--------------KLGTNAPTVSWADPRNVDSSG 271
FAF+ + + A+ + + F K A + D D
Sbjct: 253 RFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRN 312
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+Y+KNL + D L+ LF+ +G +T V G + GFV F+ A
Sbjct: 313 KFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRG-FGFVCFSRPDEAT 371
Query: 332 KALKNTEKYELDGQALECSLAKP---------QADQKSAGGSVSEKPSLLQNYPPHI 379
KA+ + + L LA+ Q ++++ ++P + YPP +
Sbjct: 372 KAVAGMHLKLVKNKPLYVGLAEKREQRASRMQQRNRQNDMMQYGDRPGYVPLYPPEM 428
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 20/257 (7%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
+++GG+ D E L D+ IG VT VR+ + ++ G+ +V F++ A KA+D
Sbjct: 10 IWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQA 69
Query: 162 --KLNNTEFKGKKIRCSTSQAKY---RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
KL + + KI+ S+ + + + +P++ + L+++ S+ G +T + L
Sbjct: 70 GSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFG-RLTAIGLAC 128
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVK 276
D K S RG+A I + + A + ++M ++ A V ++ D Q
Sbjct: 129 DEKGES--RGYARISFEREESAVDAVREMD--GMEMDGQAIVVERYQAQHRDEL-LKQFT 183
Query: 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336
+YVKNL VT ++L+ F +G ++ V Q + +G+V F + +A +A++
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVE- 242
Query: 337 TEKYELDGQALECSLAK 353
EL+G+ EC +AK
Sbjct: 243 ----ELNGK--ECEIAK 253
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 112/272 (41%), Gaps = 42/272 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+ + +P + L++ G +T + + + E++G+A ++F E A A+ ++
Sbjct: 97 ILVKKLPKSVDTYALKEMFSKFGRLTAIGL-ACDEKGESRGYARISFEREESAVDAVREM 155
Query: 164 NNTEFKGKKIRCSTSQAKYR---------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
+ E G+ I QA++R L++ N+ E L+ ++ G V+ +
Sbjct: 156 DGMEMDGQAIVVERYQAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKYGE-VSSAK- 213
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD------ 268
V+D+ + + G ++ + H+ A + +++ G P +V
Sbjct: 214 VRDLGAAQSEAGLGYVAFQKHENAARAVEELN------GKECEIAKAGSPLDVSRFRSRE 267
Query: 269 -------------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
+ S+ +YVK VT ++L++LF+ +G V V K
Sbjct: 268 ERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGV 327
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347
GFV ++++A +A++ EL+G
Sbjct: 328 SRCFGFVSMKDQNAASQAIQ-----ELNGSTF 354
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV---E 154
P S +Y+G + D +E L + S+G V +R+ + + + G+A+V + + +
Sbjct: 17 PLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVG 206
A +A++ LN GK +R S +FI N+ ++ ++ L S G
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG 136
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADP 264
+ ++ D S +G+ F+ + + A+ + Q + K+ P AD
Sbjct: 137 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRAD- 192
Query: 265 RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324
G V+VKNLP + D+L K+ G +T VV + G K GF++F
Sbjct: 193 ---RPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKG-FGFINF 248
Query: 325 AERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ A K ++ E+ G+ L A+ + ++++
Sbjct: 249 KDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREA 284
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 31/274 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ ++ + +KG+ FV F + A +AI +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATDANGV-SKGYGFVHFEDQAAADRAIQTV 172
Query: 164 NNTEFKGKKI-------RCSTSQAK---YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
N E +GK + R Q K +F+ N+P G ++L K+ +E G VT
Sbjct: 173 NQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGE-VTSAV 231
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN------- 266
++KD K SS +GF FI + + +CA + + + ++G A +
Sbjct: 232 VMKDEKGSS--KGFGFINFKDAECAAKCVEALNDK--EIGGKVLYAGRAQKKTEREAMLR 287
Query: 267 --VDSSGAS-----QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
V+ S Q +YVKNL V D L+ LF G IT V G+ K
Sbjct: 288 QKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKG-F 346
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F A +A+ + G+ L +LA+
Sbjct: 347 GFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQ 380
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 99 PHGSEVY----IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
P G +VY + +P + + +L GEVT +MK + S +KGF F+ F++ E
Sbjct: 194 PQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGS-SKGFGFINFKDAE 252
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQAK------------------------YRLFIGNIP 190
A+K ++ LN+ E GK + +Q K L++ N+
Sbjct: 253 CAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLA 312
Query: 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNH 235
+ L+ + + G +T +++KD S ++GF F+ + +H
Sbjct: 313 DEVDDDALRDLFTSCGT-ITSCKVMKD--TSGKSKGFGFVCFTSH 354
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ + + + LRD S G +T ++MK S ++KGF FV F + + A++A
Sbjct: 302 QGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMK-DTSGKSKGFGFVCFTSHDEATRA 360
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N KGK + + +Q K
Sbjct: 361 VTEMNGKMVKGKPLYVALAQRK 382
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 19/273 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
PP S +Y+G + +E L + IG V +R+ + + + G+A+V + N
Sbjct: 43 PPSAS-LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 101
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+A+++LN + K + R SQ + +FI N+ ++ L + G V
Sbjct: 102 RALEQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NV 160
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ D N++G+ F+ Y + AE + + + L V R
Sbjct: 161 LSCKVATD--EHGNSKGYGFVHYETAEAAENAIKNVN--GMLLNDKKVYVGHHISRKERQ 216
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +Y+KN+ VT ++ + LF G +T V+ + G+ + GFV++
Sbjct: 217 SKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRG-FGFVNYE 275
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA+ N + G+ L S A+ +A++
Sbjct: 276 THEEAQKAVDNLNDKDFHGRKLFVSRAQKKAER 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 30/204 (14%)
Query: 88 KKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAF 147
K++ +++ + + +YI I + ++ + + G VT I + ++ ++GF F
Sbjct: 213 KERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEG-RSRGFGF 271
Query: 148 VTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ---------------------AKYR--- 183
V + E A KA+D LN+ +F G+K+ S +Q +KY+
Sbjct: 272 VNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLN 331
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++ N+ + E L+ G +T ++++D K S +GF F+ Y + + A +
Sbjct: 332 LYVKNLDDDVDDEKLRAEFEPFGT-ITSAKVMRDDKGVS--KGFGFVCYSSPEEASKAVA 388
Query: 244 KMTNPNFKLGTNAPTVSWADPRNV 267
+M N +G+ VS A R V
Sbjct: 389 EMNNK--MIGSKPLYVSHAQRREV 410
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G V ++ + +KG+ FV + E A AI +
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGNSKGYGFVHYETAEAAENAIKNV 194
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ + +A++ L+I NI E+ + + E G V
Sbjct: 195 NGMLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQG-NV 253
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + +D + S RGF F+ Y H+ A+ + + + +F VS A +
Sbjct: 254 TSSVIQRDEEGRS--RGFGFVNYETHEEAQKAVDNLNDKDFH--GRKLFVSRAQKKAERE 309
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +YVKNL +V ++L+ FE G IT V G
Sbjct: 310 EELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVS 369
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV ++ A KA+ + + L S A+
Sbjct: 370 KG-FGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQ 406
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L D S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N + K IR SQ L FI N+ R ++ + S G + +
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D K N++G+ F+ + + A S K+ L V PR
Sbjct: 121 VATDEK--GNSKGYGFVHFETEEAANTSIDKVN--GMLLNGKKVYVGKFIPRKEREKELG 176
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN + ++LK+ FE +G+IT V + G+ K GFV F +
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG-FGFVAFETTEA 235
Query: 330 AMKALKNTEKYEL-DGQALECSLAKPQADQK 359
A A++ ++ +G++L + A+ +A+++
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 32/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +KG+ FV F E A+ +IDK+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLF----IGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ R K +LF + N ++ E L++ G +
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK-I 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRN 266
T +++ K ++GF F+ + + AE + Q + + G + A A+ +
Sbjct: 210 TSYKVMS--KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267
Query: 267 VDSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++K +YVKNL + D+L+ F +G IT V + G+ K
Sbjct: 268 ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 327
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F S A A+ + + L +LA+ + ++K+
Sbjct: 328 G-FGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKA 370
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 30/275 (10%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G VY+G + DL+D Q+ G V +++ S KG VT+ E A AI
Sbjct: 88 GCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLESNGRS--KGCGIVTYETEEAAQNAI 145
Query: 161 DKLNNTEFKGKKIRCS-------TSQAK----YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN+TE G+KI S K +R+++GN+ N ++L+ + + G V
Sbjct: 146 ATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVV 205
Query: 210 TGVELVKDMKNSSNNR--GFAFIEYHNHKCAEYSRQKMTNPN------FKLGTNAP---T 258
D+ N R G +EY + A + ++ N F P +
Sbjct: 206 HA-----DVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGS 260
Query: 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318
+S R G+ + + +YV NLP QLK LF G + + + G+ +
Sbjct: 261 ISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRG- 319
Query: 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + + + A +A++ E++G+ +E L K
Sbjct: 320 FGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDK 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G VY+G + + +L+D + G V +++ + + +KG V + E A+
Sbjct: 174 PKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLE-EPNGRSKGCGLVEYATQEEAA 232
Query: 158 KAIDKLNNTEFKGKKIRC---------STSQAKYR------------LFIGNIPRNWGSE 196
KAI +LNNTE +G+ I S S+ R L++GN+P +
Sbjct: 233 KAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQ 292
Query: 197 DLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234
L+ + VG V ++ + S RGF I Y N
Sbjct: 293 QLKDLFRTVGD-VERADIAEYPDGRS--RGFGIIRYTN 327
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S RGF F+ + H+ A + M L V R
Sbjct: 130 VVCDENGS---RGFGFVHFETHEAANQAINTMN--GMLLNDRKVFVGHFKSRQEREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKN ++ + L++LF G+ V V + GQ + GFV+F +
Sbjct: 185 ARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRG-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ N EL G+ L A+ +++++S
Sbjct: 244 AQKAVSNMNGKELGGRVLYVGRAQKRSERQS 274
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 121/286 (42%), Gaps = 39/286 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D + ++GF FV F E A++AI+ +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVC--DENGSRGFGFVHFETHEAANQAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ +++ N + E LQ++ S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTL 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK-LGTNAPTVSWADPRNVD 268
+ V+++ D S RGF F+ + H E +++ ++N N K LG V A R+
Sbjct: 219 S-VKVMVDENGQS--RGFGFVNFEKH---EEAQKAVSNMNGKELGGRVLYVGRAQKRSER 272
Query: 269 SS--------------GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
S Q +YVKNL + ++L+K F +G IT V G
Sbjct: 273 QSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKV--MTEGG 330
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ D + L++ G+ V++M ++ +++G
Sbjct: 174 KSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMV-DENGQSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKR 269
>gi|224153375|ref|XP_002337347.1| predicted protein [Populus trichocarpa]
gi|222838882|gb|EEE77233.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
+V++GG+ A E DLR + EVT+VR+ DS K AF+TF VELA +AI +
Sbjct: 22 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRL--SWDSESKKRVAFLTFATVELARRAICE 79
Query: 163 LNNTEFKGKKIRCSTSQAK---YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK--- 216
+++ GK RC T+Q + L++ NI + W +DL+ ++E GV E++
Sbjct: 80 ISDPVINGK--RCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEY--GVKNYEILTLNP 135
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255
+N NRG+A +++ + K A + + + N G N
Sbjct: 136 ARENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQN 174
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240
++++F+G + + EDL+KV GV V V+ +S + + AF+ + + A
Sbjct: 20 RFKVFVGGLDKYAKEEDLRKVFG----GVEEVTKVRLSWDSESKKRVAFLTFATVELARR 75
Query: 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLK-KLFEHH 299
+ ++++P G T D K +YV N+ + T+D L+ KL E+
Sbjct: 76 AICEISDPVIN-GKRCWTAQIQDGS----------KTLYVPNICKEWTKDDLEDKLAEYG 124
Query: 300 GRITKVV-VPPAKPGQEKNRIGFVHFAERS 328
+ +++ + PA+ +EKNR G+ H RS
Sbjct: 125 VKNYEILTLNPARENKEKNR-GYAHLDFRS 153
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 18/244 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + E L D Q + V +R+ + + + G+A+V F + + A+ A++
Sbjct: 13 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 72
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T GK IR S +FI N+ + ++ L + G V +
Sbjct: 73 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT-VLSCK 131
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD---SS 270
+ D N+ ++G+ F+++ + A+ + +++ N L + R+ + +
Sbjct: 132 IALD--NNGQSKGYGFVQFEQEEAAQNAIKRL---NGMLINDKQVYVGLFVRHQERNRGN 186
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
G+ + VYVKNL T D LK +F +G IT VV G K GFV+F SA
Sbjct: 187 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKC-FGFVNFQSSDSA 245
Query: 331 MKAL 334
A+
Sbjct: 246 AAAV 249
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 42/290 (14%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ V+I + L D + G V +I ++ ++KG+ FV F E A AI
Sbjct: 101 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIAL-DNNGQSKGYGFVQFEQEEAAQNAIK 159
Query: 162 KLNNTEFKGKKI------------RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN K++ R + S +++ N+ +DL+ + + G +
Sbjct: 160 RLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYG-SI 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T +++D S ++ F F+ + + A + + + F N V + S
Sbjct: 219 TSAVVMRDA--SGMSKCFGFVNFQSSDSAAAAVEHLNGATF----NDDKVWYVGKAQRKS 272
Query: 270 SGASQVKA-----------------VYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPA 310
++++A +Y+KNL +V ++LK+LF G IT KV++ P
Sbjct: 273 EREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQ 332
Query: 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
G K GFV F A +AL + + L ++A+ + ++K+
Sbjct: 333 --GLSKGS-GFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKA 379
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ + ++ DL++ G +T +M+ S +K F FV F++ + A+
Sbjct: 189 PKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMR-DASGMSKCFGFVNFQSSDSAAA 247
Query: 159 AIDKLNNTEFK-------GKKIRCSTSQAKYR------------------LFIGNIPRNW 193
A++ LN F GK R S +A+ R L++ N+ +
Sbjct: 248 AVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSV 307
Query: 194 GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF-AFI 230
E L+++ SE G +T +++ D + S GF AF+
Sbjct: 308 NDEKLKELFSEFGT-ITSCKVMLDPQGLSKGSGFVAFL 344
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L D S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N + K IR SQ L FI N+ R ++ + S G + +
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D K N++G+ F+ + + A S K+ L V PR
Sbjct: 121 VATDEK--GNSKGYGFVHFETEEAANTSIDKVN--GMLLNGKKVYVGKFIPRKEREKELG 176
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN + ++LK+ FE +G+IT V + G+ K GFV F +
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG-FGFVAFETTEA 235
Query: 330 AMKALKNTEKYEL-DGQALECSLAKPQADQK 359
A A++ ++ +G++L + A+ +A+++
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 32/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +KG+ FV F E A+ +IDK+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLF----IGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ R K +LF + N ++ E L++ G +
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK-I 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRN 266
T +++ K ++GF F+ + + AE + Q + + G + A A+ +
Sbjct: 210 TSYKVMS--KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267
Query: 267 VDSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++K +YVKNL + D+L+ F +G IT V + G+ K
Sbjct: 268 ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 327
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F S A A+ + + L +LA+ + ++K+
Sbjct: 328 G-FGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKA 370
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 18/266 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +YIG + D +E L + G V +R+ + S + G+A+V F+ A +A+D
Sbjct: 55 ASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 114
Query: 162 KLNNTEFKGKKIRCSTSQ---AKYR-----LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N G+ +R SQ A R +FI N+ R ++ + S G + +
Sbjct: 115 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFG-NILSCK 173
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR--NVDSSG 271
+ D N++G+ F+ + A + +K+ L V PR + G
Sbjct: 174 VATD--EEGNSKGYGFVHFETEASALTAIEKVN--GMLLSDKKVFVGKFQPRAQRMKELG 229
Query: 272 ASQVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
S +K V++KN ++ + +L ++F +G IT VV G+ K GFV F + +
Sbjct: 230 ESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKG-FGFVAFVDPDA 288
Query: 330 AMKALKNTEKYELDGQALECSLAKPQ 355
A+KA+ + L+G L+ S+ + Q
Sbjct: 289 AIKAVDTLNESTLEGTDLKLSVCRAQ 314
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 15/201 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+IG++ + L + S GP V + + +D S + G+A++ + AE +
Sbjct: 57 LYIGDLHPDVTESMLFEKFSMAGP-VLSIRVCRD-NTSRLSLGYAYVNFQQPADAERALD 114
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
M NF++ P + W+ DP + + +++KNL R + + F G
Sbjct: 115 TM---NFEVIHGRPMRIMWSQRDPAARRAGNGN----IFIKNLDRVIDNKSIYDTFSLFG 167
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V + G K GFVHF +SA+ A++ L + + +P+A +
Sbjct: 168 NILSCKVATDEEGNSKG-YGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMK 226
Query: 361 AGGSVSEKPS--LLQNYPPHI 379
G K + ++N+ H+
Sbjct: 227 ELGESGLKYTNVFIKNFGDHL 247
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ I + ++ LR+ + G +T ++M ++ +KGF FV F E A+ A
Sbjct: 339 QGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMV-DENGRSKGFGFVCFEKPEEATAA 397
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N+ K + + +Q K
Sbjct: 398 VTEMNSKMIGAKPLYVALAQRK 419
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 33/285 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + + D G + ++ ++ + +KG+ FV F A AI+K+
Sbjct: 145 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGN-SKGYGFVHFETEASALTAIEKV 203
Query: 164 NNTEFKGKKIRCSTSQAKYR--------------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q + + +FI N + + L ++ S+ G +
Sbjct: 204 NGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----- 264
T ++ D NS +GF F+ + + A + + + +V A
Sbjct: 263 TSAVVMTD--NSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERT 320
Query: 265 ----RNVDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
R ++ +V+ +YVKN+ +T D L++ F + G IT V + G+
Sbjct: 321 AELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRS 380
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K GFV F + A A+ + + L +LA+ + D+++
Sbjct: 381 KG-FGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRA 424
>gi|115479619|ref|NP_001063403.1| Os09g0462700 [Oryza sativa Japonica Group]
gi|113631636|dbj|BAF25317.1| Os09g0462700, partial [Oryza sativa Japonica Group]
Length = 441
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 143/345 (41%), Gaps = 51/345 (14%)
Query: 94 LLALPPHGSE-----VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFV 148
L A+P G + +++G + + E+ L GEV +++++ K + +++G+ FV
Sbjct: 102 LRAVPRGGGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFV 161
Query: 149 TFRNVELASKAID--------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWG 194
F + A K ++ ++N F R + + + +F+G++ +
Sbjct: 162 EFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIA-SDHSIFVGDLASDVN 220
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYS-------- 241
L + S+ V G ++V D N+ ++G+ F+ + + H E +
Sbjct: 221 DTTLLETFSKRYSSVKGAKVVID-ANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRP 279
Query: 242 -RQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
R P GT+ PT S A S G V+V L NV++D L++ F +G
Sbjct: 280 MRIGPATPRKTSGTSGPTGSAA-----RSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYG 334
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ-- 358
I+ V +P K + GFV F +R +A AL+ + Q + S + A++
Sbjct: 335 EISSVKIPVGK------QCGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSWGRNPANKQL 388
Query: 359 KSAGGSVSEKPSLLQNYPPHIGYGLAG---GTYGALGAGFGAAAF 400
+S GS P + GYG G A +GA F
Sbjct: 389 RSDNGSQWNNGMYYAASPFYSGYGYPAPFPADPGMYAAAYGAYPF 433
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 31/279 (11%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
L + + V++ GI E L +G V +IM+ K S + G+ FV F +
Sbjct: 36 LPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDST 94
Query: 155 LASKAIDKLNNTEFKGKKIRCSTS-------QAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
A A D ++ G++++ + S Q Y++F+G + + L K + G
Sbjct: 95 TARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA----- 262
VT ++K + ++G+ F+ + + AE + Q M KL V+W
Sbjct: 155 -VTDARVLK-FTQTGKSKGYGFVTFIRKEDAETAMQMMNGE--KLEGRNIKVNWVTSNIA 210
Query: 263 ----DPRN----VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
P+ +++ +SQ VY+ N+P+NV D LK+L +G I +V + K
Sbjct: 211 SKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKG-- 268
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
F+ F++ SA A+ ++G L CS +
Sbjct: 269 ----YAFIKFSKHESATSAILMCNGKIINGSTLRCSWGR 303
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 20/254 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G+V VR+ + + + G+ +V F N + A++A+D
Sbjct: 35 TSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALD 94
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T + IR S +FI N+ + + L S G + +
Sbjct: 95 VLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFG-LILSCK 153
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA- 272
+ D S +G+ F+++ N + A+ + K+ N L + R D A
Sbjct: 154 IATDASGLS--KGYGFVQFDNEEAAQNAIDKL---NGMLINDKQVYVGHFLRKQDRENAL 208
Query: 273 --SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSS 329
++ VYVKNL + T ++L F +G IT ++ + K+R GFV+F
Sbjct: 209 SKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALI--MRDADGKSRCFGFVNFENPDD 266
Query: 330 AMKALKNTEKYELD 343
A KA++ + D
Sbjct: 267 AAKAVEGLNGKKFD 280
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 31/279 (11%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
L + + V++ GI E L +G V +IM+ K S + G+ FV F +
Sbjct: 36 LPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDST 94
Query: 155 LASKAIDKLNNTEFKGKKIRCSTS-------QAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207
A A D ++ G++++ + S Q Y++F+G + + L K + G
Sbjct: 95 TARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 208 GVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA----- 262
VT ++K + ++G+ F+ + + AE + Q M KL V+W
Sbjct: 155 -VTDARVLK-FTQTGKSKGYGFVTFIRKEDAETAMQMMNGE--KLEGRNIKVNWVTSNIA 210
Query: 263 ----DPRN----VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
P+ +++ +SQ VY+ N+P+NV D LK+L +G I +V + K
Sbjct: 211 SKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKG-- 268
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
F+ F++ SA A+ ++G L CS +
Sbjct: 269 ----YAFIKFSKHESATSAILMCNGKIINGSTLRCSWGR 303
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRREREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 120/283 (42%), Gaps = 33/283 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D ++GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNV 267
+ V++++D NS ++R F F+ + H+ A+ + M +L + +N
Sbjct: 219 S-VKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 268 DSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
Q+K +YVKNL ++ D+L+K F +G IT V G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + + L+K S G + K M +++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGV----ITSAKVMTEGGHSKGFGFVCF 340
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 21/248 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y G + D +E L + IG V +R+ + + ++ G+A++ F NV A +A+D
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTG-V 212
LN + G+ R S L ++ N+ RN ++ L S G ++ V
Sbjct: 109 TLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 168
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
L D K +RGF F+ + + + AE + K+ ++G V+ + D S
Sbjct: 169 ALTPDGK----SRGFGFVHFESDESAEAAIAKLN--GMQIGEKTVYVAQFK-KTADRSDG 221
Query: 273 S--QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
S VY+K++P + T++++++ F G IT + G+ R FV+FAE A
Sbjct: 222 SPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGR---RFAFVNFAEFEQA 278
Query: 331 MKALKNTE 338
A+++ +
Sbjct: 279 RAAVEDMD 286
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L+ G++ + L +V + +GP V + + +D + + G+A+I +HN AE +
Sbjct: 51 LYAGDLAPDVNEAVLYEVFNGIGP-VASIRVCRD-SVTRKSLGYAYINFHNVADAERALD 108
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
+ N+ P + W+ DP + SGA V YVKNL RN+ L F G
Sbjct: 109 TL---NYSPINGRPCRLMWSHRDPA-LRRSGAGNV---YVKNLDRNIDNKALYDTFSLFG 161
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
I V G+ + GFVHF SA A+ ++ + + + K AD +S
Sbjct: 162 NILSCKVALTPDGKSRG-FGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTAD-RS 219
Query: 361 AGGSVSEKPSLLQNYPP 377
G + +++ PP
Sbjct: 220 DGSPKNFTNVYIKHIPP 236
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 20/254 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + ++ L D +G+V VR+ + S + G+ +V + N + A++A++
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN T G IR S +FI N+ + + L S G + +
Sbjct: 85 MLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 143
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D S ++G+ F+++ + + A+ + +K+ N L + R + A+
Sbjct: 144 VATD--PSGQSKGYGFVQFDSEEAAQKAIEKL---NGMLLNDKQVYVGPFLRKQERDTAT 198
Query: 274 ---QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSS 329
+ V+VKNL T++ L K F G IT +VV + G K++ GFV+F
Sbjct: 199 DKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVV--MRDGDGKSKCFGFVNFENAED 256
Query: 330 AMKALKNTEKYELD 343
A KA++ ++D
Sbjct: 257 AAKAVEALNGKKID 270
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V++ + +E DL G +T + +M+ D ++K F FV F N E A+KA++ L
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDG-KSKCFGFVNFENAEDAAKAVEAL 264
Query: 164 NNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWGSEDLQ 199
N + K+ +Q KY L+I N+ + G E L+
Sbjct: 265 NGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLK 324
Query: 200 KVVSEVGPGVTGVELVKDMKNSSNNRGFA 228
++ S G +T ++++D S GF
Sbjct: 325 ELFSPFG-TITSCKVMRDPNGISRGSGFV 352
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 116/268 (43%), Gaps = 18/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 60 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGE 119
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D N++G+ F+ Y + A + + + L V P+
Sbjct: 179 LSCKVAQD--EHGNSKGYGFVHYETDEAASQAIKHVN--GMLLNEKKVYVGHHIPKKDRQ 234
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ + LF G +T + + G+ + GFV+F
Sbjct: 235 SKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRG-FGFVNFT 293
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
+A KA+ + + GQ L A+
Sbjct: 294 THEAAAKAVDDLNGKDFRGQDLYVGRAQ 321
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 29/167 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I ++ ++ + RD + G+VT + + ++ +
Sbjct: 228 IPKKDRQSKFEEMKA---NFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQE-GK 283
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F E A+KA+D LN +F+G+ + +Q K+
Sbjct: 284 SRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKAS 343
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNN 224
L+I N+ E L+++ ++ GP +T ++++D S N
Sbjct: 344 KYQGVNLYIKNLDDEVDDEKLRQLFADFGP-ITSAKVMRDNATESGN 389
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 34/218 (15%)
Query: 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS- 176
L D + G + ++ + + +KG+ FV + E AS+AI +N KK+
Sbjct: 168 LHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 226
Query: 177 -----TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSN 223
Q+K+ +++ NI ++ + + + G VT L +D + S
Sbjct: 227 HIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFG-DVTSSSLARDQEGKS- 284
Query: 224 NRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--------------VDS 269
RGF F+ + H+ A + + +F+ G + V A ++ ++
Sbjct: 285 -RGFGFVNFTTHEAAAKAVDDLNGKDFR-GQDL-YVGRAQKKHEREEELRKSYEAARMEK 341
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
+ Q +Y+KNL V ++L++LF G IT V
Sbjct: 342 ASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKV 379
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRREREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 120/283 (42%), Gaps = 33/283 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D ++GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNV 267
+ V++++D NS ++R F F+ + H+ A+ + M +L + +N
Sbjct: 219 S-VKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 268 DSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
Q+K +YVKNL ++ D+L+K F +G IT V G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + + L+K S G + K M +++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGV----ITSAKVMTEGGHSKGFGFVCF 340
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+V D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRREREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 120/283 (42%), Gaps = 33/283 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + +++ D ++GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNV 267
+ V++++D NS ++R F F+ + H+ A+ + M +L + +N
Sbjct: 219 S-VKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 268 DSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
Q+K +YVKNL ++ D+L+K F +G IT V G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 124/272 (45%), Gaps = 21/272 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV--SWADPRNVDSSG 271
+V D S RGF F+ + H+ A+ Q ++ N L + + R ++
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQ---QAISTMNGMLLNDRKVFVGHFKSRREREAEL 183
Query: 272 ASQVKA---VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
++ A +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 184 GARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHE 242
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + ++ G+ L A+ + ++++
Sbjct: 243 EAQKAVMDMNGMQVSGRLLYVGRAQKRGERQN 274
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 118/285 (41%), Gaps = 37/285 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + +++ D ++GF FV F E A +AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQQAISTM 158
Query: 164 NNTEFKGKKIRC--------------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ + + A +++ N+P + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
+ V++++D +S ++RGF F+ + H+ A+ + M ++ V A R
Sbjct: 219 S-VKVMRD--DSGHSRGFGFVNFEKHEEAQKAVMDMNG--MQVSGRLLYVGRAQKRGERQ 273
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
D Q +YVKNL ++ ++L+K F +G IT V G
Sbjct: 274 NELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGH 331
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKA 376
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P E L+D G++ V++M+ DS ++G
Sbjct: 174 KSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMR-DDSGHSRG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+ +N + G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + E L+K S G + K M +++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGV----ITSAKVMTEGGHSKGFGFVCF 340
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 26/279 (9%)
Query: 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVE 154
+A + +Y+G + D +E L ++G V + + G+A+V F +
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSITC-----HPRSLGYAYVNFLQLA 57
Query: 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVG 206
A KA+D +N KGK IR SQ L FI N+ R+ ++ L + S G
Sbjct: 58 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 117
Query: 207 PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN 266
++ K M + +RG+AF+ + N A+ + ++M K +
Sbjct: 118 KILSS----KVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGTLLK---DCRLFVGRFKSR 170
Query: 267 VDSSGASQVKA-----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321
D Q KA VY+KN + ++LK++F +G+ V V G+ K GF
Sbjct: 171 KDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKG-FGF 229
Query: 322 VHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
V F +A +A++ +++GQ L A+ +A++++
Sbjct: 230 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQA 268
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 39/286 (13%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D ++G+AFV F+N A +AI+++
Sbjct: 95 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDHGSRGYAFVHFQNQIAADRAIEEM 152
Query: 164 NNT----------EFKGKKIRCSTSQAKYRLFIGNIPRNWGSE----DLQKVVSEVGPGV 209
N T FK +K R + Q K F +N+G E L++V S+ G +
Sbjct: 153 NGTLLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTL 212
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD 268
+ VK M +SS ++GF F+ + +H+ A+ + ++M + + V A +
Sbjct: 213 S----VKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKD--INGQLLFVGRAQKKAER 266
Query: 269 SSGASQV--------------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ 314
+ Q+ +Y+KNL + ++L++ F G I++V V + G+
Sbjct: 267 QAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ-EEGR 325
Query: 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
K G + F+ A KA+ L + L +LA+ ++K+
Sbjct: 326 SKG-FGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQKPXERKT 370
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 35/202 (17%)
Query: 87 EKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENKGF 145
K + AE + VYI + + L++ G+ V++M DSS ++KGF
Sbjct: 170 RKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMT--DSSGKSKGF 227
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK------------------------ 181
FV+F + E A +A++++N + G+ + +Q K
Sbjct: 228 GFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRG 287
Query: 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241
+L+I N+ E L++ S G + VK M+ ++GF I + + AE +
Sbjct: 288 AKLYIKNLDETIDDEKLRREFSSFGS----ISRVKVMQEEGRSKGFGLICFSS---AEEA 340
Query: 242 RQKMTNPNFK-LGTNAPTVSWA 262
+ MT N + LG+ ++ A
Sbjct: 341 TKAMTEMNGRILGSKPLNIALA 362
>gi|383860004|ref|XP_003705481.1| PREDICTED: RNA-binding protein 47-like [Megachile rotundata]
Length = 260
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
E+++G IP + E ++ S+G + E+R+M S N+G+ F+ + E A++A+ K
Sbjct: 92 EIFVGSIPRNYYEPEIVYLFSSVGTIYELRLMMD-FSGTNRGYCFIMYSTEEEAARAVAK 150
Query: 163 LNNTE-FKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+ E + GK+I S RL+IG +PR+ + + K + E+ V V + +N
Sbjct: 151 LDQYEIYPGKRIGVVASINNCRLYIGQLPRSMDTTIIVKRIYEITDDVDKVSV---YRNH 207
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-VSWADP 264
+ + + Y H+ A +R+++ + L N V WA+P
Sbjct: 208 NGFVSYVLVSYKTHRGAAMARRRLVPESSTLFKNHQVIVEWANP 251
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 143/310 (46%), Gaps = 25/310 (8%)
Query: 57 IEEEVEE-EVEEEEEDADAGKSGDMQIEDEDEKKKHAELLALPPHGSEVYIGGIPHDASE 115
I+E +E+ + EE++ + + E++ + AE + + +Y+G + +E
Sbjct: 9 IQESLEKLNISEEQQQQPVAATTEQSAEEQGDSSGVAE------NSASLYVGELNPSVNE 62
Query: 116 HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175
L + IG+V+ +R+ + S ++ G+A+V + E KAI++LN T +G+ R
Sbjct: 63 ATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRI 122
Query: 176 STSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGF 227
SQ +FI N+ ++ L S G + ++ D S + F
Sbjct: 123 MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDELGQS--KCF 179
Query: 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNL 283
F+ Y + AE + + + L V + S ++KA +YVKN+
Sbjct: 180 GFVHYETAEAAEAAIENVN--GMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNI 237
Query: 284 PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343
T+++ +KLF +G+IT + + + G+ K GFV+F E +A+KA++ E++
Sbjct: 238 DLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKG-FGFVNFEEHDAAVKAVEELNDKEIN 296
Query: 344 GQALECSLAK 353
GQ + A+
Sbjct: 297 GQKIYVGRAQ 306
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E +E KK E + L G +++ + L + + G +T ++M D
Sbjct: 310 ERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMV-DD 368
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
+ ++KGF FV F E A+KAI ++N K + + +Q K
Sbjct: 369 AGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRK 411
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 44/301 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + A E L GEV ++I++ K + + +G+ FV F + A + +
Sbjct: 22 LWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQTY 81
Query: 164 NNTEFKGKKIRCSTSQAKY-------------RLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N T+ G + + A + +F+G++ + LQ+ P V
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYPSVR 141
Query: 211 GVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYS---------RQKMTNP----NFKL 252
G ++V D N+ ++G+ F+++ N E + R M P +F+
Sbjct: 142 GAKVVTD-PNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKTTSFQQ 200
Query: 253 GTNAPTVSWADP------RNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306
P + P + V + G ++V NL N T++ L++ F G I V
Sbjct: 201 QYAVPKAFYPAPAYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTFLQLGEIASVK 260
Query: 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVS 366
+P + GFV FA R+SA +A++ + + + Q + S K Q + G V
Sbjct: 261 IPAGR------GCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWGKKQDLTATWGQQVD 314
Query: 367 E 367
+
Sbjct: 315 Q 315
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,963,950,848
Number of Sequences: 23463169
Number of extensions: 317745431
Number of successful extensions: 5513964
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31784
Number of HSP's successfully gapped in prelim test: 23432
Number of HSP's that attempted gapping in prelim test: 3868833
Number of HSP's gapped (non-prelim): 797259
length of query: 418
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 273
effective length of database: 8,957,035,862
effective search space: 2445270790326
effective search space used: 2445270790326
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 78 (34.7 bits)