BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014815
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQK 412
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 158 bits (399), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 11/264 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+E+++G IP D E +L + G + ++R+M + N+G+AFVTF E A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ NN E + GK I S A RLF+G+IP++ E + + S+V G+T V L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP + D ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 336 NTEKYELDGQALECSLAKPQADQK 359
+L+G+ +E AKP DQK
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQK 322
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKVE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVEL 155
A P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKLE 108
Query: 156 ASKAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVEL 214
A AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 215 VKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGAS 273
+ + NRGFAF+EY +H+ A +R+K+ +L + V WA+P VD S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMK 332
VK +YV+NL + +++ ++K F + + P A +K R FVHF+ R A++
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAVE 281
Query: 333 ALKNTEKYELDGQALECSLAKP 354
A+K LDG +E +LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 30/310 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGL 383
N EL+G LE +LAKP Q K GGS V+++PS + + P Y L
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTL 356
Query: 384 A--GGTYGAL 391
A G Y AL
Sbjct: 357 AYYGYPYNAL 366
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP 354
N EL+G LE +LAKP
Sbjct: 300 NLNGTELEGSCLEVTLAKP 318
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 141/259 (54%), Gaps = 13/259 (5%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFVT+ + A +A
Sbjct: 71 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG-KNRGYAFVTYCHKGEAKRA 129
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ E++ + +++V GV V +
Sbjct: 130 VRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 189
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 190 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKI 249
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T+D +KK F G + +V ++ FVHFA R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMN 301
Query: 336 NTEKYELDGQALECSLAKP 354
+ EL+G LE +LAKP
Sbjct: 302 SLNGTELEGSCLEVTLAKP 320
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 159/310 (51%), Gaps = 30/310 (9%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G EV++G IP D E +L +++G + E+R+M D +N+G+AFV + + A +A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDG-KNRGYAFVMYCHKHEAKRA 127
Query: 160 IDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
+ +LNN E + G+ + S RLFIG IP+ ++ + +++V GV V +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASA 187
Query: 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQVKA 277
+ NRGFAF+EY +H+ A +R+K+ +L + V WA+P +VD VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 278 VYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
+YV+NL T++ +K+ F G + +V ++ FVHF R A+ A+
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMN 299
Query: 336 NTEKYELDGQALECSLAKP---------QADQKSAGGS---VSEKPSLLQNYPPHIGYGL 383
N EL+G LE +LAKP Q K GGS V+++PS + + P Y L
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP---YTL 356
Query: 384 A--GGTYGAL 391
A G Y AL
Sbjct: 357 AYYGYPYNAL 366
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 145/259 (55%), Gaps = 10/259 (3%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G+EV++G IP D E +L + G + ++R+M S +N+G+AF+TF E A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
+A+ ++ E + GK + S A RLF+G+IP+N E++ + S+V G+ V L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQV 275
+ NRGF F+EY +HK A +R+++ + K+ N TV WADP D ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335
K ++V+NL VT++ L+K F G++ +V ++ FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 336 NTEKYELDGQALECSLAKP 354
E++G+ +E LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 156/320 (48%), Gaps = 42/320 (13%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G + E R+M + S EN+G+AFV + E A +AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 104
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
L+N E + GK I S RLFIG+IP++ E++Q+ + +V GV V + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
NRGFAF+EY +HK A +R+K+ F+L + V WA+P + +D +V+ +YV
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 224
Query: 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKALK 335
+NL + T++ L+ F KPG ++ F+HF R A+ AL+
Sbjct: 225 RNLMLSTTEETLRSEFSQ-----------LKPGSVERVKKLTDYAFIHFYNREDALTALE 273
Query: 336 NTEKYELDGQALECSLAKPQADQKSAGGSVSEKPSLLQNYPPHIGYGLAGG--------- 386
+ +DG +E +LAKP S G+ P N G AGG
Sbjct: 274 SMNGKVIDGSPIEVTLAKP----ASKDGNKRFGPRNCHN-----GVTAAGGYGDSNFLFR 324
Query: 387 -----TYGALGAGFGAAAFA 401
T GA+G G A A +
Sbjct: 325 TRNDMTIGAMGNGLNAHALS 344
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323
P DS+ + +++ LPR++ +D+L L E G+I ++ + G + FV
Sbjct: 44 PPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRG-YAFVT 102
Query: 324 FAERSSAMKALKNTEKYEL 342
F+ + A A+K YE+
Sbjct: 103 FSNKQEAKNAIKQLNNYEI 121
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 11/260 (4%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P G E++IG +P D E +L C+ IG++ E+R+M + + N+G+AFVTF N + A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGN-NRGYAFVTFSNKQEAK 110
Query: 158 KAIDKLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI +LNN E + G+ + S RLF+G IP+ E++ + +V GV V +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR-NVDSSGASQV 275
+ + NRGFAF+EY +H+ A +R+++ +L + V WA+P VD S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKAL 334
K +YV+NL + +++ ++K F + P A +K R FVHF+ R A++A+
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-------IKPGAVERVKKIRDYAFVHFSNREDAVEAM 283
Query: 335 KNTEKYELDGQALECSLAKP 354
K LDG +E +LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 11/256 (4%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 162 KLNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +Y
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTE 338
V+NL + T++ +K F P A +K R FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFK-------PGAVERVKKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFSKFKPGAVERV--------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162
EV++G IP D E +L + G++ E R+M + S EN+G+AFV + E A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 163 LNNTEFK-GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221
LNN E + GK I S RLFIG IP+ E++ + +V GV V + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVYV 280
+ NRGFAF+EY +H+ A +R+K+ F+L + V WADP + VD +VK +YV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 281 KNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338
+NL + T++ +K F G + +V ++ FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERV--------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 339 KYELDGQALECSLAKP 354
+DG ++E +LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
EV++G IP D E L G++ E R+M + S EN+G+AFV + N E A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 162 KLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKN 220
LNN E +GK I S RLFIG+IP+ E++ + + +V GV V + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 221 SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP-RNVDSSGASQVKAVY 279
+ NRGFAF+ Y +H+ A +R+K+ F+L + V+WA P + VD +VK +Y
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEETMQKVKVLY 239
Query: 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-----QEKNRIGFVHFAERSSAMKAL 334
V+NL + T++ +K F + KPG ++ FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 335 KNTEKYELDGQALECSLAKP----QADQKSAGGSVSEKPSLLQNY 375
+DG +E +LAKP A +++ G ++ L N+
Sbjct: 289 SVMNGRLIDGARIEVTLAKPVNKEAAWRQNGNGHMNANSECLLNF 333
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 124/265 (46%), Gaps = 18/265 (6%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G+ +Y+G + SE L D IG V+ +R+ + ++ + G+A+V F + E KAI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 161 DKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGV 212
++LN T KGK R SQ L +I N+ ++ L + S G +
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGA 272
++ D S RGF F+ + N A + + + + V+ + S
Sbjct: 156 KVATDENGVS--RGFGFVHFENESDARDAIEAVD--GMLMNDQEVYVALHVSKKDRQSKL 211
Query: 273 SQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
+VKA VYVKN+ + +Q++ ++LF +G+IT V+ G+ + GFV+F + +
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG-FGFVNFEDHA 270
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A KA+ + E GQ L A+
Sbjct: 271 AAAKAVDELNELEFKGQKLYVGRAQ 295
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD-MKNSSNNRGFAFIEYHNHKCAEYSR 242
L++G + L + S +G V+ + + +D + N+S G+A++ +H+H+ +
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIG-SVSSIRVCRDAITNTS--LGYAYVNFHDHEAGPKAI 96
Query: 243 QKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHH 299
+++ N+ L P + W+ DP ++ G+ + Y+KNL + L + F
Sbjct: 97 EQL---NYTLIKGKPCRIMWSQRDP-SLRKKGSGNI---YIKNLHPAIDNKSLHETFSTF 149
Query: 300 GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359
G I V + G + GFVHF S A A++ + ++ Q + +L + D++
Sbjct: 150 GNILSCKVATDENGVSRG-FGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQ 208
Query: 360 S 360
S
Sbjct: 209 S 209
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + + L++ G +T ++M+ ++ ++GF FV F E A+KA
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMR-DETGNSRGFGFVCFSTPEEATKA 378
Query: 160 IDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQ 199
I + N GK + + +Q K + RN ++ +Q
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK------EVRRNQLAQQIQ 412
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L ++G V +RI + + + + G+A+V F + A KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 162 KLNNTEFKGKKIRCSTSQ--AKYR------LFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK IR SQ A R +FI N+ ++ ++ L + S G ++
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-- 127
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---S 270
K M + ++G+AF+ + N A+ + ++M K G + + ++ ++ S
Sbjct: 128 --KVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK-GCKVFVGRFKNRKDREAELRS 184
Query: 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
AS+ VY+KN ++ ++LK +F +G+ V V G+ K GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA++ +++GQ + A+ + ++++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L + + G++ ++M D +KG+AFV F+N A +AI+++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 164 NNTEFKGKKIRCST------SQAKYR--------LFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KG K+ +A+ R ++I N + E L+ V S+ G +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 210 TGVELVKDMKNSS-NNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNA 256
+ VK M +SS ++GF F+ + +H+ A+ + ++M + K+ A
Sbjct: 218 S----VKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Query: 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + Q +Y+KNL + ++L+ F G I++V V + GQ K
Sbjct: 274 ELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSK 332
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
G + F+ A KA+ L + L +LA+
Sbjct: 333 G-FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS-ENK 143
++ K + AEL + + VYI D + L+D G+ V++M DSS ++K
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM--TDSSGKSK 230
Query: 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK---------------------- 181
GF FV+F + E A KA++++N + G+ I +Q K
Sbjct: 231 GFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 182 --YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239
+L+I N+ E L+ S G + VK M+ ++GF I + + E
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGS----ISRVKVMQEEGQSKGFGLICFSS---PE 343
Query: 240 YSRQKMTNPNFK-LGTNAPTVSWA 262
+ + MT N + LG+ +++ A
Sbjct: 344 DATKAMTEMNGRILGSKPLSIALA 367
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GK 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 421 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 461
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 222
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ + VT ++ +K+FE G IT + + G+ + GFV+F+
Sbjct: 223 SKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 281
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I + ++ + R + GE+T + + ++ +
Sbjct: 216 ISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GK 271
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F + A A+D++N+ E KG+K+ +Q K+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H A+ + +M + K V A ++
Sbjct: 260 TSATLSRDQEGKS--RGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHERE 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF G IT V
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 419 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 459
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 19/249 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P S +Y+G + + SE L + +G V+ +R+ + ++ + +A+V + N A +
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D LNNT +GK R SQ L FI N+ + + L S G +
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG-NIL 125
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++V D NSS +GF F+ Y + A+ + K+ + N V ++
Sbjct: 126 SCKVVTDDGNSS--KGFGFVHYETQESADKAIAKVNG----MMINGQKVFVGPFKSSKER 179
Query: 271 G-ASQVK--AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
G ++VK V+ KNL +V DQLK+L + +G IT + + G+ K GF +F
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFESA 238
Query: 328 SSAMKALKN 336
+A ++N
Sbjct: 239 EAAKNVVEN 247
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 127/298 (42%), Gaps = 35/298 (11%)
Query: 108 GIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167
GI H A L D + G + +++ D + +KGF FV + E A KAI K+N
Sbjct: 108 GIDHKA----LYDTFSAFGNILSCKVVT-DDGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 168 FKGKKI----------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
G+K+ R ++ K+ +F N+ + G + L++++ + G +T + ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG----- 271
D K S GFA N + AE ++ + N N K+ P + + ++
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 272 ---ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328
Q +Y+KN+ ++ D+L+++F G IT +V GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 329 SAMKALKNTEKYELDGQALECSLAKPQADQKSAGGSVSE----KPSLLQNYPPHIGYG 382
A +A+ + + L +LA+ + D + A + K + Q PP G G
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVALAQ-RKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG 393
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +YI I LR+ G +T +MK ++ +KGF FV + + A++A
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N K + + +Q K
Sbjct: 342 VTEMNGRMIGTKPLYVALAQRK 363
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 18/253 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + + ++ L D +G V VR+ + + + G+ +V F N + A++AI
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN GK IR S +FI N+ + + L S G + +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ D +S ++G+ F++Y N + A+ + +K+ L V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLN--GMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 274 QVKA--VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERSSA 330
+ K VYVKNL + T D LK F +G+IT VV K G+ K++ GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 268
Query: 331 MKALKNTEKYELD 343
+A+++ ++ D
Sbjct: 269 ARAVESLNGHKFD 281
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 39/308 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D S G + ++ S ++KG+ FV + N E A KAI+KL
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 164 NNTEFKGKKI----------RCSTS-QAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
N K++ R ST+ + K+ +++ N+ + +DL+ E G +T
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITS 243
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-----------KLGTNAPTVS 260
++KD + S +GF F+ + N A + + + F K +
Sbjct: 244 AVVMKDGEGKS--KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301
Query: 261 WADPRNV-DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319
+N+ +++ Q +YVKNL +++ ++LK++F G +T V G K
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS- 360
Query: 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK-------SAGGSVSEKPSL- 371
GFV FA A +A+ ++ + L ++A+ + D++ S V+ +PS+
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 372 --LQNYPP 377
+ YPP
Sbjct: 421 PRMPVYPP 428
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 219
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KN+ ++VT+++ ++LFE G IT + + G+ + GFV+F+
Sbjct: 220 SKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFS 278
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ + E+ Q L A+
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI ++ E+ +++ + G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + +M + T V A ++
Sbjct: 257 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVDEMNEKEIR--TQKLYVGRAQKKHERE 312
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI I D +E + R+ + GE+T + + ++ +
Sbjct: 213 ISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GK 268
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A+D++N E + +K+ +Q K+
Sbjct: 269 SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKH 309
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
K ++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 20/265 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + SIG+V +R+ + + + G+A+V + + E KA++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KGK R SQ + +FI N+ ++ L + G + +
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILSCK 166
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+ +D N++G+ F+ Y + A + + + L V P+ S
Sbjct: 167 VAQD--ELGNSKGYGFVHYETAEAANNAIKHVN--GMLLNEKKVFVGHHIPKKERMSKFE 222
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFAERS 328
++KA +YVKN+ +VT + ++LFE HG IT + A+ Q K+R GFV++
Sbjct: 223 EMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--ARDDQGKSRGFGFVNYIRHE 280
Query: 329 SAMKALKNTEKYELDGQALECSLAK 353
+A A+ + E GQ L A+
Sbjct: 281 AAAVAVDHLNDIEFKGQKLYVGRAQ 305
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+ I D ++ D R+ + G++T I + D +++GF FV + E A+ A+D
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIAR-DDQGKSRGFGFVNYIRHEAAAVAVD 287
Query: 162 KLNNTEFKGKKIRCSTSQAKY 182
LN+ EFKG+K+ +Q K+
Sbjct: 288 HLNDIEFKGQKLYVGRAQKKH 308
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 36/234 (15%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + H L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNTEFKGKKI----------RCST---SQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ R S +A + +++ NI + ED +++ + G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + +D + S RGF F+ Y H+ A + + + FK V A ++
Sbjct: 256 TSASIARDDQGKS--RGFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVV 307
++ Q +Y+KNL +V ++L+ +F G IT KV++
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F N + A+KA+ ++N +GK + + +Q K
Sbjct: 423 KSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 164 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 218
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + +++++ +++FE G IT + + G+ + GFV+++
Sbjct: 219 SKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRG-FGFVNYS 277
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ GQ L A+
Sbjct: 278 THDSAQAAVDEMNDKEVKGQKLYVGRAQ 305
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + SE + R + GE+T + + ++ +
Sbjct: 212 ISKKDRQSKFEEMKA---NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GK 267
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + + A A+D++N+ E KG+K+ +Q K+
Sbjct: 268 SRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKH 308
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ + E+ +++ + G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ Y H A+ + +M + K V A ++
Sbjct: 256 TSATLSRDQEGKS--RGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L+++F +G IT V
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 421 KSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 224
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + VY+KNL + D+ +K+FE G IT + + G+ + GFV+F+
Sbjct: 225 SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFS 283
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 284 THESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I N+ ++ +K+ + G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 262 TSATLSRDQEGKS--RGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL ++ ++L++LF +G IT V
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VYI + + + + R + GE+T + + ++ +
Sbjct: 218 ISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GK 273
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 274 SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKH 314
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
K ++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 429 KPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D N++G+ F+ Y + AE + + + N L + +S D +
Sbjct: 167 SCKVAQD--EFGNSKGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 221
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ +VT+++ +K+FE G IT + G+ + GFV+++
Sbjct: 222 SKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRG-FGFVNYS 280
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A+ E+ Q L A+
Sbjct: 281 THESAQAAVDEMHDKEVKTQKLYVGRAQ 308
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI + E+ +K+ + G +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-I 258
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ Y H+ A+ + +M + K T V A ++
Sbjct: 259 TSATLSRDPEGKS--RGFGFVNYSTHESAQAAVDEMHDKEVK--TQKLYVGRAQKKHERE 314
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V ++L++LF +G IT V
Sbjct: 315 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +YI I D +E + R + GE+T + + + +
Sbjct: 215 ISKKDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GK 270
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
++GF FV + E A A+D++++ E K +K+ +Q K+
Sbjct: 271 SRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKH 311
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 426 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 15/267 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
S +Y+G + +E L D + V +R+ + + + G+A+V F N E AS+A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + + IR S K +FI N+ + ++ L + S G + +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D+ S +G+ F+++ + A+ + K+ N K V D +S
Sbjct: 177 VAMDVVGRS--KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 234
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
VYVKNLP+ +T D+LKK F +G I+ VV + G ++ GFV+F +A
Sbjct: 235 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEAAA 293
Query: 332 KALKNTEKYELDGQALECSLAKPQADQ 358
A++ L L A+ ++D+
Sbjct: 294 VAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + VY+ +P + ++ +L+ G+++ +MK + S ++ F FV F + E A+
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAV 294
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKY------------------------RLFIGNIPRNWG 194
A++K+N + +Q K L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSN-NRGFAFIEYHNHKCAEYSRQKM 245
E L+++ SE G V K M NS +RGF F+ Y N + A + ++M
Sbjct: 355 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 402
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 17/267 (6%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + N +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A++ LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
++ +D N++G+ F+ Y + A+ + + + L V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVN--GMLLNDKKVFVGHHIAKKDRQS 226
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326
++KA VYVKN+ ++ T+++ + LFE G IT + + GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTS 286
Query: 327 RSSAMKALKNTEKYELDGQALECSLAK 353
+A A++ + GQ L A+
Sbjct: 287 HDNAAAAVEALNDKDFKGQKLYVGRAQ 313
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 28/161 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + VY+ I D +E + RD + GE+T + + +S +
Sbjct: 219 IAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + + A+ A++ LN+ +FKG+K+ +Q K+
Sbjct: 276 SRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218
L+I N+ + E L+++ S G +T ++++D
Sbjct: 336 KYQGVNLYIKNLSDDIDDEKLRELFSSYGT-ITSAKVMRDF 375
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A AI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ +++ NI ++ E+ + + + G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S +RGF F+ + +H A + + + + +FK V A ++
Sbjct: 263 TSATLARDAE-SGKSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ ++L++LF +G IT V
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 52/134 (38%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK------------------------ 135
G +YI + D + LR+ S G +T ++M+
Sbjct: 338 QGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETK 397
Query: 136 -------------GKDSSEN---------------KGFAFVTFRNVELASKAIDKLNNTE 167
KD+ EN KGF FV F + + ASKA+ ++N
Sbjct: 398 EEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRM 457
Query: 168 FKGKKIRCSTSQAK 181
GK + + +Q K
Sbjct: 458 VHGKPLYVALAQRK 471
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P + +Y+G + +E L + SIG V +R+ + + + G+A+V F N+E K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 159 AIDKLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KG+ R SQ L FI N+ ++ L S G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS 270
V ++ N+ +G+ F+ + + + A + + + L V R S
Sbjct: 197 CKVAVDELGNA---KGYGFVHFDSVESANAAIEHVN--GMLLNDKKVYVGHHVSRRERQS 251
Query: 271 GASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR-IGFVHFA 325
+KA VY+KNL +T+ + LF G IT + + K +K R GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA+ E G+ L A+
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQ 337
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 83 EDEDEKKKHAELLALPP----HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD 138
E E+E +K E + L G ++I + + + L+ + G +T +IM +
Sbjct: 341 EREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT-DE 399
Query: 139 SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV + E A+KA+ ++N GK + + +Q K
Sbjct: 400 QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 117/268 (43%), Gaps = 17/268 (6%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P + +Y+G + +E L + IG V +R+ + + + G+A+V +
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 158 KAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
KA+++LN T KG+ R SQ + +FI N+ ++ L + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
++ +D + N++G+ F+ Y + A + + + L V P+
Sbjct: 176 LSCKVAQD--ENGNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 231
Query: 270 SGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
S ++KA +YVKN+ VT D+ + LFE +G +T + + + GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
A KA++ + E GQ L A+
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRAQ 319
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 28/160 (17%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE 141
I +D + K E+ A + + +Y+ I + ++ + R + G+VT + + +++ +
Sbjct: 225 IPKKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 142 NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------------- 182
++GF FV F + E ASKA+ +LN EF G+ + +Q K+
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKAS 341
Query: 183 -----RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKD 217
L+I N+ E L+++ SE GP +T ++++D
Sbjct: 342 KYQGVNLYIKNLDDEVDDEKLRQLFSEFGP-ITSAKVMRD 380
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E AS+AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ Q+K+ +++ NI ++ + + + G V
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DV 268
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + + +RGF F+ + +H+ A + Q++ F G N V A ++
Sbjct: 269 TSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQELNEKEFH-GQNL-YVGRAQKKHERE 325
Query: 267 ----VDSSGASQVKA-------VYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
A Q KA +Y+KNL V ++L++LF G IT V
Sbjct: 326 EELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 120/268 (44%), Gaps = 20/268 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
PH + +Y+G + +E L + SIG+V +R+ + + + G+A+V + + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 159 AIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
A+D+LN T KGK R SQ + +FI N+ ++ L + G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT-----VSWADPR 265
++ +D S +G+ F+ Y + AE + + + N L + +S D +
Sbjct: 158 SCKVAQDEFGVS--KGYGFVHY---ETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325
+ + +Y+KN+ V ++ +KLFE G IT + G+ + GFV+F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFS 271
Query: 326 ERSSAMKALKNTEKYELDGQALECSLAK 353
SA A++ E+ Q L A+
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + + +KG+ FV + E A+ AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 164 NNT------EFKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N F G I Q+K+ ++I NI E+ +K+ + G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+ A+ + ++M + + + V A ++
Sbjct: 250 TSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +YVKNL +V D+L++LF +G IT V
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 82 IEDEDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-S 140
I +D + K E+ A + + +YI I + + + R + GE+T + +DS
Sbjct: 206 ISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATL--SRDSEG 260
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY 182
+++GF FV F E A A++++N+ E + +K+ +Q K+
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKH 302
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 141 ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181
++KGF FV F + + ASKA+ ++N GK + + +Q K
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 21/290 (7%)
Query: 78 GDMQIEDEDEKKKHAELLALPPHGS-EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG 136
G+ Q D D A P S +Y+G + +E L + IG V +R+ +
Sbjct: 40 GEYQTADPDTAGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRD 99
Query: 137 KDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGN 188
+ + G+A+V + + KA+++LN T KG+ R SQ + +FI N
Sbjct: 100 TITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 159
Query: 189 IPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248
+ ++ L + G + ++ +D + N++G+ F+ Y + A + + +
Sbjct: 160 LDVAIDNKALHDTFAAFG-NILSCKVAQD--ENGNSKGYGFVHYETDEAAAQAIKHVN-- 214
Query: 249 NFKLGTNAPTVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITK 304
N L V + P+ S ++KA +YVKN+ T ++ + LF +G +T
Sbjct: 215 NMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTS 274
Query: 305 VVVPPAKPGQEKNR-IGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ A+ + K+R GFV+F A KA++ E GQ L A+
Sbjct: 275 SSL--ARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQ 322
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + L D + G + ++ + ++ +KG+ FV + E A++AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 164 NNTEFKGKKIRCST------SQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
NN KK+ Q+K+ +++ NI E+ + + ++ G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T L +D + S RGF F+ + H+CA + +++ F+ G + V A ++
Sbjct: 273 TSSSLARDSEGKS--RGFGFVNFTTHECAAKAVEELNGKEFR-GQDL-YVGRAQKKHERE 328
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307
++ + Q +Y+KNL ++ D+L+++F +G IT V
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238
Q+ L++G + + L ++ S++G V + + +D + + G+A++ Y++
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDTI-TRRSLGYAYVNYNSTSDG 119
Query: 239 EYSRQKMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295
E + +++ N+ L P + W+ DP + +G V ++KNL + L
Sbjct: 120 EKALEEL---NYTLIKGRPCRIMWSQRDPA-LRKTGQGNV---FIKNLDVAIDNKALHDT 172
Query: 296 FEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355
F G I V + G K GFVH+ +A +A+K+ L+ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 356 ADQKS 360
D++S
Sbjct: 232 KDRQS 236
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 44/126 (34%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK-------------GKDS------- 139
G +YI + D + LR G +T ++M+ GKD
Sbjct: 347 QGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGE 406
Query: 140 ------------------------SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175
++KGF FV F N + A+KA+ ++N +GK +
Sbjct: 407 QAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYV 466
Query: 176 STSQAK 181
+ +Q K
Sbjct: 467 ALAQRK 472
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Query: 86 DEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF 145
D ++ E + + + +Y+G + +E L + IG+V +R+ + S ++ G+
Sbjct: 51 DSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGY 110
Query: 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSED 197
A+V + +E KAI++LN T +G+ R SQ +FI N+ ++
Sbjct: 111 AYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKA 170
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257
L S G + V++ D + ++ F F+ Y + A+ + + + L
Sbjct: 171 LHDTFSAFG-KILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVN--GMLLNDREV 225
Query: 258 TVSWADPRNVDSSGASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313
V + S ++KA +YVKN+ T+ + ++LF G+IT + + G
Sbjct: 226 YVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG 285
Query: 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ K GFV+F E +A KA++ E++GQ + A+
Sbjct: 286 KSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 33/277 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G++ V++ D ++K F FV + E A AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVAT-DDLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 164 NNTEFKGKKI-------------RCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +++ + +A Y +++ NI + ++ +++ + G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG-KI 274
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269
T + L KD + S +GF F+ + H+ A + +++ + G R
Sbjct: 275 TSIYLEKDAEGKS--KGFGFVNFEEHEAAAKAVEELNDKEIN-GQKIYVGRAQKKRERTE 331
Query: 270 SGASQVKAV-------------YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
Q +AV +VKNL + ++L++ F+ G IT V G+ K
Sbjct: 332 ELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSK 391
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + ++G+ L +LA+
Sbjct: 392 G-FGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQ 427
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + + G +T ++M D+ ++KGF FV F E A+KA
Sbjct: 349 QGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMV-DDAGKSKGFGFVCFSTPEEATKA 407
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 408 ITEMNQRMVNGKPLYVALAQRK 429
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 45/313 (14%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-- 161
++IG + E+ + GE T ++++ K + +++G+ F+ F + +A + +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 162 ------------KLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGV 209
+LN + + R T + +F+G++ L V V
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLG----TNAPTVS 260
G ++V D + + ++G+ F+ + + E + Q + ++G NA +
Sbjct: 182 KGAKVVLD-RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 261 WADPRNVDSSGAS----QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
A +N + A ++V L NVT D+LK +F G + V +PP K
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK----- 295
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP---QADQK--SAGGSVSEKPSL 371
R GFV +A ++SA AL +L GQ++ S + Q+DQ + GG P
Sbjct: 296 -RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQ- 353
Query: 372 LQNYPPHIGYGLA 384
P GYG A
Sbjct: 354 -----PQGGYGYA 361
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + +++GG+ + ++ +L+ GE+ V+I GK FV + N A
Sbjct: 257 PNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEH 310
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN T+ G+ IR S
Sbjct: 311 ALSVLNGTQLGGQSIRLS 328
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G +P D +E L D S G V +R+ + + + G+A+V F+ A +A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N + K IR SQ L FI N+ R ++ + S G + +
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D K N++G+ F+ + + A S K+ L V PR
Sbjct: 121 VATDEK--GNSKGYGFVHFETEEAANTSIDKVN--GMLLNGKKVYVGKFIPRKEREKELG 176
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
A VYVKN + ++LK+ FE +G+IT V + G+ K GFV F +
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKG-FGFVAFETTEA 235
Query: 330 AMKALKNTEKYEL-DGQALECSLAKPQADQK 359
A A++ ++ +G++L + A+ +A+++
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 32/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
V+I + + D + G + ++ + +KG+ FV F E A+ +IDK+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 164 NNTEFKGKKI----------RCSTSQAKYRLF----IGNIPRNWGSEDLQKVVSEVGPGV 209
N GKK+ R K +LF + N ++ E L++ G +
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK-I 209
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN---APTVSWADPRN 266
T +++ K ++GF F+ + + AE + Q + + G + A A+ +
Sbjct: 210 TSYKVMS--KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267
Query: 267 VDSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
++K +YVKNL + D+L+ F +G IT V + G+ K
Sbjct: 268 ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 327
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F S A A+ + + L +LA+ + ++K+
Sbjct: 328 G-FGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKA 370
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 14/262 (5%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + SE L D IG V+ +R+ + + + G+A+V F + E KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN T KG+ R SQ L FI N+ + ++ L S G + +
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSK 156
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP--NFKLGTNAPTVSWADPRNVDSSG 271
+ D S +GF F+ + A+ + + N + AP +S + +
Sbjct: 157 IATDENGKS--KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEET 214
Query: 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331
+ +YVKN+ T +Q ++LF G I + G+ K GFV++ + A+
Sbjct: 215 KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG-FGFVNYEKHEDAV 273
Query: 332 KALKNTEKYELDGQALECSLAK 353
KA++ EL+G+ L A+
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQ 295
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + + L + G +T ++M+ ++ ++KGF FV F E A+KA
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKA 378
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I + N GK + + +Q K
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 33/284 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + + E+ L GE+ ++++ K + + +G+ F+ F + A + +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 164 NNT---EFKGKKIRCSTSQAK----------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
NN F + R + + Y +F+G++ + L + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 211 GVELVKDMKNSSNNRGFAFIEYHN-----HKCAEYSRQKMTNPNFKLGTNAPTVSWADPR 265
G ++V D + + +G+ F+ + + E + + ++G A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 266 NVDSSGASQV--------KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ S A+ V V+V L +VT D LK +F +G I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKSA 361
R GFV F+E+S A +AL+ +L G + S + ++++S
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSG 340
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158
P+ + V++GG+ ++ L++ GE+ V+I GK FV F A +
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEE 311
Query: 159 AIDKLNNTEFKGKKIRCS 176
A+ LN + G +R S
Sbjct: 312 ALRMLNGVQLGGTTVRLS 329
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 17/270 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +RI + +S + +A+V F++ + A A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KGK +R SQ L F+ N+ ++ ++ L VS G +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
+V D S +G+ F+ + H+ AE + +KM N G + + ++ +
Sbjct: 130 VVCDENGS---KGYGFVHFETHEAAERAIKKM-NGMLLNGRKVFVGQFKSRKEREAELGA 185
Query: 274 QVK---AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330
+ K VY+KN ++ ++LK LF G V V + G+ K GFV F A
Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 331 MKALKNTEKYELDGQALECSLAKPQADQKS 360
KA+ EL+G+ + A+ + ++++
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 110/276 (39%), Gaps = 33/276 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+++ + + L D + G + ++ D + +KG+ FV F E A +AI K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERAIKKM 158
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N G+K+ +++ ++I N + E L+ + + GP +
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF------------KLGTNAP 257
+ V+++ D S ++GF F+ + H+ A+ + +M K+
Sbjct: 219 S-VKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
+ D QV +YVKNL + ++L+K F G IT V G
Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV--MMEGGRSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + + L +LA+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ K++ AEL A VYI D + L+D G V++M +S ++KG
Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKG 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV+F E A KA+D++N E GK+I +Q K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ E L+K S G + K M ++GF F+ +
Sbjct: 293 VVNLYVKNLDDGIDDERLRKAFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
+Y+ + + LR G +T ++M + +KGF FV F + E A+KA+ ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 164 NNTEFKGKKIRCSTSQAK 181
N K + + +Q K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG+V +R+ + + ++ G+A+V F E KAI+
Sbjct: 51 ASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIE 110
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
LN + +G+ R SQ L FI N+ ++ L + G ++
Sbjct: 111 DLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKV 170
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
DM S + F F+ Y + AE + + + L V + S
Sbjct: 171 ATDDMGIS---KCFGFVHYETAEAAEAAIENVN--GMLLNDREVYVGKHISKKDRESKFE 225
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA VY KN+ + ++++ KKLFE +G+IT + + G+ K GFV+F S
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKG-FGFVNFENHES 284
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A+KA+ E++GQ + A+
Sbjct: 285 AVKAVDELNDKEINGQKIYVGRAQ 308
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
++I + L D + G++ ++ D +K F FV + E A AI+
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVAT-DDMGISKCFGFVHYETAEAAEAAIENV 199
Query: 163 ----LNNTE-FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN+ E + GK I ++K+ ++ NI ++ E+ +K+ G +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGK-I 258
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCA-----EYSRQKMTNPNFKLGTNAPTV----- 259
T + L KD + S +GF F+ + NH+ A E + +++ +G
Sbjct: 259 TSIYLEKDHEGKS--KGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEE 316
Query: 260 ---SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316
+ + R ++ Q +++KNL + ++L++ F+ G IT V + G+ K
Sbjct: 317 LKKQYENTR-LEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSK 375
Query: 317 NRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
GFV F+ A KA+ + + G+ L +LA+
Sbjct: 376 G-FGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQ 411
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + L + + G +T R+M ++ ++KGF FV F + E A+KA
Sbjct: 333 QGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMV-DETGKSKGFGFVCFSSPEEATKA 391
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 392 ITEMNQRMIYGKPLYVALAQRK 413
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 146/344 (42%), Gaps = 60/344 (17%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++IG + E L GEV V+I++ K + +++ + FV F A K +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 164 N-----NTE--FKGKKIRCSTSQAK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210
N NTE F+ ST + + + +F+G++ + L+ + P +
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLK 205
Query: 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN--------FKLGTNAP----- 257
G ++V D N+ +++G+ F+ + + +E SR MT N ++G P
Sbjct: 206 GAKVVVD-ANTGHSKGYGFVRFGDE--SERSR-AMTEMNGVYCSSRAMRIGVATPKKPSA 261
Query: 258 ---------------TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302
+ A S G S ++V L VT ++L++ F G +
Sbjct: 262 HEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEV 321
Query: 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK--- 359
V +P K GFV F++RSSA +A++ + QA+ S + A+++
Sbjct: 322 VSVKIPAGKG------CGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRT 375
Query: 360 SAGGSVSEKPSLLQNYPPHIGYGLA----GGTYGALGAGFGAAA 399
+G + + QNY + GYG + G Y A GA +GA++
Sbjct: 376 DSGSQWNGGYNGRQNYGGY-GYGASQNQDSGMY-ATGAAYGASS 417
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 19/271 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + D +E L + G + +R+ + + + G+A++ F+ A +A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 162 KLNNTEFKGKKIRCSTSQAKYRL--------FIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+N KG+ IR SQ L FI N+ + ++ L S G + +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD----S 269
+ D S RGF F+ + H+ A+ + M L V R
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMN--GMLLNDRKVFVGHFKSRREREAELG 184
Query: 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ A + +YVKNLP +V + L+ LF G++ V V G + GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQKS 360
A KA+ + E+ G+ L A+ + ++++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 119/283 (42%), Gaps = 33/283 (11%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + ++ D ++GF FV F E A +AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 164 NNTEFKGKKIRCSTSQAKY--------------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N +K+ +++ +++ N+P + + LQ + S+ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF--KLGTNAPTVSWADPRNV 267
+ V++++D NS ++R F F+ + H+ A+ + M +L + +N
Sbjct: 219 S-VKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 268 DSSGASQVKA----------VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317
Q+K +YVKNL ++ D+L+K F +G IT V G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
GFV F+ A KA+ + + L +LA+ + ++K+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 85 EDEKKKHAELLALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKG 144
+ +++ AEL A + +Y+ +P D E L+D G++ V++M+ +S ++
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRC 232
Query: 145 FAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK----------------------- 181
F FV F E A KA+ +N E G+ + +Q +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQ 292
Query: 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ N+ + + L+K S G + K M +++GF F+ +
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160
G +Y+ + + LR G +T ++M + +KGF FV F + E A+KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 161 DKLNNTEFKGKKIRCSTSQAK 181
++N K + + +Q K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 18/266 (6%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ + +Y+G + + +E L D +G ++ +R+ + + + G+A+V + + E KA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 160 IDKLNNTEFKGKKIRCSTS--------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
I +LN E G+ R S + +FI N+ ++ L + S G V
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGE-VLS 166
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
++ D + N+RGF F+ + A+ + + + + V+ P+ S
Sbjct: 167 CKVALD--ENGNSRGFGFVHFKEESDAKDAIEAVN--GMLMNGLEVYVAMHVPKKDRISK 222
Query: 272 ASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
+ KA +YVKN+ T ++ ++LF +G I + G+ K GFV+F +
Sbjct: 223 LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKG-FGFVNFVDH 281
Query: 328 SSAMKALKNTEKYELDGQALECSLAK 353
++A KA++ E QAL A+
Sbjct: 282 NAAAKAVEELNGKEFKSQALYVGRAQ 307
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L + + GEV ++ ++ + ++GF FV F+ A AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGN-SRGFGFVHFKEESDAKDAIEAV 198
Query: 164 NNTEFKG----------KKIRCST---SQAKY-RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N G KK R S ++A + +++ NI E+ +++ S+ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
+ L KD + +GF F+ + +H A + +++ FK + A V A +
Sbjct: 259 SAA-LEKDAEGKP--KGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 266 ----------NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q +++KNL ++ ++LK+ F +G IT V + G
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + + G+ L ++A+
Sbjct: 374 KG-FGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQ 410
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243
L++G + N L V S +GP ++ + + +D ++ G+A++ Y +++ + + Q
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGP-ISSIRVCRDAVTKAS-LGYAYVNYTDYEAGKKAIQ 109
Query: 244 KMTNPNFKLGTNAPT-VSWA--DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG 300
++ N+ P + W+ DP + G+ + ++KNL + L + F G
Sbjct: 110 EL---NYAEINGRPCRIMWSERDPA-IRKKGSGNI---FIKNLHPAIDNKALHETFSTFG 162
Query: 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360
+ V + G + GFVHF E S A A++ ++G + ++ P+ D+ S
Sbjct: 163 EVLSCKVALDENGNSRG-FGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRIS 221
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + + L++ G +T R+M+ ++ + +KGF FV F + E A+KA
Sbjct: 332 QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKA 390
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ + N GK + + +Q K
Sbjct: 391 MTEKNQQIVAGKPLYVAIAQRK 412
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2
Length = 371
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELAS 157
P GSEV+IG IP D E L QS+G++ E R+M S N+GFA+ + + A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAI 131
Query: 158 KAIDKLNNTEF-KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216
AI LN E KG I S K L + +P N+ L+ V+ EV GV+ + L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISL-- 189
Query: 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261
+ ++ A ++Y +H+ A +++ + + L TV+W
Sbjct: 190 HPSPTKESQVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 18/264 (6%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG+V+ +R+ + S ++ G+A+V + +E KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + +G+ R SQ +FI N+ ++ L S G ++
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKV 171
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
DM S + F F+ Y + AE + + + L V + S
Sbjct: 172 ATDDMGQS---KCFGFVHYETAEAAEAAIENVN--GMLLNDREVFVGKHISKKDRESKFE 226
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
++KA +YVKN+ +++ LKKLF +G IT + + G+ K GFV++ +
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKG-FGFVNYEGHEA 285
Query: 330 AMKALKNTEKYELDGQALECSLAK 353
A+KA++ E++GQ + A+
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQ 309
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
++I + L D + G++ ++ D ++K F FV + E A AI+
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVAT-DDMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 163 ----LNNTE-FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN+ E F GK I ++K+ +++ NI + EDL+K+ + G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYG-AI 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR---- 265
T + L KD + S +GF F+ Y H+ A + +++ + ++ V A +
Sbjct: 260 TSIYLEKDAEGKS--KGFGFVNYEGHEAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 315
Query: 266 --------NVDSSGASQVKAV--YVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
N S+ + V ++KNL + ++L++ F+ G IT V + G+
Sbjct: 316 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKS 375
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F+ A KA+ + G+ L +LA+
Sbjct: 376 KG-FGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQ 412
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G ++I + L + + G +T R+M ++ ++KGF FV F + E A+KA
Sbjct: 334 QGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMV-DETGKSKGFGFVCFSSPEEATKA 392
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N F GK + + +Q K
Sbjct: 393 ITEMNQRMFFGKPLYVALAQRK 414
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 129/307 (42%), Gaps = 58/307 (18%)
Query: 98 PPHGS-----------EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFA 146
PP GS ++IG + + E+ L GE+ V++++ K + + +G+
Sbjct: 9 PPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68
Query: 147 FVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY------------RLFIGNIPRNWG 194
F+ F + A + + N T+ G ++ + A + +F+G++ +
Sbjct: 69 FIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 195 SEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY-----HNHKCAEYS-------- 241
LQ+ V G ++V D ++ ++G+ F+++ N AE +
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 242 -RQKMTNPNFKLGTNAPTVSWA-DPRNVDSSGASQVKA-------------VYVKNLPRN 286
R P +G V+ A P V S+ A+ V+A + V NL +N
Sbjct: 188 MRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQN 247
Query: 287 VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346
VT+++LKK F G + V +P K G+V F R SA +A++ + + QA
Sbjct: 248 VTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQRMQGQVIGQQA 301
Query: 347 LECSLAK 353
+ S +K
Sbjct: 302 VRISWSK 308
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 19/269 (7%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ +Y+G + +E L + IG V +R+ + + + G+A+V F N +A++
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 162 KLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVE 213
+LN + + + R SQ + +FI N+ ++ L + G +
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG----NIL 162
Query: 214 LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGAS 273
K N + + G+ F+ Y + AE + + + L V PR +
Sbjct: 163 SCKVATNETGSLGYGFVHYETAEAAEAAIKHVN--GMLLNDKKVYVGHHIPRKERQAKIE 220
Query: 274 QVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329
+ +A VY KN+ VT D+ +KLF G+IT V+ + G+ K GFV+F + +
Sbjct: 221 ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKG-FGFVNFEDHNE 279
Query: 330 AMKALKNTEKYELDGQALECSLAKPQADQ 358
A KA+ + GQ L + A+ ++++
Sbjct: 280 AQKAVDELHDSDFKGQKLFVARAQKKSER 308
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 28/155 (18%)
Query: 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161
+ VY + + ++ + G++T + + +D ++KGF FV F + A KA+D
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDG-KSKGFGFVNFEDHNEAQKAVD 285
Query: 162 KLNNTEFKGKKIRCSTSQ---------------------AKYR---LFIGNIPRNWGSED 197
+L++++FKG+K+ + +Q AK++ L++ NIP ++ E
Sbjct: 286 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 345
Query: 198 LQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEY 232
L++ + G +T ++++ S +RGF F+ Y
Sbjct: 346 LREEFAPFG-AITSCKIMR--APSGVSRGFGFVCY 377
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +Y+ IP + LR+ G +T +IM+ S ++GF FV + E A+KA
Sbjct: 328 QGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAP-SGVSRGFGFVCYSAPEEANKA 386
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
+ ++N + + + +Q K
Sbjct: 387 VSEMNGKMLDNRPLYVALAQRK 408
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 36/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163
++I + L D + G + ++ + S G+ FV + E A AI +
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGS--LGYGFVHYETAEAAEAAIKHV 194
Query: 164 NNTEFKGKKIRCS------TSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
N KK+ QAK ++ N+ ++ +K+ ++ G +
Sbjct: 195 NGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFG-KI 253
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV---------- 259
T L +D S +GF F+ + +H A+ + ++ + +FK G
Sbjct: 254 TSCVLQRDEDGKS--KGFGFVNFEDHNEAQKAVDELHDSDFK-GQKLFVARAQKKSEREE 310
Query: 260 ----SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
S+ +N + Q +Y+KN+P + ++L++ F G IT + A G
Sbjct: 311 ELRRSYEAAKN-EKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVS 369
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
+ GFV ++ A KA+ LD + L +LA+
Sbjct: 370 RG-FGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQ 406
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 18/266 (6%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
+ + +Y+G + +E L + IG+V+ +R+ + S ++ G+A+V + E KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 160 IDKLNNTEFKGKKIRCSTSQ--------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211
I++LN +G+ R SQ +FI N+ ++ L S G +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGK-ILS 168
Query: 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG 271
++ D S + F F+ Y + AE + + + L V + S
Sbjct: 169 CKVATDEFGQS--KCFGFVHYETAEAAEAAIENVN--GMLLNDREVFVGKHISKKDRESK 224
Query: 272 ASQVKA----VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327
++KA +YVKN+ N +++ +KLF G+IT + + + G+ K GFV+F +
Sbjct: 225 FEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKG-FGFVNFEDH 283
Query: 328 SSAMKALKNTEKYELDGQALECSLAK 353
SA+KA++ E++GQ + A+
Sbjct: 284 ESAVKAVEELNDKEINGQKIYVGRAQ 309
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 35/278 (12%)
Query: 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK- 162
++I + L D + G++ ++ + ++K F FV + E A AI+
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAT-DEFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 163 ----LNNTE-FKGKKIRCSTSQAKY--------RLFIGNIPRNWGSEDLQKVVSEVGPGV 209
LN+ E F GK I ++K+ +++ NI N+ E +K+ S G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 210 TGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN--- 266
T + L KD S +GF F+ + +H+ A + +++ + ++ V A +
Sbjct: 260 TSIYLEKDQDGKS--KGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 267 -----------VDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315
++ Q ++VKNL + ++L++ F+ G IT V + G+
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 316 KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353
K GFV F A KA+ ++G+ L +LA+
Sbjct: 376 KG-FGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQ 412
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKA 159
G +++ + L + + G +T ++M ++ ++KGF FV F E A+KA
Sbjct: 334 QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMV-DEAGKSKGFGFVCFTTPEEATKA 392
Query: 160 IDKLNNTEFKGKKIRCSTSQAK 181
I ++N GK + + +Q K
Sbjct: 393 ITEMNTRMINGKPLYVALAQRK 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,236,240
Number of Sequences: 539616
Number of extensions: 7948463
Number of successful extensions: 159534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2425
Number of HSP's successfully gapped in prelim test: 1649
Number of HSP's that attempted gapping in prelim test: 74892
Number of HSP's gapped (non-prelim): 38242
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)