Query 014815
Match_columns 418
No_of_seqs 390 out of 3106
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 9.8E-53 2.1E-57 367.8 30.7 258 96-361 78-337 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-47 2.9E-52 358.1 32.2 256 100-357 2-351 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 4.4E-46 9.6E-51 353.5 34.3 252 98-358 55-310 (578)
4 TIGR01628 PABP-1234 polyadenyl 100.0 3.8E-43 8.2E-48 346.4 35.1 253 102-358 1-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 7.8E-43 1.7E-47 284.7 23.8 254 100-355 40-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 6.5E-40 1.4E-44 269.4 23.0 225 100-359 5-242 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-38 2.5E-43 306.4 30.3 240 100-356 1-352 (481)
8 KOG0127 Nucleolar protein fibr 100.0 3.2E-38 6.9E-43 283.1 23.5 250 101-355 5-378 (678)
9 TIGR01622 SF-CC1 splicing fact 100.0 8.8E-37 1.9E-41 294.7 30.0 249 98-355 86-448 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 8.9E-37 1.9E-41 276.8 27.4 174 98-359 104-279 (346)
11 KOG0144 RNA-binding protein CU 100.0 6.2E-38 1.4E-42 273.7 18.9 255 100-357 33-506 (510)
12 TIGR01645 half-pint poly-U bin 100.0 5.3E-35 1.2E-39 278.2 29.4 159 99-261 105-280 (612)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.7E-35 5.9E-40 288.4 28.3 245 100-355 174-502 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-35 1.2E-39 281.0 28.8 240 101-355 96-480 (481)
15 KOG0123 Polyadenylate-binding 100.0 2.4E-31 5.2E-36 242.4 22.1 241 102-356 2-247 (369)
16 KOG0123 Polyadenylate-binding 100.0 4.1E-31 9E-36 240.9 20.4 249 102-359 77-353 (369)
17 KOG0124 Polypyrimidine tract-b 100.0 4.6E-29 1E-33 213.7 19.2 247 102-352 114-532 (544)
18 KOG0127 Nucleolar protein fibr 100.0 3.6E-29 7.7E-34 225.2 13.4 235 100-337 116-516 (678)
19 TIGR01645 half-pint poly-U bin 100.0 7.7E-28 1.7E-32 229.5 21.1 173 181-357 107-286 (612)
20 KOG0110 RNA-binding protein (R 100.0 1.7E-27 3.7E-32 221.4 18.3 249 100-357 384-695 (725)
21 KOG4212 RNA-binding protein hn 100.0 3.1E-26 6.8E-31 200.8 23.3 145 100-248 43-279 (608)
22 KOG0131 Splicing factor 3b, su 99.9 2.1E-27 4.6E-32 184.6 12.8 173 100-359 8-181 (203)
23 KOG0147 Transcriptional coacti 99.9 2.8E-27 6.1E-32 214.2 13.2 246 100-355 178-528 (549)
24 KOG0144 RNA-binding protein CU 99.9 3E-27 6.5E-32 207.1 12.3 174 182-361 35-212 (510)
25 KOG0148 Apoptosis-promoting RN 99.9 7E-27 1.5E-31 192.8 13.3 153 102-264 63-237 (321)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.6E-25 3.6E-30 209.2 22.5 169 180-356 2-172 (352)
27 KOG4211 Splicing factor hnRNP- 99.9 6.2E-25 1.4E-29 196.4 24.0 243 98-353 7-356 (510)
28 TIGR01622 SF-CC1 splicing fact 99.9 5.7E-25 1.2E-29 212.5 21.6 171 180-355 88-266 (457)
29 KOG0109 RNA-binding protein LA 99.9 3.9E-25 8.4E-30 184.4 14.3 151 102-358 3-153 (346)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 5.4E-24 1.2E-28 203.1 23.5 190 100-301 137-367 (578)
31 KOG0146 RNA-binding protein ET 99.9 2.3E-25 5.1E-30 183.3 12.0 248 95-358 13-368 (371)
32 KOG4205 RNA-binding protein mu 99.9 9.7E-25 2.1E-29 191.7 16.0 178 100-361 5-182 (311)
33 KOG0145 RNA-binding protein EL 99.9 8.3E-25 1.8E-29 179.4 14.1 171 179-357 39-211 (360)
34 TIGR01628 PABP-1234 polyadenyl 99.9 7.7E-24 1.7E-28 209.3 18.5 167 183-356 2-168 (562)
35 KOG0117 Heterogeneous nuclear 99.9 2.5E-23 5.4E-28 183.5 19.1 188 153-358 44-251 (506)
36 KOG0110 RNA-binding protein (R 99.9 5E-23 1.1E-27 191.9 14.9 221 100-353 226-596 (725)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-22 3.9E-27 198.0 19.5 167 180-356 174-376 (509)
38 KOG1190 Polypyrimidine tract-b 99.9 1.5E-20 3.3E-25 164.1 17.9 244 99-359 26-377 (492)
39 KOG0124 Polypyrimidine tract-b 99.9 6.8E-21 1.5E-25 163.8 12.4 171 182-356 114-291 (544)
40 PLN03134 glycine-rich RNA-bind 99.8 5.5E-20 1.2E-24 146.2 15.2 85 273-357 32-116 (144)
41 KOG1365 RNA-binding protein Fu 99.8 1.8E-20 3.8E-25 162.3 12.3 251 99-356 58-363 (508)
42 KOG4206 Spliceosomal protein s 99.8 2.7E-19 6E-24 145.6 18.4 206 102-353 10-220 (221)
43 KOG0105 Alternative splicing f 99.8 1.2E-18 2.7E-23 136.0 19.3 181 99-351 4-186 (241)
44 KOG1548 Transcription elongati 99.8 9.3E-18 2E-22 144.0 19.9 205 98-357 131-354 (382)
45 PLN03134 glycine-rich RNA-bind 99.8 2.5E-18 5.4E-23 136.8 11.2 82 100-181 33-114 (144)
46 KOG0120 Splicing factor U2AF, 99.8 9.5E-18 2.1E-22 154.9 16.1 244 100-354 174-491 (500)
47 KOG0147 Transcriptional coacti 99.8 7.3E-19 1.6E-23 159.9 8.5 171 182-357 180-360 (549)
48 KOG1456 Heterogeneous nuclear 99.7 2.6E-16 5.6E-21 136.3 19.1 243 97-357 27-365 (494)
49 KOG1190 Polypyrimidine tract-b 99.7 9.9E-16 2.1E-20 134.3 19.9 234 103-354 152-490 (492)
50 TIGR01659 sex-lethal sex-letha 99.7 4.1E-16 9E-21 142.1 15.9 84 272-355 104-187 (346)
51 KOG0105 Alternative splicing f 99.7 2.2E-16 4.7E-21 123.5 10.5 80 274-356 5-84 (241)
52 KOG0149 Predicted RNA-binding 99.7 2.5E-16 5.4E-21 128.6 10.2 78 276-354 13-90 (247)
53 KOG4211 Splicing factor hnRNP- 99.7 2.1E-15 4.6E-20 135.8 16.8 165 182-356 11-183 (510)
54 PF00076 RRM_1: RNA recognitio 99.7 3.2E-16 6.8E-21 109.8 8.9 70 104-174 1-70 (70)
55 KOG0106 Alternative splicing f 99.7 1.5E-16 3.2E-21 131.4 7.4 169 102-354 2-170 (216)
56 KOG0149 Predicted RNA-binding 99.7 1.8E-16 3.9E-21 129.5 7.7 78 101-179 12-89 (247)
57 PF00076 RRM_1: RNA recognitio 99.7 4.8E-16 1E-20 108.9 8.7 70 278-348 1-70 (70)
58 KOG1457 RNA binding protein (c 99.7 4.7E-15 1E-19 119.7 15.0 223 98-342 31-273 (284)
59 KOG0122 Translation initiation 99.7 5.2E-16 1.1E-20 127.2 9.1 82 274-355 188-269 (270)
60 KOG0122 Translation initiation 99.6 7.1E-16 1.5E-20 126.4 9.2 82 100-181 188-269 (270)
61 KOG4207 Predicted splicing fac 99.6 1.5E-15 3.2E-20 121.1 10.2 85 273-357 11-95 (256)
62 PF14259 RRM_6: RNA recognitio 99.6 1.9E-15 4.1E-20 105.7 9.0 70 104-174 1-70 (70)
63 PF14259 RRM_6: RNA recognitio 99.6 3.3E-15 7.2E-20 104.4 9.0 70 278-348 1-70 (70)
64 COG0724 RNA-binding proteins ( 99.6 9.8E-15 2.1E-19 132.8 13.9 169 101-335 115-285 (306)
65 KOG0121 Nuclear cap-binding pr 99.6 2.8E-15 6E-20 110.1 8.1 80 275-354 36-115 (153)
66 KOG0107 Alternative splicing f 99.6 9.3E-15 2E-19 113.7 10.7 78 275-357 10-87 (195)
67 PLN03120 nucleic acid binding 99.6 6E-15 1.3E-19 125.2 10.4 78 275-356 4-81 (260)
68 KOG0125 Ataxin 2-binding prote 99.6 3.9E-15 8.5E-20 127.1 9.1 84 270-355 91-174 (376)
69 KOG0114 Predicted RNA-binding 99.6 1.3E-14 2.8E-19 102.5 10.0 80 274-356 17-96 (124)
70 KOG0126 Predicted RNA-binding 99.6 3E-16 6.5E-21 122.5 1.7 105 240-352 8-112 (219)
71 PLN03120 nucleic acid binding 99.6 8.9E-15 1.9E-19 124.2 10.4 76 101-180 4-79 (260)
72 KOG0121 Nuclear cap-binding pr 99.6 4E-15 8.6E-20 109.3 7.0 82 98-179 33-114 (153)
73 KOG0126 Predicted RNA-binding 99.6 2.2E-16 4.9E-21 123.2 -0.1 80 100-179 34-113 (219)
74 KOG0113 U1 small nuclear ribon 99.6 5.3E-14 1.1E-18 118.8 13.6 93 266-358 92-184 (335)
75 KOG1456 Heterogeneous nuclear 99.6 1.8E-12 4E-17 112.7 23.0 234 106-355 127-491 (494)
76 KOG0113 U1 small nuclear ribon 99.6 1.6E-14 3.5E-19 121.8 9.0 80 100-179 100-179 (335)
77 KOG0114 Predicted RNA-binding 99.6 2.9E-14 6.4E-19 100.6 8.7 81 98-181 15-95 (124)
78 KOG4207 Predicted splicing fac 99.5 9.4E-15 2E-19 116.6 6.5 79 101-179 13-91 (256)
79 KOG0125 Ataxin 2-binding prote 99.5 1.5E-14 3.1E-19 123.7 8.0 82 98-181 93-174 (376)
80 PLN03121 nucleic acid binding 99.5 4.4E-14 9.6E-19 117.8 10.1 78 99-180 3-80 (243)
81 PLN03213 repressor of silencin 99.5 2.9E-14 6.4E-19 128.1 9.5 75 276-354 11-87 (759)
82 PLN03213 repressor of silencin 99.5 2.8E-14 6.1E-19 128.2 9.3 78 100-181 9-88 (759)
83 KOG0107 Alternative splicing f 99.5 2.5E-14 5.5E-19 111.3 7.5 76 100-180 9-84 (195)
84 smart00362 RRM_2 RNA recogniti 99.5 2.1E-13 4.6E-18 95.7 9.7 72 103-176 1-72 (72)
85 KOG0111 Cyclophilin-type pepti 99.5 2.5E-14 5.4E-19 115.2 5.3 85 275-359 10-94 (298)
86 PLN03121 nucleic acid binding 99.5 1.8E-13 3.8E-18 114.3 10.3 78 275-356 5-82 (243)
87 smart00362 RRM_2 RNA recogniti 99.5 2.6E-13 5.7E-18 95.2 9.5 72 277-350 1-72 (72)
88 KOG0130 RNA-binding protein RB 99.5 1.3E-13 2.8E-18 102.3 7.2 84 274-357 71-154 (170)
89 KOG4212 RNA-binding protein hn 99.5 5.3E-12 1.1E-16 112.1 17.8 172 180-356 43-295 (608)
90 smart00360 RRM RNA recognition 99.5 4.3E-13 9.3E-18 93.8 8.8 71 106-176 1-71 (71)
91 smart00360 RRM RNA recognition 99.5 4.5E-13 9.7E-18 93.7 8.5 71 280-350 1-71 (71)
92 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.5E-18 111.4 5.6 83 100-182 9-91 (298)
93 KOG0130 RNA-binding protein RB 99.4 1.9E-13 4E-18 101.5 6.0 80 100-179 71-150 (170)
94 PF13893 RRM_5: RNA recognitio 99.4 1.3E-12 2.9E-17 86.5 8.7 56 292-352 1-56 (56)
95 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.8E-17 91.0 9.9 74 277-351 1-74 (74)
96 KOG0108 mRNA cleavage and poly 99.4 5.7E-13 1.2E-17 123.0 8.5 80 102-181 19-98 (435)
97 cd00590 RRM RRM (RNA recogniti 99.4 2.7E-12 5.9E-17 90.5 10.0 74 103-177 1-74 (74)
98 KOG0116 RasGAP SH3 binding pro 99.4 2.7E-12 5.8E-17 117.9 12.2 82 276-358 289-370 (419)
99 KOG0131 Splicing factor 3b, su 99.4 5.3E-13 1.1E-17 104.7 6.4 79 275-353 9-87 (203)
100 KOG0108 mRNA cleavage and poly 99.4 8.3E-13 1.8E-17 122.0 8.8 83 276-358 19-101 (435)
101 KOG0128 RNA-binding protein SA 99.4 1.1E-13 2.5E-18 132.5 2.1 235 98-359 568-819 (881)
102 KOG4660 Protein Mei2, essentia 99.4 4.3E-12 9.3E-17 116.6 11.7 72 98-174 72-143 (549)
103 smart00361 RRM_1 RNA recogniti 99.4 2.8E-12 6.2E-17 89.0 7.9 62 289-350 2-70 (70)
104 KOG0129 Predicted RNA-binding 99.3 3.6E-11 7.8E-16 109.7 15.9 184 98-351 256-450 (520)
105 smart00361 RRM_1 RNA recogniti 99.3 6.4E-12 1.4E-16 87.2 8.3 61 115-175 2-69 (70)
106 COG0724 RNA-binding proteins ( 99.3 6E-12 1.3E-16 114.4 10.2 80 275-354 115-194 (306)
107 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.4E-16 82.0 7.6 56 118-178 1-56 (56)
108 KOG0146 RNA-binding protein ET 99.3 4.6E-12 9.9E-17 105.4 5.7 85 97-181 281-365 (371)
109 KOG0415 Predicted peptidyl pro 99.3 4.6E-12 1E-16 109.4 5.0 83 98-180 236-318 (479)
110 KOG4210 Nuclear localization s 99.3 2.4E-11 5.1E-16 107.5 9.2 181 100-358 87-267 (285)
111 KOG0109 RNA-binding protein LA 99.2 1.2E-11 2.6E-16 104.3 6.0 72 276-355 3-74 (346)
112 KOG4206 Spliceosomal protein s 99.2 6.8E-11 1.5E-15 96.9 8.1 80 276-358 10-93 (221)
113 KOG4307 RNA binding protein RB 99.2 1.8E-10 4E-15 108.1 11.6 80 100-179 433-512 (944)
114 KOG1365 RNA-binding protein Fu 99.2 3.8E-11 8.2E-16 105.0 6.2 143 102-248 162-347 (508)
115 KOG4208 Nucleolar RNA-binding 99.2 8.5E-11 1.8E-15 94.7 7.6 80 276-355 50-130 (214)
116 KOG0415 Predicted peptidyl pro 99.2 4.8E-11 1E-15 103.3 6.5 85 273-357 237-321 (479)
117 KOG4307 RNA binding protein RB 99.2 4.3E-10 9.2E-15 105.7 13.1 162 184-352 314-511 (944)
118 KOG4208 Nucleolar RNA-binding 99.2 1E-10 2.3E-15 94.1 7.3 81 100-180 48-129 (214)
119 KOG4454 RNA binding protein (R 99.1 9.2E-12 2E-16 100.6 1.2 142 97-342 5-150 (267)
120 KOG0112 Large RNA-binding prot 99.1 9.4E-11 2E-15 113.3 7.3 165 97-358 368-534 (975)
121 KOG0153 Predicted RNA-binding 99.1 3.3E-10 7.1E-15 98.2 8.9 77 272-354 225-302 (377)
122 KOG0120 Splicing factor U2AF, 99.1 6E-10 1.3E-14 103.8 10.0 151 100-251 288-480 (500)
123 KOG0132 RNA polymerase II C-te 99.1 3.2E-10 7E-15 108.0 8.1 76 100-181 420-495 (894)
124 KOG0132 RNA polymerase II C-te 99.0 6.2E-10 1.3E-14 106.1 8.4 78 275-358 421-498 (894)
125 KOG4661 Hsp27-ERE-TATA-binding 99.0 6.2E-10 1.3E-14 102.3 7.6 81 100-180 404-484 (940)
126 KOG4205 RNA-binding protein mu 99.0 1.3E-09 2.7E-14 96.7 8.2 81 101-182 97-177 (311)
127 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.8E-14 94.6 7.8 76 99-180 226-302 (377)
128 KOG1457 RNA binding protein (c 99.0 5.8E-09 1.2E-13 84.9 10.4 87 275-361 34-124 (284)
129 KOG0226 RNA-binding proteins [ 99.0 8.4E-10 1.8E-14 91.6 5.2 171 181-356 96-271 (290)
130 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.5E-09 3.2E-14 99.9 7.2 81 274-354 404-484 (940)
131 KOG0128 RNA-binding protein SA 98.9 1.9E-10 4.1E-15 110.8 -0.6 136 101-250 667-802 (881)
132 PF04059 RRM_2: RNA recognitio 98.9 2.2E-08 4.7E-13 72.7 8.8 79 276-354 2-86 (97)
133 PF04059 RRM_2: RNA recognitio 98.8 3.4E-08 7.3E-13 71.7 9.3 78 102-179 2-85 (97)
134 KOG0533 RRM motif-containing p 98.8 4.7E-08 1E-12 83.3 11.5 83 275-358 83-165 (243)
135 KOG0533 RRM motif-containing p 98.8 2.4E-08 5.3E-13 85.0 8.4 80 100-180 82-161 (243)
136 KOG4660 Protein Mei2, essentia 98.8 8.6E-09 1.9E-13 95.3 5.9 74 270-348 70-143 (549)
137 KOG0226 RNA-binding proteins [ 98.7 1.5E-08 3.2E-13 84.4 5.0 82 98-179 187-268 (290)
138 KOG4209 Splicing factor RNPS1, 98.7 7.6E-08 1.6E-12 82.4 9.3 81 274-355 100-180 (231)
139 KOG1548 Transcription elongati 98.7 5E-08 1.1E-12 84.9 8.0 79 275-354 134-220 (382)
140 KOG4676 Splicing factor, argin 98.7 3.2E-09 6.9E-14 93.4 0.5 211 102-354 8-225 (479)
141 KOG4209 Splicing factor RNPS1, 98.7 2.3E-08 4.9E-13 85.6 5.6 80 99-179 99-178 (231)
142 PF11608 Limkain-b1: Limkain b 98.7 1.4E-07 3.1E-12 64.7 8.2 72 276-357 3-79 (90)
143 KOG0116 RasGAP SH3 binding pro 98.7 3.6E-08 7.8E-13 91.0 7.0 77 101-178 288-364 (419)
144 PF11608 Limkain-b1: Limkain b 98.7 1.2E-07 2.5E-12 65.1 7.4 70 102-181 3-77 (90)
145 KOG0106 Alternative splicing f 98.7 2.9E-08 6.2E-13 82.6 5.1 74 276-357 2-75 (216)
146 KOG0151 Predicted splicing reg 98.6 1.1E-07 2.4E-12 90.1 8.6 88 270-357 169-259 (877)
147 KOG2193 IGF-II mRNA-binding pr 98.6 1.2E-08 2.5E-13 90.8 0.6 157 102-357 2-159 (584)
148 KOG1995 Conserved Zn-finger pr 98.6 4.4E-07 9.4E-12 79.9 9.9 86 272-357 63-156 (351)
149 KOG3152 TBP-binding protein, a 98.5 1.4E-07 3E-12 78.8 5.7 74 100-173 73-158 (278)
150 KOG0151 Predicted splicing reg 98.5 2.3E-07 5E-12 88.1 7.6 82 98-179 171-255 (877)
151 KOG4454 RNA binding protein (R 98.5 6.4E-08 1.4E-12 78.7 3.1 78 274-353 8-85 (267)
152 PF08777 RRM_3: RNA binding mo 98.4 1E-06 2.2E-11 65.7 6.3 71 276-352 2-77 (105)
153 KOG4849 mRNA cleavage factor I 98.2 1.9E-06 4.2E-11 75.1 5.8 75 276-350 81-157 (498)
154 KOG1995 Conserved Zn-finger pr 98.2 1.5E-06 3.3E-11 76.6 5.1 83 100-182 65-155 (351)
155 PF08777 RRM_3: RNA binding mo 98.2 3.6E-06 7.9E-11 62.8 5.7 59 102-166 2-60 (105)
156 COG5175 MOT2 Transcriptional r 98.1 6.5E-06 1.4E-10 71.6 6.6 89 101-189 114-212 (480)
157 COG5175 MOT2 Transcriptional r 97.9 4.1E-05 8.8E-10 66.7 7.7 80 274-353 113-201 (480)
158 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.1E-05 8.9E-10 49.2 5.4 53 101-160 1-53 (53)
159 KOG4210 Nuclear localization s 97.8 1E-05 2.2E-10 71.9 3.0 79 102-181 185-264 (285)
160 KOG4849 mRNA cleavage factor I 97.8 2.2E-05 4.7E-10 68.7 4.5 78 102-179 81-160 (498)
161 PF14605 Nup35_RRM_2: Nup53/35 97.8 6E-05 1.3E-09 48.4 5.4 52 276-334 2-53 (53)
162 KOG1855 Predicted RNA-binding 97.8 6.7E-05 1.5E-09 67.7 7.5 82 258-339 214-308 (484)
163 KOG2314 Translation initiation 97.7 4E-05 8.7E-10 71.4 5.0 76 100-176 57-139 (698)
164 KOG3152 TBP-binding protein, a 97.7 2.3E-05 5E-10 65.8 2.9 71 276-346 75-157 (278)
165 KOG2314 Translation initiation 97.7 0.00013 2.9E-09 68.1 8.0 76 276-352 59-141 (698)
166 KOG0115 RNA-binding protein p5 97.7 0.00023 5.1E-09 60.0 8.6 90 155-248 6-95 (275)
167 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00034 7.4E-09 51.3 8.0 78 275-354 6-91 (100)
168 KOG0115 RNA-binding protein p5 97.5 0.00082 1.8E-08 56.8 9.3 105 237-355 6-114 (275)
169 PF08952 DUF1866: Domain of un 97.5 0.00052 1.1E-08 53.4 7.4 57 290-355 51-107 (146)
170 KOG1855 Predicted RNA-binding 97.5 0.00012 2.6E-09 66.1 4.0 68 100-167 230-310 (484)
171 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00066 1.4E-08 49.8 6.7 77 101-179 6-90 (100)
172 PF08952 DUF1866: Domain of un 97.4 0.00071 1.5E-08 52.7 7.1 74 98-180 24-106 (146)
173 KOG0129 Predicted RNA-binding 97.3 0.00087 1.9E-08 62.3 8.2 63 100-162 369-432 (520)
174 KOG1996 mRNA splicing factor [ 97.3 0.00073 1.6E-08 58.0 6.6 65 289-353 300-365 (378)
175 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.6E-09 61.8 1.9 63 290-353 83-146 (260)
176 KOG2416 Acinus (induces apopto 97.2 0.0012 2.6E-08 62.3 8.0 80 271-356 440-523 (718)
177 KOG2416 Acinus (induces apopto 97.2 0.00071 1.5E-08 63.8 5.8 75 100-180 443-521 (718)
178 KOG2202 U2 snRNP splicing fact 97.1 0.00023 5E-09 60.2 1.9 63 116-179 83-146 (260)
179 KOG4676 Splicing factor, argin 96.9 0.002 4.3E-08 57.8 5.6 77 276-353 8-87 (479)
180 PF08675 RNA_bind: RNA binding 96.8 0.009 2E-07 41.5 7.3 55 275-338 9-63 (87)
181 KOG1996 mRNA splicing factor [ 96.8 0.0039 8.4E-08 53.7 6.7 64 115-178 300-364 (378)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0076 1.6E-07 49.8 6.3 79 276-354 8-97 (176)
183 PF15023 DUF4523: Protein of u 96.4 0.022 4.8E-07 43.8 7.6 74 273-354 84-161 (166)
184 PF08675 RNA_bind: RNA binding 96.4 0.02 4.4E-07 39.8 6.7 55 102-165 10-64 (87)
185 KOG2193 IGF-II mRNA-binding pr 96.3 0.0028 6.2E-08 57.3 2.8 77 276-358 2-79 (584)
186 PF10309 DUF2414: Protein of u 96.2 0.026 5.6E-07 37.2 6.3 54 276-337 6-62 (62)
187 KOG2591 c-Mpl binding protein, 96.2 0.027 5.7E-07 53.2 8.6 71 275-352 175-249 (684)
188 PF10309 DUF2414: Protein of u 96.2 0.039 8.5E-07 36.3 7.0 54 102-163 6-62 (62)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0035 7.6E-08 51.7 2.6 71 100-170 6-82 (176)
190 KOG0112 Large RNA-binding prot 96.2 0.007 1.5E-07 60.2 4.8 77 98-180 452-530 (975)
191 KOG2318 Uncharacterized conser 96.0 0.044 9.6E-07 52.1 9.0 72 99-170 172-295 (650)
192 KOG4285 Mitotic phosphoprotein 95.9 0.099 2.1E-06 45.6 10.2 78 275-360 197-275 (350)
193 PF04847 Calcipressin: Calcipr 95.9 0.028 6E-07 46.6 6.8 63 288-356 8-72 (184)
194 PF15023 DUF4523: Protein of u 95.9 0.05 1.1E-06 42.0 7.2 73 99-179 84-160 (166)
195 KOG2068 MOT2 transcription fac 95.8 0.005 1.1E-07 54.6 1.7 83 100-182 76-164 (327)
196 PF07576 BRAP2: BRCA1-associat 95.6 0.17 3.7E-06 38.0 9.2 67 276-344 14-81 (110)
197 PF07576 BRAP2: BRCA1-associat 95.2 0.2 4.3E-06 37.7 8.4 68 101-170 12-81 (110)
198 PF11767 SET_assoc: Histone ly 95.0 0.12 2.6E-06 34.7 6.1 56 285-349 10-65 (66)
199 KOG2068 MOT2 transcription fac 95.0 0.0098 2.1E-07 52.8 1.2 79 276-354 78-162 (327)
200 PF03880 DbpA: DbpA RNA bindin 95.0 0.2 4.3E-06 34.8 7.5 59 285-352 11-74 (74)
201 KOG2135 Proteins containing th 94.9 0.021 4.6E-07 52.8 3.0 76 274-356 371-447 (526)
202 KOG4574 RNA-binding protein (c 94.9 0.032 6.9E-07 55.4 4.3 79 277-361 300-380 (1007)
203 KOG2135 Proteins containing th 94.8 0.021 4.5E-07 52.8 2.6 76 100-182 371-447 (526)
204 PF04847 Calcipressin: Calcipr 94.6 0.093 2E-06 43.5 5.8 60 114-179 8-69 (184)
205 PRK11634 ATP-dependent RNA hel 94.6 0.58 1.3E-05 47.3 12.6 62 285-355 497-563 (629)
206 KOG0804 Cytoplasmic Zn-finger 94.4 0.14 3.1E-06 47.3 6.9 71 98-170 71-142 (493)
207 KOG2253 U1 snRNP complex, subu 94.3 0.048 1E-06 52.8 4.0 73 271-352 36-108 (668)
208 KOG0804 Cytoplasmic Zn-finger 93.9 0.15 3.3E-06 47.1 6.1 68 275-344 74-142 (493)
209 KOG1924 RhoA GTPase effector D 93.3 0.28 6.1E-06 48.7 7.1 13 152-164 208-220 (1102)
210 KOG2591 c-Mpl binding protein, 93.2 0.17 3.7E-06 48.0 5.3 69 101-176 175-247 (684)
211 KOG4285 Mitotic phosphoprotein 92.9 0.39 8.5E-06 42.1 6.7 71 101-179 197-268 (350)
212 KOG2253 U1 snRNP complex, subu 92.7 0.078 1.7E-06 51.4 2.5 70 99-177 38-107 (668)
213 KOG1999 RNA polymerase II tran 92.1 1 2.2E-05 46.1 9.4 28 142-169 209-236 (1024)
214 PF04147 Nop14: Nop14-like fam 91.9 0.17 3.7E-06 52.8 4.0 14 113-126 426-439 (840)
215 PF04931 DNA_pol_phi: DNA poly 91.8 0.073 1.6E-06 55.3 1.3 8 118-125 741-748 (784)
216 KOG4574 RNA-binding protein (c 91.5 0.11 2.4E-06 51.7 2.1 70 104-179 301-372 (1007)
217 PF04931 DNA_pol_phi: DNA poly 91.2 0.088 1.9E-06 54.7 1.2 9 113-121 729-737 (784)
218 KOG2318 Uncharacterized conser 90.6 1.2 2.6E-05 42.8 7.7 79 274-352 173-305 (650)
219 PF11767 SET_assoc: Histone ly 90.3 1.7 3.6E-05 29.2 6.2 55 112-175 11-65 (66)
220 PF03880 DbpA: DbpA RNA bindin 89.7 1.8 3.8E-05 30.0 6.3 58 112-178 12-74 (74)
221 KOG4483 Uncharacterized conser 89.0 0.56 1.2E-05 42.7 4.2 54 101-161 391-445 (528)
222 KOG1924 RhoA GTPase effector D 88.1 1.2 2.5E-05 44.6 5.9 9 407-415 593-601 (1102)
223 KOG4019 Calcineurin-mediated s 87.3 0.74 1.6E-05 37.3 3.4 77 276-358 11-93 (193)
224 PF07292 NID: Nmi/IFP 35 domai 87.2 0.75 1.6E-05 32.9 3.1 57 146-203 1-74 (88)
225 PF07292 NID: Nmi/IFP 35 domai 82.1 2.6 5.5E-05 30.2 3.9 68 228-296 1-73 (88)
226 KOG2891 Surface glycoprotein [ 78.9 1.3 2.8E-05 38.3 1.8 68 101-168 149-247 (445)
227 KOG4019 Calcineurin-mediated s 78.0 2 4.2E-05 35.0 2.5 76 101-182 10-91 (193)
228 PF10567 Nab6_mRNP_bdg: RNA-re 77.8 6 0.00013 34.9 5.5 80 274-353 14-106 (309)
229 PRK06958 single-stranded DNA-b 77.7 13 0.00027 30.9 7.2 15 403-417 159-173 (182)
230 PF04147 Nop14: Nop14-like fam 77.2 1.5 3.3E-05 45.9 2.1 6 345-350 743-748 (840)
231 KOG4410 5-formyltetrahydrofola 75.8 13 0.00028 32.7 6.9 47 275-327 330-377 (396)
232 PF10567 Nab6_mRNP_bdg: RNA-re 74.9 7.4 0.00016 34.4 5.3 61 100-160 14-81 (309)
233 KOG3973 Uncharacterized conser 74.6 4.3 9.4E-05 36.5 3.9 12 396-407 380-391 (465)
234 KOG2141 Protein involved in hi 73.6 1.5 3.2E-05 43.5 0.9 25 320-344 624-648 (822)
235 KOG4365 Uncharacterized conser 71.3 0.69 1.5E-05 42.8 -1.7 78 276-354 4-81 (572)
236 KOG2141 Protein involved in hi 71.3 2.2 4.7E-05 42.4 1.4 9 285-293 554-562 (822)
237 PF03468 XS: XS domain; Inter 71.2 2.9 6.3E-05 31.8 1.9 49 276-327 9-66 (116)
238 PRK07772 single-stranded DNA-b 71.1 17 0.00037 30.3 6.5 17 402-418 153-169 (186)
239 COG4371 Predicted membrane pro 70.9 11 0.00025 32.3 5.4 11 394-404 82-92 (334)
240 KOG4410 5-formyltetrahydrofola 70.1 5.9 0.00013 34.6 3.6 48 101-154 330-378 (396)
241 smart00596 PRE_C2HC PRE_C2HC d 69.7 9.1 0.0002 25.8 3.7 62 116-180 2-64 (69)
242 PF07530 PRE_C2HC: Associated 69.6 11 0.00024 25.5 4.2 63 116-181 2-65 (68)
243 PF14111 DUF4283: Domain of un 68.5 11 0.00023 30.2 4.8 36 276-311 105-141 (153)
244 PF05285 SDA1: SDA1; InterPro 68.3 2.8 6E-05 38.6 1.4 6 114-119 191-196 (324)
245 KOG2038 CAATT-binding transcri 67.2 6.1 0.00013 39.8 3.5 16 105-120 959-974 (988)
246 KOG2295 C2H2 Zn-finger protein 66.7 0.85 1.8E-05 43.5 -2.2 70 101-170 231-300 (648)
247 KOG2891 Surface glycoprotein [ 66.6 4 8.6E-05 35.5 1.9 35 276-310 150-196 (445)
248 PF02714 DUF221: Domain of unk 62.7 14 0.0003 34.1 4.9 56 146-203 1-56 (325)
249 PRK14548 50S ribosomal protein 62.4 37 0.0008 24.1 5.8 57 103-162 22-80 (84)
250 PRK14548 50S ribosomal protein 62.0 35 0.00077 24.2 5.7 57 278-337 23-81 (84)
251 PF03468 XS: XS domain; Inter 61.6 11 0.00023 28.8 3.3 53 103-158 10-71 (116)
252 COG5638 Uncharacterized conser 60.9 79 0.0017 29.5 9.0 37 100-136 145-186 (622)
253 smart00596 PRE_C2HC PRE_C2HC d 60.8 22 0.00048 24.0 4.2 63 290-355 2-65 (69)
254 TIGR03636 L23_arch archaeal ri 60.5 43 0.00093 23.3 5.8 57 277-336 15-73 (77)
255 KOG2295 C2H2 Zn-finger protein 60.3 1.4 3E-05 42.2 -2.0 72 275-346 231-302 (648)
256 KOG2236 Uncharacterized conser 59.6 91 0.002 29.8 9.4 10 198-207 247-256 (483)
257 PF02724 CDC45: CDC45-like pro 59.6 4.8 0.0001 40.7 1.4 13 234-246 400-412 (622)
258 KOG4483 Uncharacterized conser 59.5 21 0.00045 33.0 5.2 55 275-336 391-446 (528)
259 TIGR03636 L23_arch archaeal ri 59.2 49 0.0011 23.1 5.9 57 103-162 15-73 (77)
260 KOG1295 Nonsense-mediated deca 58.3 12 0.00025 34.6 3.4 68 101-168 7-77 (376)
261 KOG4213 RNA-binding protein La 58.0 14 0.0003 30.1 3.4 57 102-162 112-169 (205)
262 PF07530 PRE_C2HC: Associated 57.1 34 0.00074 23.2 4.8 63 290-355 2-65 (68)
263 PF02724 CDC45: CDC45-like pro 55.9 7.2 0.00016 39.4 2.0 14 233-246 396-409 (622)
264 KOG0262 RNA polymerase I, larg 54.4 28 0.00061 37.4 5.7 21 104-124 1444-1464(1640)
265 KOG1295 Nonsense-mediated deca 53.2 18 0.00039 33.4 3.8 67 276-342 8-77 (376)
266 KOG4008 rRNA processing protei 52.6 12 0.00026 31.9 2.4 36 98-133 37-72 (261)
267 KOG0020 Endoplasmic reticulum 51.9 74 0.0016 30.7 7.5 22 103-125 338-359 (785)
268 COG4907 Predicted membrane pro 47.5 41 0.0009 31.9 5.2 21 289-309 488-513 (595)
269 PTZ00415 transmission-blocking 45.4 8.4 0.00018 42.5 0.6 8 128-135 286-293 (2849)
270 PF02714 DUF221: Domain of unk 45.4 25 0.00054 32.4 3.6 36 320-357 1-36 (325)
271 PF15513 DUF4651: Domain of un 44.5 55 0.0012 21.6 4.0 19 290-308 9-27 (62)
272 COG5193 LHP1 La protein, small 44.4 10 0.00022 35.1 0.8 61 101-161 174-244 (438)
273 COG4371 Predicted membrane pro 43.3 53 0.0012 28.4 4.8 6 339-344 50-55 (334)
274 KOG4213 RNA-binding protein La 43.2 35 0.00077 27.9 3.6 57 276-336 112-169 (205)
275 KOG3875 Peroxisomal biogenesis 42.8 38 0.00083 30.4 4.0 11 399-409 92-102 (362)
276 TIGR02542 B_forsyth_147 Bacter 42.6 1E+02 0.0022 23.1 5.6 105 109-234 11-128 (145)
277 TIGR00927 2A1904 K+-dependent 42.3 11 0.00025 39.3 0.9 10 102-111 905-914 (1096)
278 KOG4365 Uncharacterized conser 41.6 4.9 0.00011 37.4 -1.6 78 101-179 3-80 (572)
279 COG5638 Uncharacterized conser 41.5 88 0.0019 29.2 6.2 80 273-352 144-295 (622)
280 COG4547 CobT Cobalamin biosynt 40.3 18 0.00038 34.3 1.7 11 167-177 425-435 (620)
281 TIGR00927 2A1904 K+-dependent 38.6 16 0.00034 38.3 1.2 10 143-152 931-940 (1096)
282 KOG0262 RNA polymerase I, larg 37.5 34 0.00073 36.9 3.3 9 292-300 1542-1550(1640)
283 KOG4264 Nucleo-cytoplasmic pro 36.8 28 0.00061 33.5 2.5 15 146-160 212-226 (694)
284 PF11823 DUF3343: Protein of u 36.7 56 0.0012 22.3 3.5 27 318-344 2-28 (73)
285 COG5193 LHP1 La protein, small 36.3 18 0.00038 33.6 1.1 60 276-335 175-244 (438)
286 KOG4008 rRNA processing protei 35.4 31 0.00067 29.6 2.3 32 275-306 40-71 (261)
287 PF11823 DUF3343: Protein of u 34.3 1.5E+02 0.0033 20.1 6.1 62 144-207 2-64 (73)
288 PRK11901 hypothetical protein; 33.9 1.5E+02 0.0033 27.0 6.5 66 96-166 240-307 (327)
289 PF03439 Spt5-NGN: Early trans 30.2 1.1E+02 0.0023 21.7 4.1 34 301-339 33-66 (84)
290 KOG2147 Nucleolar protein invo 29.9 67 0.0015 32.6 3.9 14 113-126 396-409 (823)
291 PF03439 Spt5-NGN: Early trans 29.7 99 0.0021 21.9 3.9 35 127-166 33-67 (84)
292 KOG2773 Apoptosis antagonizing 29.4 27 0.00058 33.1 1.1 8 344-351 446-453 (483)
293 PF04026 SpoVG: SpoVG; InterP 28.3 1E+02 0.0022 21.9 3.7 26 127-152 2-27 (84)
294 PF07423 DUF1510: Protein of u 28.3 61 0.0013 27.8 3.0 11 113-123 150-160 (217)
295 PRK12280 rplW 50S ribosomal pr 27.1 2.1E+02 0.0045 23.2 5.6 34 103-136 23-58 (158)
296 CHL00030 rpl23 ribosomal prote 27.1 2.3E+02 0.0051 20.6 5.4 34 103-136 20-55 (93)
297 PF14026 DUF4242: Protein of u 27.0 2.2E+02 0.0048 19.8 7.6 62 277-341 2-70 (77)
298 PF07423 DUF1510: Protein of u 26.9 55 0.0012 28.1 2.5 12 154-165 153-164 (217)
299 KOG4264 Nucleo-cytoplasmic pro 26.6 28 0.0006 33.5 0.7 9 319-327 443-451 (694)
300 KOG0772 Uncharacterized conser 25.8 31 0.00068 33.2 0.9 97 17-113 87-191 (641)
301 PF08206 OB_RNB: Ribonuclease 25.7 26 0.00057 22.7 0.3 36 317-353 8-44 (58)
302 PF05470 eIF-3c_N: Eukaryotic 25.6 48 0.001 33.4 2.2 12 326-337 515-526 (595)
303 PF00276 Ribosomal_L23: Riboso 25.5 95 0.0021 22.4 3.2 34 103-136 21-56 (91)
304 PTZ00191 60S ribosomal protein 25.4 2.6E+02 0.0057 22.2 5.7 55 278-335 84-140 (145)
305 PF07469 DUF1518: Domain of un 25.1 1.1E+02 0.0023 19.9 2.9 7 379-385 23-29 (58)
306 KOG2187 tRNA uracil-5-methyltr 24.5 83 0.0018 30.7 3.4 41 318-358 64-104 (534)
307 KOG0156 Cytochrome P450 CYP2 s 24.0 1.5E+02 0.0033 29.1 5.3 62 102-173 33-97 (489)
308 COG4907 Predicted membrane pro 23.8 77 0.0017 30.2 3.0 7 330-336 528-534 (595)
309 KOG1308 Hsp70-interacting prot 23.8 1.7E+02 0.0036 27.1 5.0 16 288-303 217-232 (377)
310 COG4547 CobT Cobalamin biosynt 23.3 61 0.0013 30.9 2.2 8 103-110 318-325 (620)
311 PRK13259 regulatory protein Sp 23.3 1.3E+02 0.0029 21.8 3.5 26 127-152 2-27 (94)
312 PRK11901 hypothetical protein; 22.7 1.4E+02 0.003 27.3 4.2 59 276-339 246-306 (327)
313 PF03896 TRAP_alpha: Transloco 21.2 38 0.00082 30.5 0.5 8 101-108 84-91 (285)
314 KOG2044 5'-3' exonuclease HKE1 20.8 2.9E+02 0.0063 28.7 6.3 15 227-241 633-647 (931)
315 PF00403 HMA: Heavy-metal-asso 20.5 2.5E+02 0.0053 18.0 6.7 54 277-336 1-58 (62)
316 KOG1999 RNA polymerase II tran 20.4 60 0.0013 34.0 1.7 16 283-298 447-462 (1024)
317 PF15407 Spo7_2_N: Sporulation 20.0 67 0.0015 21.7 1.4 18 100-117 26-43 (67)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.8e-53 Score=367.80 Aligned_cols=258 Identities=42% Similarity=0.683 Sum_probs=245.0
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc-CCeEEE
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF-KGKKIR 174 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~-~g~~i~ 174 (418)
..|+.++.|||+.||.++.+++|.-+|++.|+|..++|++++.+|.+||||||+|.+++.|+.|++.||+..| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999998 699999
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCC
Q 014815 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (418)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (418)
|..+..+++|||+|+|+.+++++|.+.+.+.++.|..+.+...+....+++|||||+|.++..|..|.+.|-...+.+.+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCC-CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q 014815 255 NAPTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 333 (418)
+.+.|+|+.+..... ......+.|||+||+.++|++.|+.+|++||.|.+|+.++| ||||+|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 999999999988766 34456789999999999999999999999999999998864 999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCCCCCCCC
Q 014815 334 LKNTEKYELDGQALECSLAKPQADQKSA 361 (418)
Q Consensus 334 ~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 361 (418)
++.+||+.|+|..|.|.+|+|....+..
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999999998776544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.3e-47 Score=358.07 Aligned_cols=256 Identities=20% Similarity=0.379 Sum_probs=228.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+.++|||+|||+++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|+|..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 014815 180 A------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (418)
Q Consensus 180 ~------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (418)
+ ..+|||+|||..+++++|+.+|..+|. |..+.++.+ ..++.++|||||+|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3 357999999999999999999999999 889998887 55778999999999999999999999999866655
Q ss_pred CCCceeccCCCCCCCC----------------------------------------------------------------
Q 014815 254 TNAPTVSWADPRNVDS---------------------------------------------------------------- 269 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 269 (418)
...+.+.|+.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 5666666654322000
Q ss_pred ------------------------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeC
Q 014815 270 ------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (418)
Q Consensus 270 ------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~ 325 (418)
.....+.+|||+|||+.+++++|+++|++||.|.+|+|+++..++.+||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00111236999999999999999999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 326 ERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 326 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
+.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999988754
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.4e-46 Score=353.49 Aligned_cols=252 Identities=35% Similarity=0.602 Sum_probs=226.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC-CeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~ 176 (418)
|...++|||+|||+++++++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|.+||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 78999999999999999999999999999885 8999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (418)
.+...++|||+|||..++.++|.+.|..++..+..+.+........++++||||+|.++.+|..|+..+....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999865666655544455678899999999999999999999987777888999
Q ss_pred ceeccCCCCCCCCC-CCccccEEEEcCCCCCCCHHHHHHHHhcc--ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q 014815 257 PTVSWADPRNVDSS-GASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (418)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 333 (418)
+.|.|+.+...... .....++|||+||+.++++++|+++|+.| |.|.+|.+++ +||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 99999987654432 23445889999999999999999999999 9999998753 6999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCCCCC
Q 014815 334 LKNTEKYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 334 ~~~l~g~~i~g~~l~v~~a~~~~~~ 358 (418)
++.||+..|.|+.|+|.|+++....
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999886543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.8e-43 Score=346.42 Aligned_cols=253 Identities=27% Similarity=0.452 Sum_probs=221.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+|++.+++..|.|+.|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999765310
Q ss_pred --------------------------------------------------------------------------------
Q 014815 182 -------------------------------------------------------------------------------- 181 (418)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (418)
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence
Q ss_pred ------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHH
Q 014815 182 ------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (418)
Q Consensus 182 ------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (418)
.+|||+|||.++++++|+.+|+.||. |..+.++.+ ..+.++|||||.|.+.++|.+|+.
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHH
Confidence 13788889999999999999999998 888888877 467889999999999999999999
Q ss_pred HhcCCCCCCC--CCCceeccCCCCCCCC--------------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEe
Q 014815 244 KMTNPNFKLG--TNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307 (418)
Q Consensus 244 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 307 (418)
.+++..+... +..+.+.++..+.... .......+|||+||+..+|+++|+++|+.||.|.+|+|
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i 317 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV 317 (562)
T ss_pred HhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE
Confidence 9998765422 6677777765554331 11334578999999999999999999999999999999
Q ss_pred ccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014815 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 308 ~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 358 (418)
+.+ .++.++|||||+|.+.++|.+|+..|||..|.|++|.|.+|.++..+
T Consensus 318 ~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 318 MLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999 45666899999999999999999999999999999999999876543
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.8e-43 Score=284.73 Aligned_cols=254 Identities=22% Similarity=0.393 Sum_probs=230.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..+.|.|.=||..+|+++|+.+|...|+|++|++++|+.+|++.||+||.|.++++|.+|+..|||..+..++|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 014815 180 AK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (418)
Q Consensus 180 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (418)
+. ..|||++||+.++..+|..+|++||. |...++..+ ..++.++|.+||.|..+..|..|+..+++......
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 75 57999999999999999999999999 777777777 67899999999999999999999999999877777
Q ss_pred CCCceeccCCCCCCCC-----------------------------------------------------------CCCcc
Q 014815 254 TNAPTVSWADPRNVDS-----------------------------------------------------------SGASQ 274 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 274 (418)
..++.|.++....... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 7777777765432111 01112
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
..+|||.||.+++++.-|+++|.+||.|..|+|++|-.+..+||||||.+.+.++|..||..|||..+.+|.|.|.|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 014815 355 Q 355 (418)
Q Consensus 355 ~ 355 (418)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 5
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-40 Score=269.40 Aligned_cols=225 Identities=22% Similarity=0.439 Sum_probs=192.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHH-HhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-KLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~-~l~~~~~~g~~i~v~~~ 178 (418)
..+||||+||..++|++-|..+|++.|.|..++|+.+.- + ...|.. ....+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p~nQsk~t~--------- 59 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAPGNQSKPTS--------- 59 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCcccCCCCcc---------
Confidence 458999999999999999999999999999999988610 0 000000 00000011
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
.....+||+.|...++.+.|++.|.+||. |..+++++| ..+++++||+||.|-+..+|+.|+..|++. .++++.++
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 11345789999999999999999999999 999999999 889999999999999999999999999997 77899999
Q ss_pred eccCCCCCCCC------------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCC
Q 014815 259 VSWADPRNVDS------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE 326 (418)
Q Consensus 259 ~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~ 326 (418)
..|+..+.... ......++|||+||+..+|++.|++.|++||.|..|+|.+++ ||+||.|.+
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~t 209 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFET 209 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecc
Confidence 99999887433 234457999999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 327 RSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 327 ~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
.|+|.+||..+|+..|.|+.|+|.|.+......
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999999998765543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.1e-38 Score=306.42 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=205.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh--CCCccCCeEEEecc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCST 177 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~i~v~~ 177 (418)
++++|||+|||+++|+++|+++|++||.|.+|.++++ ++||||+|.+.++|.+|+..+ ++..|.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 689999999999999999864 77889999999988
Q ss_pred cccc------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 178 SQAK------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 178 ~~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
+..+ ..|+|.||+..++++.|.++|+.||. |..+.++++ ..+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~-----~~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTK-----NNVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEec-----CCceEEEEEECCHHHHH
Confidence 6421 25899999999999999999999999 999988765 12468999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCCCCCC---------------------------------------------------
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------------------------------------- 268 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 268 (418)
+|+..|++..+..+.+.+.+.|+.+....
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999999887655555555544321100
Q ss_pred ----------------------------------------CCCCccccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEe
Q 014815 269 ----------------------------------------SSGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVV 307 (418)
Q Consensus 269 ----------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i 307 (418)
.....++++|||+|||+ .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012457999999998 6999999999999999999999
Q ss_pred ccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014815 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 308 ~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
++++ +|||||+|.+.++|..||..|||..|.|++|+|.+++...
T Consensus 309 ~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9874 6999999999999999999999999999999999987654
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.2e-38 Score=283.09 Aligned_cols=250 Identities=25% Similarity=0.495 Sum_probs=223.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
+.||||++||++++.++|.++|+.+|+|..+.++.+..++.++||+||+|.-.+++++|+..+++..+.||.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred c--------------------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEE
Q 014815 181 K--------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228 (418)
Q Consensus 181 ~--------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 228 (418)
+ -.|.|+|||+.+...+|..+|+.||. |..+.|.+. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 36899999999999999999999999 999998865 444445999
Q ss_pred EEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCC-------------------------------------
Q 014815 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSG------------------------------------- 271 (418)
Q Consensus 229 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 271 (418)
||.|....+|..|+..+|+. .+.++++.|+|+.++..-...
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999986 678999999999665321100
Q ss_pred -------------------------------------------------CccccEEEEcCCCCCCCHHHHHHHHhccccE
Q 014815 272 -------------------------------------------------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (418)
Q Consensus 272 -------------------------------------------------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 302 (418)
..-..+|||+|||+++|++.|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0003789999999999999999999999999
Q ss_pred EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC-----C-ceeCCeEEEEEeccCC
Q 014815 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-----K-YELDGQALECSLAKPQ 355 (418)
Q Consensus 303 ~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~-----g-~~i~g~~l~v~~a~~~ 355 (418)
.++.|+.++.++.++|.|||.|.+..+|+.||.+.. | ..|.||.|.|.+|-.+
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999999999999999999862 4 7789999999998653
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8.8e-37 Score=294.73 Aligned_cols=249 Identities=23% Similarity=0.411 Sum_probs=214.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .|+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 4999999999999976
Q ss_pred ccc------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 178 SQA------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 178 ~~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
+.. ..+|||+|||..+++++|..+|+.||. |..+.++.+ ..++.++|||||+|.+.+.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 532 257999999999999999999999999 999999988 566789999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCCCCC----------------------------------------------------
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADPRNV---------------------------------------------------- 267 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 267 (418)
.|+..|++ +.+.++.+.|.|+.....
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 456778888887431100
Q ss_pred ---------------C------------------C-CCCccccEEEEcCCCCCCC----------HHHHHHHHhccccEE
Q 014815 268 ---------------D------------------S-SGASQVKAVYVKNLPRNVT----------QDQLKKLFEHHGRIT 303 (418)
Q Consensus 268 ---------------~------------------~-~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~ 303 (418)
+ . .....+++|+|.||....+ .++|++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0 0113467899999954443 368999999999999
Q ss_pred EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 304 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
.|.|.... +.|++||+|.++++|.+|++.|||..|+|+.|.|.|....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99997432 3599999999999999999999999999999999998654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.9e-37 Score=276.80 Aligned_cols=174 Identities=26% Similarity=0.463 Sum_probs=156.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|+.||.|.+|+|+++..+++++|||||+|.+.++|.+|++.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCc
Q 014815 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (418)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (418)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 642100
Q ss_pred eeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh
Q 014815 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 337 (418)
....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 001157999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCceeCC--eEEEEEeccCCCCCC
Q 014815 338 EKYELDG--QALECSLAKPQADQK 359 (418)
Q Consensus 338 ~g~~i~g--~~l~v~~a~~~~~~~ 359 (418)
|+..|.+ ++|+|.++.......
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccCCCceeEEEEECCcccccc
Confidence 9998876 799999998765443
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.2e-38 Score=273.70 Aligned_cols=255 Identities=20% Similarity=0.413 Sum_probs=226.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc-cC--CeEEEec
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FK--GKKIRCS 176 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~-~~--g~~i~v~ 176 (418)
+.-+|||+-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |. ..+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34679999999999999999999999999999999999999999999999999999999999999865 43 4688898
Q ss_pred cccc-------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCC
Q 014815 177 TSQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (418)
Q Consensus 177 ~~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (418)
++.. .+.|||+-|++.+++.+++++|++||. |.+|.++++ ..+.+||++||.|.+++.|..|++.||+..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8864 467899999999999999999999999 999999998 789999999999999999999999999874
Q ss_pred C-CCCCCCceeccCCCCCCCCCCCc------------------c------------------------------------
Q 014815 250 F-KLGTNAPTVSWADPRNVDSSGAS------------------Q------------------------------------ 274 (418)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------------ 274 (418)
. .....++.|.|++++........ +
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 3 33455677777766533220000 0
Q ss_pred --------------------------------------------------------------------------------
Q 014815 275 -------------------------------------------------------------------------------- 274 (418)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (418)
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccEEEE
Q 014815 275 --------------------------------------------------------------------------VKAVYV 280 (418)
Q Consensus 275 --------------------------------------------------------------------------~~~l~V 280 (418)
...|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 577999
Q ss_pred cCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 281 ~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
.+||.+.-+.+|...|..||.|.+.++..++.++.+++|+||.|++..+|..||..|||+.|++++|+|.+.+.+..
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887643
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.3e-35 Score=278.19 Aligned_cols=159 Identities=21% Similarity=0.424 Sum_probs=143.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++++++|+++|.+||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cc-----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHH
Q 014815 179 QA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYS 241 (418)
Q Consensus 179 ~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 241 (418)
.. .++|||+||++.+++++|+.+|+.||. |..+++.++ ..++.++|||||+|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 31 257999999999999999999999999 999999998 56788999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceecc
Q 014815 242 RQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~ 261 (418)
+..||+. .++++.++|.+
T Consensus 263 I~amNg~--elgGr~LrV~k 280 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGK 280 (612)
T ss_pred HHHhCCC--eeCCeEEEEEe
Confidence 9999964 33444444433
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.7e-35 Score=288.36 Aligned_cols=245 Identities=24% Similarity=0.438 Sum_probs=202.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc------------CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI------------GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
..++|||+|||+.+|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..|| .|+|..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 46899999999999999999999975 34455544 345899999999999999999 699999
Q ss_pred cCCeEEEecccc-----------------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEE
Q 014815 168 FKGKKIRCSTSQ-----------------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGV 212 (418)
Q Consensus 168 ~~g~~i~v~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~ 212 (418)
|.|+.|+|.... ...+|||+|||..+++++|.++|..||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999996321 1257999999999999999999999999 9999
Q ss_pred EEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCC-----------------------
Q 014815 213 ELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS----------------------- 269 (418)
Q Consensus 213 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 269 (418)
.++.+ ..++.++|||||+|.+...|..|+..|++.. +.++.+.|.++.......
T Consensus 326 ~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~--~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKD--TGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCE--ECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99888 6688999999999999999999999999864 567777777764321110
Q ss_pred -CCCccccEEEEcCCCCCC----------CHHHHHHHHhccccEEEEEeccCC---CCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 270 -SGASQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 270 -~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
....++.+|+|.||...- ..++|+++|++||.|..|.|++.. ....+.|+|||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 012356889999996421 236899999999999999998753 223446899999999999999999
Q ss_pred HhCCceeCCeEEEEEeccCC
Q 014815 336 NTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 336 ~l~g~~i~g~~l~v~~a~~~ 355 (418)
.|||..|+|+.|.|.|....
T Consensus 483 ~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HcCCCEECCeEEEEEEeCHH
Confidence 99999999999999998653
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-35 Score=281.02 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=201.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC--eEEEeccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~ 178 (418)
-.+|||+||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999987642 4689999999999999999999999854 45555442
Q ss_pred c-------------------------------------------------------------------------------
Q 014815 179 Q------------------------------------------------------------------------------- 179 (418)
Q Consensus 179 ~------------------------------------------------------------------------------- 179 (418)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------ccccccccCCCC-CCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHH
Q 014815 180 ----------------------AKYRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (418)
Q Consensus 180 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (418)
+...|||+||++ .+++++|.++|+.||. |..++++.+ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 113689999998 6999999999999999 999999876 3699999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeccCCCCCCCC---------------------------------CCCccccEEEEcCC
Q 014815 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNL 283 (418)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 283 (418)
+|..|+..|++. .+.++.+.|.++....... ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999986 4467888887664321100 00134679999999
Q ss_pred CCCCCHHHHHHHHhcccc--EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE------EEEEeccCC
Q 014815 284 PRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA------LECSLAKPQ 355 (418)
Q Consensus 284 p~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~------l~v~~a~~~ 355 (418)
|..+++++|+++|+.||. |..|++.....+ ++++|||+|.+.++|.+||..||+..|.++. |+|.|+++.
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 888988765533 3689999999999999999999999999984 999999864
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-31 Score=242.44 Aligned_cols=241 Identities=27% Similarity=0.428 Sum_probs=216.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
..|||+ +++|+..|.++|+.+|+|.+|+++++. | +.|||||.|.++.+|.+||+++|...+.|++|+|.|++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 999999999999999999999999998 6 9999999999999999999999999999999999999754
Q ss_pred -ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceec
Q 014815 182 -YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (418)
Q Consensus 182 -~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (418)
..+||.||++.++...|.++|+.||. |.+|++..+ ..+ ++|| ||+|.+...|.+|+..+++. .+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 34899999999999999999999999 999999998 333 9999 99999999999999999996 5567777777
Q ss_pred cCCCCCCCCC----CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 261 WADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
....+..... ....-+.++|.|++.+++...|..+|..||.|.++.++.+..+. +++|+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 6665544321 23345789999999999999999999999999999999998887 589999999999999999999
Q ss_pred hCCceeCCeEEEEEeccCCC
Q 014815 337 TEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 337 l~g~~i~g~~l~v~~a~~~~ 356 (418)
||+..+.+..+.|..+..+.
T Consensus 228 l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred ccCCcCCccceeecccccch
Confidence 99999999999999887633
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.1e-31 Score=240.87 Aligned_cols=249 Identities=26% Similarity=0.454 Sum_probs=217.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc-
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA- 180 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~- 180 (418)
+.|||.||+++++...|.++|+.||.|.+|++..+.. | ++|| ||+|.+.+.|.+|++.+||..+.|+.|.|.....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 4499999999999999999999999999999999865 5 9999 9999999999999999999999999999965543
Q ss_pred -------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcC
Q 014815 181 -------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (418)
Q Consensus 181 -------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (418)
...+++.+++...+...|..+|..+|. |..+.++.+ ..+.+++|+||.|.+.++|..|+..+++
T Consensus 154 ~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 154 EEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccC
Confidence 246899999999999999999999999 999999988 6667999999999999999999999999
Q ss_pred CCCCCCCCCceeccCCCCCCC--------------CCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCC
Q 014815 248 PNFKLGTNAPTVSWADPRNVD--------------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~ 313 (418)
..+. +..+.|..+..+... .........|||.||+..++.+.|+.+|+.||.|.+++|..+..+
T Consensus 231 ~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g 308 (369)
T KOG0123|consen 231 KIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENG 308 (369)
T ss_pred CcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCC
Confidence 7554 455555555442111 122345688999999999999999999999999999999998776
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 314 ~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
.. +||+||.|.+.++|.+|+..+|+..+.++.|.|.++.....+.
T Consensus 309 ~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 309 KS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred Cc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 66 8999999999999999999999999999999999998655543
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.6e-29 Score=213.75 Aligned_cols=247 Identities=20% Similarity=0.394 Sum_probs=206.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc-
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA- 180 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~- 180 (418)
++|||+.|.+.+.++.||..|..||+|.+|.+--|+.|++++|||||+|.-+|.|..|++.|||..+.||.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred ----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHH
Q 014815 181 ----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQK 244 (418)
Q Consensus 181 ----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 244 (418)
..++||..+.++.++.+|+..|+.||+ |..|.+.+. ...+.++||+|++|.+..+...|+..
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhhh
Confidence 268999999999999999999999999 999999999 67788999999999999999999999
Q ss_pred hcCCCCCCCCCCceeccCCCCCCCC------C------------------------------------------------
Q 014815 245 MTNPNFKLGTNAPTVSWADPRNVDS------S------------------------------------------------ 270 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------------------------------------ 270 (418)
||- |.+++..++|.......... +
T Consensus 272 MNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 272 MNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred cch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 883 34444444443321110000 0
Q ss_pred -----------------------C--------------------------------------------------------
Q 014815 271 -----------------------G-------------------------------------------------------- 271 (418)
Q Consensus 271 -----------------------~-------------------------------------------------------- 271 (418)
.
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence 0
Q ss_pred -------------CccccEEEEcCC--CCCCC---HHHHHHHHhccccEEEEEeccCCCCCCc----CcEEEEEeCCHHH
Q 014815 272 -------------ASQVKAVYVKNL--PRNVT---QDQLKKLFEHHGRITKVVVPPAKPGQEK----NRIGFVHFAERSS 329 (418)
Q Consensus 272 -------------~~~~~~l~V~nL--p~~~t---~~~L~~~F~~~G~v~~v~i~~~~~~~~~----~g~afV~F~~~~~ 329 (418)
...++.|.++|+ |.+++ +.+|++-|.+||.|.+|.|...+.+..- ----||+|+...+
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e 509 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASE 509 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhH
Confidence 000677888998 55554 4678999999999999999887766421 0246999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEec
Q 014815 330 AMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 330 A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
+.+|+.+|+|+.|.||++....-
T Consensus 510 ~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 510 THRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHHhhccceecCceeehhhh
Confidence 99999999999999999987654
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.6e-29 Score=225.16 Aligned_cols=235 Identities=25% Similarity=0.383 Sum_probs=194.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+..+|.|+||||.+...+|+.+|+.||.|..|.|++.+.++.+ |||||+|....+|..|++.+|+..|.||+|-|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999987765554 999999999999999999999999999999999874
Q ss_pred cc------------------------------------------------------------------------------
Q 014815 180 AK------------------------------------------------------------------------------ 181 (418)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (418)
++
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 32
Q ss_pred ------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHH
Q 014815 182 ------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (418)
Q Consensus 182 ------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (418)
.+|||+|||++++++.|.+.|+.||+ |..+.++.+ ..++.+.|.|||.|.+...+..|+.
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHH
Confidence 47999999999999999999999999 999999999 8999999999999999999999998
Q ss_pred Hhc----CCCCCCCCCCceeccCCCCCCCC--------------------------------------------------
Q 014815 244 KMT----NPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (418)
Q Consensus 244 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (418)
... ...+.+.++.+.+..+..+....
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 873 22367788888887775542111
Q ss_pred -------CCCccccEEEEcCCCCCCCHHHHHHHHhc----c-ccE-EEEEeccCC---CCCCcCcEEEEEeCCHHHHHHH
Q 014815 270 -------SGASQVKAVYVKNLPRNVTQDQLKKLFEH----H-GRI-TKVVVPPAK---PGQEKNRIGFVHFAERSSAMKA 333 (418)
Q Consensus 270 -------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~----~-G~v-~~v~i~~~~---~~~~~~g~afV~F~~~~~A~~A 333 (418)
.-....++|.|+|||..++...|..+... | +.+ ..|+.+... ..+.+.||+|+.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 00112578999999999999999888754 2 222 234443332 2345679999999999999999
Q ss_pred HHHh
Q 014815 334 LKNT 337 (418)
Q Consensus 334 ~~~l 337 (418)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 8854
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=7.7e-28 Score=229.45 Aligned_cols=173 Identities=21% Similarity=0.446 Sum_probs=152.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceec
Q 014815 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (418)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (418)
.++|||+|||+.+++++|+.+|..||+ |..+.++.+ ..+++++|||||+|.+.+.|..|+..|++. .+.++.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 367999999999999999999999999 999999998 678899999999999999999999999885 5668888887
Q ss_pred cCCCCCCCC-------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q 014815 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (418)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A 333 (418)
+........ ......++|||+|||+++++++|+++|+.||.|.+|+|.++..++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 644322111 1122357999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCCCC
Q 014815 334 LKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 334 ~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
|..||++.|+|+.|+|.++.++..
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCcc
Confidence 999999999999999999986543
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=221.38 Aligned_cols=249 Identities=22% Similarity=0.339 Sum_probs=206.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..+.|+|+|||..+..++|..+|..||.|..|.+... | -.++|.|.++.+|.+|+..|....+...++.+.++.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 3478999999999999999999999999999955421 1 249999999999999999999877766666554432
Q ss_pred c--------------------------------------------------------cccccccCCCCCCCHHHHHHHHH
Q 014815 180 A--------------------------------------------------------KYRLFIGNIPRNWGSEDLQKVVS 203 (418)
Q Consensus 180 ~--------------------------------------------------------~~~l~v~~l~~~~~~~~l~~~f~ 203 (418)
. ...||+.||.+..+.+.+...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 0 02399999999999999999999
Q ss_pred hhCCCeeEEEEeccCCC--CCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCC-----CCCCcccc
Q 014815 204 EVGPGVTGVELVKDMKN--SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----SSGASQVK 276 (418)
Q Consensus 204 ~~g~~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 276 (418)
..|. |.++.|.....+ ...+.|||||+|.+..+|..|++.|++. .+.++.+.+.++...... .......+
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCccccccccccccccccc
Confidence 9998 888877665322 4457799999999999999999999976 667888888777622111 12223357
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
.|.|+|||+..+..+|+.+|..||.|.+|+|+........||||||+|-++.+|.+|+.+|..+.+.||+|.+.||....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999999999999885556668999999999999999999999999999999999998654
Q ss_pred C
Q 014815 357 D 357 (418)
Q Consensus 357 ~ 357 (418)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 3
No 21
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=200.81 Aligned_cols=145 Identities=30% Similarity=0.510 Sum_probs=128.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-hccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFC-QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..+.+||.|||+++.+.+|+++| ++.|+|..|.++.|. .|+++|||.|+|+++|.+++|++.||...+.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34669999999999999999999 568999999999985 5999999999999999999999999999999999999654
Q ss_pred ccc-----------------------------------------------------------------------------
Q 014815 179 QAK----------------------------------------------------------------------------- 181 (418)
Q Consensus 179 ~~~----------------------------------------------------------------------------- 181 (418)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 320
Q ss_pred --------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcC
Q 014815 182 --------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (418)
Q Consensus 182 --------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (418)
..+||.||...+....|++.|.-.|. +..+.+-.+ ..+.++|++.++|.++-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 35789999999999999999999998 999888777 5568899999999999999999988874
Q ss_pred C
Q 014815 248 P 248 (418)
Q Consensus 248 ~ 248 (418)
.
T Consensus 279 ~ 279 (608)
T KOG4212|consen 279 Q 279 (608)
T ss_pred C
Confidence 3
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=184.61 Aligned_cols=173 Identities=21% Similarity=0.330 Sum_probs=154.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
...||||+||+..+|++-|.++|-+.|+|..++|.+++.+...+|||||+|.+.++|.-|++-||...|-||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35799999999999999999999999999999999999999999999999999999999999999889999999997654
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
....
T Consensus 88 ~~~~---------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 88 AHQK---------------------------------------------------------------------------- 91 (203)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
....+.+|||+||.+.+++..|.+.|+.||.|.. -.|+++..++.++|||||.|.+.+.+.+|+..||
T Consensus 92 -----------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 92 -----------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred -----------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 0001158999999999999999999999998765 5788999999999999999999999999999999
Q ss_pred CceeCCeEEEEEeccCCCCCC
Q 014815 339 KYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 339 g~~i~g~~l~v~~a~~~~~~~ 359 (418)
|..++.++++|.++..+....
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999998765543
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=2.8e-27 Score=214.16 Aligned_cols=246 Identities=22% Similarity=0.379 Sum_probs=208.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..+|||+--|+..++..+|.+||+.+|.|..|+|+.++.+++++|.|||+|.+.++...|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4578999999999999999999999999999999999999999999999999999999999 799999999999997654
Q ss_pred cc--------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 180 AK--------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 180 ~~--------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
.. ..|+|+||.+++++.+|+.+|++||. |..+.+..+ ..++.++||+||+|.+.++|.
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHHH
Confidence 21 23899999999999999999999999 999999998 669999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCCCCCCC--------------------------------------------------
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (418)
+|+..||+ |.+.|+.+.|.....+....
T Consensus 335 ~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 335 KALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999998 77777776664332110000
Q ss_pred ------------------CCC-------ccccEEEEcCC--CCCCC--------HHHHHHHHhccccEEEEEeccCCCCC
Q 014815 270 ------------------SGA-------SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPGQ 314 (418)
Q Consensus 270 ------------------~~~-------~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~~ 314 (418)
... .++.|+.+.|+ |...| .++|.+-|.+||.|..|.|-+..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns--- 489 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS--- 489 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC---
Confidence 001 23556777777 22222 37889999999999999996654
Q ss_pred CcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 315 EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 315 ~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
-|+.||.|.+.+.|..|+.+|||..|.|+.|.+.|-.-.
T Consensus 490 --~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 490 --AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred --CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 489999999999999999999999999999999987543
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=207.08 Aligned_cols=174 Identities=24% Similarity=0.452 Sum_probs=153.8
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCC-CCCCCCCCceec
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP-NFKLGTNAPTVS 260 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~-~~~~~~~~~~~~ 260 (418)
-.|||+.+|+.|++.+|+.+|++||. |..|.+++| +.++.++|+|||.|.++.+|.+|+.++++. .+......+.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 46999999999999999999999999 999999999 889999999999999999999999999876 445567788888
Q ss_pred cCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc
Q 014815 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 340 (418)
+++...... ...++|||+-|+..+|+.+|+++|++||.|.+|+|+++..+.+ ||||||+|.+.+.|..||+.|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 887665442 2347899999999999999999999999999999999987766 899999999999999999999984
Q ss_pred -eeCC--eEEEEEeccCCCCCCCC
Q 014815 341 -ELDG--QALECSLAKPQADQKSA 361 (418)
Q Consensus 341 -~i~g--~~l~v~~a~~~~~~~~~ 361 (418)
++.| .+|.|+||.++..+...
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred eeeccCCCceEEEecccCCCchHH
Confidence 4555 78999999988776543
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7e-27 Score=192.79 Aligned_cols=153 Identities=25% Similarity=0.548 Sum_probs=143.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
-.|||+.|...++-++|++.|.+||+|..++|++|..|+++|||+||.|.++++|+.||..|||..|.+|.|+..|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ----------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 182 ----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 182 ----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
++||++|++..++++.+++.|+.||+ |..+++..+ +||+||.|.+.++|.
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAAA 214 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhHH
Confidence 67999999999999999999999999 999999998 999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCC
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADP 264 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~ 264 (418)
.|+-.+|+. .+.+..+++.|...
T Consensus 215 hAIv~mNnt--ei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 215 HAIVQMNNT--EIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHhcCc--eeCceEEEEecccc
Confidence 999999997 56777888877654
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.6e-25 Score=209.18 Aligned_cols=169 Identities=22% Similarity=0.448 Sum_probs=152.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
++.+|||+|||..+++++|+++|+.||+ |..++++.+ ..++.++|||||+|.+.++|..|+..|++. .+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 3568999999999999999999999999 999999998 677899999999999999999999999985 667889999
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
.++.+... ....++|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..|+..|||
T Consensus 78 ~~a~~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeeccccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 98876542 22347899999999999999999999999999999999887777899999999999999999999999
Q ss_pred ceeCC--eEEEEEeccCCC
Q 014815 340 YELDG--QALECSLAKPQA 356 (418)
Q Consensus 340 ~~i~g--~~l~v~~a~~~~ 356 (418)
..+.| ++|.|.++....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 99887 678999987655
No 27
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=6.2e-25 Score=196.39 Aligned_cols=243 Identities=20% Similarity=0.308 Sum_probs=186.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
......|.+++|||++|+++|.+||+.|+ |..+.+.+ .+|+..|-|||+|.+.+++.+|++ .+...+..|.|.|..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 44567799999999999999999999995 77766655 469999999999999999999995 788999999999977
Q ss_pred ccc-----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeE-EEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG-VELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 178 ~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
+.. ...|.+++||+.|++++|.++|+-+-. +.. +.++.+ ..+++.+-|||.|++.+.|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHHH
Confidence 632 246889999999999999999998875 333 445554 67779999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceecc-----------------------------------CCCCC------------------
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSW-----------------------------------ADPRN------------------ 266 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~------------------ 266 (418)
.|+..... .++.+.+.|-. ...+.
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99877652 11111111100 00000
Q ss_pred ------CC--------------------C----------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccC
Q 014815 267 ------VD--------------------S----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA 310 (418)
Q Consensus 267 ------~~--------------------~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 310 (418)
.. . ........+..++||+..+..++..+|+..-. ..|.|...
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeC
Confidence 00 0 00011377889999999999999999998644 47777777
Q ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 311 ~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.++.. .|-|+|+|.|.++|..|+.. ++..+..+.|.+.+..
T Consensus 316 ~dGr~-TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 316 PDGRA-TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred CCCcc-CCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 66666 58999999999999999974 7778888888887663
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=5.7e-25 Score=212.55 Aligned_cols=171 Identities=23% Similarity=0.385 Sum_probs=147.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
..++|||+|||..+++.+|.++|+.+|. |..+.++.+ ..++.++|||||+|.+.++|.+|+. +++. .+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEE
Confidence 4568999999999999999999999998 999999998 6788999999999999999999996 6654 455677776
Q ss_pred ccCCCCCCC--------CCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHH
Q 014815 260 SWADPRNVD--------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (418)
Q Consensus 260 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~ 331 (418)
.+....... .......++|||+|||..+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 654322111 111233689999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEeccCC
Q 014815 332 KALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 332 ~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
+|+..|||..|.|++|+|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=3.9e-25 Score=184.37 Aligned_cols=151 Identities=25% Similarity=0.492 Sum_probs=138.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
..|||+|||..+++.+|+.+|++||+|..|.|+++ |+||...+...|..|+..||+..|+|..|.|+.+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999976 9999999999999999999999999999999876543
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
.+
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
.+++|+|+||.+.++..+|+..|.+||.|..+.|++ +|+||.|.-.++|..|++.|+++.
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 127899999999999999999999999999999987 699999999999999999999999
Q ss_pred eCCeEEEEEeccCCCCC
Q 014815 342 LDGQALECSLAKPQADQ 358 (418)
Q Consensus 342 i~g~~l~v~~a~~~~~~ 358 (418)
|.|++++|+++.+.-..
T Consensus 137 ~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccceeeeeeecccccc
Confidence 99999999999875443
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=5.4e-24 Score=203.10 Aligned_cols=190 Identities=20% Similarity=0.328 Sum_probs=159.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEe-eCCCCCCCcceEEEEEcCHHHHHHHHHHhCC--CccCCeEEEe
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRC 175 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v 175 (418)
..++|||+|||+++|+++|.++|++++. +..+.++ ....+++++|||||+|.+.++|..|++.|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 4444443 2334578899999999999999999988864 3578999999
Q ss_pred cccccc-----------ccccccCCCCCCCHHHHHHHHHhh--CCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHH
Q 014815 176 STSQAK-----------YRLFIGNIPRNWGSEDLQKVVSEV--GPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSR 242 (418)
Q Consensus 176 ~~~~~~-----------~~l~v~~l~~~~~~~~l~~~f~~~--g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 242 (418)
.++.+. ++|||+||+..+++++|+++|+.| |. |..+.+++ +||||+|.+.++|.+|+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHHH
Confidence 987652 469999999999999999999999 88 88887653 49999999999999999
Q ss_pred HHhcCCCCCCCCCCceeccCCCCCCCC------------------------CCCccccEEEEcCCCCCCCHHHHHHHHhc
Q 014815 243 QKMTNPNFKLGTNAPTVSWADPRNVDS------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (418)
..|++. .+.++.+.|.|+.+..... .....+.+++++||+++.+...+..+|..
T Consensus 287 ~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 287 DELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 999987 5688999999997754320 11224688999999999999999999998
Q ss_pred ccc
Q 014815 299 HGR 301 (418)
Q Consensus 299 ~G~ 301 (418)
+|.
T Consensus 365 ~g~ 367 (578)
T TIGR01648 365 PGP 367 (578)
T ss_pred Ccc
Confidence 876
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=183.32 Aligned_cols=248 Identities=18% Similarity=0.317 Sum_probs=162.7
Q ss_pred hcCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc-cCC--e
Q 014815 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--K 171 (418)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g--~ 171 (418)
...+.+.++|||+-|...-+|++++.+|..||.|.+|.+.+..+ |.+||||||+|.+.-+|..||..|||.. +.| .
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 34455678999999999999999999999999999999999854 9999999999999999999999999876 333 5
Q ss_pred EEEeccccccc---------------------------------------------------------------------
Q 014815 172 KIRCSTSQAKY--------------------------------------------------------------------- 182 (418)
Q Consensus 172 ~i~v~~~~~~~--------------------------------------------------------------------- 182 (418)
.|.|+++...+
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 67777765320
Q ss_pred ---------------------------------cccccCCCCCCCHHHHHHHHHhhCCC---eeEEEEeccCCCCCCCcc
Q 014815 183 ---------------------------------RLFIGNIPRNWGSEDLQKVVSEVGPG---VTGVELVKDMKNSSNNRG 226 (418)
Q Consensus 183 ---------------------------------~l~v~~l~~~~~~~~l~~~f~~~g~~---i~~~~~~~~~~~~~~~~g 226 (418)
..-...|+.-.+-..-.+.+-.-|-. ..+..+ .+........-
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v-a~~lq~a~~g~ 250 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV-ADPLQQAYAGV 250 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc-cchhhhhhhhH
Confidence 00000011100000000000000000 000000 01011110000
Q ss_pred EEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEE
Q 014815 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (418)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (418)
-.|. .....++..+.. .+. .....+.. .....+..++|||..||....+.+|.++|-+||.|++.+
T Consensus 251 ---~~Y~--Aaypaays~v~~-~~p--q~p~~~~q------qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK 316 (371)
T KOG0146|consen 251 ---QQYA--AAYPAAYSPISQ-AFP--QPPPLLPQ------QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK 316 (371)
T ss_pred ---HHHh--hhcchhhhhhhh-cCC--CCcchhhh------hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeee
Confidence 0000 000011111110 000 00000000 012233459999999999999999999999999999999
Q ss_pred eccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014815 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 307 i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 358 (418)
+..|+.+..+|+|+||.|+|+.+|+.||.+|||+.|+-++|+|.+.+|+...
T Consensus 317 VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 317 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred eeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999999999999999999999999998754
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=9.7e-25 Score=191.71 Aligned_cols=178 Identities=24% Similarity=0.478 Sum_probs=154.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+.++|||++|+|+++++.|+.+|.+||.|..|.+++++.+++++||+||+|.+++...++| ....+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5789999999999999999999999999999999999999999999999999999999999 466788999999887765
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
++..- ...
T Consensus 84 ~r~~~---------------------------~~~--------------------------------------------- 91 (311)
T KOG4205|consen 84 SREDQ---------------------------TKV--------------------------------------------- 91 (311)
T ss_pred Ccccc---------------------------ccc---------------------------------------------
Confidence 43210 000
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
.....+++|||++||.++++++|++.|.+||.|..+.++.+.....++||+||.|.+.+++.+++. ..-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000023789999999999999999999999999999999999999999999999999999999987 477
Q ss_pred ceeCCeEEEEEeccCCCCCCCC
Q 014815 340 YELDGQALECSLAKPQADQKSA 361 (418)
Q Consensus 340 ~~i~g~~l~v~~a~~~~~~~~~ 361 (418)
+.|+|+.+.|..|.++......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8899999999999988776544
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.3e-25 Score=179.40 Aligned_cols=171 Identities=24% Similarity=0.472 Sum_probs=156.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
..+..|.|.-||..++.++++.+|...|+ |.+|+++++ +.++.+-||+||-|-.+.+|.+|+..+++ +.+..+.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 34667899999999999999999999999 999999999 89999999999999999999999999998 577899999
Q ss_pred eccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
|+++.|.. .......|||.+||..+|..+|.++|++||.|..-+|+.+..++.+||.|||.|+...+|+.||..||
T Consensus 115 VSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 115 VSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 99998865 33445789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCC--eEEEEEeccCCCC
Q 014815 339 KYELDG--QALECSLAKPQAD 357 (418)
Q Consensus 339 g~~i~g--~~l~v~~a~~~~~ 357 (418)
|..-.| -+|.|+||.....
T Consensus 191 G~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCCCCeEEEecCCccc
Confidence 988776 6899999976644
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=7.7e-24 Score=209.32 Aligned_cols=167 Identities=23% Similarity=0.410 Sum_probs=146.6
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccC
Q 014815 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (418)
Q Consensus 183 ~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 262 (418)
+|||+|||.++++++|.++|+.+|+ |..|+++++ ..+++++|||||.|.+..+|.+|+..+++. .+.++.+.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecc
Confidence 6899999999999999999999999 999999999 677899999999999999999999999875 356888999887
Q ss_pred CCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee
Q 014815 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (418)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 342 (418)
...... ......+|||+|||.++++++|+++|+.||.|..|+|+.+..+. ++|||||+|.+.++|.+|+..|||..+
T Consensus 78 ~~~~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~-skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 78 QRDPSL--RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGK-SRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred cccccc--cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCC-cccEEEEEECCHHHHHHHHHHhcccEe
Confidence 543221 22234689999999999999999999999999999999886444 589999999999999999999999999
Q ss_pred CCeEEEEEeccCCC
Q 014815 343 DGQALECSLAKPQA 356 (418)
Q Consensus 343 ~g~~l~v~~a~~~~ 356 (418)
.|+.|.|.....+.
T Consensus 155 ~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 155 NDKEVYVGRFIKKH 168 (562)
T ss_pred cCceEEEecccccc
Confidence 99999997665443
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.5e-23 Score=183.54 Aligned_cols=188 Identities=20% Similarity=0.358 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhCCCccCCeEEEeccccc----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEec
Q 014815 153 VELASKAIDKLNNTEFKGKKIRCSTSQA----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVK 216 (418)
Q Consensus 153 ~e~A~~A~~~l~~~~~~g~~i~v~~~~~----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~ 216 (418)
.++|.+||..-.+ ..|.|...+. -+.|||+.||.++.+++|..+|++.|+ |..+++++
T Consensus 44 ~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLMm 117 (506)
T KOG0117|consen 44 EEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLMM 117 (506)
T ss_pred HHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEEee
Confidence 6777777754433 3444543332 257999999999999999999999999 99999999
Q ss_pred cCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHH
Q 014815 217 DMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLF 296 (418)
Q Consensus 217 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 296 (418)
+ +.++.++|||||+|.+.+.|+.|+..+|+..+. .++.+.|..+.. +++|||+|||..+++++|++.|
T Consensus 118 D-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Sva----------n~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 118 D-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVA----------NCRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred c-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeee----------cceeEeccCCccccHHHHHHHH
Confidence 9 889999999999999999999999999998776 455555554433 3899999999999999999999
Q ss_pred hcccc-EEEEEeccCC-CCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeccCCCCC
Q 014815 297 EHHGR-ITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 297 ~~~G~-v~~v~i~~~~-~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v~~a~~~~~~ 358 (418)
++.+. |+.|.|.... +..++||||||+|.++..|..|.++|- .+.+.|+.+.|.||.+....
T Consensus 186 ~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 186 KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 99876 6777776544 456678999999999999999999875 45678999999999886553
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=5e-23 Score=191.86 Aligned_cols=221 Identities=27% Similarity=0.396 Sum_probs=177.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+..+|||+|||+.+++++|+.+| |||.|..++.|.+|...+++..+.||-|.|.+..
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 45789999999999999999998 8999999999999999999999999999985542
Q ss_pred cc------------------------------------------------------------------------------
Q 014815 180 AK------------------------------------------------------------------------------ 181 (418)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (418)
..
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 11
Q ss_pred -----------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHH
Q 014815 182 -----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (418)
Q Consensus 182 -----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 238 (418)
..++++|||..+..+.|..+|..||+ |..+.+. . ...-++|.|.+..+|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp-~------~G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP-P------GGTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC-c------ccceeeeeecCccch
Confidence 24789999999999999999999999 7777332 2 234589999999999
Q ss_pred HHHHHHhcCCCCCCCCCCceeccCCCCCCC---------------------------C-----C-------------C-C
Q 014815 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVD---------------------------S-----S-------------G-A 272 (418)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~-----~-------------~-~ 272 (418)
..|+..|....+. ..++.+.|+...... . . . .
T Consensus 435 r~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 435 RKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDE 512 (725)
T ss_pred HHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcc
Confidence 9999998865332 222222222111000 0 0 0 0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCC---CcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
...++|||.||++++|.++|..+|...|.|.+|.|...++.. .|.|||||+|.+.++|++|++.|+|+.|+|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 112349999999999999999999999999999998776542 35699999999999999999999999999999999
Q ss_pred Eecc
Q 014815 350 SLAK 353 (418)
Q Consensus 350 ~~a~ 353 (418)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9998
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.8e-22 Score=197.95 Aligned_cols=167 Identities=17% Similarity=0.277 Sum_probs=134.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhC-----------CCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCC
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVG-----------PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-----------~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (418)
..++|||+|||+.+++++|.++|..++ ..|..+.+ ...++||||+|.+.+.|..|+ .|++.
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 457899999999999999999999862 11333333 245899999999999999999 47764
Q ss_pred CCCCCCCCceeccCCCCCC-------------------------CCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEE
Q 014815 249 NFKLGTNAPTVSWADPRNV-------------------------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT 303 (418)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 303 (418)
.+.+..+.+........ ........++|||+|||..+|+++|+++|+.||.|.
T Consensus 246 --~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 246 --IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred --EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 34456666543221110 000122357999999999999999999999999999
Q ss_pred EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014815 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 304 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
.+.|+.+..++.++|||||+|.+.++|..||..|||..|.|+.|.|.++....
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999998888889999999999999999999999999999999999997543
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=164.15 Aligned_cols=244 Identities=22% Similarity=0.283 Sum_probs=192.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCC--CccCCeEEEec
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRCS 176 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v~ 176 (418)
..++.|.+||||+++++.+|-.++.+||.|..+.+.+. +.-||++|.+.++|...+..... -.+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 36789999999999999999999999999999998875 33799999999999885533332 23667777776
Q ss_pred ccccc----------------------------------------------ccccccCCCCCCCHHHHHHHHHhhCCCee
Q 014815 177 TSQAK----------------------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210 (418)
Q Consensus 177 ~~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~ 210 (418)
++... -.++|.++-..++-+.|..+|++||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 65311 13567888888999999999999998 66
Q ss_pred EEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCC----------C-------CCC---
Q 014815 211 GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRN----------V-------DSS--- 270 (418)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~-------~~~--- 270 (418)
.|..... .+.-.|.|.|.+...|..|...|.|+.+.-+.+.++++++.-.. . +..
T Consensus 179 KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 179 KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 5544332 22334889999999999999999999999888888877652110 0 000
Q ss_pred -------------------------------------CCc--cccEEEEcCCC-CCCCHHHHHHHHhccccEEEEEeccC
Q 014815 271 -------------------------------------GAS--QVKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPA 310 (418)
Q Consensus 271 -------------------------------------~~~--~~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~ 310 (418)
-.. .+..|.|.||. ..+|.+.|..+|.-||.|.+|+|+.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 000 14678888886 56899999999999999999999998
Q ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 311 ~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
+ +--|.|+|.+...|+.|+..|+|..+.|++|+|.+++...-..
T Consensus 334 k-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 334 K-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred C-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 7 4579999999999999999999999999999999998654433
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6.8e-21 Score=163.84 Aligned_cols=171 Identities=21% Similarity=0.445 Sum_probs=151.1
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
+++||+.+.+.+.++.|+..|.+||+ |.++.+.++ ..+++++||+||+|+-++.|..|+..||+. .++++.+.|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 57899999999999999999999999 999999999 889999999999999999999999999986 67888888874
Q ss_pred CCCCCCCC-------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q 014815 262 ADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (418)
Q Consensus 262 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~ 334 (418)
........ .....-.+|||..+.++++++||+.+|+.||.|.+|.+.+...++..||||||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 33222111 11122479999999999999999999999999999999999999988999999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCCC
Q 014815 335 KNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 335 ~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
..||-+.++|..|+|-.+-...
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 9999999999999998775443
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=5.5e-20 Score=146.23 Aligned_cols=85 Identities=19% Similarity=0.375 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
..+++|||+|||+.+|+++|+++|++||.|.+|.|+.+..++.++|||||+|.+.++|++|+..||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34579999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86543
No 41
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=162.27 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=191.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.....|..++|||..++.+|..+|+..-...-.+.++....|+..|.+.|.|.+++.-..|++ -+.+.+.+|.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345778999999999999999999987655555556665668889999999999999999995 6888899999999766
Q ss_pred ccc----------------------ccccccCCCCCCCHHHHHHHHHhhCC---CeeEEEEeccCCCCCCCccEEEEEec
Q 014815 179 QAK----------------------YRLFIGNIPRNWGSEDLQKVVSEVGP---GVTGVELVKDMKNSSNNRGFAFIEYH 233 (418)
Q Consensus 179 ~~~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~---~i~~~~~~~~~~~~~~~~g~~fv~f~ 233 (418)
... -.+.+++||++++..++..+|....+ ....+-++.. .+++..|-+||.|.
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLFA 214 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEec
Confidence 422 24678999999999999999975433 2445555544 78999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCceeccC---------------------CCCCCC------CCCCccccEEEEcCCCCC
Q 014815 234 NHKCAEYSRQKMTNPNFKLGTNAPTVSWA---------------------DPRNVD------SSGASQVKAVYVKNLPRN 286 (418)
Q Consensus 234 ~~~~a~~a~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~------~~~~~~~~~l~V~nLp~~ 286 (418)
.+.+|..|+.+... .++.+.+.+-.+ ...... ........+|.+++||+.
T Consensus 215 ~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred CHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 99999999877653 111111111000 000000 011222579999999999
Q ss_pred CCHHHHHHHHhcccc-EEE--EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014815 287 VTQDQLKKLFEHHGR-ITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 287 ~t~~~L~~~F~~~G~-v~~--v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
.+.++|.+||..|-. |.. |+++.+..+.. .|-|||+|.+.++|..|....+++...+|.|.|..+.-..
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 999999999999864 444 88888877766 5999999999999999999988877789999999886543
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=2.7e-19 Score=145.60 Aligned_cols=206 Identities=20% Similarity=0.356 Sum_probs=149.5
Q ss_pred CEEEEeCCCCCCCHHHHHH----HHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 102 SEVYIGGIPHDASEHDLRD----FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.||||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+.+|+|..+-|++++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 9999999999998765 77899999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCc
Q 014815 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (418)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (418)
+..+..+...--+..+ .-........+.... ......+..+. ++..
T Consensus 87 A~s~sdii~~~~~~~v----------~~~~k~~~~~~~~~~-~~~~~ng~~~~--------------~~~~--------- 132 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFV----------EKEKKINGEILARIK-QPLDTNGHFYN--------------MNRM--------- 132 (221)
T ss_pred ccCccchhhccCceec----------cccCccccccccccC-Ccccccccccc--------------cccc---------
Confidence 9877654333111000 000000000000000 00000000000 0000
Q ss_pred eeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh
Q 014815 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 337 (418)
....+. ......+...||+.|||..++.+.|..+|..|.....|+++... ++.|||+|.+...|..|...|
T Consensus 133 --~~p~p~--~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~l 203 (221)
T KOG4206|consen 133 --NLPPPF--LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQAL 203 (221)
T ss_pred --cCCCCc--cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhh
Confidence 000000 12335566899999999999999999999999999999998866 589999999999999999999
Q ss_pred CCceeC-CeEEEEEecc
Q 014815 338 EKYELD-GQALECSLAK 353 (418)
Q Consensus 338 ~g~~i~-g~~l~v~~a~ 353 (418)
.+..|- ...+.|.+++
T Consensus 204 q~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 204 QGFKITKKNTMQITFAK 220 (221)
T ss_pred ccceeccCceEEecccC
Confidence 998887 8888888875
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.2e-18 Score=136.00 Aligned_cols=181 Identities=19% Similarity=0.314 Sum_probs=135.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..+++|||+|||.++.+.+|.++|-+||.|..|.+... ...-.||||+|.++.+|..||..-+|..+.|+.|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999988654 334679999999999999999999999999999999987
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
...+.-.-.. | ...+..++
T Consensus 81 rggr~s~~~~-----------------G------------~y~gggrg-------------------------------- 99 (241)
T KOG0105|consen 81 RGGRSSSDRR-----------------G------------SYSGGGRG-------------------------------- 99 (241)
T ss_pred cCCCcccccc-----------------c------------ccCCCCCC--------------------------------
Confidence 6432100000 0 00000000
Q ss_pred eccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.+......-........+|.|.+||++-++++|+++..+.|.|....+.++ |++.|+|...++..-|+..|.
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000111222378999999999999999999999999999999887 689999999999999999998
Q ss_pred CceeC--CeEEEEEe
Q 014815 339 KYELD--GQALECSL 351 (418)
Q Consensus 339 g~~i~--g~~l~v~~ 351 (418)
...+. |-...+.+
T Consensus 172 ~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 172 DQKFRSEGETAYIRV 186 (241)
T ss_pred cccccCcCcEeeEEe
Confidence 76654 44444443
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.80 E-value=9.3e-18 Score=144.01 Aligned_cols=205 Identities=22% Similarity=0.375 Sum_probs=146.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
+.-++.|||.|||.++|.+++.++|++||-|. .|+|.++.+ |..+|-|.+.|.-.+++..|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44567899999999999999999999999875 488998866 999999999999999999999999999999
Q ss_pred CeEEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCC
Q 014815 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (418)
Q Consensus 170 g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (418)
|+.|+|..|+= ..-|. ...+++.++-+ .. .+-+..+....
T Consensus 210 g~~~rVerAkf----------------------q~Kge----------~~~~~k~k~k~----~~----~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAKF----------------------QMKGE----------YDASKKEKGKC----KD----KKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhhh----------------------hhccC----------cCccccccccc----cc----HHHHHHHHHhh
Confidence 99999987752 11111 00000000000 00 01111111111
Q ss_pred CCCCCCCceeccCCCCCCCCCCCccccEEEEcCCC--C--CCC-------HHHHHHHHhccccEEEEEeccCCCCCCcCc
Q 014815 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLP--R--NVT-------QDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (418)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp--~--~~t-------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g 318 (418)
..|.... ...+.....++|.|+||= . ..+ .++|++-+.+||.|.+|.|.-.+ +.|
T Consensus 250 ---------~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdG 315 (382)
T KOG1548|consen 250 ---------LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDG 315 (382)
T ss_pred ---------cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCc
Confidence 1111111 222333445899999982 1 223 36677889999999999997544 248
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 319 ~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
.+-|.|.+.++|..||+.|+|+.|.||.|..++......
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 899999999999999999999999999999988765443
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=2.5e-18 Score=136.75 Aligned_cols=82 Identities=24% Similarity=0.627 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
.+++|||+|||+++|+++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 54
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.5e-18 Score=154.91 Aligned_cols=244 Identities=20% Similarity=0.422 Sum_probs=189.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----------G-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
..+.++|+++|+.++++.+..+|..- | .|..+.+-.. +.|||++|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh-cccchh
Confidence 45679999999999999999999764 2 3666666444 779999999999999999 689988
Q ss_pred cCCeEEEecccc-----------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccC
Q 014815 168 FKGKKIRCSTSQ-----------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (418)
Q Consensus 168 ~~g~~i~v~~~~-----------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (418)
+.|+.+++.... ....+++++||...+...+.++...+|+ +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 899887774321 1246899999999999999999999999 999999999
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCC--------------------CCCCccccEE
Q 014815 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------SSGASQVKAV 278 (418)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l 278 (418)
..++.+++|+|.+|.+......|+..+++. .+++..+.+..+-..... .....++..|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 666999999999999999999999999986 334444444433222110 1223345556
Q ss_pred EEcCCC--CCC-C-------HHHHHHHHhccccEEEEEeccC-C--CCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014815 279 YVKNLP--RNV-T-------QDQLKKLFEHHGRITKVVVPPA-K--PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (418)
Q Consensus 279 ~V~nLp--~~~-t-------~~~L~~~F~~~G~v~~v~i~~~-~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 345 (418)
.+.|+- ... . -++|+.-|.+||.|..|.|++. . .-...-|..||+|.+.+++++|+.+|+|..|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 666651 111 1 1556777899999999999987 2 2223347889999999999999999999999999
Q ss_pred EEEEEeccC
Q 014815 346 ALECSLAKP 354 (418)
Q Consensus 346 ~l~v~~a~~ 354 (418)
.|...|-..
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 999988654
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=7.3e-19 Score=159.95 Aligned_cols=171 Identities=25% Similarity=0.442 Sum_probs=142.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
+++|.-.|+...+..+|.++|+..|. |..+.++.+ +.+..++|.+||+|.+......|+ .|+|. .+.+.++.|..
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEecc
Confidence 57888888888999999999999999 999999999 889999999999999998888887 55655 34455555544
Q ss_pred CCCCCCC----------CCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHH
Q 014815 262 ADPRNVD----------SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (418)
Q Consensus 262 ~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~ 331 (418)
....... .....+-.+|||+||.+++++.+|+.+|++||.|..|.+.++..++.++|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 3221110 011222344999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 332 KALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 332 ~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
+|+..|||+.|.|+.|+|........
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999987765433
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=2.6e-16 Score=136.28 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=200.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh--CCCccCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~i~ 174 (418)
.+..+-.|.|++|-..+++.+|.+.++.||+|..|..+.. +..|.|+|.+.+.|..|+... +...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3556778999999999999999999999999999988775 557999999999999998532 33446777766
Q ss_pred ecccccc-------------cc--ccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHH
Q 014815 175 CSTSQAK-------------YR--LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (418)
Q Consensus 175 v~~~~~~-------------~~--l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (418)
+.++.+. +. +.|-|--..+|.+.|..++...|+ |..|.+++. +.-.|.|+|.+.+.|+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 6666432 22 335566678899999999999999 888888765 4667999999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCCCCCCC--------------------------------------------------
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (418)
+|.+.||+..+..+...+++.++.+.....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 999999999999999999988886542100
Q ss_pred ----------------------------CCCccccEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCCCCCCcCcEE
Q 014815 270 ----------------------------SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (418)
Q Consensus 270 ----------------------------~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~a 320 (418)
....+.+.+.|.+|... ++-+.|..+|-.||.|.+|++++.+ .|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 00112578999999865 5789999999999999999999887 5789
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 321 fV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
.|++.+..+.++|+..||+..+.|.+|.|.+++...-
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999999999999976544
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.72 E-value=9.9e-16 Score=134.30 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=182.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC--CeEEEeccccc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCSTSQA 180 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~i~v~~~~~ 180 (418)
+++|.|+-+.+|-+-|..+|++||.|..|.-+...+ .=-|.|+|.+.+.|..|...|+|..|- .+.|+|.++.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 578999999999999999999999998876554321 224899999999999999999999873 36788766520
Q ss_pred ----------c-----------------------------------------------------------ccccccCC-C
Q 014815 181 ----------K-----------------------------------------------------------YRLFIGNI-P 190 (418)
Q Consensus 181 ----------~-----------------------------------------------------------~~l~v~~l-~ 190 (418)
+ ..|.|.|| +
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 0 12344444 4
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCC-
Q 014815 191 RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS- 269 (418)
Q Consensus 191 ~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (418)
..+|.+.|-.+|..||. |..+++... .+-.|.|.|.+...|..|+..|.+.. +.++.+++.++.-.....
T Consensus 308 ~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~~--l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGHK--LYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcce--ecCceEEEeeccCccccCC
Confidence 56788999999999999 999999887 23679999999999999999999864 445666665553221110
Q ss_pred ------------------------------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEE-EEeccCCCCCCcCc
Q 014815 270 ------------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNR 318 (418)
Q Consensus 270 ------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g 318 (418)
...+++.+|.+.|||.++++++|+.+|..-|-..+ .++.... +.
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd-----~k 453 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD-----RK 453 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC-----cc
Confidence 11345778999999999999999999999886544 4443322 46
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEeccC
Q 014815 319 IGFVHFAERSSAMKALKNTEKYELDG-QALECSLAKP 354 (418)
Q Consensus 319 ~afV~F~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~~ 354 (418)
+|++++.+.++|..|+..++++.+++ ..|+|+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999988885 5999999875
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=4.1e-16 Score=142.09 Aligned_cols=84 Identities=23% Similarity=0.337 Sum_probs=78.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+++|+++|+++|+.||.|+.|+|+++..++.++|||||+|.+.++|.+||..||+..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCC
Q 014815 352 AKPQ 355 (418)
Q Consensus 352 a~~~ 355 (418)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8653
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.2e-16 Score=123.52 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=71.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.+++|||+|||.++.+.+|.++|.+||.|..|.|.... +. .+||||+|.++.+|..||..-+|..++|++|+|.|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~--ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GP--PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CC--CCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34899999999999999999999999999999985543 22 3799999999999999999999999999999999997
Q ss_pred CCC
Q 014815 354 PQA 356 (418)
Q Consensus 354 ~~~ 356 (418)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 654
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=2.5e-16 Score=128.63 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
++|||++|+|.++.+.|+++|++||.|+.+.|+.|+.+++|||||||+|.+.++|.+|+...|- .|+||+..|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchhhh
Confidence 7899999999999999999999999999999999999999999999999999999999987655 79999999999865
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.68 E-value=2.1e-15 Score=135.78 Aligned_cols=165 Identities=17% Similarity=0.300 Sum_probs=130.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
..|.+++|||++|.++|.++|+.++ |..+.+.+. +++..|-|||+|.+.+++.+|++.-.. .++.+.|.|-.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~ 82 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG--IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFT 82 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc--eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEc
Confidence 3466799999999999999999998 788666544 789999999999999999999887654 56666666655
Q ss_pred CCCCCCCC-------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q 014815 262 ADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (418)
Q Consensus 262 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~A 333 (418)
+......- ....+...|.+++||+.+|+++|.+||+..-.|.. |.++.++.+. +.|-|||+|.+.+.|++|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHH
Confidence 43332211 11135578999999999999999999998765555 5566666665 579999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCCC
Q 014815 334 LKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 334 ~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
|.. |...|+-|.|.|..+....
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHH
Confidence 985 6778999999999886433
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.2e-16 Score=109.83 Aligned_cols=70 Identities=40% Similarity=0.840 Sum_probs=67.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
|||+|||+++|+++|+++|++||.|..+.+..+ .++.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6788999999999999999999999999999999986
No 55
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.5e-16 Score=131.37 Aligned_cols=169 Identities=25% Similarity=0.431 Sum_probs=130.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999875 568999999999999999999999999988888776632
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
..-. +.+.+ + .+.. |
T Consensus 74 ~~~~------------------------------------g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR------------------------------------GRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred cccc------------------------------------CCCCC-C-------------------------Cccc---h
Confidence 1100 00000 0 0000 0
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
... ........++|+|.||+..+.+++|.+.|.++|.+....+ .++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~---~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRR---YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhc---cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchh
Confidence 000 0011222378999999999999999999999999965554 14799999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 014815 342 LDGQALECSLAKP 354 (418)
Q Consensus 342 i~g~~l~v~~a~~ 354 (418)
+.++.|.+.....
T Consensus 158 ~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 158 LNGRRISVEKNSR 170 (216)
T ss_pred hcCceeeecccCc
Confidence 9999999954433
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.8e-16 Score=129.45 Aligned_cols=78 Identities=28% Similarity=0.638 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-++|||+||+|.++.+.|+++|++||+|.++.|+.|+.||++|||+||+|++.++|.+|++ -.+-.|+||+..+.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 3689999999999999999999999999999999999999999999999999999999996 45678999999887664
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=4.8e-16 Score=108.88 Aligned_cols=70 Identities=29% Similarity=0.563 Sum_probs=65.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
|||+|||.++|+++|+++|+.||.|..+.+..+ ..+.++++|||+|.+.++|.+|+..|+|..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 4555579999999999999999999999999999986
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.66 E-value=4.7e-15 Score=119.69 Aligned_cols=223 Identities=19% Similarity=0.258 Sum_probs=129.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeC-CCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC---CeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i 173 (418)
+..-+||||.+||.++...+|..+|..|---+.+.|... +...-.+.+|||.|.+...|..|+..|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344699999999999999999999999865555555443 222234579999999999999999999999985 7889
Q ss_pred Eecccccccccccc---CCCCCCCHHHH----HHHH-HhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHh
Q 014815 174 RCSTSQAKYRLFIG---NIPRNWGSEDL----QKVV-SEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245 (418)
Q Consensus 174 ~v~~~~~~~~l~v~---~l~~~~~~~~l----~~~f-~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 245 (418)
++..+..+.+.--. +-|...+.-.+ ...+ +.+- ..+....++. .-...+.+ .| +
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~---qhd~~l~~p~-~l~~~~~a-----------~a---l 172 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADD---QHDEGLSDPD-ELQEPGNA-----------DA---L 172 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchh---hccccccCcc-ccCCcccc-----------cc---C
Confidence 99888765432211 11111000000 0000 0000 0000000000 00000000 00 0
Q ss_pred cCCCCC-CCCCCceeccCCCCCC-------CCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcC
Q 014815 246 TNPNFK-LGTNAPTVSWADPRNV-------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKN 317 (418)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~ 317 (418)
....+. -..-.-...|+.+... .........+|||.||...+|++.|+.+|+.|.-...++|.. .++.
T Consensus 173 ~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~-- 248 (284)
T KOG1457|consen 173 KENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGM-- 248 (284)
T ss_pred CCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCc--
Confidence 000000 0000000011111000 012234467899999999999999999999997666555533 2233
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcee
Q 014815 318 RIGFVHFAERSSAMKALKNTEKYEL 342 (418)
Q Consensus 318 g~afV~F~~~~~A~~A~~~l~g~~i 342 (418)
+.|||+|.+.+.|..|+..|+|..|
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhccee
Confidence 6899999999999999999988765
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.2e-16 Score=127.16 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=79.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.++.+||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 014815 354 PQ 355 (418)
Q Consensus 354 ~~ 355 (418)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.1e-16 Score=126.37 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+..+|.|.|||.++++.+|+++|.+||.|..|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=1.5e-15 Score=121.11 Aligned_cols=85 Identities=26% Similarity=0.466 Sum_probs=79.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
....+|.|-||.+-++.++|+.+|++||.|-.|.|++++.+..++|||||.|....+|+.|+++|+|..|+|+.|+|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
+-...
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 75444
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.9e-15 Score=105.65 Aligned_cols=70 Identities=44% Similarity=0.819 Sum_probs=65.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|++.+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999999999999985
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=3.3e-15 Score=104.41 Aligned_cols=70 Identities=31% Similarity=0.565 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 67789999999999999999999999999999985
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=9.8e-15 Score=132.76 Aligned_cols=169 Identities=28% Similarity=0.534 Sum_probs=123.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|.++|.+||.|..+.+..++.++.++|||||+|.+.++|..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred --cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 181 --KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 181 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
........+ .... ... .
T Consensus 195 ~~~~~~~~~~~-----------~~~~----------------------------------------~~~------~---- 213 (306)
T COG0724 195 ASQPRSELSNN-----------LDAS----------------------------------------FAK------K---- 213 (306)
T ss_pred ccccccccccc-----------cchh----------------------------------------hhc------c----
Confidence 000000000 0000 000 0
Q ss_pred eccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
..............+++.+++..++...+...|..+|.+..+.+...........+.++.+.....+...+.
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 214 -----LSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred -----ccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 000001112234789999999999999999999999999888877766555433444444444444444433
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.8e-15 Score=110.11 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=76.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
+++|||+||++.+++++|.++|+++|.|..|.+-.++.+..+-|||||+|.+.++|..|++-++|+.++.++|+|.|.-.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 48999999999999999999999999999999999999988889999999999999999999999999999999998754
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=9.3e-15 Score=113.71 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+||+..+++.+|..+|..||.|..|.|...+ .|||||+|.++.+|..|+..|+|..|+|..|+|++++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3899999999999999999999999999999998865 58999999999999999999999999999999999986
Q ss_pred CCC
Q 014815 355 QAD 357 (418)
Q Consensus 355 ~~~ 357 (418)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 544
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=6e-15 Score=125.23 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. ++|||||+|.+.++|..||. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 37999999999999999999999999999999998864 25899999999999999996 999999999999999875
Q ss_pred CC
Q 014815 355 QA 356 (418)
Q Consensus 355 ~~ 356 (418)
-.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=127.09 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=76.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
+.....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..+ |||||||+|.+.++|.+|..+|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33445689999999999999999999999999999999998755 4699999999999999999999999999999999
Q ss_pred EeccCC
Q 014815 350 SLAKPQ 355 (418)
Q Consensus 350 ~~a~~~ 355 (418)
..|...
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999764
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=102.45 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|.+..+|.+|++.|+|..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3588999999999999999999999999999999887766 6899999999999999999999999999999999887
Q ss_pred CCC
Q 014815 354 PQA 356 (418)
Q Consensus 354 ~~~ 356 (418)
+..
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 643
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3e-16 Score=122.47 Aligned_cols=105 Identities=18% Similarity=0.371 Sum_probs=87.3
Q ss_pred HHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcE
Q 014815 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI 319 (418)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~ 319 (418)
+.++.||...+.++... ..+|...- ..+..|||+|||+.+|+-+|.-+|++||.|+.|.+++++.++.|+||
T Consensus 8 k~i~~lne~Elq~g~~~-~~SWH~~Y-------kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF 79 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIAD-KKSWHQEY-------KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF 79 (219)
T ss_pred HHHHHhhHHhhcccccc-ccchhhhc-------ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce
Confidence 34555555554444333 44554322 23478999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 320 afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
||+.|.+..+...|+..|||..|.||.|+|.-.
T Consensus 80 aFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 80 AFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 999999999999999999999999999999754
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=8.9e-15 Score=124.20 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+.+|+++|+++|+.||.|.+|.|++++. ++|||||+|.+.++|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 58999999999999999999999999999999998853 5799999999999999999 5999999999999998764
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4e-15 Score=109.30 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...++||||+||++.+|+++|-++|+++|+|..|.+=.|+.+..+-|||||+|-+.++|..|++.+++..|..++|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 73
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.2e-16 Score=123.18 Aligned_cols=80 Identities=28% Similarity=0.592 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++.-|||+|||+++|+.+|.-.|++||.|+.|.+++|+.||+++||||+.|.+..+...|+..|||..|.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999997543
No 74
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.3e-14 Score=118.77 Aligned_cols=93 Identities=16% Similarity=0.332 Sum_probs=84.0
Q ss_pred CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014815 266 NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (418)
Q Consensus 266 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 345 (418)
..+.....+-++|||.-|++++++..|+..|+.||.|..|+|+.++.++.++|||||+|....+..+|.+..+|..|+|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 33334446679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 014815 346 ALECSLAKPQADQ 358 (418)
Q Consensus 346 ~l~v~~a~~~~~~ 358 (418)
.|.|.+-......
T Consensus 172 ri~VDvERgRTvk 184 (335)
T KOG0113|consen 172 RILVDVERGRTVK 184 (335)
T ss_pred EEEEEeccccccc
Confidence 9999988765443
No 75
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=1.8e-12 Score=112.69 Aligned_cols=234 Identities=21% Similarity=0.272 Sum_probs=178.7
Q ss_pred EeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc--CCeEEEecccccc--
Q 014815 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQAK-- 181 (418)
Q Consensus 106 V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~--~g~~i~v~~~~~~-- 181 (418)
|-|--+.+|.+-|..++..+|+|.+|.|++. + --.|.|+|.+.+.|++|...|||..| .-++|+|.++.+.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455577999999999999999999999875 1 33699999999999999999999987 4578999887542
Q ss_pred --------------------------------------------------------------------------------
Q 014815 182 -------------------------------------------------------------------------------- 181 (418)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (418)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred ------ccccccCCCC-CCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCC
Q 014815 182 ------YRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (418)
Q Consensus 182 ------~~l~v~~l~~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (418)
..+.|-+|.. .+.-+.|-++|=.||. |..+++++. -.|.|.|++.+....++|+..|++..+. +
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~~lf--G 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNIPLF--G 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccCccc--c
Confidence 1233444443 3456778899999998 999999887 3578999999999999999999987553 3
Q ss_pred CCceeccCCCCCC------------CC---------------------CCCccccEEEEcCCCCCCCHHHHHHHHhcccc
Q 014815 255 NAPTVSWADPRNV------------DS---------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301 (418)
Q Consensus 255 ~~~~~~~~~~~~~------------~~---------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 301 (418)
..+.+..+..... ++ .-..+++.|..-|.|..+|++.|..+|..-+.
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 3333332221110 00 11235788999999999999999999987653
Q ss_pred -EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC------eEEEEEeccCC
Q 014815 302 -ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG------QALECSLAKPQ 355 (418)
Q Consensus 302 -v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g------~~l~v~~a~~~ 355 (418)
..+|+|...+.-++ .-+.++|++.++|..||..+|...|.+ -.|++-|+.++
T Consensus 433 ~~~svkvFp~kserS--ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERS--SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CcceEEeeccccccc--ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 56788887775554 468999999999999999999988875 34666666554
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=121.82 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=76.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+=+||||.-|++++++..|+..|+.||+|..|+|++++.||+++|||||+|.+..+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999997654
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.9e-14 Score=100.64 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
|...+.|||+|||+++|.+++-++|.+||.|..|+|=..+. .+|.|||.|.+..+|.+|++.|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44568899999999999999999999999999999977755 499999999999999999999999999999999988
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7754
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=9.4e-15 Score=116.59 Aligned_cols=79 Identities=24% Similarity=0.476 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-++|.|-||.+.+|.++|+.+|++||.|-+|.|..++.|+.++|||||.|....+|+.|+++|+|.+|.|+.|+|..|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998765
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=123.65 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|+|.|||+...+.||+..|.+||.|.+|.|+-+. ..||||+||+|.+.++|++|.++|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3456899999999999999999999999999999999874 45899999999999999999999999999999999998
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8754
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.4e-14 Score=117.84 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
+.+.+|||+||++.+|+++|++||+.||.|.+|+|+++ +..+++|||+|.++++|..|+ .|+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35689999999999999999999999999999999998 445689999999999999999 69999999999999876
Q ss_pred cc
Q 014815 179 QA 180 (418)
Q Consensus 179 ~~ 180 (418)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.9e-14 Score=128.06 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=69.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER--SSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~--~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.+|||+||++.+++++|+.+|+.||.|.+|.|++ .++ ||||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 7999999999999999999999999999999994 444 79999999987 78999999999999999999999997
Q ss_pred C
Q 014815 354 P 354 (418)
Q Consensus 354 ~ 354 (418)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 6
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.8e-14 Score=128.17 Aligned_cols=78 Identities=21% Similarity=0.464 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCH--HHHHHHHHHhCCCccCCeEEEecc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV--ELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...+||||||++++|+++|+.+|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 4567 99999999987 789999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8765
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=111.34 Aligned_cols=76 Identities=26% Similarity=0.486 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-.+.|||+||+..+++.+|...|..||+|.+|+|-+++ .|||||+|.++.+|..|+..|+|..|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999998864 8999999999999999999999999999999999876
Q ss_pred c
Q 014815 180 A 180 (418)
Q Consensus 180 ~ 180 (418)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2.1e-13 Score=95.73 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+|||+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.+.|.+|++.+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7789999999999999999999999999999999873
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-14 Score=115.18 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=80.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||++|...+++.-|...|-+||.|..|.++.+..+++.||||||+|.-.++|.+||..||+..+.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014815 355 QADQK 359 (418)
Q Consensus 355 ~~~~~ 359 (418)
..-..
T Consensus 90 ~kike 94 (298)
T KOG0111|consen 90 EKIKE 94 (298)
T ss_pred ccccC
Confidence 65543
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=114.30 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
..+|||+||++.+|+++|++||+.||.|.+|+|+++... ++||||+|.+.++|..|+. |+|..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 379999999999999999999999999999999998533 4799999999999999996 999999999999998765
Q ss_pred CC
Q 014815 355 QA 356 (418)
Q Consensus 355 ~~ 356 (418)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 33
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.6e-13 Score=95.23 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
+|+|+|||..++.++|+++|..||.|..+.+..+. +.++++|||+|.+.++|.+|+..+++..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999877 4557999999999999999999999999999999874
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=102.31 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=79.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
....|||.++...+|+++|.+.|..||.|.+|.+..++.++..+|||+|+|.+.++|++|+.+|||..|.|..|.|.||-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
-+..
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5543
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=5.3e-12 Score=112.06 Aligned_cols=172 Identities=22% Similarity=0.326 Sum_probs=139.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
..+.+||.|+|+++.+++|+++|....-.|..|.+..+ ..++++|++.|+|++++.+++|+..|+.- .+.++.+.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~--~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKY--EVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhc--cccCceEEE
Confidence 34569999999999999999999987655999999998 88999999999999999999999999853 444454444
Q ss_pred ccCCCCCC---------------------------------------------CC-------------------------
Q 014815 260 SWADPRNV---------------------------------------------DS------------------------- 269 (418)
Q Consensus 260 ~~~~~~~~---------------------------------------------~~------------------------- 269 (418)
.-...... ..
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 32211000 00
Q ss_pred -----------CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 270 -----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 270 -----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
-..+-..++||.||.+.+....|++.|.-.|.|..|.+..++.+ .++|||.|+|+.+-.|..||..|+
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhc
Confidence 00111467999999999999999999999999999999999988 458999999999999999999999
Q ss_pred CceeCCeEEEEEeccCCC
Q 014815 339 KYELDGQALECSLAKPQA 356 (418)
Q Consensus 339 g~~i~g~~l~v~~a~~~~ 356 (418)
+.-+..++..+.+..-..
T Consensus 278 ~~g~~~~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 278 RQGLFDRRMTVRLDRIPD 295 (608)
T ss_pred cCCCccccceeecccccc
Confidence 877788888888865433
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=4.3e-13 Score=93.81 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=67.3
Q ss_pred EeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 106 V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
|+|||..+++++|+.+|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999999873
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.5e-13 Score=93.73 Aligned_cols=71 Identities=35% Similarity=0.562 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988777778999999999999999999999999999999874
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-13 Score=111.37 Aligned_cols=83 Identities=28% Similarity=0.568 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||++|..++++.-|...|-+||.|..|.+..|..+++.|||+||+|.-.|+|..|+..||+..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 180 AKY 182 (418)
Q Consensus 180 ~~~ 182 (418)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.9e-13 Score=101.49 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
.+-.|||.++...+|+++|.+.|..||+|..+++-.++.||..+|||.|+|.+.+.|++|+..+||..|.|..|.|.||-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999874
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.3e-12 Score=86.46 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=51.7
Q ss_pred HHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 292 L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
|+++|++||.|..|.+.... +++|||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998876 489999999999999999999999999999999986
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.2e-12 Score=91.00 Aligned_cols=74 Identities=31% Similarity=0.572 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .++++|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987766 4479999999999999999999999999999999874
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=5.7e-13 Score=123.02 Aligned_cols=80 Identities=34% Similarity=0.662 Sum_probs=77.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
+.|||||||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.|||..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998653
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=2.7e-12 Score=90.54 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=68.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+|+|+|||+.+++++|+++|+.||.|..+.+..+..+ .++++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 6789999999999999999999999999999998853
No 98
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.40 E-value=2.7e-12 Score=117.86 Aligned_cols=82 Identities=26% Similarity=0.503 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
..|||+|||.+++...|+++|..||.|+...|.....+....+||||+|.+.+++..||.+ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999888766553333349999999999999999996 578899999999988875
Q ss_pred CCC
Q 014815 356 ADQ 358 (418)
Q Consensus 356 ~~~ 358 (418)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 543
No 99
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=5.3e-13 Score=104.73 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=76.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..+|||+||+..++++.|.++|-+.|.|+++++++++.+...+|||||+|.+.++|.-|++-||...+.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4799999999999999999999999999999999999999889999999999999999999999999999999999998
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=8.3e-13 Score=121.98 Aligned_cols=83 Identities=22% Similarity=0.427 Sum_probs=79.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.+++++||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCC
Q 014815 356 ADQ 358 (418)
Q Consensus 356 ~~~ 358 (418)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 443
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.1e-13 Score=132.49 Aligned_cols=235 Identities=18% Similarity=0.207 Sum_probs=192.4
Q ss_pred CCCCCEEEEeCCCCCCCHH-HHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEH-DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+...+...+.|+-+..... ..+..|+.+|.|..|++......-....+.++.+....++..|. ...+..+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCC
Confidence 3345667888887776665 57788999999999998874332333348999999999999999 578888899988887
Q ss_pred ccccc----------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHH
Q 014815 177 TSQAK----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (418)
Q Consensus 177 ~~~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (418)
.+.+. .++|++||+..+...+|...|..++. +..+.+... .+.+.-+|+||+.|.....+.+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhh
Confidence 77643 35899999999999999999999997 666666533 5788889999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEE
Q 014815 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (418)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~a 320 (418)
++....+.-+. ...|+|.|+|+..|.+.|+.+|+.+|.+++++++..+.+.. +|.|
T Consensus 725 aV~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a 780 (881)
T KOG0128|consen 725 AVAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP-KGKA 780 (881)
T ss_pred hhhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc-ccce
Confidence 88766543221 26899999999999999999999999999999888876655 8999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 321 fV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
||.|.+..+|.+++.......+.-+.+.|..+.|.....
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 999999999999999888888888888898887754443
No 102
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=4.3e-12 Score=116.60 Aligned_cols=72 Identities=28% Similarity=0.483 Sum_probs=65.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
....++|+|-|||..++.++|+.+|+.||+|..|+.-+. .+|.+||+|-+..+|++|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346789999999999999999999999999999765544 489999999999999999999999999998888
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.8e-12 Score=88.96 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=54.8
Q ss_pred HHHHHHHHh----ccccEEEEE-eccCCCC--CCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 289 QDQLKKLFE----HHGRITKVV-VPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 289 ~~~L~~~F~----~~G~v~~v~-i~~~~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 6666655 7779999999999999999999999999999999873
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.6e-11 Score=109.66 Aligned_cols=184 Identities=18% Similarity=0.307 Sum_probs=122.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEee-CCCC--CCCcc---eEEEEEcCHHHHHHHHHHhCCCccCCe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMK-GKDS--SENKG---FAFVTFRNVELASKAIDKLNNTEFKGK 171 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~-~~~~--g~~~g---~afV~F~~~e~A~~A~~~l~~~~~~g~ 171 (418)
+.-++.|||++||++++++.|...|..||.+.- .... .... -.++| |+|+-|.++.++..-+.++.- .-.+-
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 445788999999999999999999999998753 2221 1111 12456 999999999999888876543 11222
Q ss_pred EEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCC
Q 014815 172 KIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (418)
Q Consensus 172 ~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 251 (418)
.+.|....-+.. .|. |....+... -||..
T Consensus 334 yf~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv~d------------------- 362 (520)
T KOG0129|consen 334 YFKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFVLD------------------- 362 (520)
T ss_pred EEEEecCccccc-cee---------------------EEeeEeccc----------hhhhc-------------------
Confidence 233322111100 000 111111000 00000
Q ss_pred CCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHh-ccccEEEEEeccCCCCCCcCcEEEEEeCCHHHH
Q 014815 252 LGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSA 330 (418)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A 330 (418)
......+.+||||++||.-++.++|..+|. .||.|..|-|-.|..-..++|-|-|+|.+..+-
T Consensus 363 ----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsY 426 (520)
T KOG0129|consen 363 ----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAY 426 (520)
T ss_pred ----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHH
Confidence 112233458999999999999999999999 699999999999987888899999999999999
Q ss_pred HHHHHH----hCCceeCCeEEEEEe
Q 014815 331 MKALKN----TEKYELDGQALECSL 351 (418)
Q Consensus 331 ~~A~~~----l~g~~i~g~~l~v~~ 351 (418)
.+||.+ |+...| .++|.|+.
T Consensus 427 i~AIsarFvql~h~d~-~KRVEIkP 450 (520)
T KOG0129|consen 427 IKAISARFVQLDHTDI-DKRVEIKP 450 (520)
T ss_pred HHHHhhheEEEecccc-ceeeeecc
Confidence 999986 222222 35666653
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=6.4e-12 Score=87.19 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=55.9
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeeCCCC--CCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 115 EHDLRDFCQ----SIGEVTEVR-IMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 115 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888898 999999996 7777766 899999999999999999999999999999999986
No 106
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=6e-12 Score=114.36 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=76.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+|||+.+|+++|+++|..||.|..|.+..++.++.++|||||+|.+.++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999998888899999999999999999999999999999999999653
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=1.1e-11 Score=81.98 Aligned_cols=56 Identities=43% Similarity=0.748 Sum_probs=51.0
Q ss_pred HHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 118 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
|+++|++||.|..+.+..+. +++|||+|.+.++|..|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998763 589999999999999999999999999999999875
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.6e-12 Score=105.36 Aligned_cols=85 Identities=21% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.-++++.|||..||....+.+|...|-.||.|++.+++.|+.|+.+|.|+||.|.++.+|..||..|||..|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
..+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 76654
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.6e-12 Score=109.45 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.|+...|||..|.+-+|+++|.-+|+.||+|.+|.++++..||.+..||||+|.+.+++.+|.=+|++..|..+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 875
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.25 E-value=2.4e-11 Score=107.47 Aligned_cols=181 Identities=20% Similarity=0.287 Sum_probs=141.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..+++|++++.+.+.+..+..++..+|.+..+.+........++|+++|.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46899999999999999999999999998888888877888999999999999999999996443345555555433222
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
... +.+. . .
T Consensus 167 ~~~-~~~~-----------------------------n---~-------------------------------------- 175 (285)
T KOG4210|consen 167 RRG-LRPK-----------------------------N---K-------------------------------------- 175 (285)
T ss_pred ccc-cccc-----------------------------c---h--------------------------------------
Confidence 110 0000 0 0
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
............++|+||+..++.++|+.+|..+|.|..++++.++.++.++|||||.|.+...+..++.. ..
T Consensus 176 ------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 176 ------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred ------hcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 00000011113444999999999999999999999999999999999999999999999999999999987 78
Q ss_pred ceeCCeEEEEEeccCCCCC
Q 014815 340 YELDGQALECSLAKPQADQ 358 (418)
Q Consensus 340 ~~i~g~~l~v~~a~~~~~~ 358 (418)
..+.++++.|.+..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CcccCcccccccCCCCccc
Confidence 8899999999999886543
No 111
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=104.31 Aligned_cols=72 Identities=29% Similarity=0.617 Sum_probs=69.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
.+|||+|||..+++.+|+.+|++||+|..|.|++ .||||...+...|..||+.|||.+|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999987 58999999999999999999999999999999999887
No 112
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=6.8e-11 Score=96.93 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHH----HHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 276 KAVYVKNLPRNVTQDQLKK----LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
.+|||.||+..+..++|+. +|++||.|..|...+.. ..||-|||.|.+.+.|..|+.+|+|+.|.|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 5999999999999999988 99999999999887543 3479999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
|+.+..-
T Consensus 87 A~s~sdi 93 (221)
T KOG4206|consen 87 AKSDSDI 93 (221)
T ss_pred ccCccch
Confidence 9876553
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=108.11 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
...+|||..||..+++..+.++|...-.|+....+...-+++.++-|||.|..++++.+|+..-+.+.+..|.|+|....
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 35689999999999999999999988777774334444568889999999999999999998778888889999996543
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=3.8e-11 Score=104.97 Aligned_cols=143 Identities=23% Similarity=0.277 Sum_probs=113.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcc----CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
-.|.+++||+++|+.++.+||..- |-+..|.++... .|+..|-|||.|..+++|..||. .|...|.-|.|.+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 358899999999999999999743 234556666543 49999999999999999999995 455555555554432
Q ss_pred c-------------------------------------cccccccccCCCCCCCHHHHHHHHHhhCCCeeE--EEEeccC
Q 014815 178 S-------------------------------------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG--VELVKDM 218 (418)
Q Consensus 178 ~-------------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~--~~~~~~~ 218 (418)
+ ..+.+|.+++||+..+.++|..+|..|-..|.- +.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 2 234679999999999999999999999865555 666665
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHHhcCC
Q 014815 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (418)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (418)
..++..|-+||+|.+.+.|..|....+++
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 78999999999999999999998887764
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=8.5e-11 Score=94.65 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=76.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc-ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
..++|..||..+.+..|..+|.+| |.|..+++.+++.++.|+|||||+|.+.+.|.-|-+.||++-|.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 679999999999999999999998 7888999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 014815 355 Q 355 (418)
Q Consensus 355 ~ 355 (418)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 6
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.8e-11 Score=103.26 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=80.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
++...|||.-|.+-+|.++|.-+|+.||.|.+|.|+++..++-+-.||||+|.+.+++++|.-.|++..|+.++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34589999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
.+...
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 87655
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.17 E-value=4.3e-10 Score=105.70 Aligned_cols=162 Identities=11% Similarity=0.042 Sum_probs=110.9
Q ss_pred ccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceec---
Q 014815 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS--- 260 (418)
Q Consensus 184 l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~--- 260 (418)
+.+++.+++.+..+++.+|...- +....+..+ .......|.++|.|.....+..|++..+.- .-.+.+.+.
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~---~~~R~~q~~P~g 387 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSD---DVNRPFQTGPPG 387 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchh---hhhcceeecCCC
Confidence 45567778888888888876554 444555444 344455889999999999999997664421 111111110
Q ss_pred ------------------------------cCCCCCCCC--CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEE-EEe
Q 014815 261 ------------------------------WADPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVV 307 (418)
Q Consensus 261 ------------------------------~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i 307 (418)
.+....... .......+|||..||..++...+.++|...-.|+. |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 000000000 12233689999999999999999999998767766 777
Q ss_pred ccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 308 ~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+...+.. ++.|||.|...+++.+|+..-+.+.++-|.|+|.-.
T Consensus 468 t~~P~~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccc-cchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77665554 789999999999999998876777777788898743
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.15 E-value=1e-10 Score=94.15 Aligned_cols=81 Identities=28% Similarity=0.523 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...-++|..+|.-+-+..|..+|.+| |.|..+++-+++.||.++|||||+|.+++.|.-|.+.||+..|.++.|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999998 88999999999999999999999999999999999999999999999988664
Q ss_pred cc
Q 014815 179 QA 180 (418)
Q Consensus 179 ~~ 180 (418)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=9.2e-12 Score=100.63 Aligned_cols=142 Identities=25% Similarity=0.352 Sum_probs=116.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.++..+||||.|+...++++-|.++|-+-|+|..|.|..+++ +..+ ||||.|.+.-++.-|++.+||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 355679999999999999999999999999999999988765 5556 99999999999999999999999988888664
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (418)
T Consensus 83 -------------------------------------------------------------------------------- 82 (267)
T KOG4454|consen 83 -------------------------------------------------------------------------------- 82 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeccCCCCCCCCCCCccccEEEEcC----CCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHH
Q 014815 257 PTVSWADPRNVDSSGASQVKAVYVKN----LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (418)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~ 332 (418)
++.+| |...++.+.+...|+..|.+..+++..+.++. ++.++|+.+--.-+.=.
T Consensus 83 ---------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r-nrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 83 ---------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR-NRNFGFVTYQRLCAVPF 140 (267)
T ss_pred ---------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCC-ccCccchhhhhhhcCcH
Confidence 22333 55667888899999999999999999988844 47899998876666666
Q ss_pred HHHHhCCcee
Q 014815 333 ALKNTEKYEL 342 (418)
Q Consensus 333 A~~~l~g~~i 342 (418)
++....+...
T Consensus 141 ~~~~y~~l~~ 150 (267)
T KOG4454|consen 141 ALDLYQGLEL 150 (267)
T ss_pred HhhhhcccCc
Confidence 6665555443
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=9.4e-11 Score=113.34 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=132.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+....+|||++||+..+++.+|+..|..+|.|..|.|...+. +.-.-|+||.|.+...+-+|...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345678999999999999999999999999999999876532 4456689999999999888887777665543333222
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (418)
+.+.
T Consensus 447 lG~~---------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 447 LGQP---------------------------------------------------------------------------- 450 (975)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred ceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
....++.+++++|+.++....|...|..||.|..|.+-... -||+|.|.+...|+.|+..
T Consensus 451 --------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 451 --------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHD 510 (975)
T ss_pred --------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHH
Confidence 11123789999999999999999999999999988875443 5999999999999999999
Q ss_pred hCCceeCC--eEEEEEeccCCCCC
Q 014815 337 TEKYELDG--QALECSLAKPQADQ 358 (418)
Q Consensus 337 l~g~~i~g--~~l~v~~a~~~~~~ 358 (418)
|.|..|+| ++|+|.|+.+....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCC
Confidence 99999986 88999999876543
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=3.3e-10 Score=98.22 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=70.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH-hCCceeCCeEEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN-TEKYELDGQALECS 350 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~-l~g~~i~g~~l~v~ 350 (418)
....++|||++|-..+++.+|+++|-+||.|.+|++...+ ++|||+|.+..+|+.|... +|...|+|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4456899999999999999999999999999999998875 8999999999999999887 56778899999999
Q ss_pred eccC
Q 014815 351 LAKP 354 (418)
Q Consensus 351 ~a~~ 354 (418)
|.++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9999
No 122
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=6e-10 Score=103.75 Aligned_cols=151 Identities=22% Similarity=0.438 Sum_probs=120.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
....+||++||..+++.++++++..||.+....++.+..+|.++||||.+|.++.....|+..|||..+.++.|.|..+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999997764
Q ss_pred cccc----------ccccCCCC-----------------CCCH-------------HHHHHHHHhhCCCeeEEEEeccC-
Q 014815 180 AKYR----------LFIGNIPR-----------------NWGS-------------EDLQKVVSEVGPGVTGVELVKDM- 218 (418)
Q Consensus 180 ~~~~----------l~v~~l~~-----------------~~~~-------------~~l~~~f~~~g~~i~~~~~~~~~- 218 (418)
.... ..+.+|+. .++. ++++.-+..||. |..|.+.+..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~~ 446 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPYP 446 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCCC
Confidence 2210 01111111 1122 244556777888 8888887762
Q ss_pred -CCCCCCccEEEEEecCHHHHHHHHHHhcCCCCC
Q 014815 219 -KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFK 251 (418)
Q Consensus 219 -~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 251 (418)
.......|-.||+|.+.++++.|++.|+|..|.
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 234455677899999999999999999998653
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=3.2e-10 Score=107.96 Aligned_cols=76 Identities=28% Similarity=0.548 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-++||||++|+..+++.+|+++|+.||.|.+|.++.. +|||||.+....+|.+|+.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3789999999999999999999999999999999875 8999999999999999999999999999999999986
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 43
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=6.2e-10 Score=106.09 Aligned_cols=78 Identities=24% Similarity=0.519 Sum_probs=72.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
++||||++|+..+++.+|.++|+.||.|.+|.++..+ +||||.+....+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 6899999999999999999999999999999998764 9999999999999999999999999999999999976
Q ss_pred CCCC
Q 014815 355 QADQ 358 (418)
Q Consensus 355 ~~~~ 358 (418)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 5443
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=6.2e-10 Score=102.30 Aligned_cols=81 Identities=22% Similarity=0.490 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-++.|||.+|...+...+|+++|++||.|+..+++.+..+.-.+.|+||++.+.++|.+||+.||...|+|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46789999999999999999999999999999999998887789999999999999999999999999999999998775
Q ss_pred c
Q 014815 180 A 180 (418)
Q Consensus 180 ~ 180 (418)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=1.3e-09 Score=96.74 Aligned_cols=81 Identities=32% Similarity=0.637 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
...|||++||.++++++|+++|.+||.|..+.++.|..+.+++||+||.|.+.+++.+++ ...-+.|.|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 568999999999999999999999999999999999999999999999999999999999 4788899999999998876
Q ss_pred cc
Q 014815 181 KY 182 (418)
Q Consensus 181 ~~ 182 (418)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 53
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=94.62 Aligned_cols=76 Identities=34% Similarity=0.552 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh-CCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v~~ 177 (418)
...++|||++|-..+++.+|+++|-+||.|.++.++.. +++|||+|.+..+|..|.+.+ +...|.|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34679999999999999999999999999999999876 679999999999999988765 44557999999999
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=5.8e-09 Score=84.92 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=72.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEecc-CCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP-AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQALECS 350 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~-~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~---g~~l~v~ 350 (418)
.++|||.+||.++...+|..+|+.|--.....|.. ++.+...+.+|||.|.+...|..|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 58999999999999999999999986666555543 3333444579999999999999999999999997 7999999
Q ss_pred eccCCCCCCCC
Q 014815 351 LAKPQADQKSA 361 (418)
Q Consensus 351 ~a~~~~~~~~~ 361 (418)
+|+.+..+..+
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99887665443
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.96 E-value=8.4e-10 Score=91.58 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=118.5
Q ss_pred cccccccCCCCCCCHHH-H--HHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCc
Q 014815 181 KYRLFIGNIPRNWGSED-L--QKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (418)
Q Consensus 181 ~~~l~v~~l~~~~~~~~-l--~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (418)
-..++++++...+..+- | ...|+.+-. .....++.+ ..+.-++++|+.|.....-.++...-+++ .++...+
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~-L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~V 170 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPS-LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPV 170 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchh-hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccc--cccCcce
Confidence 34555666555444433 2 445554443 344444444 44556778888887666655554444433 2333333
Q ss_pred eeccCCCCCCCC--CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 258 TVSWADPRNVDS--SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 258 ~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
+.........+. .-.....+||++.|...++.+-|-..|.+|-.....++++++.++.++||+||.|.+..++..|+.
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 333322222222 112345899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEeccCCC
Q 014815 336 NTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 336 ~l~g~~i~g~~l~v~~a~~~~ 356 (418)
.|+|..++.|.|++.-+..+.
T Consensus 251 em~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hhcccccccchhHhhhhhHHh
Confidence 999999999999987765544
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=1.5e-09 Score=99.89 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
-.++|+|.+|...+...+|+.+|++||.|+-.+|+.+..+..-++|+||++.+.++|.+||..||.+.|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35889999999999999999999999999999999887776668999999999999999999999999999999999886
Q ss_pred C
Q 014815 354 P 354 (418)
Q Consensus 354 ~ 354 (418)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.9e-10 Score=110.82 Aligned_cols=136 Identities=24% Similarity=0.317 Sum_probs=118.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
..++||+||+..+.+.+|...|..+|.+..+.+....+.++.+|+|||.|..++++.+|+.... ..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh----------
Confidence 4679999999999999999999999999888888777889999999999999999999996544 44444
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCC
Q 014815 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (418)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (418)
+..++|+|.|+..|.+.++.++..+|. +.+.+++.. ..++++|.++|.|.+...+.++...+....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhhhh
Confidence 567899999999999999999999998 888876665 7789999999999999999998776655433
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.85 E-value=2.2e-08 Score=72.66 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc--cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD----GQALEC 349 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~----g~~l~v 349 (418)
++|.|+|||...|.++|.+++.. .|....+.++.|-.+..+.|||||.|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999876 367888999999989999999999999999999999999998876 477788
Q ss_pred EeccC
Q 014815 350 SLAKP 354 (418)
Q Consensus 350 ~~a~~ 354 (418)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.84 E-value=3.4e-08 Score=71.68 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=68.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhc--cCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC----CeEEEe
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK----GKKIRC 175 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~----g~~i~v 175 (418)
+||.|+|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+..+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998865 367888899999999999999999999999999999999999885 355566
Q ss_pred cccc
Q 014815 176 STSQ 179 (418)
Q Consensus 176 ~~~~ 179 (418)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=4.7e-08 Score=83.30 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
..+|+|.|||+.|+.++|+++|..||.+..+-|..++.+.+ .|.|-|.|...++|.+|++.+||..++|+.+++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 37899999999999999999999999999999999987777 69999999999999999999999999999999998876
Q ss_pred CCCC
Q 014815 355 QADQ 358 (418)
Q Consensus 355 ~~~~ 358 (418)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5543
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=2.4e-08 Score=85.00 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|+|.|||+.+++++|+++|..||.+..+.+-.++ +|.+.|+|-|.|...++|.+|++.+++..+.|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999888888775 59999999999999999999999999999999999887655
Q ss_pred c
Q 014815 180 A 180 (418)
Q Consensus 180 ~ 180 (418)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=8.6e-09 Score=95.26 Aligned_cols=74 Identities=31% Similarity=0.486 Sum_probs=67.8
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
....+..+|+|-|||..|+.++|+.+|+.||.|..|+..+.+ +|..||+|.+..+|++|+++|++..|.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344566899999999999999999999999999998876665 78999999999999999999999999999998
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.72 E-value=1.5e-08 Score=84.37 Aligned_cols=82 Identities=16% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+..+||.+.|..+++++-|...|.+|-.....++++++.||+++||+||.|.+..++.+|+..|+|..++.|.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=7.6e-08 Score=82.40 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=76.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
....+||+|+.+.+|.+.+...|+.||.|..|.|+.++..+.++||+||+|.+.+.++.|+. |++..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34789999999999999999999999999999999999998889999999999999999999 99999999999999887
Q ss_pred CC
Q 014815 354 PQ 355 (418)
Q Consensus 354 ~~ 355 (418)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.71 E-value=5e-08 Score=84.87 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 346 (418)
.+.|||.|||.++|.+++.++|++||.|.. |+|.++..+.. +|-|.|.|--.+++..|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 467999999999999999999999998874 88989888655 899999999999999999999999999999
Q ss_pred EEEEeccC
Q 014815 347 LECSLAKP 354 (418)
Q Consensus 347 l~v~~a~~ 354 (418)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999864
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.70 E-value=3.2e-09 Score=93.42 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=130.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC---CCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..|-|.||.+.+|.++++.+|.-.|.|..++|+.+... .-....|||.|.+...+..|- .|.+.++-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47999999999999999999999999999999885432 234568999999999998887 68888888888877654
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
.... -.. ..+|..++.......++.. .+ |.|.+... . .++..+..
T Consensus 87 ~~~~-----------~p~--r~af~~l~~~navprll~p---dg-------~Lp~~~~l-----t-------~~nh~p~a 131 (479)
T KOG4676|consen 87 GDEV-----------IPD--RFAFVELADQNAVPRLLPP---DG-------VLPGDRPL-----T-------KINHSPNA 131 (479)
T ss_pred CCCC-----------Ccc--HHHHHhcCcccccccccCC---CC-------ccCCCCcc-----c-------cccCCccc
Confidence 3210 011 1144444431100000000 00 00000000 0 00000000
Q ss_pred eccCCCCCCCC----CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q 014815 259 VSWADPRNVDS----SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (418)
Q Consensus 259 ~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~ 334 (418)
+-. .|...+. ....-.++|+|.+|+..+...++.+.|..+|.|...++..... .-+|.|.|....+...|+
T Consensus 132 ilk-tP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 132 ILK-TPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred eec-CCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHH
Confidence 000 0000000 0001137899999999999999999999999998887754432 246779999888888888
Q ss_pred HHhCCceeCCeEEEEEeccC
Q 014815 335 KNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 335 ~~l~g~~i~g~~l~v~~a~~ 354 (418)
. ++|+.+.-....+..-+|
T Consensus 207 r-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred H-hcchhhhhhhhhhhhcCc
Confidence 7 577777654444444444
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=2.3e-08 Score=85.59 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.+.+.+||+|+.+.+|.+++..+|+.||.|..+.|.+++.++.++||+||+|.+.+.+..|+. |++..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred c
Q 014815 179 Q 179 (418)
Q Consensus 179 ~ 179 (418)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.69 E-value=1.4e-07 Score=64.66 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=49.2
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 276 KAVYVKNLPRNVTQDQ----LKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
..|+|.|||.+.+... |++++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999887655 567777886 576663 2689999999999999999999999999999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
|....+.
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 9965443
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.69 E-value=3.6e-08 Score=91.00 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..+|||+|||++++..+|+++|+.||.|....|......++..+||||+|.+.+++..||++ +...|.+++|.|...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 35699999999999999999999999999998877653345559999999999999999964 577889999988753
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.68 E-value=1.2e-07 Score=65.13 Aligned_cols=70 Identities=26% Similarity=0.450 Sum_probs=48.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHh----cc-CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQ----SI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~----~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+.|+|.|||.+.....|+..+. -| |.|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999999887765554 55 4777662 5689999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 145
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=2.9e-08 Score=82.59 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
..+||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..|+..||+..|.|-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988754 89999999999999999999999999988999999876
Q ss_pred CC
Q 014815 356 AD 357 (418)
Q Consensus 356 ~~ 357 (418)
+.
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 54
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=90.09 Aligned_cols=88 Identities=24% Similarity=0.344 Sum_probs=77.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCC---CCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 346 (418)
...+.+++|||+||++.++++.|...|..||.|..|+|+..+ ...+.+.||||-|-+..+|++|+..|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 345667999999999999999999999999999999998655 33445679999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 014815 347 LECSLAKPQAD 357 (418)
Q Consensus 347 l~v~~a~~~~~ 357 (418)
+++-|++...-
T Consensus 249 ~K~gWgk~V~i 259 (877)
T KOG0151|consen 249 MKLGWGKAVPI 259 (877)
T ss_pred eeecccccccc
Confidence 99999976543
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=1.2e-08 Score=90.80 Aligned_cols=157 Identities=18% Similarity=0.332 Sum_probs=120.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc-cCCeEEEeccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRCSTSQA 180 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g~~i~v~~~~~ 180 (418)
..+|++||.+.++..+|..+|...-.-.+-.++. ..||+||.+.+..-|.+|++.+++.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3589999999999999999997652111111222 26799999999999999999999875 7888888765443
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceec
Q 014815 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (418)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (418)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 211
Q ss_pred cCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc
Q 014815 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 340 (418)
.++.+-|+|+|+...++.|-.+...||.|..|..+....-. -..-|+|.+.+.++.||..|+|.
T Consensus 79 -------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et---avvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 79 -------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET---AVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred -------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH---HHHHHHHHHHHHHHHHHHhhcch
Confidence 12568899999999999999999999999988765432111 12347899999999999999999
Q ss_pred eeCCeEEEEEeccCCCC
Q 014815 341 ELDGQALECSLAKPQAD 357 (418)
Q Consensus 341 ~i~g~~l~v~~a~~~~~ 357 (418)
.+....++|.|-.....
T Consensus 143 Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HhhhhhhhcccCchhhh
Confidence 99999999998755443
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.57 E-value=4.4e-07 Score=79.90 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=78.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 343 (418)
.....+|||-+||..++..+|..+|.++|.|.. |.|.+++.+..+|+-|.|.|.+...|+.|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 334578999999999999999999999998753 788889999999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCC
Q 014815 344 GQALECSLAKPQAD 357 (418)
Q Consensus 344 g~~l~v~~a~~~~~ 357 (418)
|.+|+|.+|.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987764
No 149
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.54 E-value=1.4e-07 Score=78.82 Aligned_cols=74 Identities=31% Similarity=0.401 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC--------CCCcc----eEEEEEcCHHHHHHHHHHhCCCc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS--------SENKG----FAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
....||+++||+.+...-|+++|+.||.|-.|.+.....+ |.++. -++|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999999877554 33333 37899999999999999999999
Q ss_pred cCCeEE
Q 014815 168 FKGKKI 173 (418)
Q Consensus 168 ~~g~~i 173 (418)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998754
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=2.3e-07 Score=88.06 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC---CCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
+|..+.|||+||++.+++..|...|..||+|.+|+|+--+. ..+.+.|+||-|.+..+|.+|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 56678999999999999999999999999999999976532 235577999999999999999999999999999999
Q ss_pred ecccc
Q 014815 175 CSTSQ 179 (418)
Q Consensus 175 v~~~~ 179 (418)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98873
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=6.4e-08 Score=78.74 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=72.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||.|+...++++-|.++|-..|.|..|.|+.++++.. + ||||.|.+.-+..-|++.|||..+.++.+.|++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 348999999999999999999999999999999999998877 3 99999999999999999999999999999888764
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.37 E-value=1e-06 Score=65.74 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=46.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC-----ceeCCeEEEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-----YELDGQALECS 350 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g-----~~i~g~~l~v~ 350 (418)
+.|+|.+++..++.++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|++|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999998764 5899999999999999998653 45667666665
Q ss_pred ec
Q 014815 351 LA 352 (418)
Q Consensus 351 ~a 352 (418)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.24 E-value=1.9e-06 Score=75.06 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcccc--EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.++||+||-|.+|+++|.+.+...|. +..+++..++.++.+||||+|-..+..+..+.++.|-.++|.|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 68999999999999999999988774 6788899999999999999999999999999999898999998655443
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.23 E-value=1.5e-06 Score=76.59 Aligned_cols=83 Identities=24% Similarity=0.453 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCe
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 171 (418)
...+|||.+||..+++.+|.++|.++|.|. .|+|.+++.|++.|+-|.|.|.+.-.|+.|+.-+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 457899999999999999999999999874 478889999999999999999999999999999999999999
Q ss_pred EEEeccccccc
Q 014815 172 KIRCSTSQAKY 182 (418)
Q Consensus 172 ~i~v~~~~~~~ 182 (418)
+|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.19 E-value=3.6e-06 Score=62.80 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=40.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~ 166 (418)
..|+|.+++..++.++|+++|+.||.|..|.+.+. ...|||.|.+.+.|.+|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999998765 347999999999999999877654
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=6.5e-06 Score=71.55 Aligned_cols=89 Identities=19% Similarity=0.462 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCCCCHHH----H--HHHHhccCCeeEEEEeeCCCCC-CCcce--EEEEEcCHHHHHHHHHHhCCCccCCe
Q 014815 101 GSEVYIGGIPHDASEHD----L--RDFCQSIGEVTEVRIMKGKDSS-ENKGF--AFVTFRNVELASKAIDKLNNTEFKGK 171 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~----l--~~~f~~~G~v~~v~i~~~~~~g-~~~g~--afV~F~~~e~A~~A~~~l~~~~~~g~ 171 (418)
..-+||-+||+.+..++ | .++|.+||.|..|.|-+.-.+. ...+. .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999987766 2 2799999999888776543111 11222 49999999999999999999999999
Q ss_pred EEEeccccccc-cccccCC
Q 014815 172 KIRCSTSQAKY-RLFIGNI 189 (418)
Q Consensus 172 ~i~v~~~~~~~-~l~v~~l 189 (418)
.|+..+...+. +.|++|+
T Consensus 194 ~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred eEeeecCchHHHHHHHcCC
Confidence 99998876543 3344443
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=4.1e-05 Score=66.73 Aligned_cols=80 Identities=21% Similarity=0.464 Sum_probs=63.8
Q ss_pred cccEEEEcCCCCCCCHHHH------HHHHhccccEEEEEeccCCCCC-CcCcEE--EEEeCCHHHHHHHHHHhCCceeCC
Q 014815 274 QVKAVYVKNLPRNVTQDQL------KKLFEHHGRITKVVVPPAKPGQ-EKNRIG--FVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L------~~~F~~~G~v~~v~i~~~~~~~-~~~g~a--fV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
+..-+||-+||+.+..+++ .++|.+||.|..|.|-+..... +-.+.+ ||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3467899999998866652 5889999999999887654211 111333 999999999999999999999999
Q ss_pred eEEEEEecc
Q 014815 345 QALECSLAK 353 (418)
Q Consensus 345 ~~l~v~~a~ 353 (418)
|.|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999874
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=4.1e-05 Score=49.21 Aligned_cols=53 Identities=19% Similarity=0.468 Sum_probs=43.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHH
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~ 160 (418)
++.|-|.+.|++..+. |..+|..||+|..+.+... ..+.||+|.+..+|.+||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 3678999999887765 5558999999999888632 558999999999999985
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.85 E-value=1e-05 Score=71.89 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=72.4
Q ss_pred CEEE-EeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 102 SEVY-IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 102 ~~l~-V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++| |+||+..+++++|+.+|..+|.|..+++..+..++.++|||||.|.+...+..++.. ....+.++++.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999976 88889999999987765
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 4
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.82 E-value=2.2e-05 Score=68.70 Aligned_cols=78 Identities=15% Similarity=0.354 Sum_probs=70.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
-++||+||-|.+|+++|.+.+...| .+..++++.++..|+++|||.|...+..+.++.++.|....|+|+.-.|..++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999998877 57889999999999999999999999999999999999999999877775544
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=6e-05 Score=48.43 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=42.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~ 334 (418)
+.|.|.+.+.+.. +.|+.+|..||.|..+.+... ..+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5788999987755 455668889999999998732 368999999999999985
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=6.7e-05 Score=67.69 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=61.9
Q ss_pred eeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccC---CCC---CCc-------CcEEEEEe
Q 014815 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA---KPG---QEK-------NRIGFVHF 324 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~---~~~-------~g~afV~F 324 (418)
+|....+-..-....-++++|.+-|||.+-.-+.|.++|+.||.|..|+|..- ... ..+ +-+|||+|
T Consensus 214 KVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 214 KVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred eeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhh
Confidence 33333333333333446799999999999888999999999999999999876 211 111 35799999
Q ss_pred CCHHHHHHHHHHhCC
Q 014815 325 AERSSAMKALKNTEK 339 (418)
Q Consensus 325 ~~~~~A~~A~~~l~g 339 (418)
...+.|.+|.+.|+.
T Consensus 294 e~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 294 EEVEAARKARELLNP 308 (484)
T ss_pred hhhHHHHHHHHhhch
Confidence 999999999998864
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=4e-05 Score=71.39 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=62.2
Q ss_pred CCCEEEEeCCCCC--CCH----HHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC-CeE
Q 014815 100 HGSEVYIGGIPHD--ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKK 172 (418)
Q Consensus 100 ~~~~l~V~nLp~~--~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~ 172 (418)
-.+.|+|-|+|-- ..- .-|..+|+++|+|..+.+..+..+| ++||.|++|.+..+|..|++.|||..|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999953 222 3366889999999999999887644 9999999999999999999999999874 566
Q ss_pred EEec
Q 014815 173 IRCS 176 (418)
Q Consensus 173 i~v~ 176 (418)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.71 E-value=2.3e-05 Score=65.81 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCC--------CCcCc----EEEEEeCCHHHHHHHHHHhCCceeC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG--------QEKNR----IGFVHFAERSSAMKALKNTEKYELD 343 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~--------~~~~g----~afV~F~~~~~A~~A~~~l~g~~i~ 343 (418)
..||+.|||+.+....|+++|+.||.|-+|.|.+.... +.++. -|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999999999876644 11122 3789999999999999999999999
Q ss_pred CeE
Q 014815 344 GQA 346 (418)
Q Consensus 344 g~~ 346 (418)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00013 Score=68.08 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCC--C----HHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC-CeEEE
Q 014815 276 KAVYVKNLPRNV--T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALE 348 (418)
Q Consensus 276 ~~l~V~nLp~~~--t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~l~ 348 (418)
.+|+|-|+|.-- . ..-|..+|+++|.|+.+.++.+..++. +||.|++|.+..+|..|++.|||+.|+ .+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 789999998532 2 244678899999999999999988885 899999999999999999999999987 57777
Q ss_pred EEec
Q 014815 349 CSLA 352 (418)
Q Consensus 349 v~~a 352 (418)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 7543
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=0.00023 Score=59.98 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCccCCeEEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecC
Q 014815 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234 (418)
Q Consensus 155 ~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~ 234 (418)
-|..|-..|++....|+.++|.++.. ..|+|.||..-++.+.+...|+.||+ |....++.+ ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 35566667899999999999999998 99999999999999999999999999 777777776 677888889999999
Q ss_pred HHHHHHHHHHhcCC
Q 014815 235 HKCAEYSRQKMTNP 248 (418)
Q Consensus 235 ~~~a~~a~~~~~~~ 248 (418)
...+..|.......
T Consensus 82 k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 82 KPNARKAARRCREG 95 (275)
T ss_pred chhHHHHHHHhccC
Confidence 99999998888543
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.66 E-value=0.00034 Score=51.32 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=53.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEE-eccCC------CCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV-VPPAK------PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-A 346 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~~------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~ 346 (418)
.+.|.|-+.|.. ....|.+.|++||.|.... +.++. .......+..|+|.+..+|.+||. .||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 367999999888 6677889999999998775 11110 011113689999999999999998 599999885 5
Q ss_pred EEEEeccC
Q 014815 347 LECSLAKP 354 (418)
Q Consensus 347 l~v~~a~~ 354 (418)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777743
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.52 E-value=0.00082 Score=56.79 Aligned_cols=105 Identities=23% Similarity=0.331 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCc
Q 014815 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEK 316 (418)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~ 316 (418)
-|..|...|.+. ...++.+.+.++.. ..|+|.||..-++.+.|.+.|+.||.|....+..|..+..
T Consensus 6 ~ae~ak~eLd~~--~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~- 71 (275)
T KOG0115|consen 6 LAEIAKRELDGR--FPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP- 71 (275)
T ss_pred HHHHHHHhcCCC--CCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc-
Confidence 455556666654 44567777777654 5799999999999999999999999999877776665544
Q ss_pred CcEEEEEeCCHHHHHHHHHHhC----CceeCCeEEEEEeccCC
Q 014815 317 NRIGFVHFAERSSAMKALKNTE----KYELDGQALECSLAKPQ 355 (418)
Q Consensus 317 ~g~afV~F~~~~~A~~A~~~l~----g~~i~g~~l~v~~a~~~ 355 (418)
.+-++|.|...-.|.+|+..++ +.+..++++-|......
T Consensus 72 t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 72 TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhcc
Confidence 3789999999999999999875 23455677777665443
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.50 E-value=0.00052 Score=53.45 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=46.6
Q ss_pred HHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
.+|.+.|..||.|.=|+++.+ .-+|+|.+.++|.+|+. |+|..|+|+.|+|++..+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 367888999999988888763 57999999999999998 8999999999999998764
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.00012 Score=66.09 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeC---CCC--CC--------CcceEEEEEcCHHHHHHHHHHhCCC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG---KDS--SE--------NKGFAFVTFRNVELASKAIDKLNNT 166 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~--g~--------~~g~afV~F~~~e~A~~A~~~l~~~ 166 (418)
.+++|.+.|||.+-.-+-|.++|..||.|..|+|+.- ..+ +. .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999888999999999999999999876 222 22 2457999999999999999877654
Q ss_pred c
Q 014815 167 E 167 (418)
Q Consensus 167 ~ 167 (418)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.41 E-value=0.00066 Score=49.82 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=51.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCC-------CCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-------DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
.+.|.|-+.|+. ....|..+|++||.|.+..-.... ..........|+|.++.+|.+|| ..||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 578999999998 455688899999999877511000 00112558999999999999999 589999988644
Q ss_pred -Eecccc
Q 014815 174 -RCSTSQ 179 (418)
Q Consensus 174 -~v~~~~ 179 (418)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 455553
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.40 E-value=0.00071 Score=52.71 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=53.0
Q ss_pred CCCCCEEEEeCCCCC-----CCH----HHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 98 PPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
-|+..||.|.=+.+. .-. .+|.+.|..||.|.-|+++.+ .-+|+|.+-.+|.+|+ .++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE
Confidence 344567777655511 222 367788999999998988754 5899999999999999 5999999
Q ss_pred CCeEEEeccccc
Q 014815 169 KGKKIRCSTSQA 180 (418)
Q Consensus 169 ~g~~i~v~~~~~ 180 (418)
.|+.|+|....+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987654
No 173
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00087 Score=62.34 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=59.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~ 162 (418)
+.+|||||+||--++..+|..+|. -||-|..+-|-.|+.-+.++|-|=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 568999999999999999999998 699999999999977789999999999999999999964
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.30 E-value=0.00073 Score=58.04 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=52.3
Q ss_pred HHHHHHHHhccccEEEEEeccCCCCCCcC-cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKN-RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 289 ~~~L~~~F~~~G~v~~v~i~~~~~~~~~~-g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+.+++.-+.+||.|..|.|........-. --.||+|...++|.+|+-.|||+.|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45678899999999998887664222111 247999999999999999999999999999887654
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.28 E-value=0.00012 Score=61.78 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=52.3
Q ss_pred HHHHHHHh-ccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 290 DQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 290 ~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
++|...|+ +||.|..+.|..+..... +|-++|.|...++|++|+..||+..|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55556666 899999987766543333 6889999999999999999999999999999999874
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.25 E-value=0.0012 Score=62.34 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHh-ccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQA 346 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i---~g~~ 346 (418)
....++.|+|.||-.-+|.-+|+.++. ..|.|....|-+- +..|||.|.+.++|...+.+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445578999999999999999999998 5666666533221 36899999999999999999999876 4699
Q ss_pred EEEEeccCCC
Q 014815 347 LECSLAKPQA 356 (418)
Q Consensus 347 l~v~~a~~~~ 356 (418)
|.+.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9999987543
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00071 Score=63.78 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=63.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc---CCeEEEe
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIRC 175 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~~i~v 175 (418)
.+..|+|.||-.-.|..+|+.++. .+|.|...+|-+- +..|||.|.+.++|...+.+|||..| +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 467899999999999999999998 6778887754332 66799999999999999999999998 5788888
Q ss_pred ccccc
Q 014815 176 STSQA 180 (418)
Q Consensus 176 ~~~~~ 180 (418)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 87754
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.12 E-value=0.00023 Score=60.16 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=52.0
Q ss_pred HHHHHHHh-ccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 116 HDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 116 ~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++|...|. +||+|..++|..+.. -.-.|.+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 899999998776543 3458899999999999999999999999999999887654
No 179
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.89 E-value=0.002 Score=57.77 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=62.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCC---CcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
..|-|.||.+.+|.+++..+|...|.|..+.|+...... .....|||.|.+...+..|.. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999999998754322 123589999999999988876 6777777887777655
Q ss_pred c
Q 014815 353 K 353 (418)
Q Consensus 353 ~ 353 (418)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.84 E-value=0.009 Score=41.48 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.+..+|. .|..+-..||.++|++||.| .|..+.+ .-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3566676 99999999999999999986 4555554 379999999999999998875
No 181
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.82 E-value=0.0039 Score=53.72 Aligned_cols=64 Identities=30% Similarity=0.420 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCeeEEEEeeCCCCCCC-cceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 115 EHDLRDFCQSIGEVTEVRIMKGKDSSEN-KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 115 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~-~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
+.++++.+.+||.|..|.|...+..--. .--.||+|...++|.+|+-.|||..|.||.++..+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4567889999999999999887432211 224899999999999999999999999999987554
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.52 E-value=0.0076 Score=49.78 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=51.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc-cccE---EEEE--eccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC-----
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEH-HGRI---TKVV--VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG----- 344 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~--i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g----- 344 (418)
.+|.|++||+.+|++++...++. ++.- ..+. ..........-.-|||.|.+.+++..-+..++|..|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 68999999999999999997777 5554 3333 22111111112359999999999999999999977642
Q ss_pred eEEEEEeccC
Q 014815 345 QALECSLAKP 354 (418)
Q Consensus 345 ~~l~v~~a~~ 354 (418)
.+..|.+|--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 4567777754
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.41 E-value=0.022 Score=43.82 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=56.7
Q ss_pred ccccEEEEcCCCCCC----CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRNV----TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~----t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
++-.+|.|+=|..++ +-..|...++.||.|.+|.+.- +..|.|.|.+..+|-+|+.+++. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344788887666554 3344556678899999998754 35799999999999999999876 67789999
Q ss_pred EEeccC
Q 014815 349 CSLAKP 354 (418)
Q Consensus 349 v~~a~~ 354 (418)
++|-.+
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 888643
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.39 E-value=0.02 Score=39.80 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=40.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCC
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~ 165 (418)
...+|. .|..+...+|.++|+.||.|. |..+-+ ..|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344555 999999999999999999985 444433 3799999999999999987753
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.31 E-value=0.0028 Score=57.33 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeccC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY-ELDGQALECSLAKP 354 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-~i~g~~l~v~~a~~ 354 (418)
..||++||.+.++..+|..+|...-.-.+-.++.. .||+||.+.+...|.+|++.++|. .+.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46999999999999999999976411111111111 389999999999999999999974 47799999998877
Q ss_pred CCCC
Q 014815 355 QADQ 358 (418)
Q Consensus 355 ~~~~ 358 (418)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 6554
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.24 E-value=0.026 Score=37.20 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc---ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHH---GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 337 (418)
..|+|+++ ..++.++|+.+|..| ....+|..+.|. -|=|-|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 57999998 558899999999998 124577777764 5789999999999999865
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.22 E-value=0.027 Score=53.18 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=57.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc--cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECS 350 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v~ 350 (418)
.+.|.|+-||..+-.++|+.+|.. |-.+.+|.+..+. --||+|.+..+|+.|...|. -++|.|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 377888999999999999999975 7778888886653 36999999999999999876 356778877655
Q ss_pred ec
Q 014815 351 LA 352 (418)
Q Consensus 351 ~a 352 (418)
+.
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
Confidence 43
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.19 E-value=0.039 Score=36.34 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=43.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcc---CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSI---GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l 163 (418)
..|+|+|+. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999984 48888999999999 134577777663 5999999999999999754
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.19 E-value=0.0035 Score=51.74 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cCCe---eEEEEeeCCCC-C-CCcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQS-IGEV---TEVRIMKGKDS-S-ENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~-g-~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
....|.|++||+.+|++++.+.+.. ++.. ..+.-...... . ....-|||.|.+.+++......++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4578999999999999999997777 6655 33332222111 1 123359999999999999999999988743
No 190
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.15 E-value=0.007 Score=60.25 Aligned_cols=77 Identities=13% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC--eEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v 175 (418)
....+.+|+++|+.++....|...|..||.|..|.+-.. ..||||.|.+...|..|+..|.+..|.+ +.|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 345688999999999999999999999999998877543 5599999999999999999999999975 77888
Q ss_pred ccccc
Q 014815 176 STSQA 180 (418)
Q Consensus 176 ~~~~~ 180 (418)
.++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 87754
No 191
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.044 Score=52.06 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhcc----CCeeEEEEeeCCC----------CCC----------------------
Q 014815 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKGKD----------SSE---------------------- 141 (418)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g~---------------------- 141 (418)
...++|-|.|+.|+ +...+|.-+|+.| |.|.+|.|+.... +|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35689999999998 8999999999988 6899999865311 111
Q ss_pred ---------------CcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 142 ---------------NKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 142 ---------------~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
..-||.|+|.+.+.|....+.++|..+..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 12378999999999999999999998854
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.099 Score=45.64 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=59.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEecc
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~l~v~~a~ 353 (418)
...|.|-+.|+. .-.-|..+|+.||.|++.....+ -.+-.|.|.+.-+|++||.. ||+.|+|. .|=|..|.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 467888888776 44568889999999988776522 25899999999999999984 89999874 55677776
Q ss_pred CCCCCCC
Q 014815 354 PQADQKS 360 (418)
Q Consensus 354 ~~~~~~~ 360 (418)
.+....+
T Consensus 269 Dksvi~~ 275 (350)
T KOG4285|consen 269 DKSVING 275 (350)
T ss_pred CHHHhcc
Confidence 6554433
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.94 E-value=0.028 Score=46.57 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=47.0
Q ss_pred CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeccCCC
Q 014815 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQA 356 (418)
Q Consensus 288 t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v~~a~~~~ 356 (418)
....|+.+|..|+.+..+..++.- +-..|.|.+.++|.+|...|+ +..|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988877776643 568999999999999999999 999999999999996544
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.88 E-value=0.05 Score=41.95 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 99 PHGSEVYIGGIPHDA----SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
++=.||.|+=|..++ .-..|-..++.||+|.+|.+.- +..|.|.|.+..+|.+|+.+.+. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344678887766654 2334556778999999999864 44799999999999999987765 55677777
Q ss_pred ecccc
Q 014815 175 CSTSQ 179 (418)
Q Consensus 175 v~~~~ 179 (418)
+.+-+
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 76543
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.75 E-value=0.005 Score=54.56 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhccCCeeEEEEeeCCC--CC-CCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 100 HGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKD--SS-ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~--~g-~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
...-+||-+|+..+-.+.+. .+|.+||.|..|.+.++.. .+ ..-..+||+|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34568899999886655544 5899999999999888752 11 112248999999999999999999999999998
Q ss_pred Eeccccccc
Q 014815 174 RCSTSQAKY 182 (418)
Q Consensus 174 ~v~~~~~~~ 182 (418)
+..+...+.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 887766543
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.59 E-value=0.17 Score=38.01 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=50.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
..+.+...|+.++..+|..+.+.+- .|..++|+++... ++-.+.++|.+..+|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555556666777777766664 4778999886643 34678999999999999999999999875
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.21 E-value=0.2 Score=37.68 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=49.3
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 101 GSEVYIGGIPHD-ASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 101 ~~~l~V~nLp~~-~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
+++|.|--+|+. ++.+.|..+.+.+- .|..++|+++.. .++-.+.++|.+..+|......+||..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555555555 55666766666653 577899988743 256678999999999999999999998753
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.04 E-value=0.12 Score=34.67 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 285 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
..++-++|+..+..|+- ..| ..++ .|| ||.|.+..+|+++....+|..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35688999999999964 333 3443 244 89999999999999999999988877764
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.03 E-value=0.0098 Score=52.76 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHhccccEEEEEeccCCC--CCC-cCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 276 KAVYVKNLPRNVTQDQL---KKLFEHHGRITKVVVPPAKP--GQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~i~~~~~--~~~-~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
.-+||-+|+..+..+.+ ...|..||.|..|.+..+.. ... .-.-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56788888877755554 36789999999999988662 111 1134899999999999999999999999999887
Q ss_pred EeccC
Q 014815 350 SLAKP 354 (418)
Q Consensus 350 ~~a~~ 354 (418)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77644
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.00 E-value=0.2 Score=34.76 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhcccc-----EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 285 ~~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
..++..+|..++...+. |-.|.|.. .|+||+-.. +.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888876543 66788865 489999854 6899999999999999999999875
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.92 E-value=0.021 Score=52.77 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=62.7
Q ss_pred cccEEEEcCCCCCC-CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 274 QVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 274 ~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
..+.|-+.-.|+.. +.++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34566677777765 779999999999999999986552 469999999999987765 6899999999999999
Q ss_pred cCCC
Q 014815 353 KPQA 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8743
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.88 E-value=0.032 Score=55.37 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEeccC
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSLAKP 354 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~--g~~l~v~~a~~ 354 (418)
...+.|.+...+..-|..+|+.||.|.+++.+++- ..|.|.|.+.+.|..|+.+|+|+.+. |-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34456666777888999999999999999998875 68999999999999999999998764 89999999987
Q ss_pred CCCCCCC
Q 014815 355 QADQKSA 361 (418)
Q Consensus 355 ~~~~~~~ 361 (418)
-.....+
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 6554433
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.77 E-value=0.021 Score=52.83 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCEEEEeCCCCCC-CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPHDA-SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
+.+.|-+.-+|+.. +-.+|..+|.+||.|..|.+-.. .--|.|+|.+..+|-.|. ..++..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34566677777774 66789999999999999987543 336999999999998888 58999999999999998
Q ss_pred cccc
Q 014815 179 QAKY 182 (418)
Q Consensus 179 ~~~~ 182 (418)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7643
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.61 E-value=0.093 Score=43.51 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=46.7
Q ss_pred CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC--CCccCCeEEEecccc
Q 014815 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCSTSQ 179 (418)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~v~~~~ 179 (418)
....|+++|..|+.+..+.+++. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.+++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999998888775 4469999999999999999999 899999999998874
No 205
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.59 E-value=0.58 Score=47.27 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHhccccE-----EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 285 RNVTQDQLKKLFEHHGRI-----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 285 ~~~t~~~L~~~F~~~G~v-----~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
..++...|..++..-+.| -.|.|.. .|.||+-. ...|...+..|++..+.|++|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCCC
Confidence 567888887777665543 3466654 48999984 46788999999999999999999998644
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.36 E-value=0.14 Score=47.27 Aligned_cols=71 Identities=23% Similarity=0.459 Sum_probs=60.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
+..++.|.|-.+|..+|..+|..|+..|- .|..++|+++.. .++-.+.|+|.+.++|....+.+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44489999999999999999999998764 689999999643 234468899999999999999999998764
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.31 E-value=0.048 Score=52.75 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
...+..++||+||...+..+-++.+...||.|.++.... |||..|..+..+.+|+..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344568999999999999999999999999998877644 99999999999999999999999999888777
Q ss_pred ec
Q 014815 351 LA 352 (418)
Q Consensus 351 ~a 352 (418)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 64
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.90 E-value=0.15 Score=47.09 Aligned_cols=68 Identities=9% Similarity=0.175 Sum_probs=58.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
+..|+|-.+|..+|..||..|+..|- .|..|+|+++.... +-.+.|.|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998764 48899999955433 3568999999999999999999999875
No 209
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.27 E-value=0.28 Score=48.65 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHhC
Q 014815 152 NVELASKAIDKLN 164 (418)
Q Consensus 152 ~~e~A~~A~~~l~ 164 (418)
..-.+.+|++++=
T Consensus 208 ~~~eiIrClka~m 220 (1102)
T KOG1924|consen 208 NLQEIIRCLKAFM 220 (1102)
T ss_pred HHHHHHHHHHHHh
Confidence 3445566665543
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.18 E-value=0.17 Score=47.99 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhc--cCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC--ccCCeEEEec
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRCS 176 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~--~~~g~~i~v~ 176 (418)
.+.|.|+-||..+..++|+.+|+. |-++++|.+-.+. -=||+|.+..+|+.|.+.|... .|.|+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456788999999999999999976 7789999886653 3699999999999999877643 3677766543
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=0.39 Score=42.05 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeE-EEecccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK-IRCSTSQ 179 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-i~v~~~~ 179 (418)
..-|-|-++|+...- -|..+|.+||.|.....- +.-.+-+|.|.+.-+|.+|| ..+|..|.|.. |=|..|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 467888899887554 577899999999776543 23458999999999999999 57999998754 3455544
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.68 E-value=0.078 Score=51.40 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
++..+|||+||...+..+-++.++..||.|.+++... |+|..|.....+.+|+..++...++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999998887654 899999999999999999998889888777654
No 213
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=92.12 E-value=1 Score=46.10 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred CcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 142 NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 142 ~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
-+||-||+=.-..++..||+.+.+....
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 4899999999999999999888776655
No 214
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.86 E-value=0.17 Score=52.76 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=10.6
Q ss_pred CCHHHHHHHHhccC
Q 014815 113 ASEHDLRDFCQSIG 126 (418)
Q Consensus 113 ~t~~~l~~~f~~~G 126 (418)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36688888888774
No 215
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.84 E-value=0.073 Score=55.29 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.6
Q ss_pred HHHHHhcc
Q 014815 118 LRDFCQSI 125 (418)
Q Consensus 118 l~~~f~~~ 125 (418)
|.++|+..
T Consensus 741 La~~Fk~r 748 (784)
T PF04931_consen 741 LAAIFKER 748 (784)
T ss_pred HHHHHHHH
Confidence 34455443
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.53 E-value=0.11 Score=51.72 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=58.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc--CCeEEEecccc
Q 014815 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQ 179 (418)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~--~g~~i~v~~~~ 179 (418)
..+.|.+-..+-..|..+|.+||.|.+++.+++. ..|.|.|.+.+.|..|+++++|..+ -|-+.+|.++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455556667788899999999999999998874 3799999999999999999999875 57778887664
No 217
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.24 E-value=0.088 Score=54.71 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=4.2
Q ss_pred CCHHHHHHH
Q 014815 113 ASEHDLRDF 121 (418)
Q Consensus 113 ~t~~~l~~~ 121 (418)
++++++..+
T Consensus 729 mdDe~m~~l 737 (784)
T PF04931_consen 729 MDDEQMMAL 737 (784)
T ss_pred cCHHHHHHH
Confidence 445544443
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=1.2 Score=42.82 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=61.5
Q ss_pred cccEEEEcCCCCC-CCHHHHHHHHhcc----ccEEEEEeccCCCC-----------C-----------------------
Q 014815 274 QVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPG-----------Q----------------------- 314 (418)
Q Consensus 274 ~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~~-----------~----------------------- 314 (418)
.+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|.+...| .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3589999999987 6889999988865 47999998775422 1
Q ss_pred -------------CcCcEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 014815 315 -------------EKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECSLA 352 (418)
Q Consensus 315 -------------~~~g~afV~F~~~~~A~~A~~~l~g~~i~g--~~l~v~~a 352 (418)
..--||.|+|.+.+.|......+.|..|.. ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 111379999999999999999999999874 55555554
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.30 E-value=1.7 Score=29.24 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 112 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
.++-++|+..+..|+-. +|..++ .| -||.|.+..+|.+|....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999743 333442 23 589999999999999999999887776643
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.74 E-value=1.8 Score=29.96 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhccC-----CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 112 DASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 112 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|++|+|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888888887764 3667777654 889987665 788899999999999999998754
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=0.56 Score=42.71 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHH
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~ 161 (418)
...|-|.++|.....++|...|..|+. =-.|.++-+. .||-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 357899999999988999999999964 3456665543 69999999999999994
No 222
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.06 E-value=1.2 Score=44.58 Aligned_cols=9 Identities=0% Similarity=-0.153 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 014815 407 SSTTQLACT 415 (418)
Q Consensus 407 g~g~~p~~~ 415 (418)
|++++|+++
T Consensus 593 Gg~ppPP~~ 601 (1102)
T KOG1924|consen 593 GGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCC
Confidence 444444443
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.27 E-value=0.74 Score=37.31 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q 014815 276 KAVYVKNLPRNVT-----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALEC 349 (418)
Q Consensus 276 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~l~v 349 (418)
..+++.+|+..+- ......+|..|-......+++.. ++.-|-|.+.+.|..|...++.+.|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4677778876552 23345667777666555555543 5677899999999999999999999998 9999
Q ss_pred EeccCCCCC
Q 014815 350 SLAKPQADQ 358 (418)
Q Consensus 350 ~~a~~~~~~ 358 (418)
-++.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 999876553
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.19 E-value=0.75 Score=32.85 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=41.1
Q ss_pred EEEEEcCHHHHHHHHHHhCCCc--cCCeEEEec---------------cccccccccccCCCCCCCHHHHHHHHH
Q 014815 146 AFVTFRNVELASKAIDKLNNTE--FKGKKIRCS---------------TSQAKYRLFIGNIPRNWGSEDLQKVVS 203 (418)
Q Consensus 146 afV~F~~~e~A~~A~~~l~~~~--~~g~~i~v~---------------~~~~~~~l~v~~l~~~~~~~~l~~~f~ 203 (418)
|.|+|.+..-|.+.++ +..+. +.++.+.|. ...+++++.+.|||...+++.|++.+.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999995 33332 445444442 334568899999999999988877543
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.10 E-value=2.6 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=40.9
Q ss_pred EEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCC-----CCCCccccEEEEcCCCCCCCHHHHHHHH
Q 014815 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----SSGASQVKAVYVKNLPRNVTQDQLKKLF 296 (418)
Q Consensus 228 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~F 296 (418)
|.|+|....-|...++.-.. .+.++...+.+......... -......++|.|.|||...+++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~-~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKH-PVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEE-EEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 57889998888877654332 23333333333222211111 1223345899999999999999998754
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.91 E-value=1.3 Score=38.33 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=47.7
Q ss_pred CCEEEEeCCCCC------------CCHHHHHHHHhccCCeeEEEEeeC-C----CCCCCc-----ce---------EEEE
Q 014815 101 GSEVYIGGIPHD------------ASEHDLRDFCQSIGEVTEVRIMKG-K----DSSENK-----GF---------AFVT 149 (418)
Q Consensus 101 ~~~l~V~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~~~-~----~~g~~~-----g~---------afV~ 149 (418)
.-||++.+||-. -+++-|+..|..||.|..|.|..- + -+|+.. || |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 458999999843 367789999999999998887542 1 123332 33 4577
Q ss_pred EcCHHHHHHHHHHhCCCcc
Q 014815 150 FRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 150 F~~~e~A~~A~~~l~~~~~ 168 (418)
|.....-..|+..|.|..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 7777777778877877665
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=78.01 E-value=2 Score=34.96 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCe-EEE
Q 014815 101 GSEVYIGGIPHDAS-----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KIR 174 (418)
Q Consensus 101 ~~~l~V~nLp~~~t-----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~i~ 174 (418)
.+++.+.+|+..+- ......+|.+|.+.....+++. .+..-|.|.+++.|..|...++...|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 35688888876632 2234567777877766666553 66788999999999999999999999988 888
Q ss_pred eccccccc
Q 014815 175 CSTSQAKY 182 (418)
Q Consensus 175 v~~~~~~~ 182 (418)
..++++..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 87777543
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.84 E-value=6 Score=34.95 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=61.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCC-------CCCcCcEEEEEeCCHHHHHH----HHHHhC--Cc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP-------GQEKNRIGFVHFAERSSAMK----ALKNTE--KY 340 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-------~~~~~g~afV~F~~~~~A~~----A~~~l~--g~ 340 (418)
.++.|.+.|+..+++--.+...|-+||.|.+|+++.+.. .........+.|-+.+.+.. .++.|+ ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998771 11223567899998887654 334444 34
Q ss_pred eeCCeEEEEEecc
Q 014815 341 ELDGQALECSLAK 353 (418)
Q Consensus 341 ~i~g~~l~v~~a~ 353 (418)
.+....|.|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 5778888888875
No 229
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=77.73 E-value=13 Score=30.87 Aligned_cols=15 Identities=13% Similarity=-0.101 Sum_probs=7.9
Q ss_pred CcccCCCCCCCCCCC
Q 014815 403 TTVWSSTTQLACTSW 417 (418)
Q Consensus 403 p~~~g~g~~p~~~~~ 417 (418)
++...+..+|++++|
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (182)
T PRK06958 159 GGGASRPSAPAGGGF 173 (182)
T ss_pred CCcccCcCCCCCCCc
Confidence 334444456666665
No 230
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=77.20 E-value=1.5 Score=45.94 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.4
Q ss_pred eEEEEE
Q 014815 345 QALECS 350 (418)
Q Consensus 345 ~~l~v~ 350 (418)
++|.+.
T Consensus 743 ~PL~l~ 748 (840)
T PF04147_consen 743 RPLQLQ 748 (840)
T ss_pred CCceec
Confidence 344443
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.83 E-value=13 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=35.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccE-EEEEeccCCCCCCcCcEEEEEeCCH
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAER 327 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~F~~~ 327 (418)
..-|+++||+.++...+|+..+.+.+.+ .++...-. +|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~------~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH------FGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC------CcceeEecCCc
Confidence 4569999999999999999999987653 23433221 37899999864
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.87 E-value=7.4 Score=34.41 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=49.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC-------CCCCcceEEEEEcCHHHHHHHH
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-------SSENKGFAFVTFRNVELASKAI 160 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~F~~~e~A~~A~ 160 (418)
..|.|...|+..+++-..+...|-+||+|++|.++.+.. .-+......+.|-+.+.+....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 357799999999999999999999999999999998751 1233467899999998876554
No 233
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=74.57 E-value=4.3 Score=36.50 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.6
Q ss_pred CCcccCCCcccC
Q 014815 396 GAAAFAQTTVWS 407 (418)
Q Consensus 396 ~~~~~~~p~~~g 407 (418)
|+++|+||++|-
T Consensus 380 GGggyqqp~~~~ 391 (465)
T KOG3973|consen 380 GGGGYQQPQQQQ 391 (465)
T ss_pred CCCCCcCchhhh
Confidence 356787777543
No 234
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=73.59 E-value=1.5 Score=43.53 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=10.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 320 GFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 320 afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
-||.--+.++-..|++.|-...+.|
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCC
Confidence 3444444444444444433333333
No 235
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.33 E-value=0.69 Score=42.76 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.+.|+..||...++.++.-+|..||.|..+.+.+.-.++...-.+||+-.+ .+|..+|..+.-.++.|..+++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 467888999999999999999999999999988877776656688888754 577788887777788899999988864
No 236
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=71.28 E-value=2.2 Score=42.44 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=3.7
Q ss_pred CCCCHHHHH
Q 014815 285 RNVTQDQLK 293 (418)
Q Consensus 285 ~~~t~~~L~ 293 (418)
..+|.++|.
T Consensus 554 l~vTledll 562 (822)
T KOG2141|consen 554 LSVTLEDLL 562 (822)
T ss_pred ccccHHHhh
Confidence 334444443
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.21 E-value=2.9 Score=31.81 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=26.8
Q ss_pred cEEEEcCCCCC---------CCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCH
Q 014815 276 KAVYVKNLPRN---------VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327 (418)
Q Consensus 276 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 327 (418)
-.+.|.|++.. .+.+.|++.|+.|..+. |+.+.+..+. .|+++|.|.+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh--~g~aiv~F~~~ 66 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGH--TGFAIVEFNKD 66 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEE--EEEEEEE--SS
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCC--cEEEEEEECCC
Confidence 35777788654 35688999999998764 5555555543 38999999864
No 238
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=71.13 E-value=17 Score=30.30 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=8.4
Q ss_pred CCcccCCCCCCCCCCCC
Q 014815 402 QTTVWSSTTQLACTSWE 418 (418)
Q Consensus 402 ~p~~~g~g~~p~~~~~~ 418 (418)
++.....+..|...+|.
T Consensus 153 ~~~~~~~~~~~~~~~w~ 169 (186)
T PRK07772 153 PGGGGAQASAPADDPWS 169 (186)
T ss_pred CCCCccccCCCCCCccc
Confidence 33344444455556663
No 239
>COG4371 Predicted membrane protein [Function unknown]
Probab=70.92 E-value=11 Score=32.32 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.7
Q ss_pred CCCCcccCCCc
Q 014815 394 GFGAAAFAQTT 404 (418)
Q Consensus 394 g~~~~~~~~p~ 404 (418)
+|++++|.-|-
T Consensus 82 ~Y~GGGfgfPf 92 (334)
T COG4371 82 GYSGGGFGFPF 92 (334)
T ss_pred CCCCCCcCcCe
Confidence 34444444443
No 240
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.12 E-value=5.9 Score=34.62 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEeeCCCCCCCcceEEEEEcCHH
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVE 154 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~e 154 (418)
.+-|+|+|||.++.-.+|+..+.+.+.+ .++...- .+|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 4569999999999999999999888743 3444322 3778999997754
No 241
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=69.74 E-value=9.1 Score=25.80 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
++|.+.|..+| .|..|+-+..++++.+...-||+.....+-.. -++=..|.|++|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899988 68889988888877777888898876643333 2344567888899887654
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.57 E-value=11 Score=25.54 Aligned_cols=63 Identities=10% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
++|.+.|...| +|..|.-+..+.++......||++....+...+ ++=..+.+..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46888888888 688888888877788888899998877664433 3445678888998876543
No 243
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.55 E-value=11 Score=30.22 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=29.9
Q ss_pred cEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCC
Q 014815 276 KAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAK 311 (418)
Q Consensus 276 ~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~ 311 (418)
.-|.|.|||.. .+++-|+.+.+.+|.+..+......
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 45778899987 5889999999999999988876544
No 244
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=68.30 E-value=2.8 Score=38.56 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.7
Q ss_pred CHHHHH
Q 014815 114 SEHDLR 119 (418)
Q Consensus 114 t~~~l~ 119 (418)
|.++++
T Consensus 191 T~eDF~ 196 (324)
T PF05285_consen 191 TPEDFA 196 (324)
T ss_pred CHHHHH
Confidence 444443
No 245
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=67.19 E-value=6.1 Score=39.78 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=6.9
Q ss_pred EEeCCCCCCCHHHHHH
Q 014815 105 YIGGIPHDASEHDLRD 120 (418)
Q Consensus 105 ~V~nLp~~~t~~~l~~ 120 (418)
-+..+|--++-++-..
T Consensus 959 ~~~d~pvFAsaeey~h 974 (988)
T KOG2038|consen 959 GLNDSPVFASAEEYAH 974 (988)
T ss_pred ccccchhhhhHHHHHH
Confidence 3444554444444333
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.69 E-value=0.85 Score=43.54 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
.++||++|+++.++-.+|..+++.+--+..+-+.....-.....+.+|.|+---....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4789999999999999999999998666666554443334556789999998888888888888776543
No 247
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.60 E-value=4 Score=35.46 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=27.1
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHHhccccEEEEEeccC
Q 014815 276 KAVYVKNLPRN------------VTQDQLKKLFEHHGRITKVVVPPA 310 (418)
Q Consensus 276 ~~l~V~nLp~~------------~t~~~L~~~F~~~G~v~~v~i~~~ 310 (418)
.+|++.+||.. -++..|+..|..||.|..|.|+.-
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 56777777643 356789999999999999988753
No 248
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=62.69 E-value=14 Score=34.08 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=44.1
Q ss_pred EEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccccccccccCCCCCCCHHHHHHHHH
Q 014815 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203 (418)
Q Consensus 146 afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 203 (418)
|||+|.+..+|..|++.+.... .+.+++..+.+...+.=.||........++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998655443 3566888898888888888877777776766544
No 249
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.43 E-value=37 Score=24.12 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=43.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014815 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~ 162 (418)
.-|+--++..++..+|+..++. || .|.+|+.+..+. ..--|||+|.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4566667889999999999987 66 577887776542 234699999998888877643
No 250
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.01 E-value=35 Score=24.21 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh
Q 014815 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (418)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 337 (418)
-|+--++...+..+|++.++. || .|.+|.......+. --|||++.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHhh
Confidence 444446688999999999987 56 47777776655332 36999999988888776543
No 251
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.62 E-value=11 Score=28.77 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=28.8
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHH
Q 014815 103 EVYIGGIPHD---------ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158 (418)
Q Consensus 103 ~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~ 158 (418)
++.|-|+|.. .+-+.|++.|..|.++. ++.+.+. ..+.|++.|+|.+.-..-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHH
Confidence 4566777543 35578999999998875 5555543 2468899999987654433
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=60.87 E-value=79 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcc----CCeeEEEEeeC
Q 014815 100 HGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKG 136 (418)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~ 136 (418)
...+|-|-|+.|+ +...+|...|+.| |.|..|.|+..
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 4578999999998 8889999999887 67888888764
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=60.75 E-value=22 Score=24.02 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 290 DQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 290 ~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
+.|.+-|...| .+..|+-+..++++.+-..-||+.....+-.. -|+=..++|++|.|......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 47888888888877666677888766543333 34555789999999876543
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.52 E-value=43 Score=23.34 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=41.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
.-|+-.++...+..+|+..++. || .|..|....-+.+. --|||++..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHh
Confidence 3555567789999999999887 55 46777766554322 3699999988888776554
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.32 E-value=1.4 Score=42.16 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=51.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 346 (418)
.++||++|+++.++-.+|..+|..+.-+..+-+.....-..-..+++|+|.---...-|+.+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 478999999999999999999999876666665443322222346889998666666666667765554433
No 256
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.62 E-value=91 Score=29.77 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=6.6
Q ss_pred HHHHHHhhCC
Q 014815 198 LQKVVSEVGP 207 (418)
Q Consensus 198 l~~~f~~~g~ 207 (418)
|-.+|.-||+
T Consensus 247 lG~I~EiFGp 256 (483)
T KOG2236|consen 247 LGQIFEIFGP 256 (483)
T ss_pred chhhhhhhcc
Confidence 5566777776
No 257
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=59.61 E-value=4.8 Score=40.70 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHhc
Q 014815 234 NHKCAEYSRQKMT 246 (418)
Q Consensus 234 ~~~~a~~a~~~~~ 246 (418)
+..++..|+.++-
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 4444455555544
No 258
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.50 E-value=21 Score=33.03 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=45.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcccc-EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
.+.|-|.++|...-.+||...|..|+. =..|..+.+ -.||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 478999999999999999999999975 234555554 3899999999999999873
No 259
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.20 E-value=49 Score=23.07 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=42.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHH
Q 014815 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~ 162 (418)
.-|+-.++..++..+|+..++. || .|..|+.+.-+. ..--|||++..-..|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4677778899999999999987 56 577777666532 234599999988888776543
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.28 E-value=12 Score=34.57 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=48.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCC--CCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
-..|.|++||+..++.+|.+....|-. |....+...... ..-.+.|||.|..+++........+|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467999999999999999988877642 333333321100 12256799999999998888887887764
No 261
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=58.03 E-value=14 Score=30.11 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=38.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC-CCCcceEEEEEcCHHHHHHHHHH
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~e~A~~A~~~ 162 (418)
+++|.. |.+...++|..+-+ |.+..|.+.+.... ...+|..||+|.+.+.|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 566666 33333344444444 78888877665331 25689999999999999998864
No 262
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=57.12 E-value=34 Score=23.15 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHhcccc-EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 290 DQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 290 ~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
++|++-|...|. |..|.-+..+.+..+-..-||++....+...+ ++=..+++..|+|...+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 467778888774 77787777775555556778888776553333 4445789999999877654
No 263
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=55.93 E-value=7.2 Score=39.44 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=5.8
Q ss_pred cCHHHHHHHHHHhc
Q 014815 233 HNHKCAEYSRQKMT 246 (418)
Q Consensus 233 ~~~~~a~~a~~~~~ 246 (418)
...-+|.-++..+.
T Consensus 396 ~~~lSA~D~v~al~ 409 (622)
T PF02724_consen 396 RGKLSASDVVYALT 409 (622)
T ss_pred CCceeHHHHHHHHH
Confidence 33444444444443
No 264
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=54.38 E-value=28 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=10.9
Q ss_pred EEEeCCCCCCCHHHHHHHHhc
Q 014815 104 VYIGGIPHDASEHDLRDFCQS 124 (418)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~ 124 (418)
-+.-.||.....-+|..+..+
T Consensus 1444 ev~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1444 EVELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEEecCCCcchHHHHHHHH
Confidence 344456666555555554443
No 265
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.17 E-value=18 Score=33.37 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=46.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcccc-EEEEEeccCCCCCC--cCcEEEEEeCCHHHHHHHHHHhCCcee
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYEL 342 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~A~~~l~g~~i 342 (418)
..+.|++||+..+..+|.+-..+|-. |....+.....+.. ..+.|||.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 68999999999999999988887643 44444443222211 135789999999986666666666544
No 266
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.63 E-value=12 Score=31.91 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRI 133 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i 133 (418)
.....+||+-|||..+|++-|..+.+++|.+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 456789999999999999999999999996655443
No 267
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=51.88 E-value=74 Score=30.70 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=17.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSI 125 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~ 125 (418)
-||.+. |..+++++-..|+..+
T Consensus 338 pIW~R~-p~eV~EdEYt~FYkSl 359 (785)
T KOG0020|consen 338 PIWLRK-PKEVTEDEYTKFYKSL 359 (785)
T ss_pred hhhccC-chhcchHHHHHHHHhh
Confidence 366653 7789999999998876
No 268
>COG4907 Predicted membrane protein [Function unknown]
Probab=47.49 E-value=41 Score=31.93 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHhcccc-----EEEEEecc
Q 014815 289 QDQLKKLFEHHGR-----ITKVVVPP 309 (418)
Q Consensus 289 ~~~L~~~F~~~G~-----v~~v~i~~ 309 (418)
++..+.+++.|.. +.+|++-.
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~ 513 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWE 513 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHh
Confidence 3555666665543 44555543
No 269
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=45.43 E-value=8.4 Score=42.52 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.8
Q ss_pred eeEEEEee
Q 014815 128 VTEVRIMK 135 (418)
Q Consensus 128 v~~v~i~~ 135 (418)
+..|+|++
T Consensus 286 ~~~v~iic 293 (2849)
T PTZ00415 286 LIKVKIIC 293 (2849)
T ss_pred cceeEEEc
Confidence 44455544
No 270
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.42 E-value=25 Score=32.37 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 320 afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
|||+|.+..+|..|++.+... ..+.+.+..|.++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc
Confidence 799999999999999975542 346668888766554
No 271
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.46 E-value=55 Score=21.64 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=15.7
Q ss_pred HHHHHHHhccccEEEEEec
Q 014815 290 DQLKKLFEHHGRITKVVVP 308 (418)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~ 308 (418)
.+||++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998766653
No 272
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=44.38 E-value=10 Score=35.12 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCEEEEeCCCCCCCHH--------HHHHHHhc--cCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHH
Q 014815 101 GSEVYIGGIPHDASEH--------DLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~ 161 (418)
.+.+|+.+.....+.. ++...|.. .+++..++..++.....++|..|++|+....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567888887665544 89999988 6788888888887667889999999999999999883
No 273
>COG4371 Predicted membrane protein [Function unknown]
Probab=43.33 E-value=53 Score=28.42 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.6
Q ss_pred CceeCC
Q 014815 339 KYELDG 344 (418)
Q Consensus 339 g~~i~g 344 (418)
|-.|.|
T Consensus 50 GGriGG 55 (334)
T COG4371 50 GGRIGG 55 (334)
T ss_pred CCCccC
Confidence 334444
No 274
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=43.21 E-value=35 Score=27.88 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=38.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCC-CCcCcEEEEEeCCHHHHHHHHHH
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
+++|.. +.+...++|.++-+ |.+..|...+..++ ...+|-.||+|.+.+.|.+.++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 33444455555555 78888887766554 12358899999999999987764
No 275
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=38 Score=30.36 Aligned_cols=11 Identities=0% Similarity=0.250 Sum_probs=4.2
Q ss_pred ccCCCcccCCC
Q 014815 399 AFAQTTVWSST 409 (418)
Q Consensus 399 ~~~~p~~~g~g 409 (418)
+|..-+.||..
T Consensus 92 GyN~~~~~g~n 102 (362)
T KOG3875|consen 92 GYNRFGPYGTN 102 (362)
T ss_pred ccccccccccC
Confidence 34333334433
No 276
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=42.58 E-value=1e+02 Score=23.15 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc--cCCeEEEeccccccccccc
Q 014815 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRCSTSQAKYRLFI 186 (418)
Q Consensus 109 Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~i~v~~~~~~~~l~v 186 (418)
||+-+. .|.++|+.-|+|.+|..+..-.+ ..|+-.++|.. ++|. |++-..+....++|
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 666554 48899999999999876643111 12333445543 4454 77777666666776
Q ss_pred cCCC---------CCCCHHHHHHHHHhhCC--CeeEEEEeccCCCCCCCccEEEEEecC
Q 014815 187 GNIP---------RNWGSEDLQKVVSEVGP--GVTGVELVKDMKNSSNNRGFAFIEYHN 234 (418)
Q Consensus 187 ~~l~---------~~~~~~~l~~~f~~~g~--~i~~~~~~~~~~~~~~~~g~~fv~f~~ 234 (418)
.+-| ..++-.+++++|..--. +|..-.+.++ .-...+...||..|..
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~ 128 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNA 128 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEecc
Confidence 6544 46788899999986421 1333333444 2222334455555543
No 277
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=42.28 E-value=11 Score=39.27 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.6
Q ss_pred CEEEEeCCCC
Q 014815 102 SEVYIGGIPH 111 (418)
Q Consensus 102 ~~l~V~nLp~ 111 (418)
+-+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4456655554
No 278
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.55 E-value=4.9 Score=37.43 Aligned_cols=78 Identities=6% Similarity=-0.109 Sum_probs=60.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+.+.|+..||...++.++.-+|..||.|..+.+.+.-+.|...-.+||.-.+ ..|..+|..+.-..+.|..++|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3567888999999999999999999999988888777777777788887654 44566666666666777777776554
No 279
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.48 E-value=88 Score=29.23 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=56.1
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhcc----ccEEEEEeccCCCCC---------------------------------
Q 014815 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHH----GRITKVVVPPAKPGQ--------------------------------- 314 (418)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~~~--------------------------------- 314 (418)
..+.+|-|-||.|+ +...+|.-+|+.| |.|..|.|.+...+.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 44589999999987 6888999888865 457778776533110
Q ss_pred --------------------------------CcCcEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 014815 315 --------------------------------EKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECSLA 352 (418)
Q Consensus 315 --------------------------------~~~g~afV~F~~~~~A~~A~~~l~g~~i~g--~~l~v~~a 352 (418)
..--||.|+|.+...+........|..+.. ..+.+.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 001268899999999988888888877653 44555544
No 280
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=40.32 E-value=18 Score=34.30 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=7.0
Q ss_pred ccCCeEEEecc
Q 014815 167 EFKGKKIRCST 177 (418)
Q Consensus 167 ~~~g~~i~v~~ 177 (418)
.+.||+|.|..
T Consensus 425 SMrGRpItvAa 435 (620)
T COG4547 425 SMRGRPITVAA 435 (620)
T ss_pred CcCCcceehhH
Confidence 45677777643
No 281
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=38.58 E-value=16 Score=38.31 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.7
Q ss_pred cceEEEEEcC
Q 014815 143 KGFAFVTFRN 152 (418)
Q Consensus 143 ~g~afV~F~~ 152 (418)
+.+-.+.|--
T Consensus 931 ~k~y~ltFi~ 940 (1096)
T TIGR00927 931 RKFFVITFLG 940 (1096)
T ss_pred cceeeehHHH
Confidence 3344455543
No 282
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=37.53 E-value=34 Score=36.89 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.8
Q ss_pred HHHHHhccc
Q 014815 292 LKKLFEHHG 300 (418)
Q Consensus 292 L~~~F~~~G 300 (418)
+..+|.-||
T Consensus 1542 v~~VF~vYG 1550 (1640)
T KOG0262|consen 1542 VNNVFKVYG 1550 (1640)
T ss_pred HHHhhhhee
Confidence 334444444
No 283
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=36.77 E-value=28 Score=33.47 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=7.8
Q ss_pred EEEEEcCHHHHHHHH
Q 014815 146 AFVTFRNVELASKAI 160 (418)
Q Consensus 146 afV~F~~~e~A~~A~ 160 (418)
-.=.|...+.|-+..
T Consensus 212 ~HDrF~e~eQaPKSr 226 (694)
T KOG4264|consen 212 KHDRFDEKEQAPKSR 226 (694)
T ss_pred ccccchhhhcCchHH
Confidence 334566666555443
No 284
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.69 E-value=56 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=21.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 318 RIGFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 318 g~afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
.+.+|.|.|..+|.+|-+.|....|..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 368999999999999998887554433
No 285
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.29 E-value=18 Score=33.61 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCC--------HHHHHHHHhc--cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 276 KAVYVKNLPRNVT--------QDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 276 ~~l~V~nLp~~~t--------~~~L~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
+.+|+.+.+...+ .+++...|.+ .+.+..|+..++.....++|..|++|.....|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4566666655443 4599999999 6778888888887666668899999999999999874
No 286
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.42 E-value=31 Score=29.55 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (418)
..+||+-|||...|++-|..+.+.+|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 47999999999999999999999998655443
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.32 E-value=1.5e+02 Score=20.14 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=36.7
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc-ccccccCCCCCCCHHHHHHHHHhhCC
Q 014815 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK-YRLFIGNIPRNWGSEDLQKVVSEVGP 207 (418)
Q Consensus 144 g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~-~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (418)
.+.+|.|.+..+|.+|-+.|...-+..+.+.+-..-.. +.+.+. ++ ....+.+..++...+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 36899999999999999988877665555543222111 111111 11 1344556666666653
No 288
>PRK11901 hypothetical protein; Reviewed
Probab=33.89 E-value=1.5e+02 Score=27.01 Aligned_cols=66 Identities=12% Similarity=0.264 Sum_probs=44.0
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEE--EEcCHHHHHHHHHHhCCC
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFV--TFRNVELASKAIDKLNNT 166 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV--~F~~~e~A~~A~~~l~~~ 166 (418)
..+...-+|-|-.+ ..++.|..|..+++ +..++++.....|+.. |..| .|.+.++|..|+..|...
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34555566666664 45788888888886 4556666654444432 4333 689999999999887654
No 289
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.23 E-value=1.1e+02 Score=21.67 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 301 ~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
.|.+|-.+.+- +||-||+=.+..++..|++.+.+
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhcccc
Confidence 45666665543 69999999999999999887665
No 290
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=29.89 E-value=67 Score=32.65 Aligned_cols=14 Identities=0% Similarity=0.142 Sum_probs=10.8
Q ss_pred CCHHHHHHHHhccC
Q 014815 113 ASEHDLRDFCQSIG 126 (418)
Q Consensus 113 ~t~~~l~~~f~~~G 126 (418)
.|-++|..++.++-
T Consensus 396 k~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 396 KNYEEFLALLEKLS 409 (823)
T ss_pred cCHHHHHHHHHccC
Confidence 46788888888875
No 291
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.69 E-value=99 Score=21.85 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=24.0
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~ 166 (418)
.|.++-...+ .+||.||+=.+..++..|++.+.+.
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4666655433 5999999999999999999766543
No 292
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=27 Score=33.05 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=4.1
Q ss_pred CeEEEEEe
Q 014815 344 GQALECSL 351 (418)
Q Consensus 344 g~~l~v~~ 351 (418)
||+|+-.+
T Consensus 446 gRKLrY~V 453 (483)
T KOG2773|consen 446 GRKLRYHV 453 (483)
T ss_pred Cceeeeeh
Confidence 55555443
No 293
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.28 E-value=1e+02 Score=21.87 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=20.9
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEcC
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (418)
.|..|+|..-...|+-+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888877778999999999865
No 294
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.27 E-value=61 Score=27.79 Aligned_cols=11 Identities=0% Similarity=-0.055 Sum_probs=4.9
Q ss_pred CCHHHHHHHHh
Q 014815 113 ASEHDLRDFCQ 123 (418)
Q Consensus 113 ~t~~~l~~~f~ 123 (418)
+.+.+++..|+
T Consensus 150 ~DW~Em~~Ais 160 (217)
T PF07423_consen 150 VDWNEMLKAIS 160 (217)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
No 295
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=27.14 E-value=2.1e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=27.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeC
Q 014815 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKG 136 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~ 136 (418)
..|+-.++.+++..+|+..|+. || .|..|+.+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 4688889999999999999987 66 5777776654
No 296
>CHL00030 rpl23 ribosomal protein L23
Probab=27.10 E-value=2.3e+02 Score=20.55 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeC
Q 014815 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKG 136 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~ 136 (418)
.-|+--++.+++..+|++.++. || .|..|+.+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4677778899999999999987 66 5777776554
No 297
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=27.04 E-value=2.2e+02 Score=19.75 Aligned_cols=62 Identities=5% Similarity=0.067 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHh-------ccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 277 AVYVKNLPRNVTQDQLKKLFE-------HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~-------~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
-|..++||..+|.++|..+.. .+..|..++.....+.+ +-||+..=.|.+...++.+. .|..
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHH-cCCC
Confidence 366789999899999877654 34456666555544333 35777777788777777664 3543
No 298
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.86 E-value=55 Score=28.05 Aligned_cols=12 Identities=25% Similarity=0.086 Sum_probs=6.0
Q ss_pred HHHHHHHHHhCC
Q 014815 154 ELASKAIDKLNN 165 (418)
Q Consensus 154 e~A~~A~~~l~~ 165 (418)
....+|+...-|
T Consensus 153 ~Em~~Ais~atg 164 (217)
T PF07423_consen 153 NEMLKAISYATG 164 (217)
T ss_pred HHHHHHHHHhhC
Confidence 445555544443
No 299
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=26.62 E-value=28 Score=33.54 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=5.3
Q ss_pred EEEEEeCCH
Q 014815 319 IGFVHFAER 327 (418)
Q Consensus 319 ~afV~F~~~ 327 (418)
-|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 466666653
No 300
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=25.79 E-value=31 Score=33.22 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred cCCCCCCCCccCCCCCCCcccc-------hhhhhhhhhccchhhhhhhhhhhhhhccccccccc-cCCCCCCcccchhHH
Q 014815 17 LEKPVGSDEKVDFDEDNDPEET-------MEEEYEYEEVEEEEEEEVIEEEVEEEVEEEEEDAD-AGKSGDMQIEDEDEK 88 (418)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~e~~~~~~~~~~e~~e~~~~e~~~~~-~~~~~~~~~~~~~~~ 88 (418)
+..+-.+-.....+.+++++++ .---....-.++.+-..+.+++++++++++++++. -...-..-+..-.-.
T Consensus 87 m~~~~~~ss~~s~e~~de~ee~~mgplPP~~~~~~~~a~~es~~p~e~~ddd~e~deD~~~e~~~~~~IP~shEi~l~hg 166 (641)
T KOG0772|consen 87 MGPPRVSSSINSDEEEDEDEEDFMGPLPPKKLGSKSTALQESDSPPEGEDDDSEEDEDEDEEESIIKLIPGSHEIQLKHG 166 (641)
T ss_pred cCCCCCccccccccccccchhhhcCCCCchhccCcccccccccCCCcCccccccccccccchhchhhcCCccceEeccCC
Q ss_pred HhhhhhhcCCCCCCEEEEeCCCCCC
Q 014815 89 KKHAELLALPPHGSEVYIGGIPHDA 113 (418)
Q Consensus 89 ~~~~~~~~~~~~~~~l~V~nLp~~~ 113 (418)
.+....+...+.+.+++-+.|.+.+
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v 191 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTV 191 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceE
No 301
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.74 E-value=26 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=19.4
Q ss_pred CcEEEEEeCC-HHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 317 NRIGFVHFAE-RSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 317 ~g~afV~F~~-~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+|||||...+ ..+.--.-..|++ -++|-++.|.+..
T Consensus 8 ~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 8 KGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred CCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 6999999987 2222112233444 4667777777776
No 302
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=25.62 E-value=48 Score=33.36 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHh
Q 014815 326 ERSSAMKALKNT 337 (418)
Q Consensus 326 ~~~~A~~A~~~l 337 (418)
...+|..+|..|
T Consensus 515 ~I~eah~~L~el 526 (595)
T PF05470_consen 515 LIKEAHQCLSEL 526 (595)
T ss_pred CHHHHHHHHHHH
Confidence 345555555543
No 303
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.48 E-value=95 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEeeC
Q 014815 103 EVYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKG 136 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~ 136 (418)
..+.-.++.++|..+|+++++. || .|.+|+.+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 3666778899999999999977 66 4666665543
No 304
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.35 E-value=2.6e+02 Score=22.21 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
-|+--+....+..+|++.++. |+ .|..|..+....+. --|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~---KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL---KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc---eEEEEEECCCCcHHHHHH
Confidence 444446678899999998887 65 36677766655432 269999987776655443
No 305
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=25.11 E-value=1.1e+02 Score=19.94 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 014815 379 IGYGLAG 385 (418)
Q Consensus 379 ~~~g~~~ 385 (418)
..||...
T Consensus 23 pnyGm~q 29 (58)
T PF07469_consen 23 PNYGMSQ 29 (58)
T ss_pred CCCCccC
Confidence 3444433
No 306
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=83 Score=30.72 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=35.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014815 318 RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 318 g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 358 (418)
.++++.|.+...+.+|+..++|....+..+++..+......
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 69999999999999999999999888988888887665443
No 307
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.05 E-value=1.5e+02 Score=29.14 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred CEEEEeCCCCCC---CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 102 SEVYIGGIPHDA---SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 102 ~~l~V~nLp~~~---t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
.-=+||||+.=. .-..|.++-++||+|..+++=. .-.|.-.+.+.|..|+. -++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 444788887543 3456777778999999888632 24788889999999995 67888888886
No 308
>COG4907 Predicted membrane protein [Function unknown]
Probab=23.82 E-value=77 Score=30.23 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 014815 330 AMKALKN 336 (418)
Q Consensus 330 A~~A~~~ 336 (418)
..+|++.
T Consensus 528 Vvkam~~ 534 (595)
T COG4907 528 VVKAMRK 534 (595)
T ss_pred HHHHHHH
Confidence 3344443
No 309
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.76 E-value=1.7e+02 Score=27.09 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=10.5
Q ss_pred CHHHHHHHHhccccEE
Q 014815 288 TQDQLKKLFEHHGRIT 303 (418)
Q Consensus 288 t~~~L~~~F~~~G~v~ 303 (418)
+...|+++|...+.|.
T Consensus 217 ~~a~lKeV~p~a~ki~ 232 (377)
T KOG1308|consen 217 NSATLKEVFPNAGKIE 232 (377)
T ss_pred HHHHHHHhccchhhhh
Confidence 4566777777766554
No 310
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=23.33 E-value=61 Score=30.90 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.1
Q ss_pred EEEEeCCC
Q 014815 103 EVYIGGIP 110 (418)
Q Consensus 103 ~l~V~nLp 110 (418)
+||-+-..
T Consensus 318 kvftr~fD 325 (620)
T COG4547 318 KVFTREFD 325 (620)
T ss_pred cccchhhh
Confidence 34444333
No 311
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.28 E-value=1.3e+02 Score=21.83 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=20.1
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEcC
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~~ 152 (418)
.|+.|+|.+-...|+-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36778877765668889999999754
No 312
>PRK11901 hypothetical protein; Reviewed
Probab=22.74 E-value=1.4e+02 Score=27.30 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEE--EeCCHHHHHHHHHHhCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV--HFAERSSAMKALKNTEK 339 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV--~F~~~~~A~~A~~~l~g 339 (418)
.+|-|-. ...++.|..|...++ +..+++......+.. -|..| .|.+.++|..|+..|-.
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 4444444 356788888888775 344555554433332 34443 68899999999998753
No 313
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.22 E-value=38 Score=30.46 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=4.6
Q ss_pred CCEEEEeC
Q 014815 101 GSEVYIGG 108 (418)
Q Consensus 101 ~~~l~V~n 108 (418)
...+|..+
T Consensus 84 t~~~F~~~ 91 (285)
T PF03896_consen 84 TTILFPKP 91 (285)
T ss_pred EEEEeccc
Confidence 34566666
No 314
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=20.81 E-value=2.9e+02 Score=28.72 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=6.0
Q ss_pred EEEEEecCHHHHHHH
Q 014815 227 FAFIEYHNHKCAEYS 241 (418)
Q Consensus 227 ~~fv~f~~~~~a~~a 241 (418)
.+.+-|-+...-..|
T Consensus 633 IalLPFiDe~rLl~a 647 (931)
T KOG2044|consen 633 IALLPFIDERRLLSA 647 (931)
T ss_pred cccccccchhhHHHH
Confidence 333444444433333
No 315
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.48 E-value=2.5e+02 Score=17.97 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCH----HHHHHHHHH
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER----SSAMKALKN 336 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~----~~A~~A~~~ 336 (418)
++.|.||.-.--...|...+...-.|.++.+-... +.+-|.|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777766778899999998888888886654 6788999754 455555543
No 316
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.38 E-value=60 Score=34.04 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=8.8
Q ss_pred CCCCCCHHHHHHHHhc
Q 014815 283 LPRNVTQDQLKKLFEH 298 (418)
Q Consensus 283 Lp~~~t~~~L~~~F~~ 298 (418)
.|..+....|+.+|+.
T Consensus 447 ~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFEP 462 (1024)
T ss_pred CccccchHhhhhhccC
Confidence 3455555666666643
No 317
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.02 E-value=67 Score=21.69 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=14.3
Q ss_pred CCCEEEEeCCCCCCCHHH
Q 014815 100 HGSEVYIGGIPHDASEHD 117 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~ 117 (418)
.+++||||+||..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 578999999998765544
Done!