Query 014815
Match_columns 418
No_of_seqs 390 out of 3106
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 7.6E-46 2.6E-50 335.0 26.8 246 100-358 21-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-45 4.2E-50 335.0 27.2 251 95-355 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-37 6.1E-42 267.3 15.1 171 100-358 14-184 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 3E-35 1E-39 250.8 20.7 179 97-359 9-187 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 5.4E-35 1.9E-39 242.3 21.0 166 102-354 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.7E-35 2.3E-39 242.3 20.0 165 100-352 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 2E-34 6.9E-39 239.1 21.3 164 101-352 2-167 (167)
8 2qfj_A FBP-interacting repress 100.0 3.4E-34 1.2E-38 248.2 23.5 181 100-357 27-207 (216)
9 2cjk_A Nuclear polyadenylated 100.0 7.6E-35 2.6E-39 241.7 15.4 165 100-355 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1.9E-33 6.5E-38 235.1 19.7 166 100-353 2-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 2.7E-33 9.2E-38 234.1 14.5 167 96-355 8-174 (175)
12 2g4b_A Splicing factor U2AF 65 100.0 2.3E-32 7.9E-37 227.8 19.5 159 100-353 3-172 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 5.5E-32 1.9E-36 230.9 22.0 183 100-357 3-196 (198)
14 3tyt_A Heterogeneous nuclear r 100.0 1.2E-31 4.1E-36 228.1 21.0 195 100-352 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 5E-31 1.7E-35 237.7 24.9 246 98-353 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 5.8E-31 2E-35 229.2 22.1 195 98-355 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 5E-31 1.7E-35 224.9 16.9 192 100-355 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.1E-30 3.6E-35 232.1 19.1 161 98-359 19-183 (261)
19 3smz_A Protein raver-1, ribonu 99.9 8.1E-27 2.8E-31 210.3 18.6 164 98-266 92-265 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 3.5E-26 1.2E-30 207.0 15.1 162 99-265 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 9.1E-24 3.1E-28 172.7 18.1 85 274-358 69-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 8.9E-23 3E-27 156.8 10.1 98 98-197 2-113 (115)
23 2i2y_A Fusion protein consists 99.9 5.5E-22 1.9E-26 160.4 13.5 139 140-356 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.5E-22 1.2E-26 148.6 11.2 83 98-180 16-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-22 1.1E-26 148.8 10.8 80 275-354 19-98 (99)
26 2lxi_A RNA-binding protein 10; 99.8 1.2E-21 4.2E-26 143.5 7.6 83 276-358 2-86 (91)
27 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.9E-21 2.4E-25 155.0 12.2 86 273-358 37-122 (156)
28 3s8s_A Histone-lysine N-methyl 99.8 7.8E-21 2.7E-25 144.1 11.4 84 98-181 3-86 (110)
29 3q2s_C Cleavage and polyadenyl 99.8 1.5E-21 5E-26 168.4 7.4 81 275-355 68-150 (229)
30 2lxi_A RNA-binding protein 10; 99.8 2.1E-21 7E-26 142.2 6.6 82 101-182 1-84 (91)
31 3s8s_A Histone-lysine N-methyl 99.8 1.5E-20 5.2E-25 142.5 11.4 84 274-357 5-88 (110)
32 2lkz_A RNA-binding protein 5; 99.8 4.8E-21 1.7E-25 140.6 8.0 79 276-354 10-94 (95)
33 2dnz_A Probable RNA-binding pr 99.8 4.2E-20 1.4E-24 137.0 12.6 84 274-357 4-87 (95)
34 1whw_A Hypothetical protein ri 99.8 7E-20 2.4E-24 136.9 13.5 86 273-358 6-91 (99)
35 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-19 4.9E-24 139.2 15.1 88 272-359 12-99 (115)
36 2lkz_A RNA-binding protein 5; 99.8 6.2E-21 2.1E-25 140.0 7.0 80 101-180 9-94 (95)
37 2dgs_A DAZ-associated protein 99.8 9E-20 3.1E-24 136.3 13.4 87 272-359 7-93 (99)
38 2dnm_A SRP46 splicing factor; 99.8 6.6E-20 2.3E-24 138.1 12.4 87 272-358 10-96 (103)
39 1x5u_A Splicing factor 3B subu 99.8 9.3E-20 3.2E-24 137.8 13.2 89 271-359 11-99 (105)
40 2lea_A Serine/arginine-rich sp 99.8 1.3E-20 4.6E-25 148.7 8.6 126 227-359 6-131 (135)
41 1x5t_A Splicing factor 3B subu 99.8 4.5E-20 1.6E-24 137.1 10.8 85 274-358 4-89 (96)
42 3pgw_S U1-70K; protein-RNA com 99.8 1.5E-20 5.3E-25 177.2 10.3 86 272-357 99-184 (437)
43 2cq0_A Eukaryotic translation 99.8 8.3E-20 2.8E-24 137.5 12.3 87 272-358 12-98 (103)
44 3md1_A Nuclear and cytoplasmic 99.8 6.8E-20 2.3E-24 132.2 11.2 81 276-356 2-82 (83)
45 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8E-20 2.7E-24 137.4 11.7 87 273-359 10-96 (102)
46 1x5s_A Cold-inducible RNA-bind 99.8 7.3E-20 2.5E-24 137.6 11.1 87 272-358 9-95 (102)
47 2x1f_A MRNA 3'-END-processing 99.8 1.1E-19 3.8E-24 134.9 12.0 83 275-357 2-84 (96)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.9E-20 2.4E-24 133.5 10.6 82 274-355 5-86 (87)
49 3lqv_A PRE-mRNA branch site pr 99.8 4.7E-20 1.6E-24 141.9 10.2 106 97-207 4-109 (115)
50 4f25_A Polyadenylate-binding p 99.8 5E-20 1.7E-24 141.4 10.1 83 275-359 5-87 (115)
51 2cph_A RNA binding motif prote 99.8 2.2E-19 7.7E-24 136.3 13.4 88 271-358 11-100 (107)
52 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.7E-20 3E-24 132.3 10.6 81 273-353 5-85 (85)
53 1u6f_A Tcubp1, RNA-binding pro 99.8 2.6E-19 9E-24 142.7 14.4 88 271-358 38-125 (139)
54 2dnz_A Probable RNA-binding pr 99.8 1.1E-19 3.7E-24 134.8 11.3 85 98-182 2-86 (95)
55 1x4h_A RNA-binding protein 28; 99.8 2.9E-19 9.8E-24 136.6 13.9 88 272-359 12-105 (111)
56 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.3E-20 3.2E-24 132.8 10.6 83 99-181 4-86 (87)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.3E-20 2.8E-24 132.4 10.2 82 98-179 4-85 (85)
58 2cqc_A Arginine/serine-rich sp 99.8 1.7E-19 5.9E-24 133.7 12.1 85 270-354 10-94 (95)
59 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-19 5.5E-24 138.9 12.4 87 273-359 23-109 (115)
60 2cqd_A RNA-binding region cont 99.8 5E-19 1.7E-23 136.3 15.1 85 272-357 14-98 (116)
61 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-19 7.2E-24 133.0 12.4 83 271-353 12-94 (94)
62 1wi8_A EIF-4B, eukaryotic tran 99.8 3.9E-19 1.3E-23 134.1 13.7 84 273-358 13-97 (104)
63 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5.1E-24 130.4 10.9 80 102-181 2-81 (83)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.4E-20 3.2E-24 149.5 11.0 130 230-359 11-156 (165)
65 2d9p_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 135.6 11.8 86 272-359 12-97 (103)
66 2do4_A Squamous cell carcinoma 99.8 2.5E-19 8.7E-24 134.1 12.4 85 272-357 14-98 (100)
67 2cpf_A RNA binding motif prote 99.8 1E-19 3.4E-24 135.8 10.1 85 274-358 4-91 (98)
68 2x1f_A MRNA 3'-END-processing 99.8 1.7E-19 5.9E-24 133.9 11.2 85 100-184 1-85 (96)
69 2dgx_A KIAA0430 protein; RRM d 99.8 3.2E-19 1.1E-23 132.2 12.5 82 273-357 7-92 (96)
70 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.5E-19 2.2E-23 132.6 14.3 86 272-359 12-97 (103)
71 2dng_A Eukaryotic translation 99.8 3.4E-19 1.2E-23 134.1 12.8 85 272-358 12-96 (103)
72 2cqc_A Arginine/serine-rich sp 99.8 1.5E-19 5.1E-24 134.1 10.6 84 97-180 11-94 (95)
73 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.8E-24 134.8 11.0 86 98-183 5-90 (99)
74 2cq3_A RNA-binding protein 9; 99.8 7.9E-19 2.7E-23 132.1 14.7 86 271-358 11-96 (103)
75 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-19 5.2E-24 133.7 10.6 83 97-179 12-94 (94)
76 3r27_A HnRNP L, heterogeneous 99.8 2.2E-19 7.4E-24 131.4 11.0 79 272-356 18-98 (100)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 2.5E-19 8.7E-24 135.7 11.7 87 272-358 10-99 (106)
78 2fy1_A RNA-binding motif prote 99.8 3.3E-19 1.1E-23 136.9 12.5 83 274-357 6-88 (116)
79 3p5t_L Cleavage and polyadenyl 99.8 4.3E-20 1.5E-24 135.2 7.2 80 102-181 2-83 (90)
80 1oo0_B CG8781-PA, drosophila Y 99.8 3.3E-19 1.1E-23 136.0 12.3 86 272-357 23-108 (110)
81 2cpe_A RNA-binding protein EWS 99.8 3.8E-19 1.3E-23 136.3 12.6 87 272-358 12-106 (113)
82 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-19 8.3E-24 125.9 10.4 73 275-353 7-79 (89)
83 3ns6_A Eukaryotic translation 99.8 4.9E-20 1.7E-24 137.6 7.3 81 275-355 6-93 (100)
84 2la6_A RNA-binding protein FUS 99.8 1.9E-19 6.5E-24 134.5 10.6 84 96-179 8-99 (99)
85 2dgs_A DAZ-associated protein 99.8 2.5E-19 8.5E-24 133.9 11.1 84 98-182 7-90 (99)
86 1sjq_A Polypyrimidine tract-bi 99.8 2E-19 6.7E-24 133.1 10.2 80 273-358 14-95 (105)
87 3ns6_A Eukaryotic translation 99.8 3.7E-20 1.3E-24 138.3 6.3 82 100-181 5-93 (100)
88 2dnh_A Bruno-like 5, RNA bindi 99.8 4.6E-19 1.6E-23 134.0 12.4 86 273-359 13-101 (105)
89 2jrs_A RNA-binding protein 39; 99.8 1.8E-19 6E-24 136.5 10.0 85 97-181 22-106 (108)
90 3p5t_L Cleavage and polyadenyl 99.8 2.8E-20 9.5E-25 136.3 5.3 82 276-357 2-85 (90)
91 2jrs_A RNA-binding protein 39; 99.8 2.2E-19 7.5E-24 136.0 10.3 85 272-356 23-107 (108)
92 1p27_B RNA-binding protein 8A; 99.8 2.6E-19 8.8E-24 135.7 10.7 85 272-356 20-104 (106)
93 4a8x_A RNA-binding protein wit 99.8 2.1E-19 7.2E-24 131.2 9.9 83 275-357 4-87 (88)
94 2cq0_A Eukaryotic translation 99.8 1.9E-19 6.4E-24 135.6 9.8 84 98-181 12-95 (103)
95 2do4_A Squamous cell carcinoma 99.8 3.5E-19 1.2E-23 133.3 11.2 83 98-181 14-96 (100)
96 1x5t_A Splicing factor 3B subu 99.8 1.6E-19 5.6E-24 134.1 9.3 83 99-181 3-86 (96)
97 1x5u_A Splicing factor 3B subu 99.8 2.8E-19 9.5E-24 135.2 10.7 86 97-182 11-96 (105)
98 1sjq_A Polypyrimidine tract-bi 99.8 2.8E-19 9.4E-24 132.3 10.3 79 97-181 12-92 (105)
99 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-19 7.4E-24 135.0 9.8 85 97-181 8-92 (102)
100 2cpz_A CUG triplet repeat RNA- 99.8 2.6E-19 9.1E-24 137.6 10.5 85 98-182 22-106 (115)
101 2kxn_B Transformer-2 protein h 99.8 2.5E-19 8.6E-24 140.0 10.4 87 271-357 42-128 (129)
102 2la6_A RNA-binding protein FUS 99.8 2.9E-19 9.9E-24 133.5 10.2 83 271-353 9-99 (99)
103 2dgo_A Cytotoxic granule-assoc 99.8 4.3E-19 1.5E-23 136.5 11.5 85 98-182 12-96 (115)
104 2do0_A HnRNP M, heterogeneous 99.8 1.8E-18 6.1E-23 132.9 14.9 85 273-358 13-97 (114)
105 1x4d_A Matrin 3; structural ge 99.8 4E-19 1.4E-23 131.6 10.8 79 273-357 13-94 (102)
106 3q2s_C Cleavage and polyadenyl 99.8 8.7E-20 3E-24 157.3 8.3 82 100-181 67-150 (229)
107 2dh8_A DAZ-associated protein 99.8 3.7E-19 1.3E-23 134.5 10.8 87 271-358 12-98 (105)
108 2dnm_A SRP46 splicing factor; 99.8 2.1E-19 7E-24 135.4 9.2 84 98-181 10-93 (103)
109 1x4a_A Splicing factor, argini 99.8 1.8E-18 6E-23 131.6 14.5 83 272-357 19-101 (109)
110 2dhg_A TRNA selenocysteine ass 99.8 3.1E-19 1.1E-23 134.7 10.2 86 273-359 7-94 (104)
111 1p27_B RNA-binding protein 8A; 99.8 3.8E-19 1.3E-23 134.7 10.6 83 99-181 21-103 (106)
112 1s79_A Lupus LA protein; RRM, 99.8 1.9E-19 6.6E-24 134.5 8.8 80 99-180 9-88 (103)
113 1x4h_A RNA-binding protein 28; 99.8 4.2E-19 1.4E-23 135.7 10.9 85 97-181 11-101 (111)
114 3ucg_A Polyadenylate-binding p 99.8 4.4E-19 1.5E-23 129.8 10.6 81 275-356 6-86 (89)
115 2kxn_B Transformer-2 protein h 99.8 3.1E-19 1.1E-23 139.5 10.2 86 96-181 41-126 (129)
116 2cpf_A RNA binding motif prote 99.8 2.6E-19 8.9E-24 133.5 9.3 84 99-182 3-89 (98)
117 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.4E-24 135.0 8.9 85 98-182 9-93 (102)
118 3ex7_B RNA-binding protein 8A; 99.8 4.9E-19 1.7E-23 138.6 11.3 87 272-358 19-105 (126)
119 3s7r_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 128.8 10.5 81 97-178 7-87 (87)
120 2m2b_A RNA-binding protein 10; 99.8 3.3E-19 1.1E-23 140.3 9.9 87 272-359 20-112 (131)
121 2cq1_A PTB-like protein L; RRM 99.8 2.2E-18 7.7E-23 127.8 13.7 82 272-359 12-95 (101)
122 1x4e_A RNA binding motif, sing 99.8 1.3E-19 4.5E-24 131.3 6.9 82 98-179 2-83 (85)
123 2div_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 133.3 9.1 85 273-357 7-96 (99)
124 1s79_A Lupus LA protein; RRM, 99.8 3E-19 1E-23 133.5 8.8 79 274-354 10-88 (103)
125 2ywk_A Putative RNA-binding pr 99.8 7.1E-19 2.4E-23 130.3 10.8 82 272-354 13-94 (95)
126 2ywk_A Putative RNA-binding pr 99.8 6.4E-19 2.2E-23 130.6 10.5 81 98-179 13-93 (95)
127 3r27_A HnRNP L, heterogeneous 99.8 7.2E-19 2.5E-23 128.6 10.4 79 97-181 17-97 (100)
128 2cph_A RNA binding motif prote 99.8 6.4E-19 2.2E-23 133.7 10.6 86 98-183 12-99 (107)
129 1x4b_A Heterogeneous nuclear r 99.8 5.7E-19 1.9E-23 136.0 10.4 86 272-358 24-109 (116)
130 2khc_A Testis-specific RNP-typ 99.8 7.8E-19 2.7E-23 135.7 11.2 82 272-353 37-118 (118)
131 2div_A TRNA selenocysteine ass 99.8 4.3E-19 1.5E-23 132.6 9.4 84 98-181 6-94 (99)
132 2dgp_A Bruno-like 4, RNA bindi 99.8 4.7E-19 1.6E-23 134.2 9.7 85 98-182 10-97 (106)
133 2dgv_A HnRNP M, heterogeneous 99.8 6.5E-19 2.2E-23 129.7 10.1 84 273-358 6-89 (92)
134 2kt5_A RNA and export factor-b 99.8 3.4E-18 1.2E-22 133.2 14.8 87 270-357 30-116 (124)
135 1oo0_B CG8781-PA, drosophila Y 99.8 6.4E-19 2.2E-23 134.4 10.4 84 98-181 23-106 (110)
136 3n9u_C Cleavage and polyadenyl 99.8 5.2E-19 1.8E-23 142.8 10.3 82 100-181 54-137 (156)
137 3ucg_A Polyadenylate-binding p 99.8 7.4E-19 2.5E-23 128.6 10.2 80 101-181 6-85 (89)
138 2cq4_A RNA binding motif prote 99.8 3.1E-19 1.1E-23 137.0 8.4 85 273-358 23-107 (114)
139 2cpi_A CCR4-NOT transcription 99.8 1.3E-18 4.4E-23 132.7 11.8 84 273-356 13-102 (111)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.4E-23 144.3 11.0 84 98-181 69-152 (165)
141 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-18 3.6E-23 132.0 11.0 83 98-181 12-97 (105)
142 2dhg_A TRNA selenocysteine ass 99.8 8.5E-19 2.9E-23 132.3 10.4 83 98-181 6-90 (104)
143 1wex_A Hypothetical protein (r 99.8 2.1E-18 7.3E-23 128.8 12.4 81 272-358 12-94 (104)
144 2fy1_A RNA-binding motif prote 99.8 8.6E-19 2.9E-23 134.5 10.5 83 98-181 4-86 (116)
145 2dgu_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 128.4 13.7 79 273-359 9-87 (103)
146 3ulh_A THO complex subunit 4; 99.8 1.2E-18 4.3E-23 132.1 11.2 82 97-179 25-106 (107)
147 2dis_A Unnamed protein product 99.8 1.7E-18 6E-23 131.7 12.0 85 274-358 7-95 (109)
148 2dnq_A RNA-binding protein 4B; 99.8 2E-18 6.7E-23 126.4 11.9 79 272-358 5-83 (90)
149 2khc_A Testis-specific RNP-typ 99.8 5.5E-19 1.9E-23 136.6 9.3 81 98-178 37-117 (118)
150 1x4c_A Splicing factor, argini 99.8 4.8E-18 1.6E-22 128.8 14.3 79 273-358 13-96 (108)
151 2cqp_A RNA-binding protein 12; 99.8 4.1E-19 1.4E-23 132.4 8.2 84 272-355 12-95 (98)
152 4a8x_A RNA-binding protein wit 99.8 6.3E-19 2.2E-23 128.7 9.0 82 100-181 3-85 (88)
153 3s7r_A Heterogeneous nuclear r 99.8 1.4E-18 4.8E-23 126.4 10.7 79 273-352 9-87 (87)
154 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-18 4E-23 122.4 9.8 75 99-179 5-79 (89)
155 2ek1_A RNA-binding protein 12; 99.8 3E-19 1E-23 132.4 7.3 82 98-179 12-93 (95)
156 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-18 5.1E-23 131.7 11.2 85 273-358 23-107 (109)
157 2cpe_A RNA-binding protein EWS 99.8 8.5E-19 2.9E-23 134.4 10.0 85 98-182 12-104 (113)
158 2dng_A Eukaryotic translation 99.8 9.7E-19 3.3E-23 131.6 10.1 82 98-181 12-93 (103)
159 2d9p_A Polyadenylate-binding p 99.8 9.1E-19 3.1E-23 131.8 9.9 83 98-182 12-94 (103)
160 3ulh_A THO complex subunit 4; 99.8 1.5E-18 5E-23 131.7 11.0 81 272-353 26-106 (107)
161 2mss_A Protein (musashi1); RNA 99.8 3.7E-19 1.3E-23 125.5 7.1 75 103-178 1-75 (75)
162 2dh8_A DAZ-associated protein 99.8 6.6E-19 2.3E-23 133.1 9.0 84 98-182 13-96 (105)
163 2cqg_A TDP-43, TAR DNA-binding 99.8 4E-18 1.4E-22 128.3 13.3 85 272-358 12-96 (103)
164 2rs2_A Musashi-1, RNA-binding 99.8 9.7E-19 3.3E-23 132.7 9.6 85 96-181 20-104 (109)
165 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.8E-19 1.6E-23 132.3 7.8 83 272-356 16-99 (100)
166 1x4d_A Matrin 3; structural ge 99.8 4.9E-19 1.7E-23 131.1 7.7 81 98-184 12-95 (102)
167 1x4e_A RNA binding motif, sing 99.8 2.3E-19 7.8E-24 130.0 5.8 81 274-354 4-84 (85)
168 3n9u_C Cleavage and polyadenyl 99.8 9.4E-19 3.2E-23 141.3 9.9 81 275-355 55-137 (156)
169 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.8E-23 133.8 10.4 82 98-180 14-95 (116)
170 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-18 5.9E-23 127.4 10.4 82 98-181 5-86 (92)
171 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-18 4E-23 131.4 9.6 81 99-181 13-94 (104)
172 2ad9_A Polypyrimidine tract-bi 99.8 2.2E-18 7.4E-23 130.9 10.8 82 272-359 28-111 (119)
173 2fc9_A NCL protein; structure 99.8 5.3E-18 1.8E-22 127.1 12.9 82 272-357 12-93 (101)
174 2err_A Ataxin-2-binding protei 99.8 1.4E-18 4.8E-23 131.9 9.8 83 271-355 25-107 (109)
175 2cqp_A RNA-binding protein 12; 99.8 6E-19 2E-23 131.6 7.6 83 98-180 12-94 (98)
176 2cq3_A RNA-binding protein 9; 99.8 3.6E-18 1.2E-22 128.5 11.9 83 97-181 11-93 (103)
177 2mss_A Protein (musashi1); RNA 99.8 4.7E-19 1.6E-23 125.0 6.6 75 277-352 1-75 (75)
178 2dgt_A RNA-binding protein 30; 99.8 5.9E-18 2E-22 124.4 12.8 79 272-358 7-85 (92)
179 1p1t_A Cleavage stimulation fa 99.8 4.2E-19 1.4E-23 134.0 6.7 85 274-358 7-91 (104)
180 3ex7_B RNA-binding protein 8A; 99.8 1.6E-18 5.4E-23 135.7 10.1 84 98-181 19-102 (126)
181 1wg5_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 128.2 11.9 83 273-357 13-96 (104)
182 1p1t_A Cleavage stimulation fa 99.8 8.9E-19 3E-23 132.2 8.3 82 100-181 7-88 (104)
183 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-18 8E-23 127.5 10.4 80 99-181 7-90 (96)
184 2nlw_A Eukaryotic translation 99.8 2.3E-18 7.8E-23 129.8 10.4 81 274-356 14-101 (105)
185 2jwn_A Embryonic polyadenylate 99.8 2E-18 6.9E-23 134.7 10.4 83 274-357 35-117 (124)
186 2ek1_A RNA-binding protein 12; 99.8 4.3E-19 1.5E-23 131.5 6.3 81 274-354 14-94 (95)
187 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.6E-18 1.2E-22 128.5 11.4 82 98-181 12-93 (103)
188 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-18 6.2E-23 137.8 10.2 84 98-181 39-122 (139)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.4E-19 1.5E-23 125.9 5.9 76 102-178 1-76 (77)
190 2fc8_A NCL protein; structure 99.8 4.9E-18 1.7E-22 127.6 11.9 85 270-357 10-94 (102)
191 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.9E-19 2.3E-23 131.5 7.2 82 98-181 16-98 (100)
192 2hvz_A Splicing factor, argini 99.8 1.2E-18 4.1E-23 130.7 8.5 84 102-190 1-100 (101)
193 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-18 4.1E-23 130.2 8.4 82 272-356 12-93 (102)
194 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.3E-18 1.1E-22 139.1 11.5 84 98-181 36-119 (156)
195 2kt5_A RNA and export factor-b 99.8 4.2E-18 1.4E-22 132.8 11.6 84 98-182 32-115 (124)
196 2dgw_A Probable RNA-binding pr 99.8 3.6E-18 1.2E-22 125.4 10.5 81 273-356 8-88 (91)
197 1x4f_A Matrin 3; structural ge 99.8 2.4E-18 8.3E-23 129.1 9.7 82 272-359 22-106 (112)
198 2dgw_A Probable RNA-binding pr 99.8 3E-18 1E-22 125.8 10.0 81 98-181 7-87 (91)
199 2hvz_A Splicing factor, argini 99.8 3.2E-18 1.1E-22 128.3 10.2 78 276-358 1-78 (101)
200 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-18 3.6E-23 130.5 7.5 81 97-180 11-91 (102)
201 2do0_A HnRNP M, heterogeneous 99.8 4.6E-18 1.6E-22 130.5 11.2 82 98-180 12-93 (114)
202 2dis_A Unnamed protein product 99.8 2.4E-18 8.2E-23 131.0 9.5 85 98-182 5-93 (109)
203 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-18 8E-23 129.8 9.3 77 275-355 28-105 (111)
204 2krb_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 125.1 7.1 74 101-176 1-81 (81)
205 1wg5_A Heterogeneous nuclear r 99.8 2.3E-18 8E-23 129.5 9.3 82 98-181 12-94 (104)
206 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.6E-23 137.4 7.7 83 99-182 21-109 (131)
207 1x4g_A Nucleolysin TIAR; struc 99.8 7.5E-18 2.6E-22 128.1 12.2 79 274-358 24-102 (109)
208 2cpy_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 133.9 7.3 82 98-181 12-94 (114)
209 2cpj_A Non-POU domain-containi 99.8 2.7E-18 9.4E-23 128.1 9.5 85 98-188 12-96 (99)
210 1why_A Hypothetical protein ri 99.8 6.7E-18 2.3E-22 125.5 11.6 79 273-357 15-95 (97)
211 2cq4_A RNA binding motif prote 99.8 1.4E-18 4.9E-23 133.3 8.1 80 101-181 25-104 (114)
212 2cpy_A RNA-binding protein 12; 99.8 7.5E-19 2.6E-23 134.6 6.5 84 272-357 12-96 (114)
213 1x4a_A Splicing factor, argini 99.8 6.2E-18 2.1E-22 128.6 11.6 81 98-181 19-99 (109)
214 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.9E-19 3E-23 124.3 6.4 76 276-352 1-76 (77)
215 2dnp_A RNA-binding protein 14; 99.8 7.9E-18 2.7E-22 123.2 11.7 77 273-357 7-83 (90)
216 2hgl_A HNRPF protein, heteroge 99.8 1E-18 3.4E-23 137.0 7.3 81 98-180 41-124 (136)
217 2cqg_A TDP-43, TAR DNA-binding 99.8 5.7E-18 2E-22 127.4 11.2 83 98-182 12-94 (103)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.8E-18 2.3E-22 134.8 12.3 82 271-352 59-140 (140)
219 2cpj_A Non-POU domain-containi 99.8 6E-18 2.1E-22 126.2 11.1 80 272-357 12-91 (99)
220 2dnn_A RNA-binding protein 12; 99.8 4.4E-18 1.5E-22 128.1 10.3 81 273-356 14-94 (109)
221 2cpd_A Apobec-1 stimulating pr 99.8 2.1E-17 7.3E-22 123.2 14.0 78 272-357 12-91 (99)
222 2a3j_A U1 small nuclear ribonu 99.8 4.3E-18 1.5E-22 131.8 10.4 83 273-358 27-113 (127)
223 2ki2_A SS-DNA binding protein 99.8 4.4E-19 1.5E-23 130.0 4.7 80 102-182 2-81 (90)
224 1wf1_A RNA-binding protein RAL 99.8 9E-18 3.1E-22 127.9 11.9 77 273-357 25-102 (110)
225 2ki2_A SS-DNA binding protein 99.8 4.4E-19 1.5E-23 130.0 4.4 81 276-357 2-82 (90)
226 2cpi_A CCR4-NOT transcription 99.8 2.7E-18 9.3E-23 130.8 8.9 85 99-183 13-103 (111)
227 2ad9_A Polypyrimidine tract-bi 99.8 3.4E-18 1.2E-22 129.8 9.3 79 97-181 27-107 (119)
228 2db1_A Heterogeneous nuclear r 99.7 1.6E-18 5.5E-23 133.4 7.5 81 98-180 14-97 (118)
229 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.9E-18 1.7E-22 135.6 10.4 81 98-178 60-140 (140)
230 2cq1_A PTB-like protein L; RRM 99.7 7.1E-18 2.4E-22 125.1 10.4 78 98-181 12-91 (101)
231 1x4b_A Heterogeneous nuclear r 99.7 3.8E-18 1.3E-22 131.3 9.3 81 101-182 27-107 (116)
232 2cpx_A Hypothetical protein FL 99.7 1.4E-18 4.9E-23 133.6 6.8 84 272-359 22-109 (115)
233 2xnq_A Nuclear polyadenylated 99.7 1.3E-17 4.4E-22 123.6 11.6 77 271-355 18-95 (97)
234 1x4f_A Matrin 3; structural ge 99.7 1.8E-18 6.2E-23 129.8 6.9 84 98-187 22-108 (112)
235 2dnn_A RNA-binding protein 12; 99.7 2.2E-18 7.6E-23 129.7 7.3 78 101-181 16-93 (109)
236 2jvo_A Nucleolar protein 3; nu 99.7 6.5E-18 2.2E-22 127.7 9.9 80 270-357 26-105 (108)
237 2nlw_A Eukaryotic translation 99.7 3.8E-18 1.3E-22 128.6 8.5 80 100-181 14-100 (105)
238 1x5o_A RNA binding motif, sing 99.7 1.4E-17 4.7E-22 127.8 11.8 82 273-355 23-112 (114)
239 1wex_A Hypothetical protein (r 99.7 6.7E-18 2.3E-22 126.1 9.5 79 98-182 12-92 (104)
240 2a3j_A U1 small nuclear ribonu 99.7 7.8E-18 2.7E-22 130.4 10.2 82 98-182 26-111 (127)
241 2err_A Ataxin-2-binding protei 99.7 5.8E-18 2E-22 128.5 9.3 83 97-181 25-107 (109)
242 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.8E-23 130.8 5.2 84 273-358 15-98 (101)
243 2kn4_A Immunoglobulin G-bindin 99.7 6E-18 2.1E-22 138.0 10.0 84 98-181 67-150 (158)
244 2lea_A Serine/arginine-rich sp 99.7 1.6E-18 5.3E-23 136.8 6.2 83 99-181 45-127 (135)
245 2krb_A Eukaryotic translation 99.7 2E-18 6.9E-23 123.6 6.2 73 276-350 2-81 (81)
246 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.9E-22 121.0 10.3 76 272-353 9-85 (85)
247 1x5o_A RNA binding motif, sing 99.7 9.5E-18 3.3E-22 128.7 10.3 81 99-180 23-111 (114)
248 2jvr_A Nucleolar protein 3; RN 99.7 5.6E-18 1.9E-22 127.7 8.8 81 96-180 23-104 (111)
249 2jwn_A Embryonic polyadenylate 99.7 6.1E-18 2.1E-22 131.9 9.4 80 101-181 36-115 (124)
250 2db1_A Heterogeneous nuclear r 99.7 1.1E-18 3.7E-23 134.4 4.8 82 273-356 15-99 (118)
251 2lcw_A RNA-binding protein FUS 99.6 1.6E-19 5.4E-24 139.1 0.0 84 274-357 6-97 (116)
252 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-18 5.9E-23 122.1 5.4 75 103-178 1-75 (75)
253 2la4_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 124.6 10.8 79 96-180 22-100 (101)
254 2hgl_A HNRPF protein, heteroge 99.7 2.4E-18 8.3E-23 134.8 6.3 82 273-356 42-126 (136)
255 2lmi_A GRSF-1, G-rich sequence 99.7 2E-18 6.8E-23 130.7 5.7 81 98-180 8-91 (107)
256 2e5j_A Methenyltetrahydrofolat 99.7 9.5E-18 3.3E-22 124.6 9.2 81 272-357 16-96 (97)
257 2cqh_A IGF-II mRNA-binding pro 99.7 7.2E-18 2.5E-22 124.3 8.5 78 273-357 6-85 (93)
258 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.8E-23 137.1 4.3 81 273-356 44-124 (139)
259 1wel_A RNA-binding protein 12; 99.7 1.3E-18 4.6E-23 135.4 4.6 83 98-181 22-104 (124)
260 2dnq_A RNA-binding protein 4B; 99.7 2E-17 6.8E-22 121.0 10.6 78 97-182 4-81 (90)
261 2kvi_A Nuclear polyadenylated 99.7 5.7E-18 2E-22 125.5 7.8 78 273-358 8-86 (96)
262 1whx_A Hypothetical protein ri 99.7 1E-17 3.5E-22 127.4 9.2 77 274-356 9-85 (111)
263 1nu4_A U1A RNA binding domain; 99.7 8.7E-18 3E-22 125.0 8.7 82 273-357 6-91 (97)
264 1why_A Hypothetical protein ri 99.7 1.9E-17 6.5E-22 123.0 10.5 78 98-181 14-93 (97)
265 2la4_A Nuclear and cytoplasmic 99.7 9.6E-18 3.3E-22 125.7 8.7 76 274-355 26-101 (101)
266 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.9E-22 124.0 8.9 81 272-357 13-93 (96)
267 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-18 9.3E-23 121.1 5.3 75 277-352 1-75 (75)
268 2ytc_A PRE-mRNA-splicing facto 99.7 1.9E-17 6.4E-22 119.9 9.8 76 98-179 9-85 (85)
269 2fc9_A NCL protein; structure 99.7 1.2E-17 4.2E-22 125.1 9.0 81 98-182 12-92 (101)
270 2dha_A FLJ20171 protein; RRM d 99.7 4.4E-18 1.5E-22 130.9 6.6 81 98-180 20-104 (123)
271 3lqv_A PRE-mRNA branch site pr 99.7 1.9E-17 6.5E-22 127.2 10.0 81 274-357 7-87 (115)
272 3zzy_A Polypyrimidine tract-bi 99.7 2.9E-17 9.9E-22 126.2 10.8 80 274-358 27-109 (130)
273 2cq2_A Hypothetical protein LO 99.7 2.8E-17 9.5E-22 123.3 10.5 79 273-357 23-108 (114)
274 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-18 4.5E-23 130.4 3.3 82 98-181 14-95 (101)
275 2diu_A KIAA0430 protein; struc 99.7 4.4E-17 1.5E-21 115.4 10.7 75 275-359 8-88 (96)
276 2lmi_A GRSF-1, G-rich sequence 99.7 4E-18 1.4E-22 129.0 5.6 82 273-356 9-93 (107)
277 2j8a_A Histone-lysine N-methyl 99.7 9.7E-18 3.3E-22 125.8 7.6 79 102-180 3-95 (136)
278 1x4g_A Nucleolysin TIAR; struc 99.7 3.1E-17 1.1E-21 124.6 10.6 81 97-183 21-101 (109)
279 1wg1_A KIAA1579 protein, homol 99.7 1.6E-17 5.6E-22 120.8 8.7 83 99-188 3-85 (88)
280 2xnq_A Nuclear polyadenylated 99.7 4.3E-17 1.5E-21 120.7 11.0 78 96-181 17-95 (97)
281 2hgm_A HNRPF protein, heteroge 99.7 9.1E-18 3.1E-22 129.3 7.5 80 98-180 39-120 (126)
282 1nu4_A U1A RNA binding domain; 99.7 1.1E-17 3.8E-22 124.4 7.6 82 98-182 5-90 (97)
283 1x4c_A Splicing factor, argini 99.7 3.7E-17 1.3E-21 123.9 10.6 78 98-182 12-94 (108)
284 1wel_A RNA-binding protein 12; 99.7 4.2E-18 1.5E-22 132.6 5.3 84 272-356 22-105 (124)
285 1sjr_A Polypyrimidine tract-bi 99.7 5.1E-17 1.7E-21 129.6 11.6 81 273-357 44-126 (164)
286 2fc8_A NCL protein; structure 99.7 2.4E-17 8.1E-22 123.8 9.1 83 97-182 11-93 (102)
287 2diu_A KIAA0430 protein; struc 99.7 6.2E-17 2.1E-21 114.7 10.4 80 98-187 6-90 (96)
288 1x5p_A Negative elongation fac 99.7 1.8E-16 6E-21 117.7 13.5 78 273-358 13-90 (97)
289 2f3j_A RNA and export factor b 99.7 3.5E-17 1.2E-21 135.1 10.2 84 98-182 85-168 (177)
290 2e5j_A Methenyltetrahydrofolat 99.7 3E-17 1E-21 121.9 8.8 79 98-181 16-94 (97)
291 2hgn_A Heterogeneous nuclear r 99.7 4.8E-18 1.6E-22 133.5 4.7 81 98-181 43-123 (139)
292 2cpx_A Hypothetical protein FL 99.7 5.2E-18 1.8E-22 130.4 4.8 85 98-182 22-106 (115)
293 2j8a_A Histone-lysine N-methyl 99.7 2E-17 7E-22 124.0 7.6 80 276-355 3-96 (136)
294 2e44_A Insulin-like growth fac 99.7 6.1E-17 2.1E-21 120.1 10.2 79 274-356 14-93 (96)
295 2dgt_A RNA-binding protein 30; 99.7 7.1E-17 2.4E-21 118.6 10.4 78 97-182 6-83 (92)
296 1whx_A Hypothetical protein ri 99.7 2.2E-17 7.6E-22 125.5 7.9 75 100-180 9-83 (111)
297 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.3E-21 122.3 12.0 78 274-357 24-104 (124)
298 2dnp_A RNA-binding protein 14; 99.7 6.4E-17 2.2E-21 118.3 10.0 77 97-181 5-81 (90)
299 2jvo_A Nucleolar protein 3; nu 99.7 5.6E-17 1.9E-21 122.6 9.9 77 97-181 27-103 (108)
300 2lcw_A RNA-binding protein FUS 99.5 9.1E-19 3.1E-23 134.8 0.0 83 99-181 5-95 (116)
301 2hgm_A HNRPF protein, heteroge 99.7 1.6E-17 5.5E-22 127.9 6.8 81 273-356 40-122 (126)
302 2xs2_A Deleted in azoospermia- 99.7 9.3E-18 3.2E-22 126.0 5.4 79 100-181 8-86 (102)
303 2e5g_A U6 snRNA-specific termi 99.7 9.9E-17 3.4E-21 118.3 10.7 78 274-357 7-84 (94)
304 3beg_B Splicing factor, argini 99.7 5E-17 1.7E-21 124.5 9.4 75 275-356 16-95 (115)
305 2xs2_A Deleted in azoospermia- 99.7 2.5E-17 8.7E-22 123.6 7.3 82 273-357 7-88 (102)
306 1wg1_A KIAA1579 protein, homol 99.7 9.1E-17 3.1E-21 116.9 9.7 75 275-356 5-79 (88)
307 2kvi_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 120.1 8.5 76 98-181 7-83 (96)
308 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.3E-21 116.0 10.2 76 273-357 9-86 (89)
309 2f3j_A RNA and export factor b 99.7 6.2E-17 2.1E-21 133.6 9.6 86 271-357 84-169 (177)
310 4f02_A Polyadenylate-binding p 99.7 9.5E-17 3.3E-21 137.6 11.2 85 273-357 13-97 (213)
311 2dgu_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 120.4 10.0 76 98-181 8-83 (103)
312 1fjc_A Nucleolin RBD2, protein 99.7 2.5E-17 8.6E-22 122.1 6.1 78 99-181 14-91 (96)
313 2dha_A FLJ20171 protein; RRM d 99.7 1.6E-17 5.4E-22 127.7 5.1 80 275-356 23-106 (123)
314 2pe8_A Splicing factor 45; RRM 99.7 1.7E-16 5.7E-21 118.7 10.5 82 274-355 7-94 (105)
315 2cq2_A Hypothetical protein LO 99.7 7.3E-17 2.5E-21 121.1 8.2 78 96-179 20-104 (114)
316 2i2y_A Fusion protein consists 99.7 9.8E-17 3.4E-21 129.4 9.6 79 98-181 70-148 (150)
317 2e5g_A U6 snRNA-specific termi 99.7 1.9E-16 6.4E-21 116.8 10.3 77 99-181 6-82 (94)
318 2e44_A Insulin-like growth fac 99.7 8.1E-17 2.8E-21 119.4 8.3 79 99-181 13-92 (96)
319 3egn_A RNA-binding protein 40; 99.7 1.4E-17 4.9E-22 133.2 4.4 83 273-358 43-133 (143)
320 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-16 4.3E-21 122.1 9.6 77 99-178 6-85 (114)
321 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-16 9.5E-21 117.1 11.1 76 99-182 13-90 (99)
322 2cqh_A IGF-II mRNA-binding pro 99.7 1E-16 3.4E-21 118.1 8.2 78 97-181 4-83 (93)
323 1b7f_A Protein (SXL-lethal pro 99.7 2.5E-16 8.6E-21 129.9 11.2 83 275-357 3-85 (168)
324 1fxl_A Paraneoplastic encephal 99.7 3.1E-16 1.1E-20 129.1 11.4 83 275-357 2-84 (167)
325 1wf0_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.7E-21 116.6 7.5 78 274-358 4-81 (88)
326 3md3_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 128.9 11.4 82 98-179 84-165 (166)
327 2pe8_A Splicing factor 45; RRM 99.7 4.2E-16 1.4E-20 116.5 10.9 83 98-180 5-93 (105)
328 1wf1_A RNA-binding protein RAL 99.7 1.8E-16 6E-21 120.7 9.0 75 99-181 25-100 (110)
329 3tyt_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 132.3 11.3 77 275-356 4-81 (205)
330 3egn_A RNA-binding protein 40; 99.7 3.7E-17 1.2E-21 130.8 4.5 81 98-181 42-130 (143)
331 2hzc_A Splicing factor U2AF 65 99.7 5.3E-16 1.8E-20 112.7 9.9 72 273-351 4-86 (87)
332 2g4b_A Splicing factor U2AF 65 99.7 3.8E-16 1.3E-20 129.3 10.3 80 99-178 92-171 (172)
333 3d2w_A TAR DNA-binding protein 99.7 3.9E-16 1.3E-20 113.4 9.1 76 97-181 7-84 (89)
334 2voo_A Lupus LA protein; RNA-b 99.7 7.2E-16 2.5E-20 129.2 11.8 121 235-357 64-189 (193)
335 2hzc_A Splicing factor U2AF 65 99.7 3.7E-16 1.3E-20 113.5 8.8 71 100-177 5-86 (87)
336 3pgw_S U1-70K; protein-RNA com 99.7 3.4E-16 1.2E-20 147.5 10.8 82 100-181 101-182 (437)
337 1x5p_A Negative elongation fac 99.6 9.4E-16 3.2E-20 113.7 10.8 77 98-182 12-88 (97)
338 2dnl_A Cytoplasmic polyadenyla 99.6 8.3E-16 2.8E-20 117.6 10.6 81 274-357 7-90 (114)
339 3pgw_A U1-A; protein-RNA compl 99.6 6.7E-15 2.3E-19 132.1 18.0 81 273-356 7-91 (282)
340 1sjr_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 123.0 10.2 77 101-181 46-124 (164)
341 2qfj_A FBP-interacting repress 99.6 7.9E-16 2.7E-20 132.4 11.0 83 99-181 123-205 (216)
342 3beg_B Splicing factor, argini 99.6 3.8E-16 1.3E-20 119.6 7.6 69 100-175 15-83 (115)
343 3zzy_A Polypyrimidine tract-bi 99.6 1.1E-15 3.7E-20 117.5 9.9 78 100-182 27-107 (130)
344 2yh0_A Splicing factor U2AF 65 99.6 8.5E-16 2.9E-20 130.3 10.3 84 98-181 111-194 (198)
345 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4.3E-20 129.1 11.0 85 272-357 10-94 (196)
346 2cjk_A Nuclear polyadenylated 99.6 3.6E-16 1.2E-20 128.8 7.4 80 101-181 87-166 (167)
347 3v4m_A Splicing factor U2AF 65 99.6 2.1E-15 7.1E-20 112.8 10.4 82 274-355 4-97 (105)
348 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 115.0 10.8 74 103-182 27-103 (124)
349 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.3E-20 129.7 10.6 98 254-357 113-231 (240)
350 2bz2_A Negative elongation fac 99.6 1.1E-15 3.8E-20 117.7 8.8 77 273-357 37-113 (121)
351 2dit_A HIV TAT specific factor 99.6 5.5E-15 1.9E-19 112.5 12.1 83 272-358 12-105 (112)
352 2bz2_A Negative elongation fac 99.6 2.8E-15 9.4E-20 115.5 9.1 77 97-181 35-111 (121)
353 1wf0_A TDP-43, TAR DNA-binding 99.6 7.2E-16 2.5E-20 112.2 5.4 77 99-182 3-79 (88)
354 2voo_A Lupus LA protein; RNA-b 99.6 3.5E-15 1.2E-19 125.0 10.1 78 101-180 109-186 (193)
355 3nmr_A Cugbp ELAV-like family 99.6 5.2E-15 1.8E-19 122.8 10.6 80 99-179 93-175 (175)
356 2dit_A HIV TAT specific factor 99.6 1.6E-14 5.3E-19 110.0 10.6 84 96-183 10-104 (112)
357 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.8E-19 126.2 10.9 81 271-356 30-111 (229)
358 3sde_A Paraspeckle component 1 99.6 1.3E-14 4.3E-19 128.4 11.3 81 269-355 16-96 (261)
359 3u1l_A PRE-mRNA-splicing facto 99.6 5.8E-15 2E-19 126.1 8.5 78 98-181 131-229 (240)
360 3v4m_A Splicing factor U2AF 65 99.6 1.2E-14 4.3E-19 108.5 8.6 81 100-180 4-96 (105)
361 3ue2_A Poly(U)-binding-splicin 99.6 9.6E-15 3.3E-19 111.2 8.1 81 274-354 19-108 (118)
362 1fje_B Nucleolin RBD12, protei 99.6 8.3E-15 2.9E-19 121.6 8.4 77 100-181 98-174 (175)
363 1jmt_A Splicing factor U2AF 35 99.5 4.5E-15 1.5E-19 110.9 5.0 72 280-352 20-103 (104)
364 1qm9_A Polypyrimidine tract-bi 99.5 2.6E-14 9E-19 121.1 9.9 78 275-357 3-81 (198)
365 3ue2_A Poly(U)-binding-splicin 99.5 3.3E-14 1.1E-18 108.2 8.1 82 99-180 18-108 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.3E-13 8E-18 100.1 11.7 66 285-357 27-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.8E-19 108.7 4.6 72 106-178 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.5 1.8E-13 6.3E-18 103.3 9.8 79 273-355 5-93 (114)
369 3tht_A Alkylated DNA repair pr 99.4 7.9E-13 2.7E-17 119.2 10.2 76 272-353 15-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.9E-12 9.8E-17 94.3 10.4 74 101-181 10-90 (100)
371 3s6e_A RNA-binding protein 39; 99.4 2.3E-12 7.9E-17 97.3 9.6 79 98-180 4-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 1.7E-12 5.8E-17 117.0 8.5 78 96-179 13-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 1.3E-11 4.5E-16 86.6 9.3 73 274-355 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.3 1.8E-11 6.1E-16 92.2 9.6 75 273-353 16-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.2 3.1E-11 1.1E-15 84.7 7.8 74 98-180 4-85 (91)
376 1owx_A Lupus LA protein, SS-B, 99.2 5.9E-11 2E-15 89.4 8.6 75 99-179 16-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 9.3E-11 3.2E-15 82.7 5.9 73 273-354 13-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 2.5E-10 8.6E-15 80.5 6.6 74 97-179 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 99.0 2.8E-09 9.6E-14 91.5 11.9 79 276-354 125-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.9 3.6E-09 1.2E-13 90.8 8.2 83 98-180 121-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.9 1.9E-08 6.4E-13 72.2 9.4 70 276-351 22-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 5.4E-07 1.8E-11 64.7 10.2 72 100-177 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.5 2.5E-06 8.7E-11 60.9 10.9 86 100-194 7-99 (104)
384 1wey_A Calcipressin 1; structu 98.2 7E-06 2.4E-10 58.9 9.0 75 276-356 6-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.0003 1E-08 50.3 12.4 77 274-359 7-88 (104)
386 1wey_A Calcipressin 1; structu 97.9 1.7E-05 5.9E-10 56.9 6.1 74 101-180 5-83 (104)
387 1uw4_A UPF3X; nonsense mediate 97.9 8.5E-05 2.9E-09 52.5 9.4 78 276-353 2-86 (91)
388 1uw4_A UPF3X; nonsense mediate 97.9 6.2E-05 2.1E-09 53.2 8.0 68 102-169 2-71 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.6 0.00046 1.6E-08 51.1 9.4 73 273-353 22-95 (119)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.00064 2.2E-08 50.3 7.7 72 100-179 23-95 (119)
391 2l08_A Regulator of nonsense t 97.4 0.00053 1.8E-08 48.6 6.9 79 275-353 9-94 (97)
392 1whv_A Poly(A)-specific ribonu 97.4 0.00061 2.1E-08 48.0 6.7 55 275-338 16-70 (100)
393 1whv_A Poly(A)-specific ribonu 97.3 0.00091 3.1E-08 47.1 7.2 56 100-164 15-70 (100)
394 3ctr_A Poly(A)-specific ribonu 97.3 0.00055 1.9E-08 48.4 6.0 55 275-338 6-60 (101)
395 2l08_A Regulator of nonsense t 97.1 0.00054 1.8E-08 48.6 4.7 70 100-169 8-79 (97)
396 3ctr_A Poly(A)-specific ribonu 96.9 0.0016 5.4E-08 46.1 4.9 54 103-164 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.6 0.0032 1.1E-07 47.2 5.5 77 276-354 8-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.2 0.0029 1E-07 59.1 3.8 55 101-161 53-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.1 0.0072 2.5E-07 45.3 4.9 79 100-180 6-98 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.8 0.0047 1.6E-07 57.7 3.1 54 276-335 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 89.5 1.1 3.8E-05 42.7 8.4 56 274-338 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.6 1.4 4.9E-05 41.9 8.5 57 101-166 440-496 (507)
403 4eyt_A Telomerase associated p 85.1 7 0.00024 26.6 8.3 56 275-338 12-67 (129)
404 2g0c_A ATP-dependent RNA helic 79.8 5.8 0.0002 26.4 6.2 60 285-353 11-75 (76)
405 4eyt_A Telomerase associated p 71.8 21 0.00071 24.3 9.0 59 100-166 11-69 (129)
406 4e8u_A Putative uncharacterize 52.4 18 0.00061 28.5 4.4 49 276-327 13-72 (172)
407 2g0c_A ATP-dependent RNA helic 51.2 49 0.0017 21.7 6.2 67 103-178 2-74 (76)
408 4e8u_A Putative uncharacterize 44.7 43 0.0015 26.3 5.5 51 103-156 14-75 (172)
409 3j21_T 50S ribosomal protein L 34.4 1.1E+02 0.0036 21.0 5.5 56 278-336 25-82 (86)
410 2pk2_A Cyclin-T1, protein TAT; 33.5 8.8 0.0003 34.6 0.0 13 286-298 228-240 (358)
411 2i9x_A Putative septation prot 28.3 70 0.0024 21.9 3.8 25 127-151 5-29 (87)
412 3fry_A Probable copper-exporti 26.0 1.3E+02 0.0044 19.0 5.5 54 276-336 7-60 (73)
413 2ia9_A Putative septation prot 24.9 85 0.0029 22.1 3.8 25 127-151 5-29 (100)
414 2i9z_A Putative septation prot 24.0 91 0.0031 22.2 3.9 25 127-151 5-29 (105)
415 3ts2_A Protein LIN-28 homolog 23.2 22 0.00075 27.3 0.6 28 290-325 2-29 (148)
416 2w7a_A LINE-1 ORF1P; RNA-bindi 22.1 2.1E+02 0.0072 20.1 5.5 76 101-176 3-98 (100)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.6e-46 Score=335.04 Aligned_cols=246 Identities=19% Similarity=0.351 Sum_probs=226.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 579999999999999999999999999 999988 4568999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
...+|||+|||..+++++|+.+|+.||. |..+.++.+ ..++.++|||||+|.+..+|..|+..+++. .+.++.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEE
Confidence 9999999999999999999999999999 999999888 668899999999999999999999999986 557899999
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCC-CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.++.+..... .....++|||+|||..+ |+++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..||
T Consensus 170 ~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 170 HWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp EECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred EECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 9988765443 33456899999999995 999999999999999999999987 45568999999999999999999999
Q ss_pred CceeCCeEEEEEeccCCCCC
Q 014815 339 KYELDGQALECSLAKPQADQ 358 (418)
Q Consensus 339 g~~i~g~~l~v~~a~~~~~~ 358 (418)
|..|.|++|+|.|+.++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.2e-45 Score=335.03 Aligned_cols=251 Identities=19% Similarity=0.332 Sum_probs=214.8
Q ss_pred hcCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
...++..++|||+|||+++|+++|+++|+.||.|..|+|+++..+ ++|||||+|.+.++|.+|+ .+++..|.|+.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEE
Confidence 344567899999999999999999999999999999999998643 5899999999999999999 5999999999999
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhC-CCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCC
Q 014815 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVG-PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (418)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (418)
|.++. .++|||+|||..+++++|+.+|..+| . |..+.++.+. .+.++|||||+|.+...|..|+..+++. .+.
T Consensus 112 v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~ 185 (292)
T 2ghp_A 112 VSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGL--KIE 185 (292)
T ss_dssp EEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred EEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCC--EeC
Confidence 99874 67899999999999999999999999 7 9999998873 3778999999999999999999999986 457
Q ss_pred CCCceeccCCCCCCCC---CCCccccEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCCC-CCCcCcEEEEEeCCHH
Q 014815 254 TNAPTVSWADPRNVDS---SGASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKP-GQEKNRIGFVHFAERS 328 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~~~g~afV~F~~~~ 328 (418)
++.+.+.++.+..... ......++|||+|||.. +|+++|+++|+.||.|..|+|+++.. ++.++|||||+|.+.+
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 8999999987765433 23456689999999999 99999999999999999999999877 4667899999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 329 SAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 329 ~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
+|.+|+ .|||..|.|++|.|.|+.++
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-37 Score=267.32 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=152.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
.....
T Consensus 94 ~~~~~--------------------------------------------------------------------------- 98 (213)
T 4f02_A 94 RDPSL--------------------------------------------------------------------------- 98 (213)
T ss_dssp CCTHH---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 32110
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+++..+ ++|||||+|.+.++|.+||+.|||
T Consensus 99 -----------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~--~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 99 -----------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp -----------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred -----------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC--CceEEEEEeCCHHHHHHHHHHhCC
Confidence 0001168999999999999999999999999999999987644 579999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCCCC
Q 014815 340 YELDGQALECSLAKPQADQ 358 (418)
Q Consensus 340 ~~i~g~~l~v~~a~~~~~~ 358 (418)
..|+|++|+|.++.++..+
T Consensus 166 ~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp CEETTEECEEEECCCHHHH
T ss_pred CEECCEEEEEEEcCCCccc
Confidence 9999999999999876543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3e-35 Score=250.78 Aligned_cols=179 Identities=20% Similarity=0.407 Sum_probs=152.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 45567999999999999999999999999999999999999999999999999999999999996 59999999999998
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (418)
++...... ..
T Consensus 88 ~~~~~~~~-------------------------------------~~--------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------QR--------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------cc---------------------------------
Confidence 77532110 00
Q ss_pred ceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
.......++|||+|||+.+|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|.+|+..
T Consensus 98 ------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 98 ------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp -----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 00011237999999999999999999999999999999999988888899999999999999999986
Q ss_pred hCCceeCCeEEEEEeccCCCCCC
Q 014815 337 TEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 337 l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
++..|+|+.|.|.++.++....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999887654
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-35 Score=242.33 Aligned_cols=166 Identities=21% Similarity=0.361 Sum_probs=150.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
++|||+|||+++|+++|+++|++||.|.+|++++++. ++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999865 789999999999999999999999999999999999876532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceecc
Q 014815 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (418)
Q Consensus 182 ~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (418)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
......++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 011123799999999999999999999999999999999998888889999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 014815 342 LDGQALECSLAKP 354 (418)
Q Consensus 342 i~g~~l~v~~a~~ 354 (418)
|+|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.7e-35 Score=242.28 Aligned_cols=165 Identities=26% Similarity=0.456 Sum_probs=152.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998775
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
....++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+..|||
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 01127899999999999999999999999999999999987888899999999999999999999999
Q ss_pred ceeCC--eEEEEEec
Q 014815 340 YELDG--QALECSLA 352 (418)
Q Consensus 340 ~~i~g--~~l~v~~a 352 (418)
..|.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2e-34 Score=239.15 Aligned_cols=164 Identities=24% Similarity=0.464 Sum_probs=150.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
+++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998999999999999999999999999999999999999987653
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceec
Q 014815 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (418)
Q Consensus 181 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (418)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred cCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc
Q 014815 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (418)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 340 (418)
....++|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011268999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eeCCeE--EEEEec
Q 014815 341 ELDGQA--LECSLA 352 (418)
Q Consensus 341 ~i~g~~--l~v~~a 352 (418)
.|.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888876
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.4e-34 Score=248.19 Aligned_cols=181 Identities=21% Similarity=0.389 Sum_probs=154.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+++|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999997765
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
..... .... ......
T Consensus 107 ~~~~~----------~~~~----------------------------------------~~~~~~--------------- 121 (216)
T 2qfj_A 107 NIGQA----------QPII----------------------------------------DQLAEE--------------- 121 (216)
T ss_dssp CCGGG----------HHHH----------------------------------------HHHHHH---------------
T ss_pred Ccccc----------chhh----------------------------------------hhhhcc---------------
Confidence 32110 0000 000000
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
....++|||+|||..+|+++|+++|+.||.|..|+|+++..++.++|||||+|.+.++|.+|+..|||
T Consensus 122 ------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 122 ------------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp ------------HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 01127999999999999999999999999999999999988888899999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCCC
Q 014815 340 YELDGQALECSLAKPQAD 357 (418)
Q Consensus 340 ~~i~g~~l~v~~a~~~~~ 357 (418)
..|.|++|+|.++.+...
T Consensus 190 ~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 190 FDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp CBCSSSBCEEEECSSCSS
T ss_pred CEeCCcEEEEEEecCCCC
Confidence 999999999999988644
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.6e-35 Score=241.68 Aligned_cols=165 Identities=19% Similarity=0.441 Sum_probs=149.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 4678999999887654
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCcee
Q 014815 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (418)
Q Consensus 180 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (418)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3110
Q ss_pred ccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC
Q 014815 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (418)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g 339 (418)
....++|||+|||+.+++++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++ +++
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012689999999999999999999999999999999998888889999999999999999998 899
Q ss_pred ceeCCeEEEEEeccCC
Q 014815 340 YELDGQALECSLAKPQ 355 (418)
Q Consensus 340 ~~i~g~~l~v~~a~~~ 355 (418)
..|.|++|+|.+|.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.9e-33 Score=235.13 Aligned_cols=166 Identities=20% Similarity=0.402 Sum_probs=144.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCC--CCcceEEEEEcCHHHHHHHHHHhCCCccC---CeEEE
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSS--ENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIR 174 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i~ 174 (418)
++++|||+|||+++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998877 89999999999999999999999998765 45555
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCC
Q 014815 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (418)
Q Consensus 175 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (418)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 554432110
Q ss_pred CCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q 014815 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (418)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~ 334 (418)
.....++|||+|||..+|+++|+++|++||.|..|+++++.. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 011237899999999999999999999999999999999875 556899999999999999999
Q ss_pred HHhCCceeC---CeEEEEEecc
Q 014815 335 KNTEKYELD---GQALECSLAK 353 (418)
Q Consensus 335 ~~l~g~~i~---g~~l~v~~a~ 353 (418)
..|||..+. |++|+|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.7e-33 Score=234.13 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=144.2
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
..+...++|||+|||+++|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34567899999999999999999999999998766 34455567889999999999999999999 59999999999999
Q ss_pred ccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCC
Q 014815 176 STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTN 255 (418)
Q Consensus 176 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 255 (418)
.++.+...
T Consensus 86 ~~~~~~~~------------------------------------------------------------------------ 93 (175)
T 1fje_B 86 EKPKGRDS------------------------------------------------------------------------ 93 (175)
T ss_dssp ECCCCSSC------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 88764210
Q ss_pred CceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 256 APTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
......++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 94 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 94 --------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp --------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred --------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 011123799999999999999999999999998776 4455668999999999999999999
Q ss_pred HhCCceeCCeEEEEEeccCC
Q 014815 336 NTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 336 ~l~g~~i~g~~l~v~~a~~~ 355 (418)
.|||..|.|++|+|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.3e-32 Score=227.81 Aligned_cols=159 Identities=21% Similarity=0.412 Sum_probs=142.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
+.++|||+|||+++|+++|+++|++| | .|..+.+.+ ++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 7 778887754 4899999999999999999 8999999
Q ss_pred CCeEEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCC
Q 014815 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (418)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (418)
.|+.|+|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999986543110
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHH
Q 014815 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (418)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~ 328 (418)
....++|||+|||..+|+++|+++|++||.|..|++++++.++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 001278999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecc
Q 014815 329 SAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 329 ~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+|.+|+..|||..|+|++|.|.+|.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999984
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=5.5e-32 Score=230.92 Aligned_cols=183 Identities=21% Similarity=0.360 Sum_probs=148.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
.+++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 6666666 445899999999999999999 8999999
Q ss_pred CCeEEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCC
Q 014815 169 KGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (418)
Q Consensus 169 ~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (418)
.|+.|+|.++.......-. ....
T Consensus 76 ~g~~i~v~~~~~~~~~~~~---------------------------------~~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM---------------------------------SENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS---------------------------------SSCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC---------------------------------cCCC------------------------
Confidence 9999999887643210000 0000
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHH
Q 014815 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERS 328 (418)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~ 328 (418)
. ...+...........++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.+
T Consensus 99 --~---------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 --S---------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp --S---------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred --c---------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 0 00000001112234589999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 329 SAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 329 ~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
+|.+|+..|||..|+|+.|+|.++.++..
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999988654
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.2e-31 Score=228.08 Aligned_cols=195 Identities=19% Similarity=0.300 Sum_probs=143.5
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIP-HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
++++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999876 3899999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
..... .|.... + ...+. ..+-.|.... ...+. ..
T Consensus 78 ~~~~~-----~p~~~~-----------~------------~~~~~---~~~~~~~~~~----------~~r~~---~~-- 111 (205)
T 3tyt_A 78 KQPAI-----MPGQSY-----------G------------LEDGS---CSYKDFSESR----------NNRFS---TP-- 111 (205)
T ss_dssp SCSCC-----CCCSCC-----------B------------CTTSC---BSEEECTTCT----------TCSCS---SH--
T ss_pred cCCcc-----CCCccc-----------c------------cccCC---ccccccCCCc----------ccccc---Cc--
Confidence 64322 111000 0 00000 0000000000 00000 00
Q ss_pred eccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccE--EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI--TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
.... ......++++|||+|||+.+|+++|+++|++||.| ..|+++.++ + .++|||||+|.+.++|.+||..
T Consensus 112 -~~~~----~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~-~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 112 -EQAA----KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-S-ERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp -HHHT----TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-S-SSSEEEEEECSSHHHHHHHHHH
T ss_pred -cccc----ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-C-CCceEEEEEeCCHHHHHHHHHH
Confidence 0000 00012345799999999999999999999999998 899998876 3 3359999999999999999999
Q ss_pred hCCceeCCe----EEEEEec
Q 014815 337 TEKYELDGQ----ALECSLA 352 (418)
Q Consensus 337 l~g~~i~g~----~l~v~~a 352 (418)
|||..|.|+ ++.|+||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999885 6777765
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5e-31 Score=237.66 Aligned_cols=246 Identities=16% Similarity=0.220 Sum_probs=152.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
..++++|||+|||+++|+++|+ ++|++||.|..|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999986 58899999999999999999999999999999999
Q ss_pred EeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCcc----EEEEEecCH-HHHHHHHHHhcCC
Q 014815 174 RCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRG----FAFIEYHNH-KCAEYSRQKMTNP 248 (418)
Q Consensus 174 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g----~~fv~f~~~-~~a~~a~~~~~~~ 248 (418)
+|.++.............. ........-..... .................. .+-..-... ..+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTF-VERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCc-ccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999875543211111110 00000000000000 000000000000000000 000000000 0000000000000
Q ss_pred CCCCC------CCCc-eeccC-------------CCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEec
Q 014815 249 NFKLG------TNAP-TVSWA-------------DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (418)
Q Consensus 249 ~~~~~------~~~~-~~~~~-------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (418)
.-... .... ...+. .+.........+.++|||+|||..+++++|+++|+.||.|..|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 0000 00000 0000001223356899999999999999999999999999999999
Q ss_pred cCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q 014815 309 PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALECSLAK 353 (418)
Q Consensus 309 ~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~-g~~l~v~~a~ 353 (418)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 765 589999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=5.8e-31 Score=229.21 Aligned_cols=195 Identities=19% Similarity=0.277 Sum_probs=148.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+++++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45679999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (418)
++....... +..... .... .-.|.. .........
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~-----~~~~~~-------------~~~~~~~~~ 139 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGL-----TKDYGN-------------SPLHRFKKP 139 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTT-----EEECTT-------------CSSCCCCST
T ss_pred EecCccccC----cccccc------------------------cccc-----cccccc-------------CcccccCCc
Confidence 887542210 000000 0000 000000 000000000
Q ss_pred ceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
.. ........++++|||+|||..+++++|+++|+.|| .|..|+++... +|||||+|.+.++|.+|+.
T Consensus 140 ------~~-~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 140 ------GS-KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ------TS-GGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHH
T ss_pred ------cc-cccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHH
Confidence 00 00001123458999999999999999999999999 99999997642 6899999999999999999
Q ss_pred HhCCceeC-CeEEEEEeccCC
Q 014815 336 NTEKYELD-GQALECSLAKPQ 355 (418)
Q Consensus 336 ~l~g~~i~-g~~l~v~~a~~~ 355 (418)
.|||..|. |++|+|.|++++
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSSC
T ss_pred HHCCCccCCCCeEEEEEecCC
Confidence 99999999 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=5e-31 Score=224.85 Aligned_cols=192 Identities=20% Similarity=0.322 Sum_probs=147.8
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.+++|||+|||+ ++|+++|+++|++||.|..|++++++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999999874 789999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCce
Q 014815 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (418)
Q Consensus 179 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (418)
...... ++.... ......+. |.. ... .+
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~-----~~~-------------~~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKD-----YGN-------------SPL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEE-----SSC-------------CCT---TS---
T ss_pred cCCCcC----CCCcCC------------------------cccccccc-----ccC-------------Cch---hh---
Confidence 754311 010000 00000000 000 000 00
Q ss_pred eccCCCC-CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 259 VSWADPR-NVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
+..+. ........++++|||+|||..+++++|+++|+.|| .|..|+++++. +|||||+|.+.++|.+|+..
T Consensus 105 --~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 105 --FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp --SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHH
T ss_pred --ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHH
Confidence 00000 00011223468999999999999999999999999 99999997753 68999999999999999999
Q ss_pred hCCceeC-CeEEEEEeccCC
Q 014815 337 TEKYELD-GQALECSLAKPQ 355 (418)
Q Consensus 337 l~g~~i~-g~~l~v~~a~~~ 355 (418)
|||..|. |++|+|.|++++
T Consensus 178 l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HTSSCCSSCCSCCEEEECCC
T ss_pred hcCCccCCCCeEEEEeeccc
Confidence 9999999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.1e-30 Score=232.14 Aligned_cols=161 Identities=27% Similarity=0.399 Sum_probs=144.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+..+++..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345689999999999999999999999999999999654 89999999999999999999999999999999976
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCc
Q 014815 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (418)
Q Consensus 178 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (418)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 541
Q ss_pred eeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh
Q 014815 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (418)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 337 (418)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1689999999999999999999999999999999984 6667899999999999999999999
Q ss_pred C-CceeC---CeEEEEEeccCCCCCC
Q 014815 338 E-KYELD---GQALECSLAKPQADQK 359 (418)
Q Consensus 338 ~-g~~i~---g~~l~v~~a~~~~~~~ 359 (418)
| +..+. +++|.|.++.+.....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESSS
T ss_pred cCCeEEecCCCceEEEeeccccCccC
Confidence 5 54444 9999999998765443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=8.1e-27 Score=210.31 Aligned_cols=164 Identities=18% Similarity=0.359 Sum_probs=151.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.+..++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc---------ccccccCCCCCC-CHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHHHhcC
Q 014815 178 SQAK---------YRLFIGNIPRNW-GSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (418)
Q Consensus 178 ~~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (418)
+.+. .+|||+|||..+ ++++|+.+|+.||. |..+.++.+ .++.++|+|||.|.+.++|..|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8654 479999999995 99999999999999 999999888 4788999999999999999999999998
Q ss_pred CCCCCCCCCceeccCCCCC
Q 014815 248 PNFKLGTNAPTVSWADPRN 266 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (418)
.. +.++.+.+.|+.+..
T Consensus 249 ~~--~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 249 LS--LGGSHLRVSFCAPGP 265 (284)
T ss_dssp CE--ETTEECEEEECCSSS
T ss_pred Cc--cCCeEEEEEEecCCC
Confidence 75 478899999987764
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=3.5e-26 Score=207.02 Aligned_cols=162 Identities=21% Similarity=0.346 Sum_probs=140.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...++|||+|||+++|+++|+++|+.|| .|..|+++.++. |.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999999876 88999999999999999999999999999999999998
Q ss_pred ccc-------------cccccccCCCCC-CCHHHHHHHHHhhCCCeeEEEEeccCCCCCCCccEEEEEecCHHHHHHHHH
Q 014815 178 SQA-------------KYRLFIGNIPRN-WGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (418)
Q Consensus 178 ~~~-------------~~~l~v~~l~~~-~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (418)
+.+ ..+|||+|||.. +++++|+.+|+.||. |..+.++.+...++.++|||||.|.+..+|..|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 753 257999999999 999999999999999 9999998873325899999999999999999999
Q ss_pred HhcCCCCCCCCCCceeccCCCC
Q 014815 244 KMTNPNFKLGTNAPTVSWADPR 265 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
.|++. .+.++.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 99986 467899999998765
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=9.1e-24 Score=172.73 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=80.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014815 354 PQADQ 358 (418)
Q Consensus 354 ~~~~~ 358 (418)
+...+
T Consensus 149 ~~~~~ 153 (158)
T 2kn4_A 149 YGRPP 153 (158)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=8.9e-23 Score=156.81 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
|...++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999985 45799999999999999999999999999999999988
Q ss_pred cccc--------------ccccccCCCCCCCHHH
Q 014815 178 SQAK--------------YRLFIGNIPRNWGSED 197 (418)
Q Consensus 178 ~~~~--------------~~l~v~~l~~~~~~~~ 197 (418)
+.++ .+|||+|||+.+|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7643 3699999999988753
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=5.5e-22 Score=160.42 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=112.4
Q ss_pred CCCcceEEEEEcCHHHHHHHHHHh-CCCccCCeEEEeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeccC
Q 014815 140 SENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (418)
Q Consensus 140 g~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (418)
...+|+++|+|.+.++|.+|++.+ |+..+.| .|.+.++...........+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~---------------------------- 60 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH---------------------------- 60 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS----------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc----------------------------
Confidence 456999999999999999999999 9999999 9999877643210000000
Q ss_pred CCCCCCccEEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhc
Q 014815 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEH 298 (418)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 298 (418)
.............++|||+|||+.+|+++|+++|+.
T Consensus 61 --------------------------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 61 --------------------------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp --------------------------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred --------------------------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 000001122234589999999999999999999999
Q ss_pred cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014815 299 HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (418)
Q Consensus 299 ~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 356 (418)
||.|..|+|+++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.+++++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 37999999999999999999999999999999999998763
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=148.63 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
-..+++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
+.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=148.75 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=77.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|||..|.|++|+|.+|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999999889999999999999999999999999999999999999986
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=143.46 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=77.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEecc
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-KYELDGQALECSLAK 353 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~-g~~i~g~~l~v~~a~ 353 (418)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+|++.|+ +..|.|++|+|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999999999999999999999999999999874 567999999999998
Q ss_pred CCCCC
Q 014815 354 PQADQ 358 (418)
Q Consensus 354 ~~~~~ 358 (418)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 27
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=6.9e-21 Score=155.01 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=80.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=144.09 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=80.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+++.++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 29
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1.5e-21 Score=168.43 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=77.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccc--cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.++|||+|||+.+|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 37999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014815 353 KPQ 355 (418)
Q Consensus 353 ~~~ 355 (418)
++.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 754
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=142.24 Aligned_cols=82 Identities=32% Similarity=0.510 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC-CCccCCeEEEeccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN-NTEFKGKKIRCSTS 178 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~-~~~~~g~~i~v~~~ 178 (418)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred cccc
Q 014815 179 QAKY 182 (418)
Q Consensus 179 ~~~~ 182 (418)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=142.49 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=79.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999989999999999999999999999999999999999999997
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6554
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=140.60 Aligned_cols=79 Identities=15% Similarity=0.320 Sum_probs=74.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcccc--EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQALEC 349 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~i~g~~l~v 349 (418)
.+|||+|||+.+|+++|+++|++||. |.+|+|++++.++.+||||||+|.+.++|.+|++.|||. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 79999999999999999999999995 668999999999999999999999999999999999986 599999999
Q ss_pred EeccC
Q 014815 350 SLAKP 354 (418)
Q Consensus 350 ~~a~~ 354 (418)
.||+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99975
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=137.04 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=79.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8754
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7e-20 Score=136.92 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=81.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=1.4e-19 Score=139.20 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=82.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014815 352 AKPQADQK 359 (418)
Q Consensus 352 a~~~~~~~ 359 (418)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=140.01 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=74.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCC--eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC----ccCCeEEE
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGE--VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKKIR 174 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~----~~~g~~i~ 174 (418)
=.||||+|||+++|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .|.||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred eccccc
Q 014815 175 CSTSQA 180 (418)
Q Consensus 175 v~~~~~ 180 (418)
|.++.+
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 37
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9e-20 Score=136.26 Aligned_cols=87 Identities=23% Similarity=0.452 Sum_probs=80.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+. ||+..|.|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3455899999999999999999999999999999999999888889999999999999999998 999999999999999
Q ss_pred ccCCCCCC
Q 014815 352 AKPQADQK 359 (418)
Q Consensus 352 a~~~~~~~ 359 (418)
+.++..+.
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876543
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=138.08 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=81.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.3e-20 Score=137.83 Aligned_cols=89 Identities=24% Similarity=0.344 Sum_probs=82.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 014815 351 LAKPQADQK 359 (418)
Q Consensus 351 ~a~~~~~~~ 359 (418)
++.+...+.
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876543
No 40
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.3e-20 Score=148.66 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=84.2
Q ss_pred EEEEEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEE
Q 014815 227 FAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (418)
Q Consensus 227 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (418)
+.|++|.+...+..|+..+++......+ ...+.. +.......++|||+|||+.+|+++|+++|+.||.|..|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 5677788888888888888775432211 112222 223445568999999999999999999999999999999
Q ss_pred eccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 307 VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 307 i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.++++...+.
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99998888889999999999999999999999999999999999998865543
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=137.15 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=80.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEE-EeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
+.++|||+|||+.+++++|+++|+.||.|..| +|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999888888999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 42
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=1.5e-20 Score=177.18 Aligned_cols=86 Identities=16% Similarity=0.341 Sum_probs=80.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=137.55 Aligned_cols=87 Identities=23% Similarity=0.443 Sum_probs=81.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887654
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=6.8e-20 Score=132.22 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=77.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
.+|||+|||..+++++|+++|+.||.|..|.+++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999888888999999999999999999999999999999999999876
Q ss_pred C
Q 014815 356 A 356 (418)
Q Consensus 356 ~ 356 (418)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=137.41 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=81.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+.++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014815 353 KPQADQK 359 (418)
Q Consensus 353 ~~~~~~~ 359 (418)
++...+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=137.63 Aligned_cols=87 Identities=25% Similarity=0.418 Sum_probs=81.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34558999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=1.1e-19 Score=134.91 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=79.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
+++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999998888899999999999999999999999999999999999988
Q ss_pred CCC
Q 014815 355 QAD 357 (418)
Q Consensus 355 ~~~ 357 (418)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 754
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=133.49 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+.++|||+|||..+++++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CC
Q 014815 354 PQ 355 (418)
Q Consensus 354 ~~ 355 (418)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 74
No 49
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=4.7e-20 Score=141.90 Aligned_cols=106 Identities=18% Similarity=0.319 Sum_probs=96.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+..+++|||+|||+++|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3556799999999999999999999999999999999976 5569999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCC
Q 014815 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGP 207 (418)
Q Consensus 177 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 207 (418)
++.+.... .+++...+.++|..+|+.+|-
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 99875543 677888889999999999995
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=5e-20 Score=141.36 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=75.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
..+|||+|||+++|+++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|.+||..|||..|.|++|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 468999999999999999999999999999999988644 579999999999999999999999999999999999987
Q ss_pred CCCCC
Q 014815 355 QADQK 359 (418)
Q Consensus 355 ~~~~~ 359 (418)
+..+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 65543
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=136.26 Aligned_cols=88 Identities=23% Similarity=0.398 Sum_probs=81.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccC-CCCCCcCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA-KPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALE 348 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~i~g~~l~ 348 (418)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.+ +.++.++|||||+|.+.++|.+|+..| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445689999999999999999999999999999999999 778888999999999999999999999 99999999999
Q ss_pred EEeccCCCCC
Q 014815 349 CSLAKPQADQ 358 (418)
Q Consensus 349 v~~a~~~~~~ 358 (418)
|.++.+....
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887654
No 52
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=8.7e-20 Score=132.32 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=76.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred c
Q 014815 353 K 353 (418)
Q Consensus 353 ~ 353 (418)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-19 Score=142.70 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=81.9
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
++++...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887543
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=134.80 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=80.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
++.+++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-19 Score=136.65 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=81.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC------CceeCCe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE------KYELDGQ 345 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~------g~~i~g~ 345 (418)
..+.++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999888889999999999999999999999 9999999
Q ss_pred EEEEEeccCCCCCC
Q 014815 346 ALECSLAKPQADQK 359 (418)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (418)
+|+|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998875543
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=132.78 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.+.++|||+|||+++|+++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999988
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=8.3e-20 Score=132.43 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=133.74 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=79.9
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
....+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred EeccC
Q 014815 350 SLAKP 354 (418)
Q Consensus 350 ~~a~~ 354 (418)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.6e-19 Score=138.87 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=81.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44589999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014815 353 KPQADQK 359 (418)
Q Consensus 353 ~~~~~~~ 359 (418)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9876543
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=136.32 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=79.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|++ .|.|++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 987543
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=132.96 Aligned_cols=83 Identities=27% Similarity=0.471 Sum_probs=78.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ecc
Q 014815 351 LAK 353 (418)
Q Consensus 351 ~a~ 353 (418)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=134.08 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=78.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCC-CCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
.+.++|||+|||+.+++++|+++|+.|| |..|+|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558999999999999999999999999 999999999887 778999999999999999999 8999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 63
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.5e-19 Score=130.40 Aligned_cols=80 Identities=16% Similarity=0.404 Sum_probs=77.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
.+|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998764
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=9.4e-20 Score=149.53 Aligned_cols=130 Identities=9% Similarity=0.126 Sum_probs=80.5
Q ss_pred EEecCHHHHHHHHHHhcCCCCCCCCCCceeccCCC----------------CCCCCCCCccccEEEEcCCCCCCCHHHHH
Q 014815 230 IEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADP----------------RNVDSSGASQVKAVYVKNLPRNVTQDQLK 293 (418)
Q Consensus 230 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 293 (418)
.+|....+|..++..+.+......++.....+... ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 45666667777777776655544444443333211 01111223456889999999999999999
Q ss_pred HHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014815 294 KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (418)
Q Consensus 294 ~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 359 (418)
.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999998888889999999999999999999999999999999999998765543
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=135.56 Aligned_cols=86 Identities=29% Similarity=0.435 Sum_probs=79.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999988 566689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014815 352 AKPQADQK 359 (418)
Q Consensus 352 a~~~~~~~ 359 (418)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876544
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=134.07 Aligned_cols=85 Identities=12% Similarity=0.373 Sum_probs=79.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 667789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988654
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=135.78 Aligned_cols=85 Identities=26% Similarity=0.405 Sum_probs=78.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCC---CCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKP---GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
+.++|||+|||+.+++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 348999999999999999999999999999999998876 44678999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
++.+....
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99887654
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.7e-19 Score=133.86 Aligned_cols=85 Identities=28% Similarity=0.608 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
++++|||+|||+++++++|+++|++||.|..|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 014815 180 AKYRL 184 (418)
Q Consensus 180 ~~~~l 184 (418)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=132.19 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=76.4
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
...++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345899999999999999999 99999999999999998877 68999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 014815 349 CSLAKPQAD 357 (418)
Q Consensus 349 v~~a~~~~~ 357 (418)
|.++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-19 Score=132.63 Aligned_cols=86 Identities=26% Similarity=0.370 Sum_probs=78.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345689999999999999999999999999999999998655 479999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014815 352 AKPQADQK 359 (418)
Q Consensus 352 a~~~~~~~ 359 (418)
+++...+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99866543
No 71
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.4e-19 Score=134.09 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||+.+++++|+++|+.|| |..|+|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999988888999999999999999999 8999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9886543
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=134.10 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=79.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+++.++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 177 TSQA 180 (418)
Q Consensus 177 ~~~~ 180 (418)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8763
No 73
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=134.83 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=81.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 014815 178 SQAKYR 183 (418)
Q Consensus 178 ~~~~~~ 183 (418)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 886543
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-19 Score=132.14 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=78.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999998754 57999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99887654
No 75
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=133.71 Aligned_cols=83 Identities=33% Similarity=0.571 Sum_probs=78.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.++..++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 177 TSQ 179 (418)
Q Consensus 177 ~~~ 179 (418)
++.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=131.43 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=72.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALEC 349 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--i~g~~l~v 349 (418)
..++++|||+|||+.+|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|+..|++.. |.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345689999999999999999999999999999999864 5999999999999999999999865 78999999
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
.|++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=2.5e-19 Score=135.68 Aligned_cols=87 Identities=22% Similarity=0.387 Sum_probs=80.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQALE 348 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i---~g~~l~ 348 (418)
....++|||+|||..+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999887 899999
Q ss_pred EEeccCCCCC
Q 014815 349 CSLAKPQADQ 358 (418)
Q Consensus 349 v~~a~~~~~~ 358 (418)
|.++.+...+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887653
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=136.86 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=77.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||.++++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34899999999999999999999999999999999998 67779999999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=4.3e-20 Score=135.25 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=72.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=3.3e-19 Score=136.00 Aligned_cols=86 Identities=13% Similarity=0.224 Sum_probs=80.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 81
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=136.32 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=80.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEE--------EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 343 (418)
....++|||+|||+.+|+++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|.+||..||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 6999999888888999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCC
Q 014815 344 GQALECSLAKPQADQ 358 (418)
Q Consensus 344 g~~l~v~~a~~~~~~ 358 (418)
|++|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887553
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.4e-19 Score=125.93 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+..|||+||++.+|+++|+++|.+||+|.++++... ||||||+|.+.++|.+|++.||+..+.||+|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~------kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN------QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC------CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 478999999999999999999999999999999773 6999999999999999999999999999999999995
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.9e-20 Score=137.64 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=77.8
Q ss_pred ccEEEEcCCCC------CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC-eEE
Q 014815 275 VKAVYVKNLPR------NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QAL 347 (418)
Q Consensus 275 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g-~~l 347 (418)
.++|||+|||+ .+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 48999999999 99999999999999999999999999988899999999999999999999999999999 999
Q ss_pred EEEeccCC
Q 014815 348 ECSLAKPQ 355 (418)
Q Consensus 348 ~v~~a~~~ 355 (418)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=134.45 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.6
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
..++..++|||+|||+++|+++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEEecccc
Q 014815 168 FKGKKIRCSTSQ 179 (418)
Q Consensus 168 ~~g~~i~v~~~~ 179 (418)
|.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998763
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=133.85 Aligned_cols=84 Identities=26% Similarity=0.639 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 87653
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=133.07 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=72.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v~ 350 (418)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999986 4999999999999999999886 478999999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
+++++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876554
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.7e-20 Score=138.30 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC-eE
Q 014815 100 HGSEVYIGGIPH------DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KK 172 (418)
Q Consensus 100 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~~ 172 (418)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEecccccc
Q 014815 173 IRCSTSQAK 181 (418)
Q Consensus 173 i~v~~~~~~ 181 (418)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=4.6e-19 Score=134.01 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=79.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG---QALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g---~~l~v 349 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999988 56668999999999999999999999999998 99999
Q ss_pred EeccCCCCCC
Q 014815 350 SLAKPQADQK 359 (418)
Q Consensus 350 ~~a~~~~~~~ 359 (418)
.++.+...+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=136.49 Aligned_cols=85 Identities=24% Similarity=0.535 Sum_probs=80.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.++..++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2.8e-20 Score=136.26 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccc--cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.+|||+|||+++|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999898999999999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8654
No 91
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=135.97 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=80.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||..+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 014815 352 AKPQA 356 (418)
Q Consensus 352 a~~~~ 356 (418)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=135.65 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=80.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 014815 352 AKPQA 356 (418)
Q Consensus 352 a~~~~ 356 (418)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=131.22 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=77.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCC-cCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~-~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.++|||+|||.++|+++|+++|+.||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 37999999999999999999999999999999999887654 68999999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 94
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=135.61 Aligned_cols=84 Identities=20% Similarity=0.440 Sum_probs=80.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 95
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=133.30 Aligned_cols=83 Identities=24% Similarity=0.560 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 96
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=134.10 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.++++|||+|||+++|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8754
No 97
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=135.21 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=81.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 987654
No 98
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=132.29 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=73.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCC--CccCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~ 174 (418)
.+++.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4677899999999999999999999999999999999875 79999999999999999998864 789999999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++..+
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9998764
No 99
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=135.03 Aligned_cols=85 Identities=26% Similarity=0.612 Sum_probs=80.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+.+.++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.+.
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 98754
No 100
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.6e-19 Score=137.65 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87653
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.5e-19 Score=140.04 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=81.4
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
++.++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988754
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=133.46 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=78.0
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 342 (418)
...+.++|||+|||..+++++|+++|+.||.|.. |+|+.++.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445689999999999999999999999999999 99999988888899999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 014815 343 DGQALECSLAK 353 (418)
Q Consensus 343 ~g~~l~v~~a~ 353 (418)
.|+.|+|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999984
No 103
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.3e-19 Score=136.53 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=80.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87653
No 104
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-18 Score=132.86 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=77.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3458999999999999999999999999999999999875 666899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 865443
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=131.57 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=71.7
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 014815 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~l~v 349 (418)
.++++|||+|||+ .+|+++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|+..||+ ..|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 99999999999999999999998764 8999999999999999999885 4599999999
Q ss_pred EeccCCCC
Q 014815 350 SLAKPQAD 357 (418)
Q Consensus 350 ~~a~~~~~ 357 (418)
.+|+....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=8.7e-20 Score=157.33 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..++|||+|||+++|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=134.48 Aligned_cols=87 Identities=24% Similarity=0.450 Sum_probs=80.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 344568999999999999999999999999999999999988888899999999999999999998 9999999999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99887653
No 108
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=135.37 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 109
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=131.63 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=75.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..|.|..+. .++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999996653 3579999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 988654
No 110
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=134.65 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhc-cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEH-HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE-LDGQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~-i~g~~l~v~ 350 (418)
.+.++|||+|||+.+|+++|+++|+. ||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+.. |.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999998 77779999999999999999999999999 999999999
Q ss_pred eccCCCCCC
Q 014815 351 LAKPQADQK 359 (418)
Q Consensus 351 ~a~~~~~~~ 359 (418)
++.++..+.
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 111
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=134.73 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=79.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
.++++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 112
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=134.54 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++||+|.+|+|++++. |+++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999987 9999999999999999999997 9999999999999876
Q ss_pred cc
Q 014815 179 QA 180 (418)
Q Consensus 179 ~~ 180 (418)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 113
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=135.71 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=80.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC------CCccCC
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN------NTEFKG 170 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~------~~~~~g 170 (418)
.+...++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEecccccc
Q 014815 171 KKIRCSTSQAK 181 (418)
Q Consensus 171 ~~i~v~~~~~~ 181 (418)
+.|+|.++.++
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998765
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.4e-19 Score=129.79 Aligned_cols=81 Identities=16% Similarity=0.356 Sum_probs=77.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+|||+.+++++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999888888999999999999999999 8999999999999999987
Q ss_pred CC
Q 014815 355 QA 356 (418)
Q Consensus 355 ~~ 356 (418)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 115
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.1e-19 Score=139.48 Aligned_cols=86 Identities=33% Similarity=0.510 Sum_probs=81.3
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
..+.+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 014815 176 STSQAK 181 (418)
Q Consensus 176 ~~~~~~ 181 (418)
.++.++
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998754
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=133.53 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCC---CCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++. |+.++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred ccccccc
Q 014815 176 STSQAKY 182 (418)
Q Consensus 176 ~~~~~~~ 182 (418)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987643
No 117
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=135.02 Aligned_cols=85 Identities=27% Similarity=0.526 Sum_probs=80.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 118
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=4.9e-19 Score=138.57 Aligned_cols=87 Identities=13% Similarity=0.203 Sum_probs=80.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34468999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.+....
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 119
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.1e-19 Score=128.78 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=75.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+.+.++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999995 68889999999997
Q ss_pred cc
Q 014815 177 TS 178 (418)
Q Consensus 177 ~~ 178 (418)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=140.32 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=80.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEE--EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY----ELDGQ 345 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~i~g~ 345 (418)
....++|||+|||+.+|+++|+++|++||.|.. |+|++++.++.+||||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999977 99999998999999999999999 999999999999 99999
Q ss_pred EEEEEeccCCCCCC
Q 014815 346 ALECSLAKPQADQK 359 (418)
Q Consensus 346 ~l~v~~a~~~~~~~ 359 (418)
.|+|.++++.....
T Consensus 99 ~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 99 TINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCEECCCSCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998865443
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=127.79 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=73.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT--EKYELDGQALEC 349 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l--~g~~i~g~~l~v 349 (418)
..++++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999999876 599999999999999999987 467899999999
Q ss_pred EeccCCCCCC
Q 014815 350 SLAKPQADQK 359 (418)
Q Consensus 350 ~~a~~~~~~~ 359 (418)
.|++++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998766543
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=131.29 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=133.32 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=79.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEE-EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA----L 347 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~----l 347 (418)
...++|||+|||+.+++++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3458999999999999999999999999999 9999999988888999999999999999999999999999999 9
Q ss_pred EEEeccCCCC
Q 014815 348 ECSLAKPQAD 357 (418)
Q Consensus 348 ~v~~a~~~~~ 357 (418)
+|.++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 124
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=133.51 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=74.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+++|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 458999999999999999999999999999999999988 7779999999999999999999 89999999999999886
Q ss_pred C
Q 014815 354 P 354 (418)
Q Consensus 354 ~ 354 (418)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 125
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=130.35 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=76.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999887 66689999999999999999999999999999999999
Q ss_pred ccC
Q 014815 352 AKP 354 (418)
Q Consensus 352 a~~ 354 (418)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 126
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=130.61 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=76.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++++++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44678999999999999999999999999999999999976 99999999999999999999999999999999999998
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 127
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=128.64 Aligned_cols=79 Identities=25% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc--cCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~i~ 174 (418)
..+++++|||+|||+++|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|++.|++.. |.|++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3457899999999999999999999999999999999863 8999999999999999999999876 7899999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998764
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=133.72 Aligned_cols=86 Identities=24% Similarity=0.492 Sum_probs=80.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeC-CCCCCCcceEEEEEcCHHHHHHHHHHh-CCCccCCeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v 175 (418)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+|++.| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446799999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred cccccccc
Q 014815 176 STSQAKYR 183 (418)
Q Consensus 176 ~~~~~~~~ 183 (418)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 129
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=136.00 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=80.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998888899999999999999999997 99999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887653
No 130
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.8e-19 Score=135.71 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=77.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cc
Q 014815 352 AK 353 (418)
Q Consensus 352 a~ 353 (418)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 131
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=132.59 Aligned_cols=84 Identities=18% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee-EEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeE----
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT-EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK---- 172 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~---- 172 (418)
....++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEecccccc
Q 014815 173 IRCSTSQAK 181 (418)
Q Consensus 173 i~v~~~~~~ 181 (418)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988754
No 132
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=4.7e-19 Score=134.20 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc---CCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~~i~ 174 (418)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred eccccccc
Q 014815 175 CSTSQAKY 182 (418)
Q Consensus 175 v~~~~~~~ 182 (418)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987653
No 133
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=6.5e-19 Score=129.73 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=76.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||..+++++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44589999999999999999999999999999999874 5566899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 887543
No 134
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=3.4e-18 Score=133.24 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=80.2
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
......++|||+|||..+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999998 7777999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014815 350 SLAKPQAD 357 (418)
Q Consensus 350 ~~a~~~~~ 357 (418)
.+|.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987644
No 135
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.4e-19 Score=134.39 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=142.78 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=7.4e-19 Score=128.57 Aligned_cols=80 Identities=25% Similarity=0.524 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999999999998875
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 138
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=137.03 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=79.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999988888999999999999999999 89999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.+...+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 139
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=132.65 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=76.9
Q ss_pred ccccEEEEcCCCCCCCHHHHH---HHHhccccEEEEEeccCCCCC---CcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLK---KLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 346 (418)
...++|||+|||+.+++++|+ ++|++||.|..|.|+++..++ .++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345899999999999999999 999999999999999887643 44699999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 014815 347 LECSLAKPQA 356 (418)
Q Consensus 347 l~v~~a~~~~ 356 (418)
|+|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998875
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.2e-19 Score=144.26 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=78.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8754
No 141
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.1e-18 Score=131.99 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC---eEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG---KKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g---~~i~ 174 (418)
.+..++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|++.||+..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467999999999999999999999999999999999997 79999999999999999999999999999998 9999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++.+.
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 9998764
No 142
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=132.28 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc-cCCeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQS-IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g~~i~v 175 (418)
+...++|||+|||+++|+++|+++|++ ||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++.. |.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred cccccc
Q 014815 176 STSQAK 181 (418)
Q Consensus 176 ~~~~~~ 181 (418)
.++.++
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998754
No 143
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=128.77 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=72.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALEC 349 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~i~g~~l~v 349 (418)
..++++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999875 59999999999999999998875 4599999999
Q ss_pred EeccCCCCC
Q 014815 350 SLAKPQADQ 358 (418)
Q Consensus 350 ~~a~~~~~~ 358 (418)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876553
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=134.54 Aligned_cols=83 Identities=29% Similarity=0.576 Sum_probs=78.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+. +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 145
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=3.6e-18 Score=128.40 Aligned_cols=79 Identities=33% Similarity=0.640 Sum_probs=73.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+.++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4458999999999999999999999999999999873 69999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014815 353 KPQADQK 359 (418)
Q Consensus 353 ~~~~~~~ 359 (418)
.+.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8876544
No 146
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.2e-18 Score=132.09 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=77.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 177 TSQ 179 (418)
Q Consensus 177 ~~~ 179 (418)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 147
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=131.74 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=78.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcccc-EEEEEec-cCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v 349 (418)
+.++|||+|||+.+++++|+++|+.||. |..|.++ .++.++.++|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999998 788777889999999999999999999996 58999999999
Q ss_pred EeccCCCCC
Q 014815 350 SLAKPQADQ 358 (418)
Q Consensus 350 ~~a~~~~~~ 358 (418)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887654
No 148
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=126.45 Aligned_cols=79 Identities=27% Similarity=0.590 Sum_probs=73.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3455899999999999999999999999999999997 38999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887553
No 149
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.5e-19 Score=136.59 Aligned_cols=81 Identities=26% Similarity=0.473 Sum_probs=77.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.++.++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 014815 178 S 178 (418)
Q Consensus 178 ~ 178 (418)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-18 Score=128.82 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=73.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-----QAL 347 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g-----~~l 347 (418)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34589999999999999999999999999999999886 799999999999999999999999999 999
Q ss_pred EEEeccCCCCC
Q 014815 348 ECSLAKPQADQ 358 (418)
Q Consensus 348 ~v~~a~~~~~~ 358 (418)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999986543
No 151
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=132.43 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34458999999999999999999999999999888888888888899999999999999999999999999999999999
Q ss_pred ccCC
Q 014815 352 AKPQ 355 (418)
Q Consensus 352 a~~~ 355 (418)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9764
No 152
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=128.67 Aligned_cols=82 Identities=20% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCC-CcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE-NKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..++|||+|||+++|+++|+++|++||.|..|.++.+..++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 8999999999999999999999999999999999988
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 153
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.4e-18 Score=126.43 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=74.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. +++..|.|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999999888889999999999999999996 5888999999999986
No 154
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.2e-18 Score=122.43 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||+|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3578899999999999999999999999999999976 5999999999999999999999999999999999887
Q ss_pred c
Q 014815 179 Q 179 (418)
Q Consensus 179 ~ 179 (418)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3e-19 Score=132.38 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=76.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
++..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=131.65 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=77.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34589999999999999999999999999999999999988888999999999999999999976 58999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 157
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=134.38 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34679999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEEEeccccccc
Q 014815 170 GKKIRCSTSQAKY 182 (418)
Q Consensus 170 g~~i~v~~~~~~~ 182 (418)
|+.|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999987653
No 158
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=9.7e-19 Score=131.62 Aligned_cols=82 Identities=20% Similarity=0.506 Sum_probs=77.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 8999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 159
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=131.82 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 87643
No 160
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.5e-18 Score=131.71 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=76.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 667789999999999999999999999999999999999
Q ss_pred cc
Q 014815 352 AK 353 (418)
Q Consensus 352 a~ 353 (418)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 161
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.7e-19 Score=125.54 Aligned_cols=75 Identities=23% Similarity=0.628 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
+|||+|||+++|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++ +++..|.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999996 9999999999999864
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=133.08 Aligned_cols=84 Identities=21% Similarity=0.498 Sum_probs=79.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 163
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-18 Score=128.26 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=78.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3445899999999999999999999999999999999999888889999999999999999998 46789999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887653
No 164
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=9.7e-19 Score=132.71 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.+ +..|.|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34557799999999999999999999999999999999999999999999999999999999999865 58999999999
Q ss_pred cccccc
Q 014815 176 STSQAK 181 (418)
Q Consensus 176 ~~~~~~ 181 (418)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 988754
No 165
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=132.34 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=75.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCC-CCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK-PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
....++|||+|||+.+++++|+++|+.|| |..|+|+.++ .++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34468999999999999999999999999 9999999998 57778999999999999999999 899999999999999
Q ss_pred eccCCC
Q 014815 351 LAKPQA 356 (418)
Q Consensus 351 ~a~~~~ 356 (418)
++++..
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 166
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-19 Score=131.10 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC--ccCCeEEE
Q 014815 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~--~~~g~~i~ 174 (418)
..++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999875 689999999999999999998864 59999999
Q ss_pred eccccccccc
Q 014815 175 CSTSQAKYRL 184 (418)
Q Consensus 175 v~~~~~~~~l 184 (418)
|.++.....+
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999876554
No 167
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-19 Score=130.00 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=76.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999887764
Q ss_pred C
Q 014815 354 P 354 (418)
Q Consensus 354 ~ 354 (418)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 168
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=141.27 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=77.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccc--cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.++|||+|||+.+|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014815 353 KPQ 355 (418)
Q Consensus 353 ~~~ 355 (418)
.+.
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 764
No 169
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=133.78 Aligned_cols=82 Identities=20% Similarity=0.500 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 864
No 170
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.7e-18 Score=127.42 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 171
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=131.43 Aligned_cols=81 Identities=21% Similarity=0.518 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC-CCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...++|||+|||+++|+++|+++|++|| |..|+|+.++.+ ++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 172
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=130.94 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=73.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALEC 349 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~v 349 (418)
..++++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999986 5999999999999999999887 46899999999
Q ss_pred EeccCCCCCC
Q 014815 350 SLAKPQADQK 359 (418)
Q Consensus 350 ~~a~~~~~~~ 359 (418)
.+++++....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766543
No 173
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.3e-18 Score=127.08 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=73.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999987 56666 4556689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988644
No 174
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.88 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||..+++++|+++|++||.|..|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|+|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999988643 57999999999999999999999999999999999
Q ss_pred eccCC
Q 014815 351 LAKPQ 355 (418)
Q Consensus 351 ~a~~~ 355 (418)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 175
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=131.55 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
++..++|||+|||+++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 176
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=128.54 Aligned_cols=83 Identities=30% Similarity=0.507 Sum_probs=76.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999999864 389999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.++
T Consensus 89 ~a~~~ 93 (103)
T 2cq3_A 89 NATAR 93 (103)
T ss_dssp ECCSS
T ss_pred EcccC
Confidence 98765
No 177
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.7e-19 Score=125.01 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. ||+..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999999888889999999999999999998 9999999999999886
No 178
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=124.42 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=72.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34558999999999999999999999999999999974 5999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9887543
No 179
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=134.01 Aligned_cols=85 Identities=24% Similarity=0.485 Sum_probs=80.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014815 354 PQADQ 358 (418)
Q Consensus 354 ~~~~~ 358 (418)
+...+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87654
No 180
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.6e-18 Score=135.69 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 181
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=128.16 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .++.++|||||+|.+.++|.+||.. |+..|.||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44589999999999999999999999999987 889888 6667799999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.+...
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 976543
No 182
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-19 Score=132.19 Aligned_cols=82 Identities=28% Similarity=0.616 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
+.
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 183
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=127.52 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 99 PHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999998765 88999999999999999999999999999999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998754
No 184
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=129.83 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCC------CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 014815 274 QVKAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-A 346 (418)
Q Consensus 274 ~~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~ 346 (418)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35899999999999 789999999999999999998 35667789999999999999999999999999998 9
Q ss_pred EEEEeccCCC
Q 014815 347 LECSLAKPQA 356 (418)
Q Consensus 347 l~v~~a~~~~ 356 (418)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 185
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2e-18 Score=134.66 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=77.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||..+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999888888999999999999999999 799999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 186
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=4.3e-19 Score=131.53 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=75.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34899999999999999999999999999988888888888889999999999999999999999999999999999986
Q ss_pred C
Q 014815 354 P 354 (418)
Q Consensus 354 ~ 354 (418)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 187
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=128.52 Aligned_cols=82 Identities=20% Similarity=0.394 Sum_probs=76.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 446799999999999999999999999999999999998543 689999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 188
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=137.83 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-19 Score=125.93 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=73.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
++|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|++.++ ..+.|++|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999888 9999999999875
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=127.58 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=76.0
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
....+.++|||+|||..+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445568999999999999999999999884 5677778777888999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014815 350 SLAKPQAD 357 (418)
Q Consensus 350 ~~a~~~~~ 357 (418)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99988754
No 191
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=131.49 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCC-CCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+...++|||+|||+++|+++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44679999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 88754
No 192
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=130.65 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=76.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6899999999999999999999999999999999988643
Q ss_pred ----------------ccccccCCC
Q 014815 182 ----------------YRLFIGNIP 190 (418)
Q Consensus 182 ----------------~~l~v~~l~ 190 (418)
..+||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 457777775
No 193
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=130.21 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=74.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+++|+++|+++|++||.| .|+|+.++ ++.++|||||+|.+.++|.+||. +|+..|.||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445899999999999999999999999955 99999998 67779999999999999999995 799999999999999
Q ss_pred ccCCC
Q 014815 352 AKPQA 356 (418)
Q Consensus 352 a~~~~ 356 (418)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 194
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.3e-18 Score=139.11 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=80.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8754
No 195
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=132.77 Aligned_cols=84 Identities=15% Similarity=0.295 Sum_probs=79.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+..+++|||+|||+++++++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 196
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=125.37 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=75.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.| .|..|+|+.+ .++.++|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345899999999999999999999999 9999999999 666678999999999999999999 9999999999999999
Q ss_pred cCCC
Q 014815 353 KPQA 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 197
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=129.13 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=72.8
Q ss_pred CccccEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 014815 272 ASQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALE 348 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~i~g~~l~ 348 (418)
..++++|||+|||++ +++++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|| +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 999999999999999999999864 5999999999999999999886 4569999999
Q ss_pred EEeccCCCCCC
Q 014815 349 CSLAKPQADQK 359 (418)
Q Consensus 349 v~~a~~~~~~~ 359 (418)
|.+++.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766543
No 198
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=125.79 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=76.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++| .|..|+|+++ .+|+++|||||+|.+.++|.+|++ +++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567999999999999999999999999 9999999999 789999999999999999999998 999999999999998
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 199
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=128.26 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
++|||+|||+.+|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4799999999999999999999999999999999999887
Q ss_pred CCC
Q 014815 356 ADQ 358 (418)
Q Consensus 356 ~~~ 358 (418)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 200
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=130.53 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.| .|+|++++ +|+++|||||+|.+.++|.+|| .+|+..|.||.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 35567899999999999999999999999954 99999997 8999999999999999999999 589999999999998
Q ss_pred cccc
Q 014815 177 TSQA 180 (418)
Q Consensus 177 ~~~~ 180 (418)
.+..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7764
No 201
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=130.52 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 599999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 178 SQA 180 (418)
Q Consensus 178 ~~~ 180 (418)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 202
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=130.97 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEe-eCCCCCCCcceEEEEEcCHHHHHHHHHHhC--CCccCCeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIM-KGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i 173 (418)
..+.++|||+|||+++|+++|+++|.+||. |..|.++ .++.+|+++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456799999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred Eeccccccc
Q 014815 174 RCSTSQAKY 182 (418)
Q Consensus 174 ~v~~~~~~~ 182 (418)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 203
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=2.3e-18 Score=129.84 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
.++|||+|||+++++++|+++|+.|| .|..+.|...+ ++|||||+|.+.++|.+||..|||..|.|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~----~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD----FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS----SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC----CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 48999999999999999999999999 89999996432 57999999999999999999999999999999999997
Q ss_pred CC
Q 014815 354 PQ 355 (418)
Q Consensus 354 ~~ 355 (418)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 204
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=125.05 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCe-EE
Q 014815 101 GSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KI 173 (418)
Q Consensus 101 ~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~i 173 (418)
+++|||+|||+.+ |+++|+++|++||.|.+|+++ +.+|+++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46799999999999999999999999999999999 88
Q ss_pred Eec
Q 014815 174 RCS 176 (418)
Q Consensus 174 ~v~ 176 (418)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 205
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=129.52 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE-VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 7899999999999999999999976 9999999999998
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87654
No 206
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=137.40 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--EEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC----ccCCeE
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT----EFKGKK 172 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~----~~~g~~ 172 (418)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35689999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEeccccccc
Q 014815 173 IRCSTSQAKY 182 (418)
Q Consensus 173 i~v~~~~~~~ 182 (418)
|+|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999987653
No 207
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.5e-18 Score=128.08 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||..+++++|+.+|+.||.|..|+|+.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3589999999999999999999999999999999987 4999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014815 354 PQADQ 358 (418)
Q Consensus 354 ~~~~~ 358 (418)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87553
No 208
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.9e-19 Score=133.95 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=76.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+.+.++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||+. ++..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567999999999999999999999999999 899999998 899999999999999999999975 9999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88754
No 209
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=128.10 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=78.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
.++.++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999864 89999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 014815 178 SQAKYRLFIGN 188 (418)
Q Consensus 178 ~~~~~~l~v~~ 188 (418)
+.++..+++++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99887776654
No 210
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-18 Score=125.47 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=73.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~--g~~l~v~ 350 (418)
.+.++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..|. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 44589999999999999999999999999999999875 489999999999999999999999999 9999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
+++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988643
No 211
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=133.31 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999998865
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 212
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.5e-19 Score=134.63 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=77.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccE-EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI-TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
....++|||+|||+.+|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3445899999999999999999999999999 889999998 777799999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
++.+...
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987654
No 213
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=128.58 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=75.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|+|..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999665 56899999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 214
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.9e-19 Score=124.33 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999888889999999999999999999999 8999999999987
No 215
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=123.19 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=71.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4458999999999999999999999999999999974 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
++...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 216
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1e-18 Score=137.00 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=76.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
+...++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+|++ +++..|.||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 446789999999999999999999999999 89999999987 9999999999999999999998 999999999999
Q ss_pred eccccc
Q 014815 175 CSTSQA 180 (418)
Q Consensus 175 v~~~~~ 180 (418)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998764
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=127.41 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=77.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+. ++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999997 57789999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87653
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=134.81 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=76.8
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||..+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ec
Q 014815 351 LA 352 (418)
Q Consensus 351 ~a 352 (418)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 219
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=126.23 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=74.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
..+.++|||+|||+.+++++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999999875 49999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 988654
No 220
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=128.10 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=74.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
....+|||+|||+++|+++|+++|+.| .|..|+|+.++. +.++|||||+|.+.++|.+|| .||+..|+||.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345899999999999999999999999 899999999987 666999999999999999999 59999999999999999
Q ss_pred cCCC
Q 014815 353 KPQA 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.+..
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 7643
No 221
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=123.21 Aligned_cols=78 Identities=35% Similarity=0.559 Sum_probs=72.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhcc--ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
..+.++|||+|||+.+|+++|+++|+.| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456899999999999999999999999 999999875 489999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014815 350 SLAKPQAD 357 (418)
Q Consensus 350 ~~a~~~~~ 357 (418)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99988654
No 222
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=131.85 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=73.8
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 446899999999999999876 6999999999998864 345689999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 014815 349 CSLAKPQADQ 358 (418)
Q Consensus 349 v~~a~~~~~~ 358 (418)
|.|++.+...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999876553
No 223
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.4e-19 Score=129.99 Aligned_cols=80 Identities=29% Similarity=0.621 Sum_probs=74.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccccc
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 181 (418)
++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.+ |.+|+..||+..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998764
Q ss_pred c
Q 014815 182 Y 182 (418)
Q Consensus 182 ~ 182 (418)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 224
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=9e-18 Score=127.86 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=71.2
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
...++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999999 369999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+++...
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986544
No 225
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.4e-19 Score=129.99 Aligned_cols=81 Identities=25% Similarity=0.476 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 355 (418)
++|||+|||..+++++|+++|+.||.|..|++++++.++.++|||||+|.+.+ |.+|+..|||..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988888999999999999 99999999999999999999999876
Q ss_pred CC
Q 014815 356 AD 357 (418)
Q Consensus 356 ~~ 357 (418)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=130.82 Aligned_cols=85 Identities=21% Similarity=0.374 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHhccCCeeEEEEeeCCCCC---CCcceEEEEEcCHHHHHHHHHHhCCCccCCeE
Q 014815 99 PHGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKDSS---ENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 172 (418)
...++|||+|||+++++++|+ ++|++||.|..|+|+++..++ +++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999987654 56699999999999999999999999999999
Q ss_pred EEecccccccc
Q 014815 173 IRCSTSQAKYR 183 (418)
Q Consensus 173 i~v~~~~~~~~ 183 (418)
|+|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987754
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=129.81 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC--CCccCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~ 174 (418)
..+++++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456799999999999999999999999999999999875 8999999999999999999887 4689999999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++..+
T Consensus 101 V~~a~~k 107 (119)
T 2ad9_A 101 IQFSNHK 107 (119)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 9998754
No 228
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.6e-18 Score=133.44 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999997 999999999999
Q ss_pred eccccc
Q 014815 175 CSTSQA 180 (418)
Q Consensus 175 v~~~~~ 180 (418)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988764
No 229
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=135.64 Aligned_cols=81 Identities=28% Similarity=0.558 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 014815 178 S 178 (418)
Q Consensus 178 ~ 178 (418)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 230
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=125.10 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh--CCCccCCeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~i~v 175 (418)
.+++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.| ++..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998875 899999999999999999976 467899999999
Q ss_pred cccccc
Q 014815 176 STSQAK 181 (418)
Q Consensus 176 ~~~~~~ 181 (418)
.++..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 998754
No 231
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=131.35 Aligned_cols=81 Identities=23% Similarity=0.515 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999976 99999999999999876
Q ss_pred cc
Q 014815 181 KY 182 (418)
Q Consensus 181 ~~ 182 (418)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 232
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=133.59 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=74.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccE----EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l 347 (418)
..+.++|||+|||..+|+++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998 455554 55568999999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 014815 348 ECSLAKPQADQK 359 (418)
Q Consensus 348 ~v~~a~~~~~~~ 359 (418)
+|.++.++..+.
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 233
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.3e-17 Score=123.58 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=71.0
Q ss_pred CCccccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 271 GASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
....+++|||+|||+ .+++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999993 599999999999999999999999999999999
Q ss_pred EeccCC
Q 014815 350 SLAKPQ 355 (418)
Q Consensus 350 ~~a~~~ 355 (418)
.+++++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999875
No 234
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-18 Score=129.82 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC--CCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~ 174 (418)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446799999999998 99999999999999999999975 38999999999999999999886 4569999999
Q ss_pred ecccccccccccc
Q 014815 175 CSTSQAKYRLFIG 187 (418)
Q Consensus 175 v~~~~~~~~l~v~ 187 (418)
|.++..+..+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766544
No 235
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=129.74 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=73.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4789999999999999999999999 899999999976 999999999999999999999 6999999999999988764
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 236
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.5e-18 Score=127.74 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=72.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
......++|||+|||..+|+++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334556899999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014815 350 SLAKPQAD 357 (418)
Q Consensus 350 ~~a~~~~~ 357 (418)
.++++...
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99988654
No 237
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=128.61 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCe-E
Q 014815 100 HGSEVYIGGIPHDA------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-K 172 (418)
Q Consensus 100 ~~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~ 172 (418)
.+++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 46799999999999999999999999999999998 9
Q ss_pred EEecccccc
Q 014815 173 IRCSTSQAK 181 (418)
Q Consensus 173 i~v~~~~~~ 181 (418)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988653
No 238
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=127.84 Aligned_cols=82 Identities=13% Similarity=0.357 Sum_probs=76.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee--------CC
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--------DG 344 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i--------~g 344 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 445899999999999999999999999999999999998 777789999999999999999999999999 57
Q ss_pred eEEEEEeccCC
Q 014815 345 QALECSLAKPQ 355 (418)
Q Consensus 345 ~~l~v~~a~~~ 355 (418)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 239
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=126.07 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC--ccCCeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~--~~~g~~i~v 175 (418)
.+++++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999864 899999999999999999988654 599999999
Q ss_pred ccccccc
Q 014815 176 STSQAKY 182 (418)
Q Consensus 176 ~~~~~~~ 182 (418)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9987643
No 240
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=130.40 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
.+++++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998864 58899999999999999999999999999999999
Q ss_pred Eeccccccc
Q 014815 174 RCSTSQAKY 182 (418)
Q Consensus 174 ~v~~~~~~~ 182 (418)
+|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999988653
No 241
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=128.46 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=76.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.....++|||+|||.++|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 242
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=130.81 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=75.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |||..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34589999999999999999999999999888 667776677778999999999999999998 9999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 886543
No 243
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=6e-18 Score=137.99 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=79.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8754
No 244
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.6e-18 Score=136.76 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=123.61 Aligned_cols=73 Identities=26% Similarity=0.491 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 014815 276 KAVYVKNLPRNV------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALE 348 (418)
Q Consensus 276 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~-~l~ 348 (418)
++|||+|||..+ ++++|+++|++||.|..|.++ +.++.++|||||+|.+.++|.+|+..|||..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 35667789999999999999999999999999999 887
Q ss_pred EE
Q 014815 349 CS 350 (418)
Q Consensus 349 v~ 350 (418)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 246
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=121.00 Aligned_cols=76 Identities=24% Similarity=0.459 Sum_probs=70.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT-EKYELDGQALECS 350 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~i~g~~l~v~ 350 (418)
....++|||+|||..+++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345589999999999999999999999999999999874 599999999999999999999 9999999999999
Q ss_pred ecc
Q 014815 351 LAK 353 (418)
Q Consensus 351 ~a~ 353 (418)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 247
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=128.72 Aligned_cols=81 Identities=21% Similarity=0.456 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc--------CC
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--------KG 170 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~--------~g 170 (418)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|++.||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999 56
Q ss_pred eEEEeccccc
Q 014815 171 KKIRCSTSQA 180 (418)
Q Consensus 171 ~~i~v~~~~~ 180 (418)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7788887764
No 248
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.6e-18 Score=127.73 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
..|+..++|||+|||+++|+++|+++|++|| .|..+.|... .++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3466778999999999999999999999999 8999998643 4799999999999999999999999999999999
Q ss_pred eccccc
Q 014815 175 CSTSQA 180 (418)
Q Consensus 175 v~~~~~ 180 (418)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998864
No 249
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=6.1e-18 Score=131.90 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999999999999 7999999999999999875
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-18 Score=134.43 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcccc---EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34589999999999999999999999999 89999999887 6679999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
.++.+..
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 251
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-19 Score=139.10 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=78.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 345 (418)
+.++|||+|||+.+++++|+++|+.||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4589999999999999999999999999998 99999988888899999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 014815 346 ALECSLAKPQAD 357 (418)
Q Consensus 346 ~l~v~~a~~~~~ 357 (418)
+|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999988654
No 252
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.7e-18 Score=122.11 Aligned_cols=75 Identities=21% Similarity=0.520 Sum_probs=71.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
+|||+|||+++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999998764
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.5e-17 Score=124.57 Aligned_cols=79 Identities=32% Similarity=0.545 Sum_probs=73.3
Q ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
..++..++|||+|||.++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456679999999999999999999999999999999983 4899999999999999999999999999999999
Q ss_pred ccccc
Q 014815 176 STSQA 180 (418)
Q Consensus 176 ~~~~~ 180 (418)
.++.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98865
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=2.4e-18 Score=134.84 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcccc---EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34589999999999999999999999999 88999999988 6779999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
.++.+..
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9997543
No 255
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=130.65 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGE---VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
+...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred eccccc
Q 014815 175 CSTSQA 180 (418)
Q Consensus 175 v~~~~~ 180 (418)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988764
No 256
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=124.59 Aligned_cols=81 Identities=27% Similarity=0.451 Sum_probs=71.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34468999999999999999999999999986 566543 3479999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
++++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988643
No 257
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-18 Score=124.26 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=69.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcccc-EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK-YELDGQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g-~~i~g~~l~v~ 350 (418)
...++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34589999999999999999999999999 5556553 269999999999999999999999 99999999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
+++++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9988654
No 258
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.1e-18 Score=137.15 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=73.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+++|+++|+++|++|| |..|+|+.++. +.++|||||+|.+.++|.+|| .+|+..|.||.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 66999999987 667999999999999999999 78999999999999998
Q ss_pred cCCC
Q 014815 353 KPQA 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.+..
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7754
No 259
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-18 Score=135.43 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777889999999999999999999998 999999999999998
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 260
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=121.04 Aligned_cols=78 Identities=27% Similarity=0.507 Sum_probs=72.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567999999999999999999999999999999997 6799999999999999999999999999999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 987653
No 261
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.7e-18 Score=125.47 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=71.2
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
.+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3458999999998 99999999999999999999994 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014815 352 AKPQADQ 358 (418)
Q Consensus 352 a~~~~~~ 358 (418)
+++....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 262
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=127.43 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=71.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+.+++++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3579999999999999999999999999999999863 5999999999999999999999999999999999997
Q ss_pred CCC
Q 014815 354 PQA 356 (418)
Q Consensus 354 ~~~ 356 (418)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 263
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=8.7e-18 Score=124.95 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=74.3
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
.++++|||+|||..+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345899999999999999999 9999999999999974 334579999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 014815 349 CSLAKPQAD 357 (418)
Q Consensus 349 v~~a~~~~~ 357 (418)
|.++++...
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988654
No 264
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=123.00 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC--CeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~i~v 175 (418)
+++.++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456799999999999999999999999999999999764 789999999999999999999999999 999999
Q ss_pred cccccc
Q 014815 176 STSQAK 181 (418)
Q Consensus 176 ~~~~~~ 181 (418)
.++.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998764
No 265
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.6e-18 Score=125.67 Aligned_cols=76 Identities=21% Similarity=0.406 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||..+++++|+++|+.||.|..|++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3489999999999999999999999999999999843 5999999999999999999999999999999999998
Q ss_pred CC
Q 014815 354 PQ 355 (418)
Q Consensus 354 ~~ 355 (418)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 266
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=124.02 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=72.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 34455689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988654
No 267
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.7e-18 Score=121.08 Aligned_cols=75 Identities=15% Similarity=0.361 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998888899999999999999999994 889999999999875
No 268
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=119.86 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHh-CCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v~ 176 (418)
+...++|||+|||+++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999874 899999999999999999988 9999999999998
Q ss_pred ccc
Q 014815 177 TSQ 179 (418)
Q Consensus 177 ~~~ 179 (418)
++.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=125.08 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999977 56665 6799999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87653
No 270
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=130.86 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCe----eEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEV----TEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3457899999999999999999999999975 68999998 4899999999999999999999975 9999999999
Q ss_pred Eeccccc
Q 014815 174 RCSTSQA 180 (418)
Q Consensus 174 ~v~~~~~ 180 (418)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987653
No 271
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.9e-17 Score=127.24 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=74.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
++++|||+|||+.+|+++|+++|+.||.|..|.|+.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 458999999999999999999999999999999987643 37999999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7544
No 272
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=2.9e-17 Score=126.20 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=72.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~i~g--~~l~v~ 350 (418)
...+|||+||++.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|++.|||..|.| ++|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34688999999999999999999999999999997643 577 9999999999999999999999988 999999
Q ss_pred eccCCCCC
Q 014815 351 LAKPQADQ 358 (418)
Q Consensus 351 ~a~~~~~~ 358 (418)
|+++..-.
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99987543
No 273
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=123.34 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=71.0
Q ss_pred ccccEEEE--cCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 014815 273 SQVKAVYV--KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL-----DGQ 345 (418)
Q Consensus 273 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i-----~g~ 345 (418)
.++++||| +||++.+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34588999 679999999999999999999999998753 59999999999999999999999988 689
Q ss_pred EEEEEeccCCCC
Q 014815 346 ALECSLAKPQAD 357 (418)
Q Consensus 346 ~l~v~~a~~~~~ 357 (418)
+|.|.|+.....
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999986543
No 274
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-18 Score=130.39 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999988 677777889999999999999999999998 999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8754
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=115.42 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=66.8
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHHhcc-ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 275 VKA-VYVKNLPRNVTQDQ----LKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 275 ~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
+.+ |||+|||+.+++++ |+++|++| |.|..|. .|+|||.|.+.++|.+|++.|||..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 355 99999999999887 55899999 5999982 28999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 014815 349 CSLAKPQADQK 359 (418)
Q Consensus 349 v~~a~~~~~~~ 359 (418)
|.||+.+..--
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99999876643
No 276
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=128.97 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=75.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcccc---EEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGR---ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|+|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34589999999999999999999999998 89999999988 6679999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998654
No 277
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.7e-18 Score=125.78 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=71.9
Q ss_pred CEEEEeCC----CCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcC----HHH----HHHHHH--HhCCCc
Q 014815 102 SEVYIGGI----PHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN----VEL----ASKAID--KLNNTE 167 (418)
Q Consensus 102 ~~l~V~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~e~----A~~A~~--~l~~~~ 167 (418)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889988 789999
Q ss_pred cCCeEEEeccccc
Q 014815 168 FKGKKIRCSTSQA 180 (418)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (418)
|.|++|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987654
No 278
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=124.65 Aligned_cols=81 Identities=28% Similarity=0.554 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556799999999999999999999999999999999876 8899999999999999999999999999999999
Q ss_pred ccccccc
Q 014815 177 TSQAKYR 183 (418)
Q Consensus 177 ~~~~~~~ 183 (418)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9886543
No 279
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.6e-17 Score=120.85 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++| .|..|++. +++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999985 46999999999999999999999999999999999999
Q ss_pred cccccccccC
Q 014815 179 QAKYRLFIGN 188 (418)
Q Consensus 179 ~~~~~l~v~~ 188 (418)
.....+.+.|
T Consensus 76 ~~~~~~~~~n 85 (88)
T 1wg1_A 76 PTDALLCSGP 85 (88)
T ss_dssp CCCCCCSCCC
T ss_pred CCCceEecCC
Confidence 8877776665
No 280
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.3e-17 Score=120.73 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=71.2
Q ss_pred cCCCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 96 ALPPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
..++.+++|||+|||+ ++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++..+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9988754
No 281
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=9.1e-18 Score=129.30 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--EEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
+...++|||+|||+++|+++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999999999 577 999999987 9999999999999999999997 5789999999999
Q ss_pred ccccc
Q 014815 176 STSQA 180 (418)
Q Consensus 176 ~~~~~ 180 (418)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 282
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.1e-17 Score=124.39 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLR----DFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
.+++++|||+|||+++++++|+ ++|++||.|..|.+++ +|.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999999874 47789999999999999999999999999999999
Q ss_pred Eeccccccc
Q 014815 174 RCSTSQAKY 182 (418)
Q Consensus 174 ~v~~~~~~~ 182 (418)
+|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999988654
No 283
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=123.90 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC-----eE
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-----KK 172 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-----~~ 172 (418)
+...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999875 899999999999999999999999999 99
Q ss_pred EEeccccccc
Q 014815 173 IRCSTSQAKY 182 (418)
Q Consensus 173 i~v~~~~~~~ 182 (418)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 284
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-18 Score=132.60 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=75.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455899999999999999999999999999886666666677779999999999999999999 999999999999999
Q ss_pred ccCCC
Q 014815 352 AKPQA 356 (418)
Q Consensus 352 a~~~~ 356 (418)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 285
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=5.1e-17 Score=129.65 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=72.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g--~~l~v~ 350 (418)
....+|||+||++.+|+++|+++|++||.|.+|+|...+ ++|||||+|.+.++|.+|++.|||..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 334789999999999999999999999999999997543 36899999999999999999999999965 999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
|++++..
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9998753
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=123.80 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=76.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|+.|+ .|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999873 68888888899999999999999999999999999999999999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987653
No 287
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=114.68 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHhcc-CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeE
Q 014815 98 PPHGSEVYIGGIPHDASEHD----LRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 172 (418)
|+..++|||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44445599999999999988 55899999 599988 23 99999999999999999999999999999
Q ss_pred EEecccccccccccc
Q 014815 173 IRCSTSQAKYRLFIG 187 (418)
Q Consensus 173 i~v~~~~~~~~l~v~ 187 (418)
|+|.++..++.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999987765543
No 288
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=117.69 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=70.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+.++|||+|| .+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999996 899999999999999999999953 3699999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014815 353 KPQADQ 358 (418)
Q Consensus 353 ~~~~~~ 358 (418)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 886543
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=3.5e-17 Score=135.11 Aligned_cols=84 Identities=15% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+..+++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87643
No 290
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=121.89 Aligned_cols=79 Identities=23% Similarity=0.465 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
++..++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 45799999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 291
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.8e-18 Score=133.53 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|| .+++..|.||.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 77999999976 999999999999999999999 7999999999999988
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 292
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-18 Score=130.45 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+.+.++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34679999999999999999999999999984332222222688999999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 87643
No 293
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=124.05 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCC----HHH----HHHHHH--HhCCce
Q 014815 276 KAVYVKNL----PRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE----RSS----AMKALK--NTEKYE 341 (418)
Q Consensus 276 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~----~~~----A~~A~~--~l~g~~ 341 (418)
..|||+|| |+.+++..|+.+|+.||.|.+|.++.|+.++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred eCCeEEEEEeccCC
Q 014815 342 LDGQALECSLAKPQ 355 (418)
Q Consensus 342 i~g~~l~v~~a~~~ 355 (418)
|+|++|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987653
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=120.07 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=72.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEE-EeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV-VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
..++|||+|||+.+++++|+++|+.||.|..| .|+.++.+ +.|||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999 48777644 44999999999999999999999999999999999
Q ss_pred cCCC
Q 014815 353 KPQA 356 (418)
Q Consensus 353 ~~~~ 356 (418)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 295
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=118.59 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 355679999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997653
No 296
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=125.53 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+++|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|++.||+..|.|++|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999875 48899999999999999999999999999999999986
Q ss_pred c
Q 014815 180 A 180 (418)
Q Consensus 180 ~ 180 (418)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 297
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.3e-16 Score=122.26 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRI-GFVHFAERSSAMKALKNTEKYELDG--QALECS 350 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~i~g--~~l~v~ 350 (418)
....|||+||++.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999999752 286 9999999999999999999999987 699999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
+|++..-
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998753
No 298
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=118.31 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=71.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355779999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.+.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98764
No 299
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.6e-17 Score=122.55 Aligned_cols=77 Identities=27% Similarity=0.519 Sum_probs=71.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35567999999999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 98764
No 300
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.1e-19 Score=134.81 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTE--------VRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 170 (418)
.+.++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred eEEEecccccc
Q 014815 171 KKIRCSTSQAK 181 (418)
Q Consensus 171 ~~i~v~~~~~~ 181 (418)
+.|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998764
No 301
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.6e-17 Score=127.93 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=72.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEE--EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. +.++|||||+|.+.++|.+||.. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 345899999999999999999999999 566 999999988 66799999999999999999984 7799999999999
Q ss_pred eccCCC
Q 014815 351 LAKPQA 356 (418)
Q Consensus 351 ~a~~~~ 356 (418)
++.+..
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=9.3e-18 Score=125.98 Aligned_cols=79 Identities=30% Similarity=0.582 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+++|+++|+++|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|++ ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999997 9999999999998876
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 303
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.9e-17 Score=118.29 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=68.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+.+|+++|+.+|+.||.|..| +.++.++. ||||+|.+.++|.+|+. ||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 34443332 99999999999999999 99999999999999887
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=5e-17 Score=124.51 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA-----LEC 349 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~-----l~v 349 (418)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 489999999999999999999999999999999876 79999999999999999999999999988 777
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
..+.+..
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7776643
No 305
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=2.5e-17 Score=123.60 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 77779999999999999999998 999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 306
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=9.1e-17 Score=116.86 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
.++|||+|||+.+++++|+++|++| .|..|++. .++|||||+|.+.++|.+|+..|||..|.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4789999999999999999999999 99999985 3479999999999999999999999999999999999976
Q ss_pred CC
Q 014815 355 QA 356 (418)
Q Consensus 355 ~~ 356 (418)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 307
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=120.13 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 98 PPHGSEVYIGGIPH-DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 98 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.++.++|||+|||+ ++|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999998 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 88654
No 308
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=116.01 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=62.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE--LDGQALECS 350 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--i~g~~l~v~ 350 (418)
.+..+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ |++.. +.|++|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 34589999999999999999999999999999999985 48999999999999983 45544 559999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987654
No 309
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.2e-17 Score=133.62 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=79.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 67779999999999999999999999999999999999
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
+|.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987543
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=9.5e-17 Score=137.65 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=78.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34589999999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76543
No 311
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1e-16 Score=120.36 Aligned_cols=76 Identities=18% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..|+++ ++||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 45999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.+.
T Consensus 80 a~~~ 83 (103)
T 2dgu_A 80 AKPP 83 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=122.14 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999988766 345889999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=127.75 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=72.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccE----EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRI----TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
.++|||+|||+++|+++|+++|++||.| ..|+|+.+. ++.++|||||+|.+.++|.+||.. |+..|.||.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 3799999999999999999999999975 689999885 566799999999999999999996 9999999999999
Q ss_pred eccCCC
Q 014815 351 LAKPQA 356 (418)
Q Consensus 351 ~a~~~~ 356 (418)
.+.+..
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987644
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.7e-16 Score=118.69 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=72.5
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHHhccccEEEEEeccCCCC-CCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014815 274 QVKAVYVKNLPR-----NVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (418)
Q Consensus 274 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l 347 (418)
++++|+|+||.. +.++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999963 2378999999999999999999988653 5678999999999999999999999999999999
Q ss_pred EEEeccCC
Q 014815 348 ECSLAKPQ 355 (418)
Q Consensus 348 ~v~~a~~~ 355 (418)
+|.++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99999763
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=121.05 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=69.0
Q ss_pred cCCCCCCEEEE--eCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc-----
Q 014815 96 ALPPHGSEVYI--GGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF----- 168 (418)
Q Consensus 96 ~~~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~----- 168 (418)
....+.++||| +||++++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 779999999999999999999999988642 79999999999999999999999988
Q ss_pred CCeEEEecccc
Q 014815 169 KGKKIRCSTSQ 179 (418)
Q Consensus 169 ~g~~i~v~~~~ 179 (418)
.|++|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68899888764
No 316
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=9.8e-17 Score=129.42 Aligned_cols=79 Identities=24% Similarity=0.466 Sum_probs=74.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999886 589999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 317
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=116.81 Aligned_cols=77 Identities=21% Similarity=0.427 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+|++ |++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 55655565 99999999999999998 9999999999999988
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 318
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=119.39 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV-RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...++|||+|||+++|+++|+.+|++||.|..| .|+.++.++ .|||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 488876544 399999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 319
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=133.21 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=71.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEE--------EeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKV--------VVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--------~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
.++++|||+|||+.+|+++|+.+|+.||.|..+ ++. .++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345899999999999999999999999988764 322 245568999999999999999999999999999
Q ss_pred eEEEEEeccCCCCC
Q 014815 345 QALECSLAKPQADQ 358 (418)
Q Consensus 345 ~~l~v~~a~~~~~~ 358 (418)
+.|+|.++++...+
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999876543
No 320
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=122.15 Aligned_cols=77 Identities=27% Similarity=0.457 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCC---CCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 7999999999999999999999884 256666665
Q ss_pred ccc
Q 014815 176 STS 178 (418)
Q Consensus 176 ~~~ 178 (418)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 321
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=117.13 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSI--GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
...++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999999874 6799999999999999999999999999999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 987653
No 322
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=118.09 Aligned_cols=78 Identities=24% Similarity=0.425 Sum_probs=70.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCC-CccCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN-TEFKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~-~~~~g~~i~ 174 (418)
.+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6666653 388999999999999999999999 999999999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++.++
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9998764
No 323
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=2.5e-16 Score=129.86 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=78.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
+++|||+|||+++++++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..|+|..|.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 48999999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 014815 355 QAD 357 (418)
Q Consensus 355 ~~~ 357 (418)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 324
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3.1e-16 Score=129.13 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=78.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 354 (418)
+++|||+|||+.+++++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 37999999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 014815 355 QAD 357 (418)
Q Consensus 355 ~~~ 357 (418)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 325
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=116.57 Aligned_cols=78 Identities=23% Similarity=0.425 Sum_probs=66.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..++|||+|||+.+++++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 3489999999999999999999999999999999875 479999999999999765321 345689999999998
Q ss_pred CCCCC
Q 014815 354 PQADQ 358 (418)
Q Consensus 354 ~~~~~ 358 (418)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 326
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.3e-16 Score=128.86 Aligned_cols=82 Identities=16% Similarity=0.400 Sum_probs=78.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
....++|||+|||+++|+++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 014815 178 SQ 179 (418)
Q Consensus 178 ~~ 179 (418)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=4.2e-16 Score=116.52 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCC-----CCCHHHHHHHHhccCCeeEEEEeeCCCC-CCCcceEEEEEcCHHHHHHHHHHhCCCccCCe
Q 014815 98 PPHGSEVYIGGIPH-----DASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDKLNNTEFKGK 171 (418)
Q Consensus 98 ~~~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 171 (418)
+.++++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34679999999963 2478999999999999999999998764 68999999999999999999999999999999
Q ss_pred EEEeccccc
Q 014815 172 KIRCSTSQA 180 (418)
Q Consensus 172 ~i~v~~~~~ 180 (418)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 328
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=1.8e-16 Score=120.68 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
...++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999 999999999999999999998 488999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 329
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=4e-16 Score=132.31 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=72.2
Q ss_pred ccEEEEcCCC-CCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+++|||+||| ..+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+||+.|||..|.|++|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4799999999 899999999999999999999998864 6999999999999999999999999999999999997
Q ss_pred CCC
Q 014815 354 PQA 356 (418)
Q Consensus 354 ~~~ 356 (418)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=130.82 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE--------EEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEV--------RIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v--------~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
..++++|||+|||+++|+++|+.+|++||.|..+ ++. .+|+++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999998764 333 35889999999999999999999999999999
Q ss_pred CeEEEecccccc
Q 014815 170 GKKIRCSTSQAK 181 (418)
Q Consensus 170 g~~i~v~~~~~~ 181 (418)
|+.|+|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998653
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=5.3e-16 Score=112.70 Aligned_cols=72 Identities=19% Similarity=0.433 Sum_probs=67.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcc----c-------cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHH----G-------RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
.+.++|||+|||+.+++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 345899999999999999999999999 8 8999999876 499999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 014815 342 LDGQALECSL 351 (418)
Q Consensus 342 i~g~~l~v~~ 351 (418)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 332
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.8e-16 Score=129.29 Aligned_cols=80 Identities=23% Similarity=0.552 Sum_probs=76.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||+++|+++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999886
No 333
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.9e-16 Score=113.41 Aligned_cols=76 Identities=34% Similarity=0.553 Sum_probs=63.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc--cCCeEEE
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIR 174 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~i~ 174 (418)
.++..++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3556799999999999999999999999999999999875 69999999999999983 45554 4699999
Q ss_pred ecccccc
Q 014815 175 CSTSQAK 181 (418)
Q Consensus 175 v~~~~~~ 181 (418)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988754
No 334
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=7.2e-16 Score=129.19 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceeccCCCCCCCCC-----CCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEecc
Q 014815 235 HKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPP 309 (418)
Q Consensus 235 ~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (418)
......|+.......+.+......+........+.. .....++|||+|||+.+|+++|+++|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 345555555543334444444444444322221111 123468999999999999999999999999999999999
Q ss_pred CCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 310 ~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
+.. +.++|||||+|.+.++|.+|+..++ ..|+|++|.|.++..-..
T Consensus 144 ~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 144 TLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp CTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC--
T ss_pred CCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHH
Confidence 875 5568999999999999999998655 589999999999876543
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.7e-16 Score=113.51 Aligned_cols=71 Identities=30% Similarity=0.622 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI----G-------EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
..++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998764 899999999999999999 9999999
Q ss_pred CCeEEEecc
Q 014815 169 KGKKIRCST 177 (418)
Q Consensus 169 ~g~~i~v~~ 177 (418)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999864
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=3.4e-16 Score=147.54 Aligned_cols=82 Identities=15% Similarity=0.375 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
..
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.4e-16 Score=113.72 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 99999999999999999999984 4589999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 178 SQAKY 182 (418)
Q Consensus 178 ~~~~~ 182 (418)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87653
No 338
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-16 Score=117.57 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=70.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCC---CCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG---QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 888888776 5779999999999999999999985 4788888887
Q ss_pred eccCCCC
Q 014815 351 LAKPQAD 357 (418)
Q Consensus 351 ~a~~~~~ 357 (418)
.+.+...
T Consensus 84 ~~~~~~~ 90 (114)
T 2dnl_A 84 SSPTIKD 90 (114)
T ss_dssp CCSSSCS
T ss_pred cCCCcCC
Confidence 6655443
No 339
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=6.7e-15 Score=132.05 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=73.7
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRNVTQDQLK----KLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
.++++|||+|||+.+|+++|+ ++|+.||.|..|+|.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 446899999999999999977 8999999999999987 344689999999999999999999999999999999
Q ss_pred EEeccCCC
Q 014815 349 CSLAKPQA 356 (418)
Q Consensus 349 v~~a~~~~ 356 (418)
|.+++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997655
No 340
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.2e-16 Score=123.00 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC--eEEEeccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~ 178 (418)
-.+|||+|||+.+|+++|+++|++||.|.+|+|+... ++|||||+|.+.++|.+|++.|||..|.| ++|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3568999999999999999999999999999997542 57899999999999999999999999965 99999999
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.++
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 341
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=7.9e-16 Score=132.42 Aligned_cols=83 Identities=14% Similarity=0.454 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
...++|||+|||.++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014815 179 QAK 181 (418)
Q Consensus 179 ~~~ 181 (418)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.8e-16 Score=119.59 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998433
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.1e-15 Score=117.45 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcce-EEEEEcCHHHHHHHHHHhCCCccCC--eEEEec
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCS 176 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~ 176 (418)
.--.|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456789999999999999999999999999998864 2677 9999999999999999999999988 999999
Q ss_pred cccccc
Q 014815 177 TSQAKY 182 (418)
Q Consensus 177 ~~~~~~ 182 (418)
++.+..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998653
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=8.5e-16 Score=130.32 Aligned_cols=84 Identities=21% Similarity=0.525 Sum_probs=80.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecc
Q 014815 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 177 (418)
+...++|||+|||+++|+++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 014815 178 SQAK 181 (418)
Q Consensus 178 ~~~~ 181 (418)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 345
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.2e-15 Score=129.07 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=77.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014815 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~ 351 (418)
....++|||+|||+.+|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44568999999999999999999999999999999999998888899999999999999999985 89999999999999
Q ss_pred ccCCCC
Q 014815 352 AKPQAD 357 (418)
Q Consensus 352 a~~~~~ 357 (418)
+.+...
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 987644
No 346
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.6e-16 Score=128.83 Aligned_cols=80 Identities=23% Similarity=0.570 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5799999999999999999999999999999999999899999999999999999999997 899999999999999876
Q ss_pred c
Q 014815 181 K 181 (418)
Q Consensus 181 ~ 181 (418)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 347
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=2.1e-15 Score=112.80 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=71.6
Q ss_pred cccEEEEcCC--CCCCC--------HHHHHHHHhccccEEEEEeccCCCC--CCcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 274 QVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 274 ~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
++++|+|.|+ |..+. .++|++.|++||.|.+|+|++++.+ ..++|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5689999999 33443 3789999999999999999998765 3568999999999999999999999999
Q ss_pred eCCeEEEEEeccCC
Q 014815 342 LDGQALECSLAKPQ 355 (418)
Q Consensus 342 i~g~~l~v~~a~~~ 355 (418)
|+||.|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.6e-15 Score=115.00 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcce-EEEEEcCHHHHHHHHHHhCCCccCC--eEEEecccc
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGF-AFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTSQ 179 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~~ 179 (418)
.|||+|||+.+|+++|+.+|++||.|..|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 386 9999999999999999999999987 699999998
Q ss_pred ccc
Q 014815 180 AKY 182 (418)
Q Consensus 180 ~~~ 182 (418)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.5e-15 Score=129.66 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=74.9
Q ss_pred CCCceeccCCCCCCCCCCCccccEEEEcCCCCCC---------CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEe
Q 014815 254 TNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNV---------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHF 324 (418)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F 324 (418)
++.....+..............++|||+||+..+ ++++|+.+|++||.|..|+|+.. +|||||+|
T Consensus 113 Gr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F 186 (240)
T 3u1l_A 113 GREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKF 186 (240)
T ss_dssp SSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEE
T ss_pred cchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEe
Confidence 4443333333333333344567999999999998 79999999999999999999864 59999999
Q ss_pred CCHHHHHHHHHHhCCcee------------CCeEEEEEeccCCCC
Q 014815 325 AERSSAMKALKNTEKYEL------------DGQALECSLAKPQAD 357 (418)
Q Consensus 325 ~~~~~A~~A~~~l~g~~i------------~g~~l~v~~a~~~~~ 357 (418)
.+.++|+.|+++|+|..| .|+.|.|.||+....
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999999999 899999999987544
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.1e-15 Score=117.72 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a 352 (418)
...++|||+|| ++|+++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34589999996 699999999999999999999963 3699999999999999999999999999999999999
Q ss_pred cCCCC
Q 014815 353 KPQAD 357 (418)
Q Consensus 353 ~~~~~ 357 (418)
++...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.5e-15 Score=112.55 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=70.5
Q ss_pred CccccEEEEcCCCCCCC-----------HHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCc
Q 014815 272 ASQVKAVYVKNLPRNVT-----------QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (418)
Q Consensus 272 ~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 340 (418)
..++++|+|+||..... +++|+++|++||.|..|.| .++. ++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999944332 5899999999999999976 4332 5799999999999999999999999
Q ss_pred eeCCeEEEEEeccCCCCC
Q 014815 341 ELDGQALECSLAKPQADQ 358 (418)
Q Consensus 341 ~i~g~~l~v~~a~~~~~~ 358 (418)
.|.|++|+|.++.+....
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999886553
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.8e-15 Score=115.52 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=70.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
.+...++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3557899999996 79999999999999999999986 358999999999999999999999999999999999
Q ss_pred ccccc
Q 014815 177 TSQAK 181 (418)
Q Consensus 177 ~~~~~ 181 (418)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 98764
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.2e-16 Score=112.15 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=66.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccc
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 178 (418)
..+++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35799999999999999999999999999999999865 68999999999999986542 234458999999988
Q ss_pred cccc
Q 014815 179 QAKY 182 (418)
Q Consensus 179 ~~~~ 182 (418)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.5e-15 Score=125.02 Aligned_cols=78 Identities=24% Similarity=0.450 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEeccccc
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 180 (418)
.++|||+|||+++|+++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999986 4899999999999999999999754 5689999999987764
No 355
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=5.2e-15 Score=122.75 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC---CeEEEe
Q 014815 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKIRC 175 (418)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i~v 175 (418)
...++|||+|||+++|+++|+++|++||.|..|+++++. +|.++|||||+|.+.++|.+|++.|||..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999986 5999999999999999999999999998776 499999
Q ss_pred cccc
Q 014815 176 STSQ 179 (418)
Q Consensus 176 ~~~~ 179 (418)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 8863
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=110.02 Aligned_cols=84 Identities=25% Similarity=0.372 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEeCCCCCCC-----------HHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC
Q 014815 96 ALPPHGSEVYIGGIPHDAS-----------EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (418)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~ 164 (418)
..|.++++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3466789999999954432 5899999999999999966 543 379999999999999999999999
Q ss_pred CCccCCeEEEecccccccc
Q 014815 165 NTEFKGKKIRCSTSQAKYR 183 (418)
Q Consensus 165 ~~~~~g~~i~v~~~~~~~~ 183 (418)
|..|.|++|+|.++.+...
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999876544
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=1.1e-14 Score=126.21 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=75.1
Q ss_pred CCccccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014815 271 GASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (418)
Q Consensus 271 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v 349 (418)
...++++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344568999999999 99999999999999999999999876 689999999999999999999999999999999
Q ss_pred EeccCCC
Q 014815 350 SLAKPQA 356 (418)
Q Consensus 350 ~~a~~~~ 356 (418)
.++.+..
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998664
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.3e-14 Score=128.43 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=74.2
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 269 SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 269 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
.......++|||+|||+++|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344566789999999999999999999999999999999765 49999999999999999999999999999999
Q ss_pred EEeccCC
Q 014815 349 CSLAKPQ 355 (418)
Q Consensus 349 v~~a~~~ 355 (418)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9999763
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=5.8e-15 Score=126.13 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 98 PPHGSEVYIGGIPHDA---------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
....++|||+|||..+ ++++|+.+|++||.|.+|+|+.+ +|||||+|.+.++|..|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ------------CCeEEEecccccc
Q 014815 169 ------------KGKKIRCSTSQAK 181 (418)
Q Consensus 169 ------------~g~~i~v~~~~~~ 181 (418)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.2e-14 Score=108.55 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHhccCCeeEEEEeeCCCC--CCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 100 HGSEVYIGGI--PHDAS--------EHDLRDFCQSIGEVTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 100 ~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
+++.|.|.|+ |.++. +++|++.|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 4689999999999999999998765 4689999999999999999999999999
Q ss_pred cCCeEEEeccccc
Q 014815 168 FKGKKIRCSTSQA 180 (418)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (418)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=9.6e-15 Score=111.21 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=70.6
Q ss_pred cccEEEEcCCC--CCC---CHHHHHHHHhccccEEEEEeccCCCC----CCcCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014815 274 QVKAVYVKNLP--RNV---TQDQLKKLFEHHGRITKVVVPPAKPG----QEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (418)
Q Consensus 274 ~~~~l~V~nLp--~~~---t~~~L~~~F~~~G~v~~v~i~~~~~~----~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g 344 (418)
++++|+|+|+- ..+ .+++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35899999993 222 36899999999999999999988653 4567999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 014815 345 QALECSLAKP 354 (418)
Q Consensus 345 ~~l~v~~a~~ 354 (418)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=8.3e-15 Score=121.55 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEecccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 179 (418)
..++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988766 4678999999999999999999999999999999999999987
Q ss_pred cc
Q 014815 180 AK 181 (418)
Q Consensus 180 ~~ 181 (418)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.5e-15 Score=110.86 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014815 280 VKNLPRNVTQDQLKKLF------------EHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (418)
Q Consensus 280 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l 347 (418)
+.|||+.+++++|++.| ++||.|.+|.|+++.. +.++|||||+|.+.++|.+|+..|||+.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777776666 9999999999998876 4668999999999999999999999999999999
Q ss_pred EEEec
Q 014815 348 ECSLA 352 (418)
Q Consensus 348 ~v~~a 352 (418)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=121.06 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=73.2
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 275 VKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 275 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
+++|||+|||+ .+++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 37999999999 99999999999999999999999876 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 014815 354 PQAD 357 (418)
Q Consensus 354 ~~~~ 357 (418)
+...
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7643
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=3.3e-14 Score=108.25 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=72.2
Q ss_pred CCCCEEEEeCCCC--C---CCHHHHHHHHhccCCeeEEEEeeCCC----CCCCcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 99 PHGSEVYIGGIPH--D---ASEHDLRDFCQSIGEVTEVRIMKGKD----SSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 99 ~~~~~l~V~nLp~--~---~t~~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
+++++|+|.|+-. + -.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3689999999942 2 24689999999999999999999865 4677899999999999999999999999999
Q ss_pred CeEEEeccccc
Q 014815 170 GKKIRCSTSQA 180 (418)
Q Consensus 170 g~~i~v~~~~~ 180 (418)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998764
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-13 Score=100.12 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014815 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (418)
Q Consensus 285 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 357 (418)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 3489999999999999999998654 6899999999987654
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.1e-14 Score=108.70 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=62.5
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 106 IGGIPHDASEHDLRDFC------------QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 106 V~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
+.|||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777776665 9999999999998764 7899999999999999999999999999999999
Q ss_pred Eeccc
Q 014815 174 RCSTS 178 (418)
Q Consensus 174 ~v~~~ 178 (418)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=1.8e-13 Score=103.29 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=67.6
Q ss_pred ccccEEEEcCCCCCC----------CHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCcee
Q 014815 273 SQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i 342 (418)
.++++|.|.|+-... .+++|++.|++||.|.+|.|.++. ++|||||+|.+.++|.+|+..|||+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456899999993221 236889999999999999997764 379999999999999999999999999
Q ss_pred CCeEEEEEeccCC
Q 014815 343 DGQALECSLAKPQ 355 (418)
Q Consensus 343 ~g~~l~v~~a~~~ 355 (418)
+||.|+|.|+...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999999643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=7.9e-13 Score=119.22 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.6
Q ss_pred CccccEEEEcC--CCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 014815 272 ASQVKAVYVKN--LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQ- 345 (418)
Q Consensus 272 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~---g~- 345 (418)
..++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44568999999 578999999999999999999998865 2699999999999999999999998883 45
Q ss_pred -EEEEEecc
Q 014815 346 -ALECSLAK 353 (418)
Q Consensus 346 -~l~v~~a~ 353 (418)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888885
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-12 Score=94.27 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEE
Q 014815 101 GSEVYIGGIP-------HDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (418)
Q Consensus 101 ~~~l~V~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 173 (418)
..+|.|.-.+ ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|..|++.++ .+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4677777655 458999999999999999999998 3579999999999999999998744 4679999
Q ss_pred Eecccccc
Q 014815 174 RCSTSQAK 181 (418)
Q Consensus 174 ~v~~~~~~ 181 (418)
+|.++...
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998754
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=2.3e-12 Score=97.26 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=67.8
Q ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 98 PPHGSEVYIGGIPHDA----------SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 98 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
|.++++|.|.|+=... .+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578899999984322 245789999999999999997653 48999999999999999999999999
Q ss_pred cCCeEEEeccccc
Q 014815 168 FKGKKIRCSTSQA 180 (418)
Q Consensus 168 ~~g~~i~v~~~~~ 180 (418)
+.||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998753
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=1.7e-12 Score=117.05 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=66.4
Q ss_pred cCCCCCCEEEEeC--CCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCcc---CC
Q 014815 96 ALPPHGSEVYIGG--IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KG 170 (418)
Q Consensus 96 ~~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g 170 (418)
....++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||..+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3356788999999 578999999999999999999988754 489999999999999999999999987 34
Q ss_pred e--EEEecccc
Q 014815 171 K--KIRCSTSQ 179 (418)
Q Consensus 171 ~--~i~v~~~~ 179 (418)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 56666654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=86.65 Aligned_cols=73 Identities=26% Similarity=0.313 Sum_probs=63.0
Q ss_pred cccEEEEcCCCC----CCCH----HHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014815 274 QVKAVYVKNLPR----NVTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (418)
Q Consensus 274 ~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~ 345 (418)
+..+|+|.-++. .+-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |||..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 346888887762 3333 6789999999999999999864 8999999999999998 999999999
Q ss_pred EEEEEeccCC
Q 014815 346 ALECSLAKPQ 355 (418)
Q Consensus 346 ~l~v~~a~~~ 355 (418)
.|+|.++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.8e-11 Score=92.23 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=68.2
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 014815 273 SQVKAVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAE-RSSAMKALKNTE--KYELDGQALE 348 (418)
Q Consensus 273 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~-~~~A~~A~~~l~--g~~i~g~~l~ 348 (418)
...+.|+|+||+.. ++.++|+++|+.||.|.+|.+.++. ..|||+|.+ ..+|..|+..|| +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34589999999999 9999999999999999999999886 479999999 899999999995 7889999999
Q ss_pred EEecc
Q 014815 349 CSLAK 353 (418)
Q Consensus 349 v~~a~ 353 (418)
+.+..
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98764
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.1e-11 Score=84.73 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=63.6
Q ss_pred CCCCCEEEEeCCCC----CCCH----HHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 98 PPHGSEVYIGGIPH----DASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 98 ~~~~~~l~V~nLp~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
-|+..||+|.-+|. .+-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 35678899988772 3333 6789999999999999999873 8999999999999997 9999999
Q ss_pred CeEEEeccccc
Q 014815 170 GKKIRCSTSQA 180 (418)
Q Consensus 170 g~~i~v~~~~~ 180 (418)
||.|+|..+.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999998764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.9e-11 Score=89.39 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcC-HHHHHHHHHHhC--CCccCCeEEE
Q 014815 99 PHGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRN-VELASKAIDKLN--NTEFKGKKIR 174 (418)
Q Consensus 99 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~e~A~~A~~~l~--~~~~~g~~i~ 174 (418)
+.++.|+|+||+++ ++.++|+++|++||.|..|.+.++.. +|||+|.+ ..+|..|++.++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 99999999999999999999988743 69999999 899999999994 7778888888
Q ss_pred ecccc
Q 014815 175 CSTSQ 179 (418)
Q Consensus 175 v~~~~ 179 (418)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76543
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=9.3e-11 Score=82.67 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=62.8
Q ss_pred ccccEEEEcCCCCC-----CCH----HHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014815 273 SQVKAVYVKNLPRN-----VTQ----DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (418)
Q Consensus 273 ~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~ 343 (418)
++..+|+|.-++.+ +-. .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||. |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34479999988743 323 5689999999999999999875 9999999999999998 9999999
Q ss_pred CeEEEEEeccC
Q 014815 344 GQALECSLAKP 354 (418)
Q Consensus 344 g~~l~v~~a~~ 354 (418)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.5e-10 Score=80.47 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=63.4
Q ss_pred CCCCCCEEEEeCCCCC-----CCH----HHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCc
Q 014815 97 LPPHGSEVYIGGIPHD-----ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (418)
Q Consensus 97 ~~~~~~~l~V~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~ 167 (418)
.-|+..||+|.-++.+ +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3567789999998743 222 5688999999999999999873 9999999999999997 99999
Q ss_pred cCCeEEEecccc
Q 014815 168 FKGKKIRCSTSQ 179 (418)
Q Consensus 168 ~~g~~i~v~~~~ 179 (418)
+.||.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=2.8e-09 Score=91.54 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=65.6
Q ss_pred cEEEEcCCC-----CCCCHHHHHHHHhccccEEEEEeccCCC----CCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014815 276 KAVYVKNLP-----RNVTQDQLKKLFEHHGRITKVVVPPAKP----GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (418)
Q Consensus 276 ~~l~V~nLp-----~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~ 346 (418)
..+.+.|+- ..-.+++|++.|++||.|.+|.|+++.. ++.++|++||+|.+.++|.+|+..|||+.++||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 445555552 2335689999999999999999985543 4477899999999999999999999999999999
Q ss_pred EEEEeccC
Q 014815 347 LECSLAKP 354 (418)
Q Consensus 347 l~v~~a~~ 354 (418)
|.|.|...
T Consensus 205 i~~~~~~~ 212 (222)
T 3dxb_A 205 VVAEVYDQ 212 (222)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=3.6e-09 Score=90.83 Aligned_cols=83 Identities=24% Similarity=0.332 Sum_probs=69.2
Q ss_pred CCCCCEEEEeCCC-----CCCCHHHHHHHHhccCCeeEEEEeeCC----CCCCCcceEEEEEcCHHHHHHHHHHhCCCcc
Q 014815 98 PPHGSEVYIGGIP-----HDASEHDLRDFCQSIGEVTEVRIMKGK----DSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (418)
Q Consensus 98 ~~~~~~l~V~nLp-----~~~t~~~l~~~f~~~G~v~~v~i~~~~----~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~ 168 (418)
....+.+.+.|+- .+-.+++|++.|++||.|.+|.|+++. .+++++|++||+|.+.++|.+|++.|||..+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3345666676663 234567899999999999999998654 4458999999999999999999999999999
Q ss_pred CCeEEEeccccc
Q 014815 169 KGKKIRCSTSQA 180 (418)
Q Consensus 169 ~g~~i~v~~~~~ 180 (418)
.||.|+|.+...
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999998763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.9e-08 Score=72.20 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc-----ccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHH-----GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
++|-+-|||..++...|+.++.++ |.|+.|.+..+. +=|+|+|.+...|.+|..+|+|..|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999999 999999999997 679999999999999999999999999999986
Q ss_pred e
Q 014815 351 L 351 (418)
Q Consensus 351 ~ 351 (418)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=5.4e-07 Score=64.72 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=67.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-----CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
..++|-|-|||..+++..|+.+++.+ |.+..|.++.+ -+-|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47999999999999999999999999 99999999988 45699999999999999989999999999999
Q ss_pred ecc
Q 014815 175 CST 177 (418)
Q Consensus 175 v~~ 177 (418)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.5e-06 Score=60.86 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-----CCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEE
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 174 (418)
-.++|.|.|||+.+.++.|.-+|+.- |+|..+.... +.|+|+|.+.+.|++.|+ ...+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 46899999999999999999999872 6899998754 469999999999999994 457889999999
Q ss_pred eccccc--cccccccCCCCCCC
Q 014815 175 CSTSQA--KYRLFIGNIPRNWG 194 (418)
Q Consensus 175 v~~~~~--~~~l~v~~l~~~~~ 194 (418)
|.+..+ ..+|++.+|++.++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 977654 46899999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=7e-06 Score=58.95 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCC-C----HHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014815 276 KAVYVKNLPRNV-T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (418)
Q Consensus 276 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~ 350 (418)
++|+|.||+..+ . .+.++.+|..|+.+......+.- .-..|.|.+.++|.+|...||+..|.|+.|+|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 789999998876 2 25779999999988777776654 357899999999999999999999999999999
Q ss_pred eccCCC
Q 014815 351 LAKPQA 356 (418)
Q Consensus 351 ~a~~~~ 356 (418)
|+.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 998543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.0003 Score=50.25 Aligned_cols=77 Identities=29% Similarity=0.335 Sum_probs=64.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhc-----cccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEH-----HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~ 348 (418)
..++|.|.|||..++++.|.-+|+. =|.|..|.... +-|+|+|.+...|+++|.. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3479999999999999999999987 25788888865 3699999999999999874 35689999999
Q ss_pred EEeccCCCCCC
Q 014815 349 CSLAKPQADQK 359 (418)
Q Consensus 349 v~~a~~~~~~~ 359 (418)
|....+....+
T Consensus 78 V~P~~~~~~~r 88 (104)
T 2dhx_A 78 LRPAPPRAPAR 88 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEcCCCCCcce
Confidence 98877665543
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=1.7e-05 Score=56.93 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCCC-C----HHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEe
Q 014815 101 GSEVYIGGIPHDA-S----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (418)
Q Consensus 101 ~~~l~V~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 175 (418)
.++|+|.||+.++ . ...++.+|..|+++......+. -.=..|.|.+.++|.+|...|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998764 2 2578999999999999888775 335899999999999999999999999999999
Q ss_pred ccccc
Q 014815 176 STSQA 180 (418)
Q Consensus 176 ~~~~~ 180 (418)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98873
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.93 E-value=8.5e-05 Score=52.53 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCC--cCcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QALE 348 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~A~~~l~g~~i~g-----~~l~ 348 (418)
++|.|++||+.+|++++.+.++....+.....+..+.... .-.-|||.|.+.+++..-.+.++|..|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998888777765553221 12469999999999999999999988743 3345
Q ss_pred EEecc
Q 014815 349 CSLAK 353 (418)
Q Consensus 349 v~~a~ 353 (418)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.89 E-value=6.2e-05 Score=53.23 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=57.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCC--CcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
++|.|++||+.+|++++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998888877777654332 2346999999999999999999998874
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=0.00046 Score=51.07 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 014815 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG-QALECSL 351 (418)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g-~~l~v~~ 351 (418)
...+.|.|-+.|... ...|...|++||.|.+...... ..+-.|+|.+..+|++||. .||..|+| -.|=|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 345899999999884 6778899999999998887221 3699999999999999998 59999985 7778887
Q ss_pred cc
Q 014815 352 AK 353 (418)
Q Consensus 352 a~ 353 (418)
+.
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.00064 Score=50.30 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCC-eEEEeccc
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG-KKIRCSTS 178 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~~i~v~~~ 178 (418)
..+.|.|-+.|+.. -..|..+|++||.|....... ...+..|.|.+..+|.+|| ..||..|.| -.|=|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 46889999999986 567888999999999888622 2458999999999999999 579999975 55666665
Q ss_pred c
Q 014815 179 Q 179 (418)
Q Consensus 179 ~ 179 (418)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.39 E-value=0.00053 Score=48.65 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=58.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCC--cCcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE--KNRIGFVHFAERSSAMKALKNTEKYELDG-----QAL 347 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~A~~~l~g~~i~g-----~~l 347 (418)
+.+|.|+.||+.+|++++.+.++..-.+.....+..+.+.. .-.-|||.|.+.++...-.+..+|..|-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 36899999999999999999998876665544444332211 11358999999999999999999987743 345
Q ss_pred EEEecc
Q 014815 348 ECSLAK 353 (418)
Q Consensus 348 ~v~~a~ 353 (418)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.35 E-value=0.00061 Score=48.01 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=46.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.+.++| +.|..+...||.++|+.||.| .|+.+.+ -.|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 467778 999999999999999999853 4555554 389999999999999999764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.31 E-value=0.00091 Score=47.10 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=45.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~ 164 (418)
....++| ++|+.+...+|.++|+.||.| .|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445555 999999999999999999955 4555554 269999999999999998663
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00055 Score=48.39 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=46.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.+.++| +.|..+...||.++|+.||. ..|+.+.+ ..|||.|.+.+.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 356777 99999999999999999994 45666665 389999999999999999774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.14 E-value=0.00054 Score=48.65 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCC--CcceEEEEEcCHHHHHHHHHHhCCCccC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSE--NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~e~A~~A~~~l~~~~~~ 169 (418)
++-+|.|+.||+.+|++++.+.+..+-.+.....+..+.+.+ .-.-|||.|.+.++.....+..+|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 456799999999999999888887765544333333222211 1235999999999999999999998763
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.85 E-value=0.0016 Score=46.07 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=44.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhC
Q 014815 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN 164 (418)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~ 164 (418)
.||+-++|+.+...+|..+|+.|| =..|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 455559999999999999999999 445666654 269999999999999998765
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.64 E-value=0.0032 Score=47.19 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEE-EEeccCCC---------CC----CcCcEEEEEeCCHHHHHHHHHHhCCce
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKP---------GQ----EKNRIGFVHFAERSSAMKALKNTEKYE 341 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~---------~~----~~~g~afV~F~~~~~A~~A~~~l~g~~ 341 (418)
..|.|-+.|... ...+.+.|++||.|.. +.+.+... .. ...++..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 678898997664 4567788999999876 32222110 00 123688999999999999998 59999
Q ss_pred eCCeEEEEEeccC
Q 014815 342 LDGQALECSLAKP 354 (418)
Q Consensus 342 i~g~~l~v~~a~~ 354 (418)
|+|..|=|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888888764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=59.07 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=43.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHH
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID 161 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~ 161 (418)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4899998 79999999999999999999999988763 3699999999999997774
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.14 E-value=0.0072 Score=45.33 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEE-EeeC------------CCCC-CCcceEEEEEcCHHHHHHHHHHhCC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR-IMKG------------KDSS-ENKGFAFVTFRNVELASKAIDKLNN 165 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~-i~~~------------~~~g-~~~g~afV~F~~~e~A~~A~~~l~~ 165 (418)
..+.|.|-+.|++.+. .|-.+|++||.|..-. +.+. +-.. .......|+|.++.+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3578999999877665 5677999999986521 1110 0000 12457899999999999999 5899
Q ss_pred CccCCeEEEeccccc
Q 014815 166 TEFKGKKIRCSTSQA 180 (418)
Q Consensus 166 ~~~~g~~i~v~~~~~ 180 (418)
..|.|.-|=|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888877653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.76 E-value=0.0047 Score=57.67 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~ 335 (418)
++|+|. .|..+++.+|.++|++||.|.++.+..++ ..||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999999988755 3599999999998887754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.46 E-value=1.1 Score=42.70 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=46.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
....++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34677776 99999999999999999954 5555544 479999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.57 E-value=1.4 Score=41.93 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=45.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC
Q 014815 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~ 166 (418)
...++|+ +|..+...+|.++|+.||.| .|+.+- ...|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHhC
Confidence 3455555 99999999999999999954 555443 337999999999999999988643
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=85.13 E-value=7 Score=26.60 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhC
Q 014815 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (418)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~ 338 (418)
.+-|.|-|+|..+-..++--.....|---.|..+. |-|.|.|.+.++...|+..|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 37788999999999988888888888766666654 679999999999999998863
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.78 E-value=5.8 Score=26.42 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHhccc-----cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014815 285 RNVTQDQLKKLFEHHG-----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (418)
Q Consensus 285 ~~~t~~~L~~~F~~~G-----~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 353 (418)
..+...+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3456677777766433 366777754 488999855 56888999999999999999998764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=71.79 E-value=21 Score=24.31 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCC
Q 014815 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (418)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~ 166 (418)
..+-|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.+.-..|+..|-++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc
Confidence 45789999999999999988888888876666654 456999999999999999887543
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.38 E-value=18 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHH--hccccEEEEEeccCCCCCCcCcEEEEEeCCH
Q 014815 276 KAVYVKNLPR-N--------VTQDQLKKLF--EHHGRITKVVVPPAKPGQEKNRIGFVHFAER 327 (418)
Q Consensus 276 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~ 327 (418)
-.+.|-|+|. . .+...|++.| +.|..+. |+.+....+.. |+|.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~--g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHS--GTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEE--EEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCc--eeEEEEecCC
Confidence 4677888887 2 3457899977 9998755 55555555543 8999999864
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.19 E-value=49 Score=21.66 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=40.3
Q ss_pred EEEEeCC-CCCCCHHHHHHHHhccC-----CeeEEEEeeCCCCCCCcceEEEEEcCHHHHHHHHHHhCCCccCCeEEEec
Q 014815 103 EVYIGGI-PHDASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (418)
Q Consensus 103 ~l~V~nL-p~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 176 (418)
+|||..= -..+...+|..++..-+ .|-.|.|..+ |.||+-... .|..+++.|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555322 22366777777776544 3556666433 788887654 4677888899999999999887
Q ss_pred cc
Q 014815 177 TS 178 (418)
Q Consensus 177 ~~ 178 (418)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 55
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.67 E-value=43 Score=26.31 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=35.8
Q ss_pred EEEEeCCCC-C--------CCHHHHHHHH--hccCCeeEEEEeeCCCCCCCcceEEEEEcCHHHH
Q 014815 103 EVYIGGIPH-D--------ASEHDLRDFC--QSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELA 156 (418)
Q Consensus 103 ~l~V~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A 156 (418)
++.|-|+|. . .+...|++.| ..|.++.-..+. .. ....|+|.|.|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecCChHH
Confidence 467888887 2 3457899977 999987644444 33 23688999999885543
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.40 E-value=1.1e+02 Score=20.96 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=39.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cc-cEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
-|+-......+..+|++.++. |+ .|..|..+..+.+. --|||++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHh
Confidence 344446678899999988887 56 47777766554332 3699999888777766543
No 410
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.50 E-value=8.8 Score=34.62 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHhc
Q 014815 286 NVTQDQLKKLFEH 298 (418)
Q Consensus 286 ~~t~~~L~~~F~~ 298 (418)
.++.++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4577777776654
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.29 E-value=70 Score=21.90 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.9
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEc
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (418)
.|+.|+|.+-...|+-++||-|+|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888887767889999999985
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.96 E-value=1.3e+02 Score=18.96 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHH
Q 014815 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (418)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 336 (418)
.++.|.++.-.-=...|...+.. ..|..+.+-... +.+.|.|.+.+....+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 57889999877777888888888 778888875543 6788888855566666664
No 413
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.90 E-value=85 Score=22.15 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.9
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEc
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (418)
.|+.|+|.+-...|+-++||-|+|.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~d 29 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLD 29 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888887767889999999985
No 414
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.02 E-value=91 Score=22.19 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=20.6
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEEc
Q 014815 127 EVTEVRIMKGKDSSENKGFAFVTFR 151 (418)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~F~ 151 (418)
.|+.|+|.+-...|+-++||-|+|.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~d 29 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEET
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEC
Confidence 4778888877667889999999985
No 415
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.17 E-value=22 Score=27.33 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=17.6
Q ss_pred HHHHHHHhccccEEEEEeccCCCCCCcCcEEEEEeC
Q 014815 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (418)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~ 325 (418)
+++.++|...|.|+..... +||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4556777777877766542 589999975
No 416
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=22.15 E-value=2.1e+02 Score=20.11 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=43.0
Q ss_pred CCEEEEeCCCCCCCHHH--HHHHHhcc--------C-----CeeEEEEeeCCCC--CCCcceEEEEEcCHH---HHHHHH
Q 014815 101 GSEVYIGGIPHDASEHD--LRDFCQSI--------G-----EVTEVRIMKGKDS--SENKGFAFVTFRNVE---LASKAI 160 (418)
Q Consensus 101 ~~~l~V~nLp~~~t~~~--l~~~f~~~--------G-----~v~~v~i~~~~~~--g~~~g~afV~F~~~e---~A~~A~ 160 (418)
.+.|.|.+||..-.+.. +..+|... + .|..+.-...+.. ...-....|.|.... ...+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999999743332 33343322 2 2555554333211 112335777777654 455555
Q ss_pred HHhCCCccCCeEEEec
Q 014815 161 DKLNNTEFKGKKIRCS 176 (418)
Q Consensus 161 ~~l~~~~~~g~~i~v~ 176 (418)
.......+.|.+|++.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5555667899998875
Done!