Query 014817
Match_columns 418
No_of_seqs 272 out of 2270
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.4E-30 1.8E-34 278.5 31.3 286 101-398 12-313 (2102)
2 KOG0166 Karyopherin (importin) 100.0 6.4E-30 1.4E-34 246.5 25.8 284 101-398 108-394 (514)
3 PLN03200 cellulose synthase-in 100.0 3.3E-28 7.2E-33 266.1 30.5 285 102-400 446-767 (2102)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.4E-28 3E-33 221.2 18.2 287 99-399 111-400 (526)
5 KOG4224 Armadillo repeat prote 100.0 7.9E-27 1.7E-31 211.6 20.8 278 103-399 127-407 (550)
6 KOG0166 Karyopherin (importin) 99.9 3.4E-26 7.3E-31 220.9 23.0 285 104-400 68-354 (514)
7 KOG4224 Armadillo repeat prote 99.9 6.8E-26 1.5E-30 205.6 18.5 277 102-398 167-447 (550)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-25 5.4E-30 200.3 15.4 282 102-397 71-356 (526)
9 KOG4199 Uncharacterized conser 99.8 2.5E-19 5.4E-24 161.6 22.4 273 117-403 120-409 (461)
10 PF04564 U-box: U-box domain; 99.8 7.8E-22 1.7E-26 144.4 4.9 72 14-85 1-72 (73)
11 KOG4199 Uncharacterized conser 99.8 1.1E-18 2.5E-23 157.4 24.8 281 103-397 146-444 (461)
12 PF05804 KAP: Kinesin-associat 99.8 2.5E-18 5.4E-23 175.2 26.8 253 122-397 267-520 (708)
13 KOG2122 Beta-catenin-binding p 99.8 2.3E-19 4.9E-24 185.7 18.9 272 122-400 316-604 (2195)
14 PF05804 KAP: Kinesin-associat 99.8 7.6E-18 1.7E-22 171.7 26.3 218 167-399 263-481 (708)
15 KOG1048 Neural adherens juncti 99.8 8E-18 1.7E-22 167.9 18.3 284 102-400 233-598 (717)
16 smart00504 Ubox Modified RING 99.7 1.1E-17 2.5E-22 119.5 5.6 63 17-80 1-63 (63)
17 KOG1048 Neural adherens juncti 99.7 6.8E-16 1.5E-20 154.2 18.7 284 102-399 275-686 (717)
18 PF04826 Arm_2: Armadillo-like 99.7 6.5E-15 1.4E-19 133.9 21.9 197 142-354 8-205 (254)
19 PF04826 Arm_2: Armadillo-like 99.6 6.6E-14 1.4E-18 127.4 19.4 200 192-403 9-211 (254)
20 KOG4500 Rho/Rac GTPase guanine 99.5 1.1E-12 2.3E-17 122.6 20.0 291 102-398 87-391 (604)
21 KOG2122 Beta-catenin-binding p 99.5 3.7E-13 8.1E-18 140.5 14.7 225 120-354 367-601 (2195)
22 PF10508 Proteasom_PSMB: Prote 99.4 2.1E-10 4.5E-15 115.8 28.0 278 103-398 78-367 (503)
23 KOG4500 Rho/Rac GTPase guanine 99.4 6.1E-11 1.3E-15 111.1 22.1 270 125-400 245-522 (604)
24 cd00020 ARM Armadillo/beta-cat 99.4 9.8E-12 2.1E-16 100.6 14.6 118 278-397 2-120 (120)
25 PF15227 zf-C3HC4_4: zinc fing 99.4 1.4E-13 2.9E-18 88.5 2.8 39 20-58 1-42 (42)
26 PF10508 Proteasom_PSMB: Prote 99.3 2.9E-10 6.4E-15 114.7 23.8 250 103-378 4-254 (503)
27 cd00020 ARM Armadillo/beta-cat 99.3 1.9E-11 4E-16 98.9 12.1 113 239-354 6-120 (120)
28 KOG0946 ER-Golgi vesicle-tethe 99.3 3.5E-09 7.6E-14 105.9 25.6 291 93-397 13-346 (970)
29 TIGR00599 rad18 DNA repair pro 99.3 8.7E-12 1.9E-16 118.9 6.7 72 12-84 21-92 (397)
30 PLN03208 E3 ubiquitin-protein 99.2 5.1E-12 1.1E-16 107.4 4.4 60 12-71 13-87 (193)
31 KOG1222 Kinesin associated pro 99.2 1.6E-10 3.5E-15 109.6 14.1 197 169-376 279-476 (791)
32 KOG1222 Kinesin associated pro 99.2 5.1E-09 1.1E-13 99.6 20.2 281 94-397 252-534 (791)
33 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.4E-09 2.9E-14 103.5 16.4 235 147-392 56-309 (312)
34 PRK09687 putative lyase; Provi 99.1 9E-09 1.9E-13 95.8 20.5 223 104-393 56-278 (280)
35 PF13923 zf-C3HC4_2: Zinc fing 99.1 8.4E-11 1.8E-15 74.7 2.7 38 20-58 1-39 (39)
36 cd00256 VATPase_H VATPase_H, r 99.0 8.1E-08 1.8E-12 93.3 23.0 278 104-397 103-425 (429)
37 PRK09687 putative lyase; Provi 99.0 1.9E-08 4.2E-13 93.6 18.2 195 147-397 55-250 (280)
38 PF13445 zf-RING_UBOX: RING-ty 99.0 2E-10 4.3E-15 73.6 2.1 36 20-56 1-43 (43)
39 PF11789 zf-Nse: Zinc-finger o 98.9 2.6E-10 5.6E-15 78.2 1.4 43 17-59 11-55 (57)
40 KOG0168 Putative ubiquitin fus 98.9 1.3E-07 2.9E-12 95.5 20.3 260 101-378 166-437 (1051)
41 PF00097 zf-C3HC4: Zinc finger 98.9 1E-09 2.2E-14 70.7 3.0 39 20-58 1-41 (41)
42 KOG0287 Postreplication repair 98.9 8.5E-10 1.8E-14 99.7 3.0 67 17-84 23-89 (442)
43 PF03224 V-ATPase_H_N: V-ATPas 98.9 3.8E-08 8.3E-13 93.6 14.5 198 197-400 57-272 (312)
44 KOG1293 Proteins containing ar 98.9 3.4E-07 7.3E-12 90.6 21.0 142 257-399 392-535 (678)
45 PF14835 zf-RING_6: zf-RING of 98.9 5.9E-10 1.3E-14 76.2 1.0 59 16-77 6-65 (65)
46 PHA02929 N1R/p28-like protein; 98.8 2.5E-09 5.3E-14 95.3 3.9 50 13-63 170-227 (238)
47 KOG2160 Armadillo/beta-catenin 98.8 2.4E-07 5.1E-12 86.2 16.4 184 166-354 96-282 (342)
48 KOG2160 Armadillo/beta-catenin 98.8 5.3E-07 1.1E-11 83.9 17.5 200 206-414 94-299 (342)
49 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.9E-09 1.1E-13 70.6 2.9 47 16-63 1-48 (50)
50 PRK13800 putative oxidoreducta 98.7 2.3E-06 5E-11 92.7 23.9 120 242-394 777-896 (897)
51 KOG0320 Predicted E3 ubiquitin 98.7 9.2E-09 2E-13 85.2 3.8 52 17-69 131-184 (187)
52 PRK13800 putative oxidoreducta 98.7 1.6E-06 3.5E-11 93.9 22.1 225 102-395 621-865 (897)
53 KOG0168 Putative ubiquitin fus 98.7 6.4E-07 1.4E-11 90.8 17.2 204 166-378 181-391 (1051)
54 COG5432 RAD18 RING-finger-cont 98.7 8.2E-09 1.8E-13 91.5 3.2 66 18-84 26-91 (391)
55 KOG0317 Predicted E3 ubiquitin 98.7 1.4E-08 3E-13 90.7 3.7 55 12-67 233-288 (293)
56 PF13639 zf-RING_2: Ring finge 98.7 8.4E-09 1.8E-13 67.4 1.7 40 19-59 2-44 (44)
57 KOG0823 Predicted E3 ubiquitin 98.6 1.4E-08 3.1E-13 88.1 3.0 57 16-72 46-104 (230)
58 cd00162 RING RING-finger (Real 98.6 3.4E-08 7.4E-13 64.7 3.9 43 19-61 1-44 (45)
59 cd00256 VATPase_H VATPase_H, r 98.6 2.4E-05 5.2E-10 76.3 24.9 242 146-399 53-310 (429)
60 KOG4642 Chaperone-dependent E3 98.6 3.6E-08 7.8E-13 86.2 4.4 76 10-85 204-279 (284)
61 KOG3678 SARM protein (with ste 98.6 3E-06 6.5E-11 80.8 17.5 269 102-398 180-453 (832)
62 KOG2177 Predicted E3 ubiquitin 98.6 4.8E-08 1E-12 93.6 4.2 70 12-84 8-77 (386)
63 smart00184 RING Ring finger. E 98.6 6.5E-08 1.4E-12 61.1 3.4 39 20-58 1-39 (39)
64 PF01602 Adaptin_N: Adaptin N 98.6 9.3E-06 2E-10 83.2 21.1 244 68-354 53-296 (526)
65 KOG0946 ER-Golgi vesicle-tethe 98.5 2.9E-06 6.3E-11 85.5 15.9 217 147-377 23-264 (970)
66 KOG1293 Proteins containing ar 98.5 6.3E-06 1.4E-10 81.8 18.0 225 166-397 390-627 (678)
67 TIGR00570 cdk7 CDK-activating 98.5 1.6E-07 3.6E-12 86.2 5.8 61 16-76 2-71 (309)
68 KOG4646 Uncharacterized conser 98.4 4.4E-06 9.5E-11 66.8 11.6 153 239-394 15-167 (173)
69 PHA02926 zinc finger-like prot 98.4 1.9E-07 4.1E-12 80.4 3.7 51 13-63 166-230 (242)
70 PF01602 Adaptin_N: Adaptin N 98.4 3.3E-05 7.2E-10 79.1 21.0 254 105-399 117-371 (526)
71 KOG0311 Predicted E3 ubiquitin 98.4 6.2E-08 1.3E-12 88.7 -0.1 67 14-80 40-108 (381)
72 PF14634 zf-RING_5: zinc-RING 98.3 4E-07 8.7E-12 59.3 3.0 41 19-60 1-44 (44)
73 KOG3678 SARM protein (with ste 98.3 8.6E-06 1.9E-10 77.8 12.8 176 188-372 173-353 (832)
74 KOG2759 Vacuolar H+-ATPase V1 98.3 0.00011 2.3E-09 69.8 19.1 223 167-397 171-438 (442)
75 PF05536 Neurochondrin: Neuroc 98.3 0.00014 3E-09 74.1 21.2 245 148-407 7-270 (543)
76 COG5574 PEX10 RING-finger-cont 98.2 4.8E-07 1E-11 80.0 2.4 52 15-66 213-265 (271)
77 KOG4646 Uncharacterized conser 98.2 8.6E-06 1.9E-10 65.1 8.8 131 194-335 15-147 (173)
78 KOG2171 Karyopherin (importin) 98.2 0.00053 1.1E-08 72.7 23.4 261 122-400 224-507 (1075)
79 KOG2171 Karyopherin (importin) 98.2 0.00011 2.4E-09 77.7 18.2 235 105-354 351-594 (1075)
80 KOG1789 Endocytosis protein RM 98.2 0.0004 8.7E-09 72.5 21.5 243 121-378 1742-2141(2235)
81 PF05536 Neurochondrin: Neuroc 98.2 0.00016 3.4E-09 73.7 19.0 202 102-313 5-214 (543)
82 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0004 8.8E-09 66.0 19.4 237 107-354 161-438 (442)
83 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00046 1E-08 66.8 20.5 254 127-399 6-271 (371)
84 PF10165 Ric8: Guanine nucleot 98.1 0.00021 4.7E-09 71.1 18.6 269 125-397 2-337 (446)
85 PTZ00429 beta-adaptin; Provisi 98.1 0.001 2.2E-08 69.9 23.7 254 102-397 32-285 (746)
86 KOG2734 Uncharacterized conser 98.1 0.0017 3.6E-08 62.2 22.7 241 123-376 103-370 (536)
87 KOG2973 Uncharacterized conser 98.1 0.00058 1.2E-08 62.4 18.8 274 104-398 5-316 (353)
88 PF00514 Arm: Armadillo/beta-c 98.1 3.8E-06 8.2E-11 53.8 3.6 41 272-312 1-41 (41)
89 KOG2660 Locus-specific chromos 98.1 1.9E-06 4.1E-11 78.8 2.4 67 13-80 11-82 (331)
90 COG5222 Uncharacterized conser 98.0 5.7E-06 1.2E-10 74.0 5.0 66 18-83 275-342 (427)
91 PTZ00429 beta-adaptin; Provisi 98.0 0.0022 4.7E-08 67.5 24.9 221 148-399 107-328 (746)
92 KOG0978 E3 ubiquitin ligase in 98.0 1.6E-06 3.5E-11 87.8 1.5 53 17-69 643-695 (698)
93 KOG2042 Ubiquitin fusion degra 98.0 6.4E-06 1.4E-10 85.9 5.7 72 12-84 865-937 (943)
94 KOG2164 Predicted E3 ubiquitin 98.0 3.4E-06 7.3E-11 81.5 3.3 54 17-70 186-243 (513)
95 PF12678 zf-rbx1: RING-H2 zinc 98.0 4.7E-06 1E-10 60.7 3.4 39 20-59 22-73 (73)
96 PF00514 Arm: Armadillo/beta-c 98.0 1.1E-05 2.4E-10 51.7 4.7 41 313-354 1-41 (41)
97 KOG4159 Predicted E3 ubiquitin 97.9 7.3E-06 1.6E-10 78.8 4.0 73 10-83 77-154 (398)
98 KOG0297 TNF receptor-associate 97.9 9.3E-06 2E-10 79.1 4.5 70 13-83 17-88 (391)
99 TIGR02270 conserved hypothetic 97.9 0.0015 3.3E-08 64.1 19.5 188 148-397 88-296 (410)
100 KOG2023 Nuclear transport rece 97.9 0.00054 1.2E-08 68.5 15.5 176 146-334 128-308 (885)
101 KOG1789 Endocytosis protein RM 97.9 0.0064 1.4E-07 64.0 23.6 137 258-397 1741-1883(2235)
102 KOG0289 mRNA splicing factor [ 97.8 3.1E-05 6.8E-10 73.1 5.5 51 18-69 1-52 (506)
103 KOG2973 Uncharacterized conser 97.8 0.0015 3.3E-08 59.7 15.5 190 197-397 5-204 (353)
104 TIGR02270 conserved hypothetic 97.8 0.0033 7.2E-08 61.7 19.2 151 147-352 55-205 (410)
105 PF13646 HEAT_2: HEAT repeats; 97.7 0.00021 4.6E-09 54.0 7.9 88 148-267 1-88 (88)
106 PF12348 CLASP_N: CLASP N term 97.7 0.00043 9.3E-09 62.7 11.0 189 205-401 17-210 (228)
107 COG5113 UFD2 Ubiquitin fusion 97.7 6.8E-05 1.5E-09 74.0 5.8 72 12-84 849-921 (929)
108 PF13646 HEAT_2: HEAT repeats; 97.6 0.00033 7.2E-09 52.9 8.1 86 197-308 1-88 (88)
109 COG5369 Uncharacterized conser 97.6 0.00043 9.3E-09 67.6 10.2 197 175-376 411-617 (743)
110 PF12861 zf-Apc11: Anaphase-pr 97.6 7.8E-05 1.7E-09 54.8 3.6 46 18-63 33-82 (85)
111 KOG2023 Nuclear transport rece 97.5 0.008 1.7E-07 60.5 18.2 272 101-398 127-464 (885)
112 PF11841 DUF3361: Domain of un 97.5 0.0027 5.8E-08 53.1 12.3 126 239-364 10-142 (160)
113 COG1413 FOG: HEAT repeat [Ener 97.5 0.01 2.2E-07 57.0 18.4 155 147-356 44-211 (335)
114 KOG1813 Predicted E3 ubiquitin 97.5 4.3E-05 9.3E-10 68.8 1.7 45 18-63 242-286 (313)
115 PF10165 Ric8: Guanine nucleot 97.5 0.033 7.2E-07 55.6 22.1 235 117-357 45-340 (446)
116 PF12348 CLASP_N: CLASP N term 97.4 0.00047 1E-08 62.4 8.0 181 112-313 15-207 (228)
117 KOG2734 Uncharacterized conser 97.4 0.026 5.7E-07 54.3 19.5 245 102-354 125-400 (536)
118 KOG3039 Uncharacterized conser 97.4 0.00011 2.4E-09 64.2 3.2 53 16-69 220-276 (303)
119 KOG0212 Uncharacterized conser 97.4 0.0031 6.8E-08 62.1 13.2 227 147-397 209-444 (675)
120 PF09759 Atx10homo_assoc: Spin 97.4 0.0013 2.9E-08 50.8 8.6 67 299-366 2-71 (102)
121 PF14664 RICTOR_N: Rapamycin-i 97.4 0.0077 1.7E-07 58.4 16.0 206 196-411 26-240 (371)
122 smart00185 ARM Armadillo/beta- 97.4 0.00029 6.4E-09 44.7 4.2 39 273-311 2-40 (41)
123 COG5231 VMA13 Vacuolar H+-ATPa 97.4 0.017 3.7E-07 53.3 16.8 223 169-397 165-428 (432)
124 KOG2879 Predicted E3 ubiquitin 97.4 0.00019 4E-09 64.1 4.1 50 14-63 236-287 (298)
125 KOG0212 Uncharacterized conser 97.3 0.013 2.9E-07 57.9 16.5 239 145-400 166-409 (675)
126 KOG0824 Predicted E3 ubiquitin 97.3 0.00011 2.5E-09 66.3 2.0 48 19-66 9-56 (324)
127 PF04641 Rtf2: Rtf2 RING-finge 97.3 0.00021 4.5E-09 65.9 3.8 53 14-68 110-166 (260)
128 COG5152 Uncharacterized conser 97.3 8.4E-05 1.8E-09 62.7 1.1 45 18-63 197-241 (259)
129 KOG4628 Predicted E3 ubiquitin 97.3 0.00015 3.2E-09 68.1 2.8 47 18-64 230-279 (348)
130 KOG0802 E3 ubiquitin ligase [P 97.3 0.00011 2.4E-09 75.2 2.0 47 15-62 289-340 (543)
131 KOG1517 Guanine nucleotide bin 97.3 0.019 4.2E-07 60.6 17.8 229 121-361 487-739 (1387)
132 PF11841 DUF3361: Domain of un 97.2 0.0094 2E-07 49.9 12.6 130 189-322 5-143 (160)
133 COG5369 Uncharacterized conser 97.2 0.0016 3.5E-08 63.7 8.8 185 122-320 407-602 (743)
134 COG1413 FOG: HEAT repeat [Ener 97.2 0.072 1.6E-06 51.2 20.3 187 102-354 43-242 (335)
135 smart00185 ARM Armadillo/beta- 97.2 0.00097 2.1E-08 42.2 5.0 40 314-354 2-41 (41)
136 KOG0826 Predicted E3 ubiquitin 97.2 0.00033 7.2E-09 64.1 3.5 49 14-63 297-346 (357)
137 KOG1002 Nucleotide excision re 97.1 0.00025 5.4E-09 68.6 2.4 51 15-65 534-588 (791)
138 KOG1241 Karyopherin (importin) 97.1 0.039 8.4E-07 56.5 17.7 271 105-400 175-480 (859)
139 PF09759 Atx10homo_assoc: Spin 97.1 0.0014 3.1E-08 50.6 5.9 68 121-193 3-70 (102)
140 KOG0213 Splicing factor 3b, su 97.1 0.052 1.1E-06 55.5 18.3 146 244-397 803-954 (1172)
141 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00037 8E-09 64.7 2.9 46 16-62 286-344 (491)
142 KOG4413 26S proteasome regulat 97.1 0.21 4.5E-06 46.5 20.5 263 122-397 100-377 (524)
143 KOG1242 Protein containing ada 97.0 0.062 1.4E-06 53.9 17.6 249 119-400 149-404 (569)
144 KOG1062 Vesicle coat complex A 96.9 0.57 1.2E-05 48.7 23.9 265 122-399 197-546 (866)
145 KOG1077 Vesicle coat complex A 96.9 0.19 4.1E-06 51.3 19.9 265 109-402 153-438 (938)
146 KOG1059 Vesicle coat complex A 96.9 0.36 7.8E-06 49.5 21.8 250 105-397 147-402 (877)
147 KOG1242 Protein containing ada 96.9 0.15 3.2E-06 51.3 19.0 171 168-354 269-444 (569)
148 KOG1241 Karyopherin (importin) 96.9 0.021 4.5E-07 58.4 13.2 208 146-363 319-539 (859)
149 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0027 5.8E-08 43.3 5.0 55 209-269 1-55 (55)
150 KOG4367 Predicted Zn-finger pr 96.8 0.00046 1E-08 65.2 1.2 35 15-49 2-36 (699)
151 KOG2999 Regulator of Rac1, req 96.8 0.09 1.9E-06 52.1 16.5 167 196-367 84-256 (713)
152 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.4 8.6E-06 51.0 22.5 246 142-397 113-406 (802)
153 KOG2979 Protein involved in DN 96.8 0.0013 2.7E-08 58.6 3.6 45 17-61 176-222 (262)
154 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0029 6.4E-08 43.1 4.8 55 167-222 1-55 (55)
155 KOG2817 Predicted E3 ubiquitin 96.8 0.0014 3E-08 61.9 4.1 53 8-60 319-382 (394)
156 COG5240 SEC21 Vesicle coat com 96.8 0.39 8.4E-06 48.1 20.7 66 327-398 489-556 (898)
157 KOG4413 26S proteasome regulat 96.8 0.11 2.4E-06 48.3 16.0 224 167-400 96-336 (524)
158 KOG3039 Uncharacterized conser 96.7 0.00098 2.1E-08 58.4 2.5 37 13-49 39-75 (303)
159 KOG3036 Protein involved in ce 96.7 0.11 2.4E-06 46.4 14.8 150 122-279 97-255 (293)
160 KOG0567 HEAT repeat-containing 96.7 0.35 7.7E-06 43.7 18.1 201 145-398 66-281 (289)
161 KOG1059 Vesicle coat complex A 96.7 0.6 1.3E-05 48.0 21.6 182 103-313 182-366 (877)
162 KOG1517 Guanine nucleotide bin 96.7 0.064 1.4E-06 56.9 15.3 236 148-397 474-732 (1387)
163 KOG1824 TATA-binding protein-i 96.6 0.13 2.7E-06 54.3 17.0 272 106-400 9-289 (1233)
164 PF07814 WAPL: Wings apart-lik 96.6 0.26 5.6E-06 47.9 18.5 280 102-401 21-359 (361)
165 KOG1062 Vesicle coat complex A 96.5 0.74 1.6E-05 47.9 21.5 104 285-401 315-419 (866)
166 COG5181 HSH155 U2 snRNP splice 96.5 0.032 6.9E-07 55.9 11.5 150 196-354 605-759 (975)
167 KOG3113 Uncharacterized conser 96.5 0.0024 5.3E-08 56.3 3.5 51 15-68 109-163 (293)
168 KOG3036 Protein involved in ce 96.5 0.21 4.6E-06 44.6 15.2 181 210-397 94-291 (293)
169 KOG1824 TATA-binding protein-i 96.4 0.26 5.6E-06 52.1 17.9 226 103-361 818-1043(1233)
170 KOG2259 Uncharacterized conser 96.4 0.033 7.1E-07 56.2 11.1 184 196-395 235-473 (823)
171 COG5540 RING-finger-containing 96.4 0.0031 6.7E-08 57.2 3.4 47 18-64 324-373 (374)
172 KOG1645 RING-finger-containing 96.3 0.0022 4.7E-08 60.6 2.1 59 18-76 5-69 (463)
173 KOG0213 Splicing factor 3b, su 96.3 0.038 8.1E-07 56.5 10.6 147 197-354 801-954 (1172)
174 PF04063 DUF383: Domain of unk 96.2 0.072 1.6E-06 46.6 11.1 121 256-377 9-157 (192)
175 KOG1248 Uncharacterized conser 96.2 0.41 8.9E-06 51.7 18.5 219 166-398 667-899 (1176)
176 COG5181 HSH155 U2 snRNP splice 96.1 0.21 4.5E-06 50.3 14.8 260 103-398 605-871 (975)
177 COG5231 VMA13 Vacuolar H+-ATPa 96.0 0.5 1.1E-05 44.0 15.6 223 121-353 166-427 (432)
178 KOG1061 Vesicle coat complex A 96.0 0.13 2.8E-06 53.0 13.1 262 105-402 124-420 (734)
179 KOG0804 Cytoplasmic Zn-finger 96.0 0.0045 9.8E-08 59.2 2.6 51 10-63 168-222 (493)
180 PF04063 DUF383: Domain of unk 95.9 0.087 1.9E-06 46.1 10.3 106 293-400 5-135 (192)
181 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.2 4.8E-05 45.5 22.0 246 102-354 117-406 (802)
182 COG5096 Vesicle coat complex, 95.8 0.41 9E-06 50.2 16.2 101 197-311 94-194 (757)
183 PF06371 Drf_GBD: Diaphanous G 95.7 0.029 6.3E-07 48.9 6.7 78 276-353 100-186 (187)
184 KOG1061 Vesicle coat complex A 95.7 0.17 3.7E-06 52.2 12.4 191 166-379 99-292 (734)
185 KOG4151 Myosin assembly protei 95.7 0.25 5.3E-06 51.2 13.6 199 186-395 495-697 (748)
186 KOG4151 Myosin assembly protei 95.6 0.31 6.7E-06 50.5 14.1 242 137-397 495-741 (748)
187 PF04078 Rcd1: Cell differenti 95.6 0.7 1.5E-05 42.0 14.8 221 166-396 8-261 (262)
188 KOG1077 Vesicle coat complex A 95.5 2.2 4.7E-05 44.0 19.1 251 121-399 128-400 (938)
189 KOG2259 Uncharacterized conser 95.4 0.33 7E-06 49.4 13.0 184 196-398 199-440 (823)
190 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.2 4.4E-06 38.6 9.3 67 325-395 27-95 (97)
191 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.16 3.5E-06 39.1 8.6 68 239-311 26-95 (97)
192 PF14570 zf-RING_4: RING/Ubox 95.3 0.014 3E-07 38.2 2.1 43 20-62 1-47 (48)
193 PF02891 zf-MIZ: MIZ/SP-RING z 95.2 0.02 4.4E-07 38.1 2.9 44 18-61 3-50 (50)
194 COG5627 MMS21 DNA repair prote 95.2 0.019 4E-07 50.3 3.4 56 18-73 190-249 (275)
195 PF05004 IFRD: Interferon-rela 95.2 3 6.6E-05 39.5 18.9 195 197-400 45-260 (309)
196 PF04078 Rcd1: Cell differenti 95.1 0.57 1.2E-05 42.6 12.7 153 121-280 67-227 (262)
197 COG5096 Vesicle coat complex, 95.1 1.1 2.3E-05 47.2 16.3 103 241-354 93-195 (757)
198 KOG1734 Predicted RING-contain 95.1 0.0067 1.5E-07 54.1 0.3 54 17-70 224-288 (328)
199 KOG1943 Beta-tubulin folding c 95.0 1.1 2.3E-05 48.3 16.1 153 239-399 340-502 (1133)
200 KOG3800 Predicted E3 ubiquitin 95.0 0.019 4.1E-07 52.1 2.8 49 19-67 2-55 (300)
201 PF14447 Prok-RING_4: Prokaryo 94.9 0.015 3.3E-07 38.8 1.6 46 18-66 8-53 (55)
202 smart00744 RINGv The RING-vari 94.9 0.034 7.3E-07 36.9 3.2 41 19-59 1-49 (49)
203 KOG2999 Regulator of Rac1, req 94.9 0.44 9.5E-06 47.4 12.0 153 242-398 85-243 (713)
204 PF06025 DUF913: Domain of Unk 94.8 4.5 9.8E-05 39.5 19.4 225 123-365 3-243 (379)
205 PF05004 IFRD: Interferon-rela 94.7 1.2 2.6E-05 42.2 14.6 153 195-354 86-257 (309)
206 COG5109 Uncharacterized conser 94.7 0.02 4.4E-07 52.2 2.4 42 18-59 337-383 (396)
207 PF08045 CDC14: Cell division 94.6 0.17 3.6E-06 46.2 8.0 96 121-222 108-205 (257)
208 PF06371 Drf_GBD: Diaphanous G 94.6 0.79 1.7E-05 39.8 12.3 117 101-222 65-185 (187)
209 KOG1039 Predicted E3 ubiquitin 94.6 0.026 5.7E-07 53.5 3.0 49 15-63 159-221 (344)
210 PF12717 Cnd1: non-SMC mitotic 94.6 2.7 5.9E-05 36.3 16.3 93 208-313 1-93 (178)
211 PF11698 V-ATPase_H_C: V-ATPas 94.6 0.097 2.1E-06 41.6 5.6 81 230-311 32-114 (119)
212 PRK14707 hypothetical protein; 94.6 8.7 0.00019 44.8 22.0 282 96-396 199-487 (2710)
213 PF14668 RICTOR_V: Rapamycin-i 94.5 0.26 5.7E-06 35.6 7.3 66 258-323 3-69 (73)
214 KOG0828 Predicted E3 ubiquitin 94.5 0.027 5.8E-07 54.6 2.7 51 14-64 568-635 (636)
215 KOG0825 PHD Zn-finger protein 94.3 0.011 2.4E-07 60.3 -0.3 45 19-64 125-172 (1134)
216 PF12717 Cnd1: non-SMC mitotic 94.2 2 4.3E-05 37.2 13.7 109 167-294 2-112 (178)
217 PF08324 PUL: PUL domain; Int 94.1 0.53 1.1E-05 43.6 10.6 191 197-391 65-268 (268)
218 KOG1078 Vesicle coat complex C 94.0 3.7 8E-05 42.9 16.8 247 121-397 262-532 (865)
219 COG5175 MOT2 Transcriptional r 94.0 0.034 7.5E-07 51.2 2.3 50 16-66 14-67 (480)
220 KOG2274 Predicted importin 9 [ 94.0 6 0.00013 42.1 18.3 192 167-370 505-705 (1005)
221 KOG4172 Predicted E3 ubiquitin 93.9 0.015 3.2E-07 38.5 -0.2 44 19-62 9-53 (62)
222 KOG2611 Neurochondrin/leucine- 93.8 2 4.3E-05 42.3 13.8 127 245-377 16-162 (698)
223 PF11701 UNC45-central: Myosin 93.8 0.34 7.5E-06 41.0 8.0 143 197-350 5-155 (157)
224 KOG1788 Uncharacterized conser 93.8 1.5 3.2E-05 47.1 13.7 258 125-399 663-984 (2799)
225 PF12460 MMS19_C: RNAPII trans 93.7 2.5 5.4E-05 42.0 15.2 127 195-334 271-411 (415)
226 PF12719 Cnd3: Nuclear condens 93.7 5.2 0.00011 37.7 16.6 158 166-336 40-208 (298)
227 PF11701 UNC45-central: Myosin 93.6 0.9 2E-05 38.4 10.2 144 243-392 6-154 (157)
228 KOG1785 Tyrosine kinase negati 93.6 0.029 6.3E-07 52.9 1.1 47 19-65 371-418 (563)
229 PF08569 Mo25: Mo25-like; Int 93.6 7 0.00015 37.4 21.5 206 188-399 69-285 (335)
230 PF11793 FANCL_C: FANCL C-term 93.5 0.018 3.9E-07 41.4 -0.4 47 17-63 2-66 (70)
231 PF11698 V-ATPase_H_C: V-ATPas 93.4 0.085 1.8E-06 42.0 3.3 70 147-222 44-113 (119)
232 PF08045 CDC14: Cell division 93.4 1.1 2.3E-05 41.0 10.8 96 300-396 108-206 (257)
233 COG5194 APC11 Component of SCF 93.4 0.077 1.7E-06 38.2 2.7 43 19-63 33-81 (88)
234 KOG2274 Predicted importin 9 [ 93.3 1.9 4.2E-05 45.6 13.6 221 166-398 463-690 (1005)
235 PF05918 API5: Apoptosis inhib 93.2 7.1 0.00015 39.9 17.2 133 102-267 23-158 (556)
236 KOG1240 Protein kinase contain 93.2 0.94 2E-05 49.3 11.3 138 202-354 585-725 (1431)
237 KOG4692 Predicted E3 ubiquitin 93.1 0.056 1.2E-06 50.2 2.1 47 16-63 421-467 (489)
238 PF02985 HEAT: HEAT repeat; I 93.1 0.16 3.5E-06 29.9 3.4 29 241-271 1-29 (31)
239 PF08569 Mo25: Mo25-like; Int 93.0 5.2 0.00011 38.3 15.3 144 166-314 136-285 (335)
240 KOG1493 Anaphase-promoting com 92.9 0.031 6.7E-07 39.8 0.1 49 15-63 29-81 (84)
241 PF12460 MMS19_C: RNAPII trans 92.9 5.3 0.00011 39.6 16.0 187 196-399 190-396 (415)
242 PF06025 DUF913: Domain of Unk 92.9 5.2 0.00011 39.1 15.4 81 122-207 127-208 (379)
243 KOG0827 Predicted E3 ubiquitin 92.8 0.066 1.4E-06 50.5 2.2 44 18-62 5-55 (465)
244 KOG1001 Helicase-like transcri 92.6 0.052 1.1E-06 56.6 1.3 45 18-63 455-500 (674)
245 COG5215 KAP95 Karyopherin (imp 92.3 10 0.00022 38.5 16.3 264 117-398 379-669 (858)
246 KOG1060 Vesicle coat complex A 92.2 17 0.00038 38.3 18.9 171 105-311 38-208 (968)
247 KOG0567 HEAT repeat-containing 92.2 2.4 5.2E-05 38.6 11.0 132 93-269 145-278 (289)
248 PRK14707 hypothetical protein; 92.1 30 0.00065 40.8 21.9 272 104-394 165-442 (2710)
249 KOG0211 Protein phosphatase 2A 92.1 13 0.00029 39.6 18.1 251 121-397 372-625 (759)
250 KOG0883 Cyclophilin type, U bo 92.0 0.12 2.6E-06 48.8 2.7 50 17-67 40-89 (518)
251 COG5209 RCD1 Uncharacterized p 91.8 2 4.4E-05 38.0 9.8 150 122-279 118-276 (315)
252 PF05290 Baculo_IE-1: Baculovi 91.5 0.22 4.9E-06 39.8 3.4 50 16-65 79-134 (140)
253 PF05918 API5: Apoptosis inhib 91.5 1.7 3.6E-05 44.3 10.3 123 206-351 33-159 (556)
254 COG5215 KAP95 Karyopherin (imp 91.3 18 0.0004 36.7 20.6 272 105-399 136-439 (858)
255 cd03569 VHS_Hrs_Vps27p VHS dom 91.3 1.6 3.5E-05 36.2 8.6 76 325-400 41-117 (142)
256 KOG1571 Predicted E3 ubiquitin 91.3 0.11 2.3E-06 48.9 1.7 46 13-62 301-346 (355)
257 PF08324 PUL: PUL domain; Int 91.3 3.2 6.8E-05 38.4 11.6 169 104-281 65-241 (268)
258 cd03568 VHS_STAM VHS domain fa 91.1 1.7 3.7E-05 36.1 8.5 75 326-400 38-113 (144)
259 COG5218 YCG1 Chromosome conden 91.1 8.1 0.00018 39.3 14.2 101 282-390 90-192 (885)
260 KOG2611 Neurochondrin/leucine- 91.0 18 0.00038 36.0 18.9 217 171-397 29-274 (698)
261 PF14668 RICTOR_V: Rapamycin-i 90.8 1.5 3.2E-05 31.8 6.8 67 212-283 4-70 (73)
262 PF02985 HEAT: HEAT repeat; I 90.6 0.71 1.5E-05 27.1 4.3 30 368-398 1-30 (31)
263 PF08167 RIX1: rRNA processing 90.5 2.3 5.1E-05 36.2 9.1 110 195-311 25-142 (165)
264 COG5209 RCD1 Uncharacterized p 90.4 5.7 0.00012 35.3 11.3 148 212-364 117-277 (315)
265 PF12530 DUF3730: Protein of u 90.4 13 0.00029 33.6 16.7 191 166-379 14-215 (234)
266 KOG1943 Beta-tubulin folding c 90.3 15 0.00033 40.0 16.3 195 195-400 341-576 (1133)
267 KOG4535 HEAT and armadillo rep 90.3 0.53 1.2E-05 46.2 5.4 183 169-354 407-603 (728)
268 cd03561 VHS VHS domain family; 90.1 2.4 5.3E-05 34.6 8.6 76 326-401 38-116 (133)
269 KOG1058 Vesicle coat complex C 90.0 28 0.00061 36.6 18.3 31 240-272 317-347 (948)
270 KOG2025 Chromosome condensatio 90.0 16 0.00035 38.0 15.5 116 145-280 84-199 (892)
271 PF12719 Cnd3: Nuclear condens 89.9 10 0.00022 35.7 13.9 170 195-379 26-209 (298)
272 KOG4362 Transcriptional regula 89.8 0.11 2.3E-06 53.3 0.4 65 15-79 19-85 (684)
273 PF00790 VHS: VHS domain; Int 89.6 2 4.4E-05 35.5 7.8 75 326-400 43-121 (140)
274 COG5240 SEC21 Vesicle coat com 89.5 26 0.00057 35.7 18.3 85 124-223 247-331 (898)
275 KOG4265 Predicted E3 ubiquitin 89.4 0.23 5E-06 46.7 2.2 45 18-63 291-336 (349)
276 KOG2930 SCF ubiquitin ligase, 89.3 0.27 5.8E-06 37.3 2.0 27 34-61 80-106 (114)
277 KOG0915 Uncharacterized conser 89.3 21 0.00045 40.5 16.7 235 147-398 999-1266(1702)
278 smart00288 VHS Domain present 88.9 3.4 7.4E-05 33.8 8.6 75 326-400 38-114 (133)
279 KOG3161 Predicted E3 ubiquitin 88.2 0.33 7.1E-06 48.9 2.4 39 15-56 9-51 (861)
280 PF04641 Rtf2: Rtf2 RING-finge 87.9 0.43 9.4E-06 44.0 2.9 37 14-50 31-68 (260)
281 PF12031 DUF3518: Domain of un 87.8 1.7 3.7E-05 39.0 6.4 82 298-379 139-228 (257)
282 COG5219 Uncharacterized conser 87.8 0.28 6.2E-06 51.6 1.8 46 18-63 1470-1523(1525)
283 KOG2025 Chromosome condensatio 87.7 2 4.4E-05 44.2 7.6 101 282-390 84-186 (892)
284 KOG1020 Sister chromatid cohes 87.6 13 0.00028 42.0 13.9 159 213-395 795-958 (1692)
285 KOG1058 Vesicle coat complex C 87.6 11 0.00024 39.5 12.6 116 196-320 135-280 (948)
286 KOG1240 Protein kinase contain 87.4 26 0.00056 38.9 15.6 237 147-400 423-728 (1431)
287 KOG4535 HEAT and armadillo rep 87.2 1 2.2E-05 44.3 5.0 166 226-396 419-602 (728)
288 KOG3665 ZYG-1-like serine/thre 87.2 12 0.00026 39.8 13.3 175 218-396 494-696 (699)
289 KOG1991 Nuclear transport rece 87.0 50 0.0011 35.8 17.9 259 122-398 390-672 (1010)
290 cd03567 VHS_GGA VHS domain fam 86.9 4.7 0.0001 33.3 8.2 74 326-399 39-118 (139)
291 KOG4185 Predicted E3 ubiquitin 86.7 0.7 1.5E-05 43.6 3.7 62 19-80 5-77 (296)
292 PF11865 DUF3385: Domain of un 86.5 8.3 0.00018 32.7 9.7 144 147-311 11-156 (160)
293 KOG1967 DNA repair/transcripti 86.4 4.3 9.3E-05 43.2 9.2 148 194-348 866-1018(1030)
294 KOG2114 Vacuolar assembly/sort 86.2 0.38 8.2E-06 50.2 1.6 39 18-60 841-880 (933)
295 PF12031 DUF3518: Domain of un 86.1 2.1 4.6E-05 38.4 6.0 123 209-336 80-227 (257)
296 KOG4653 Uncharacterized conser 85.8 11 0.00024 40.0 11.8 181 201-397 733-918 (982)
297 KOG4464 Signaling protein RIC- 85.8 37 0.0008 33.2 18.8 85 166-252 110-199 (532)
298 KOG0301 Phospholipase A2-activ 85.6 45 0.00099 34.6 15.6 158 120-294 560-727 (745)
299 KOG4275 Predicted E3 ubiquitin 85.4 0.17 3.7E-06 45.9 -1.1 40 17-61 300-340 (350)
300 KOG4653 Uncharacterized conser 85.3 24 0.00052 37.6 13.8 211 170-394 744-961 (982)
301 COG5098 Chromosome condensatio 84.4 24 0.00053 36.7 13.1 152 240-397 240-415 (1128)
302 KOG0915 Uncharacterized conser 84.4 46 0.001 37.9 16.1 225 146-398 861-1111(1702)
303 KOG0298 DEAD box-containing he 83.7 0.34 7.4E-06 52.9 -0.0 47 14-61 1150-1197(1394)
304 KOG0301 Phospholipase A2-activ 83.6 59 0.0013 33.8 19.0 183 200-394 549-744 (745)
305 KOG1248 Uncharacterized conser 83.1 32 0.00069 38.0 14.1 184 205-398 664-857 (1176)
306 KOG0414 Chromosome condensatio 83.0 15 0.00033 40.4 11.7 141 196-354 920-1064(1251)
307 PF11707 Npa1: Ribosome 60S bi 82.9 35 0.00076 32.7 13.4 158 148-315 58-240 (330)
308 KOG1967 DNA repair/transcripti 82.6 13 0.00028 39.8 10.7 153 231-391 860-1018(1030)
309 KOG1820 Microtubule-associated 82.5 19 0.00041 38.8 12.2 173 117-311 266-442 (815)
310 PF14726 RTTN_N: Rotatin, an a 82.4 15 0.00032 28.3 8.5 72 235-308 25-96 (98)
311 KOG3665 ZYG-1-like serine/thre 82.3 21 0.00046 37.9 12.6 177 127-334 494-676 (699)
312 KOG2933 Uncharacterized conser 82.2 12 0.00027 34.9 9.4 139 196-351 89-231 (334)
313 KOG2137 Protein kinase [Signal 82.2 20 0.00044 37.3 11.8 132 239-379 388-520 (700)
314 cd03572 ENTH_epsin_related ENT 82.0 5.6 0.00012 31.9 6.4 72 327-398 40-120 (122)
315 KOG1991 Nuclear transport rece 81.3 16 0.00035 39.4 11.0 112 239-356 409-534 (1010)
316 KOG1814 Predicted E3 ubiquitin 81.2 1.9 4.1E-05 41.5 3.9 44 17-60 184-237 (445)
317 KOG2032 Uncharacterized conser 80.7 13 0.00028 37.0 9.4 140 255-397 271-416 (533)
318 KOG3002 Zn finger protein [Gen 80.7 1.7 3.7E-05 40.7 3.5 60 14-80 45-105 (299)
319 PF07814 WAPL: Wings apart-lik 80.7 58 0.0013 31.6 15.8 234 148-400 23-302 (361)
320 PF10367 Vps39_2: Vacuolar sor 80.4 0.62 1.3E-05 36.4 0.4 34 12-45 73-108 (109)
321 PF01347 Vitellogenin_N: Lipop 79.8 38 0.00083 35.5 13.7 94 194-308 485-585 (618)
322 KOG0825 PHD Zn-finger protein 79.3 1.7 3.6E-05 45.2 3.0 39 12-50 91-136 (1134)
323 KOG0211 Protein phosphatase 2A 78.7 99 0.0022 33.2 16.0 211 166-397 450-664 (759)
324 PF10363 DUF2435: Protein of u 78.5 8.4 0.00018 29.3 6.1 72 285-358 5-76 (92)
325 KOG2956 CLIP-associating prote 78.2 77 0.0017 31.6 15.5 187 102-311 286-476 (516)
326 PF14569 zf-UDP: Zinc-binding 78.1 2.3 5.1E-05 30.7 2.7 45 19-63 11-62 (80)
327 cd03569 VHS_Hrs_Vps27p VHS dom 78.1 15 0.00031 30.5 7.9 74 195-271 41-114 (142)
328 KOG0396 Uncharacterized conser 78.0 1.2 2.7E-05 42.1 1.6 48 18-65 331-381 (389)
329 KOG1940 Zn-finger protein [Gen 77.6 1.7 3.6E-05 40.0 2.3 42 18-60 159-204 (276)
330 KOG1820 Microtubule-associated 77.4 55 0.0012 35.4 13.7 182 203-397 261-443 (815)
331 PHA02825 LAP/PHD finger-like p 77.2 3.5 7.6E-05 34.4 3.8 46 17-63 8-59 (162)
332 cd03561 VHS VHS domain family; 75.9 36 0.00079 27.7 9.7 69 148-223 39-111 (133)
333 KOG2956 CLIP-associating prote 75.9 89 0.0019 31.2 15.6 144 196-354 330-477 (516)
334 PF14446 Prok-RING_1: Prokaryo 75.3 2.6 5.6E-05 28.3 2.1 28 18-45 6-37 (54)
335 cd00197 VHS_ENTH_ANTH VHS, ENT 75.1 19 0.00041 28.4 7.6 71 326-396 38-114 (115)
336 PLN02195 cellulose synthase A 75.1 2.7 5.9E-05 45.3 3.4 45 19-63 8-59 (977)
337 KOG1812 Predicted E3 ubiquitin 74.5 2.2 4.8E-05 41.7 2.4 33 17-49 146-182 (384)
338 PF14353 CpXC: CpXC protein 74.5 2 4.3E-05 34.9 1.8 47 17-63 1-49 (128)
339 PF08167 RIX1: rRNA processing 74.3 53 0.0012 27.8 11.3 113 284-400 26-146 (165)
340 KOG4739 Uncharacterized protei 74.2 1 2.2E-05 40.2 0.0 39 28-70 15-55 (233)
341 KOG2062 26S proteasome regulat 74.0 1E+02 0.0022 32.6 13.9 62 326-397 589-653 (929)
342 PF12830 Nipped-B_C: Sister ch 73.9 59 0.0013 28.2 14.0 145 241-398 9-168 (187)
343 KOG0414 Chromosome condensatio 73.9 38 0.00083 37.5 11.3 141 241-398 920-1065(1251)
344 PRK11088 rrmA 23S rRNA methylt 73.9 1.6 3.5E-05 40.5 1.3 26 17-42 2-30 (272)
345 PF07191 zinc-ribbons_6: zinc- 73.4 0.19 4.1E-06 35.6 -3.8 41 17-63 1-41 (70)
346 smart00288 VHS Domain present 73.2 25 0.00054 28.7 8.0 75 195-271 37-111 (133)
347 KOG1060 Vesicle coat complex A 73.0 1.4E+02 0.003 32.0 18.1 210 148-401 37-247 (968)
348 PLN02189 cellulose synthase 73.0 2.6 5.6E-05 45.8 2.6 45 19-63 36-87 (1040)
349 PF07800 DUF1644: Protein of u 72.8 1.3 2.8E-05 36.8 0.3 21 16-36 1-21 (162)
350 cd03567 VHS_GGA VHS domain fam 72.7 21 0.00045 29.5 7.4 70 284-354 39-116 (139)
351 cd03568 VHS_STAM VHS domain fa 72.4 31 0.00067 28.6 8.4 75 195-272 37-111 (144)
352 PF12530 DUF3730: Protein of u 72.3 75 0.0016 28.7 13.5 139 242-398 2-152 (234)
353 PF05605 zf-Di19: Drought indu 72.3 5 0.00011 27.0 3.1 38 16-60 1-39 (54)
354 PF11864 DUF3384: Domain of un 71.6 1.2E+02 0.0026 30.6 17.2 67 326-399 214-287 (464)
355 COG5220 TFB3 Cdk activating ki 70.8 1.1 2.4E-05 39.6 -0.6 47 16-62 9-63 (314)
356 PF03854 zf-P11: P-11 zinc fin 70.2 1.3 2.8E-05 28.7 -0.2 37 27-64 10-47 (50)
357 cd03565 VHS_Tom1 VHS domain fa 69.7 40 0.00086 27.8 8.5 75 326-400 39-118 (141)
358 KOG1020 Sister chromatid cohes 69.6 52 0.0011 37.5 11.4 114 146-279 816-929 (1692)
359 KOG1941 Acetylcholine receptor 69.4 2.3 5.1E-05 40.4 1.2 43 17-59 365-412 (518)
360 cd00730 rubredoxin Rubredoxin; 68.7 2.2 4.8E-05 28.3 0.6 14 12-25 29-42 (50)
361 PF10571 UPF0547: Uncharacteri 68.5 2.9 6.3E-05 23.5 1.0 22 19-40 2-25 (26)
362 smart00638 LPD_N Lipoprotein N 68.4 1.3E+02 0.0027 31.3 13.9 92 196-308 443-541 (574)
363 KOG2137 Protein kinase [Signal 67.6 26 0.00056 36.6 8.2 136 194-343 388-526 (700)
364 COG5116 RPN2 26S proteasome re 67.4 70 0.0015 32.7 10.8 119 239-376 550-671 (926)
365 PF01347 Vitellogenin_N: Lipop 67.1 1.7E+02 0.0036 30.6 19.3 208 103-351 348-586 (618)
366 PLN02638 cellulose synthase A 66.9 4.1 8.8E-05 44.5 2.5 45 19-63 19-70 (1079)
367 PF11865 DUF3385: Domain of un 66.7 61 0.0013 27.4 9.3 144 239-395 9-155 (160)
368 PLN02436 cellulose synthase A 66.7 4.2 9.1E-05 44.3 2.6 45 19-63 38-89 (1094)
369 COG5098 Chromosome condensatio 66.6 37 0.00081 35.5 8.9 110 148-272 301-416 (1128)
370 PF00301 Rubredoxin: Rubredoxi 66.3 2.4 5.1E-05 27.7 0.4 14 12-25 29-42 (47)
371 PF14225 MOR2-PAG1_C: Cell mor 65.9 1.1E+02 0.0024 28.2 13.5 66 240-311 188-253 (262)
372 KOG1243 Protein kinase [Genera 65.5 1.4E+02 0.0031 31.3 12.9 187 142-354 289-476 (690)
373 PF08506 Cse1: Cse1; InterPro 65.0 83 0.0018 30.7 11.0 131 120-266 227-370 (370)
374 PF12726 SEN1_N: SEN1 N termin 64.8 1.1E+02 0.0024 32.8 12.9 155 241-398 442-609 (727)
375 PF00790 VHS: VHS domain; Int 64.6 44 0.00095 27.4 7.8 74 195-270 42-117 (140)
376 KOG2062 26S proteasome regulat 64.4 45 0.00097 35.1 9.1 31 148-184 590-620 (929)
377 PF11864 DUF3384: Domain of un 63.9 1.7E+02 0.0037 29.5 20.5 88 285-379 215-313 (464)
378 PF08216 CTNNBL: Catenin-beta- 63.8 12 0.00025 29.3 3.9 45 256-300 60-104 (108)
379 PF14500 MMS19_N: Dos2-interac 63.7 1.2E+02 0.0027 27.9 14.3 217 166-400 12-240 (262)
380 PF11707 Npa1: Ribosome 60S bi 62.9 1.4E+02 0.0031 28.4 16.0 164 242-409 58-248 (330)
381 PF12074 DUF3554: Domain of un 62.8 1.5E+02 0.0032 28.4 13.4 210 145-377 21-254 (339)
382 PF11791 Aconitase_B_N: Aconit 62.1 33 0.00072 28.5 6.4 108 95-223 15-122 (154)
383 PF10363 DUF2435: Protein of u 62.1 30 0.00064 26.3 5.8 68 242-312 5-72 (92)
384 PF10521 DUF2454: Protein of u 61.9 67 0.0014 30.0 9.5 72 195-271 119-203 (282)
385 cd00350 rubredoxin_like Rubred 61.8 6.8 0.00015 23.3 1.8 11 51-61 16-26 (33)
386 PHA03096 p28-like protein; Pro 61.7 5.4 0.00012 37.1 2.0 41 19-59 180-230 (284)
387 PHA02862 5L protein; Provision 61.5 8.5 0.00019 31.5 2.8 44 19-63 4-53 (156)
388 smart00638 LPD_N Lipoprotein N 61.3 1.1E+02 0.0024 31.7 11.9 209 147-393 312-541 (574)
389 COG4530 Uncharacterized protei 60.4 8.6 0.00019 29.7 2.5 34 13-46 5-43 (129)
390 KOG2933 Uncharacterized conser 60.2 1.5E+02 0.0032 28.1 10.9 133 242-390 90-227 (334)
391 PLN02915 cellulose synthase A 60.2 6.4 0.00014 42.9 2.5 46 18-63 16-68 (1044)
392 PF10272 Tmpp129: Putative tra 59.8 7.1 0.00015 37.6 2.5 35 32-66 303-354 (358)
393 PF12906 RINGv: RING-variant d 59.6 7.2 0.00016 25.4 1.8 39 20-58 1-47 (47)
394 PF06844 DUF1244: Protein of u 58.5 6.5 0.00014 27.4 1.5 12 39-50 12-23 (68)
395 PF08746 zf-RING-like: RING-li 58.5 12 0.00025 23.9 2.6 39 20-58 1-43 (43)
396 PRK05978 hypothetical protein; 58.0 6.2 0.00013 32.8 1.6 30 19-64 35-64 (148)
397 PF01365 RYDR_ITPR: RIH domain 57.7 50 0.0011 29.1 7.5 117 275-398 35-170 (207)
398 COG5116 RPN2 26S proteasome re 57.2 50 0.0011 33.7 7.8 84 166-270 565-649 (926)
399 KOG2932 E3 ubiquitin ligase in 57.1 5 0.00011 37.1 1.0 41 19-62 92-133 (389)
400 PF04869 Uso1_p115_head: Uso1 56.4 1.8E+02 0.004 27.6 14.0 168 241-409 35-243 (312)
401 COG3813 Uncharacterized protei 56.3 12 0.00026 26.6 2.5 36 36-74 28-63 (84)
402 KOG2199 Signal transducing ada 55.9 61 0.0013 31.4 7.8 75 325-399 45-120 (462)
403 PF00096 zf-C2H2: Zinc finger, 54.1 4 8.6E-05 21.7 -0.1 14 18-31 1-14 (23)
404 PF14726 RTTN_N: Rotatin, an a 53.6 1E+02 0.0022 23.7 8.7 68 281-349 28-95 (98)
405 COG5218 YCG1 Chromosome conden 53.6 1.6E+02 0.0035 30.5 10.6 101 239-346 90-191 (885)
406 PF04821 TIMELESS: Timeless pr 53.4 1.9E+02 0.0041 26.7 14.8 125 122-272 12-150 (266)
407 COG5656 SXM1 Importin, protein 51.0 1E+02 0.0022 32.7 9.0 113 239-354 407-528 (970)
408 KOG4231 Intracellular membrane 50.8 18 0.00038 36.2 3.6 170 214-396 224-398 (763)
409 PRK06266 transcription initiat 50.2 18 0.0004 31.2 3.3 53 15-83 115-168 (178)
410 KOG2676 Uncharacterized conser 50.1 11 0.00024 35.9 2.0 67 123-194 375-441 (478)
411 PLN02400 cellulose synthase 50.0 8.7 0.00019 42.1 1.5 45 19-63 38-89 (1085)
412 KOG1832 HIV-1 Vpr-binding prot 49.4 43 0.00093 36.0 6.2 68 166-236 675-782 (1516)
413 KOG1243 Protein kinase [Genera 48.2 2.1E+02 0.0046 30.1 10.8 184 144-351 328-512 (690)
414 COG2176 PolC DNA polymerase II 47.9 16 0.00035 40.4 3.0 40 13-64 910-951 (1444)
415 PF05883 Baculo_RING: Baculovi 47.7 11 0.00024 30.6 1.4 43 17-60 26-77 (134)
416 smart00531 TFIIE Transcription 47.4 10 0.00022 31.6 1.3 13 52-64 123-135 (147)
417 cd00729 rubredoxin_SM Rubredox 46.9 11 0.00023 22.7 1.0 10 52-61 18-27 (34)
418 KOG0314 Predicted E3 ubiquitin 45.9 11 0.00024 37.3 1.4 65 13-79 215-283 (448)
419 PF14500 MMS19_N: Dos2-interac 45.8 2.5E+02 0.0053 25.9 20.0 215 107-354 4-237 (262)
420 KOG3842 Adaptor protein Pellin 45.6 19 0.00041 33.5 2.8 48 16-63 340-414 (429)
421 KOG0883 Cyclophilin type, U bo 45.4 11 0.00024 36.1 1.3 34 14-47 98-135 (518)
422 PF08506 Cse1: Cse1; InterPro 45.3 3E+02 0.0066 26.8 12.1 132 209-349 225-370 (370)
423 COG5656 SXM1 Importin, protein 45.0 4.2E+02 0.0092 28.4 19.4 146 122-279 388-536 (970)
424 PF13894 zf-C2H2_4: C2H2-type 44.2 7.7 0.00017 20.4 0.1 12 18-29 1-12 (24)
425 PF03130 HEAT_PBS: PBS lyase H 44.0 25 0.00055 19.6 2.2 26 211-250 1-26 (27)
426 PRK01343 zinc-binding protein; 43.8 19 0.00041 24.5 1.9 34 17-50 9-42 (57)
427 KOG3579 Predicted E3 ubiquitin 43.4 20 0.00043 32.9 2.5 33 17-49 268-304 (352)
428 PF10521 DUF2454: Protein of u 42.6 2.7E+02 0.0058 25.9 10.1 69 241-311 120-202 (282)
429 PF09723 Zn-ribbon_8: Zinc rib 42.6 7.1 0.00015 24.7 -0.3 25 34-60 10-34 (42)
430 KOG4718 Non-SMC (structural ma 42.2 19 0.00041 31.5 2.1 43 19-62 183-226 (235)
431 PF09538 FYDLN_acid: Protein o 41.8 21 0.00046 28.0 2.2 13 53-65 27-39 (108)
432 KOG1815 Predicted E3 ubiquitin 41.4 17 0.00037 36.4 2.0 36 15-50 68-104 (444)
433 PF08389 Xpo1: Exportin 1-like 40.8 1.9E+02 0.0041 23.2 10.0 109 195-307 26-148 (148)
434 PF06906 DUF1272: Protein of u 40.7 37 0.0008 23.0 2.8 24 37-63 29-52 (57)
435 TIGR02300 FYDLN_acid conserved 40.2 20 0.00043 28.8 1.8 12 16-27 8-19 (129)
436 cd03572 ENTH_epsin_related ENT 39.8 1.4E+02 0.0031 23.9 6.7 40 284-323 39-80 (122)
437 KOG1087 Cytosolic sorting prot 39.7 85 0.0018 31.6 6.5 70 326-395 39-110 (470)
438 PF13251 DUF4042: Domain of un 39.5 2.5E+02 0.0055 24.3 11.2 118 147-274 40-177 (182)
439 TIGR00373 conserved hypothetic 39.4 24 0.00052 29.8 2.4 15 52-66 128-142 (158)
440 PF06012 DUF908: Domain of Unk 39.3 1.1E+02 0.0024 29.2 7.2 76 258-334 238-325 (329)
441 PLN03086 PRLI-interacting fact 39.3 39 0.00084 34.8 4.1 51 13-63 449-515 (567)
442 smart00834 CxxC_CXXC_SSSS Puta 39.1 22 0.00048 21.9 1.6 11 52-62 26-36 (41)
443 KOG4231 Intracellular membrane 38.8 26 0.00057 35.1 2.8 71 242-313 329-400 (763)
444 PF11791 Aconitase_B_N: Aconit 38.7 1.2E+02 0.0026 25.4 6.1 26 326-351 95-120 (154)
445 KOG3899 Uncharacterized conser 38.3 16 0.00035 33.5 1.2 28 38-65 328-367 (381)
446 KOG2032 Uncharacterized conser 38.1 4.4E+02 0.0096 26.7 17.7 139 166-311 271-414 (533)
447 KOG3970 Predicted E3 ubiquitin 37.5 73 0.0016 28.2 5.0 61 19-79 52-124 (299)
448 PRK14559 putative protein seri 37.4 27 0.00058 36.7 2.8 35 19-66 3-41 (645)
449 KOG1992 Nuclear export recepto 37.3 5.7E+02 0.012 27.8 13.0 155 240-400 498-671 (960)
450 PF13811 DUF4186: Domain of un 37.2 25 0.00054 27.4 1.9 20 29-49 64-86 (111)
451 COG1675 TFA1 Transcription ini 36.5 55 0.0012 28.1 4.0 32 52-83 132-164 (176)
452 PF04388 Hamartin: Hamartin pr 36.5 5E+02 0.011 27.6 12.0 61 337-397 80-140 (668)
453 PF13251 DUF4042: Domain of un 36.4 2.8E+02 0.0062 24.0 10.5 109 198-312 43-174 (182)
454 COG3492 Uncharacterized protei 36.4 18 0.00039 27.0 0.9 12 39-50 43-54 (104)
455 KOG4464 Signaling protein RIC- 35.6 4.5E+02 0.0098 26.0 14.3 142 186-336 41-198 (532)
456 KOG1566 Conserved protein Mo25 35.3 4E+02 0.0087 25.3 17.2 221 142-377 75-310 (342)
457 PF04499 SAPS: SIT4 phosphatas 35.1 3.1E+02 0.0067 27.8 9.8 80 318-398 56-150 (475)
458 PF01365 RYDR_ITPR: RIH domain 34.9 82 0.0018 27.7 5.2 127 137-273 34-171 (207)
459 PF10274 ParcG: Parkin co-regu 34.4 3.1E+02 0.0067 23.8 10.8 114 284-400 39-167 (183)
460 PF09889 DUF2116: Uncharacteri 34.4 71 0.0015 22.0 3.5 16 51-66 2-17 (59)
461 KOG4524 Uncharacterized conser 34.3 2.1E+02 0.0046 31.3 8.6 93 284-378 804-900 (1014)
462 PF06012 DUF908: Domain of Unk 34.2 2.3E+02 0.0049 27.1 8.4 79 210-291 237-324 (329)
463 smart00734 ZnF_Rad18 Rad18-lik 34.2 18 0.0004 20.2 0.6 9 19-27 3-11 (26)
464 PF06676 DUF1178: Protein of u 33.9 50 0.0011 27.5 3.3 37 34-70 9-51 (148)
465 COG5236 Uncharacterized conser 33.8 32 0.0007 32.4 2.4 73 16-89 60-135 (493)
466 PF14663 RasGEF_N_2: Rapamycin 33.3 69 0.0015 25.4 4.0 40 284-323 9-48 (115)
467 KOG0392 SNF2 family DNA-depend 33.2 3.4E+02 0.0073 31.0 10.0 178 209-400 143-328 (1549)
468 KOG3268 Predicted E3 ubiquitin 33.0 35 0.00076 29.0 2.2 31 33-63 188-228 (234)
469 COG3809 Uncharacterized protei 32.5 8.4 0.00018 27.8 -1.2 14 18-31 2-15 (88)
470 COG1773 Rubredoxin [Energy pro 32.5 22 0.00048 24.0 0.8 14 12-25 31-44 (55)
471 PF10915 DUF2709: Protein of u 32.4 37 0.00081 29.2 2.3 33 18-59 88-120 (238)
472 smart00567 EZ_HEAT E-Z type HE 32.1 87 0.0019 17.6 3.3 28 210-251 2-29 (30)
473 PRK00420 hypothetical protein; 32.0 17 0.00038 28.6 0.3 13 51-63 39-51 (112)
474 KOG1788 Uncharacterized conser 31.9 1.3E+02 0.0028 33.4 6.6 80 275-354 900-982 (2799)
475 PRK04023 DNA polymerase II lar 31.6 34 0.00074 37.3 2.4 45 17-64 626-675 (1121)
476 KOG2593 Transcription initiati 31.6 38 0.00083 33.1 2.6 39 13-63 124-164 (436)
477 PF04499 SAPS: SIT4 phosphatas 31.2 4E+02 0.0087 27.0 9.9 78 276-354 55-148 (475)
478 KOG1992 Nuclear export recepto 31.1 5.9E+02 0.013 27.7 11.0 177 147-336 499-706 (960)
479 PF12660 zf-TFIIIC: Putative z 30.6 13 0.00028 28.6 -0.6 45 18-62 15-65 (99)
480 PF12773 DZR: Double zinc ribb 30.5 44 0.00096 21.7 2.1 12 52-63 29-40 (50)
481 PF12783 Sec7_N: Guanine nucle 30.4 2.2E+02 0.0049 23.9 7.0 83 191-277 69-152 (168)
482 PF07923 N1221: N1221-like pro 30.4 80 0.0017 29.6 4.6 53 239-293 59-126 (293)
483 COG4068 Uncharacterized protei 30.3 88 0.0019 21.4 3.3 26 51-76 7-32 (64)
484 PF14631 FancD2: Fanconi anaem 30.1 6.4E+02 0.014 29.7 12.2 96 166-273 448-544 (1426)
485 PF14663 RasGEF_N_2: Rapamycin 29.9 1.1E+02 0.0023 24.3 4.5 39 241-281 9-47 (115)
486 PF06416 DUF1076: Protein of u 29.9 41 0.0009 26.3 2.0 47 17-64 40-92 (113)
487 KOG1566 Conserved protein Mo25 29.8 5E+02 0.011 24.7 14.2 143 167-314 139-288 (342)
488 PF12874 zf-met: Zinc-finger o 29.5 17 0.00036 19.6 -0.1 15 18-32 1-15 (25)
489 PF14666 RICTOR_M: Rapamycin-i 29.2 4.3E+02 0.0092 23.8 11.6 129 256-397 78-225 (226)
490 PHA00626 hypothetical protein 28.4 53 0.0011 22.2 2.0 7 19-25 2-8 (59)
491 PF14205 Cys_rich_KTR: Cystein 28.4 22 0.00048 23.9 0.3 13 16-28 3-15 (55)
492 KOG1609 Protein involved in mR 28.3 42 0.00091 31.6 2.4 51 13-63 73-134 (323)
493 PRK14892 putative transcriptio 28.3 36 0.00077 26.2 1.4 37 12-62 16-52 (99)
494 PF12171 zf-C2H2_jaz: Zinc-fin 27.9 35 0.00077 18.9 1.1 15 18-32 2-16 (27)
495 PF14225 MOR2-PAG1_C: Cell mor 27.7 4.9E+02 0.011 24.0 16.9 148 241-402 61-222 (262)
496 PF08216 CTNNBL: Catenin-beta- 27.4 3.1E+02 0.0066 21.5 7.1 72 299-379 28-99 (108)
497 COG4049 Uncharacterized protei 27.3 19 0.0004 24.2 -0.2 16 15-30 15-30 (65)
498 COG1645 Uncharacterized Zn-fin 27.0 20 0.00044 29.0 -0.1 10 18-27 29-38 (131)
499 PF10274 ParcG: Parkin co-regu 26.8 4.2E+02 0.0092 23.0 10.4 72 241-314 39-111 (183)
500 KOG1832 HIV-1 Vpr-binding prot 26.7 7.5E+02 0.016 27.3 10.8 158 212-378 326-491 (1516)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=8.4e-30 Score=278.47 Aligned_cols=286 Identities=20% Similarity=0.151 Sum_probs=250.1
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
...+..+++.|+++....+.+..|+..|+.+++.++++|..+.+ .|++|.|+.+|.++ +..+++.|+.+|.+
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-------~~~vk~nAaaaL~n 84 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-------TLGAKVNAAAVLGV 84 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 45789999999977433445788999999999999999999986 89999999999877 57899999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc---hhhhhHhhchhhhHHHHHHHhhcCCC-C
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS---QELRAQISNLDEIFEGVIDILKNLSS-Y 255 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~-~ 255 (418)
++.++ +++..|+..|+|++|+.+|++++.+.|+.|+++|++|+ .+ ++++..|+...|+||+|+.+++++.. +
T Consensus 85 LS~~e-~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS---~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 85 LCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVS---SGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HhcCH-HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHH---cCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 99886 89999999999999999999999999999999999994 43 66676766668999999999998731 1
Q ss_pred hhhhHHHHHHHHHHccccccHHH-HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHH
Q 014817 256 PRGLKVGIKALFALCLVKQTRYK-AVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKT 333 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~-i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~ 333 (418)
..+++.++.+|+||+.+.+++.. ++++|+||.|+.+|.++++..+..|+.+|.+++.+ ++.+..+++ +|+||.|+++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~L 239 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKL 239 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHH
Confidence 23567788999999999998865 58999999999999999999999999999888855 779999998 5999999999
Q ss_pred Hhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC--------CHHHHHHHHHHHHHHHhh
Q 014817 334 ILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC--------TDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 334 l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~~A~~~L~~l~~~ 398 (418)
|.+ .+..++++|+++|.+||.++++.+..+++.|+++.|+.++.++. +...++.|.|+|.|++..
T Consensus 240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 977 45689999999999999999999999999999999999997541 245699999999999984
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-30 Score=246.54 Aligned_cols=284 Identities=15% Similarity=0.165 Sum_probs=248.8
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
.+-++.+|+.|...+.+. .+++|+++|.++++++.+.-..++++|++|.++.+|.++ +..+++.|+++|+|+
T Consensus 108 ~G~v~~lV~~l~~~~~~~-lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPT-LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGNI 179 (514)
T ss_pred cCcHHHHHHHHccCCChh-HHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhcc
Confidence 367899999998765433 479999999999999999999999999999999999988 589999999999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
+.+...+|..+.+.|++++|+.++...+. ....+++|+|.|| +...+-...+.....++|.|..++.+. |+++.
T Consensus 180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl---crgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl 254 (514)
T KOG0166|consen 180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL---CRGKNPSPPFDVVAPILPALLRLLHST--DEEVL 254 (514)
T ss_pred ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH---HcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHH
Confidence 99998999999999999999999988765 7888999999999 444432333333356999999999999 99999
Q ss_pred HHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-C
Q 014817 260 KVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-I 337 (418)
Q Consensus 260 ~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~ 337 (418)
..|+|||++|+.+. +....++++|++|.|+.+|.+.+..++..|+.++.|++.+.+...+.+-..|+++.|..++.. .
T Consensus 255 ~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~ 334 (514)
T KOG0166|consen 255 TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP 334 (514)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc
Confidence 99999999999665 566667899999999999999999999999999999997665555444446999999999985 5
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
....++.|+|+|.||+.|+.+..+.++++|+++.|+.+|+++ .-+.|+.|+|++.|+...
T Consensus 335 ~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 335 KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSS 394 (514)
T ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhccc
Confidence 666899999999999999999999999999999999999888 899999999999998874
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=3.3e-28 Score=266.05 Aligned_cols=285 Identities=17% Similarity=0.137 Sum_probs=247.1
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|++++. ..+..|++.|+.++..+++++..++++|++|.|+++|.++ +.+++++|+++|.|++
T Consensus 446 ggIp~LV~LL~s~s~--~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-------~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 446 EGVQLLISLLGLSSE--QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-------SQKAKEDSATVLWNLC 516 (2102)
T ss_pred CcHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 468899999998754 3468899999999999999999999999999999999877 5799999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch--------------------------------
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-------------------------------- 229 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-------------------------------- 229 (418)
.+.++.+..+.+.|++++|+++|++++.+.+..|+++|.+|+.....+
T Consensus 517 ~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 517 CHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 877566777778999999999999999999999999999994211110
Q ss_pred --hhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817 230 --ELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALAT 306 (418)
Q Consensus 230 --~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~ 306 (418)
+.........|+++.|+++++++ ++..++.|+++|.+++.+. +++..++..|+|++|+.+|.+++.+++..++++
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~A 674 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARA 674 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence 00111112358999999999999 8999999999999999764 578889999999999999999999999999999
Q ss_pred HHHHhc--CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817 307 VELLCR--IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 307 L~~L~~--~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 384 (418)
|.+|+. .++++..+++ .|+|++|++++...+..+.+.|+.+|.||+. .++.+.++.++|+++.|+++|+++ +++.
T Consensus 675 L~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~ 751 (2102)
T PLN03200 675 LAALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREG-TLEG 751 (2102)
T ss_pred HHHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhC-ChHH
Confidence 999994 4556667777 5999999999999999999999999999999 667788899999999999999888 9999
Q ss_pred HHHHHHHHHHHHhhCC
Q 014817 385 KRKAQLLLKLLRDSWP 400 (418)
Q Consensus 385 ~~~A~~~L~~l~~~~~ 400 (418)
|+.|+++|..|+.+..
T Consensus 752 k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 752 KRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998754
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.4e-28 Score=221.24 Aligned_cols=287 Identities=11% Similarity=0.110 Sum_probs=249.3
Q ss_pred CChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 99 AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 99 ~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
++.+-++++|++|.....+. .+++|+++|.+++++....-...+++|++|.++++|.+. +.+|+++++++|+
T Consensus 111 IdaGvVpRfvefm~~~q~~m-lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-------~~~V~eQavWALG 182 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDM-LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-------EDDVREQAVWALG 182 (526)
T ss_pred HhccccHHHHHHHHhcchhH-HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-------hHHHHHHHHHHhc
Confidence 46677899999997655444 368999999999998877777889999999999999888 5789999999999
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCC--HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSS--IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP 256 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 256 (418)
|++.+.+.+|..+.+.|++++++.+|.+.. .....+++|+|.||+.|..-...-..| ..++|.|.+++... ++
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~--D~ 257 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR--DP 257 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc--CH
Confidence 999999899999999999999999998775 477889999999995433333333344 34899999999998 89
Q ss_pred hhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh
Q 014817 257 RGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~ 335 (418)
++...|+|||.+|+.... ....+++.|..+.|+++|.+++..++..++..+.|+....+.+.+++-..|+++.+-.+|.
T Consensus 258 evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs 337 (526)
T COG5064 258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS 337 (526)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence 999999999999997764 5566689999999999999999999999999999999776665555544699999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
+....+++.|+|++.||+.|+.+..+.+++++.+|+|+.+|.+. .-.+|+.|+|++.|...+.
T Consensus 338 ~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg 400 (526)
T COG5064 338 SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGG 400 (526)
T ss_pred ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccc
Confidence 98889999999999999999999999999999999999999877 8899999999999987754
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.9e-27 Score=211.61 Aligned_cols=278 Identities=16% Similarity=0.127 Sum_probs=247.0
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.+..|+.++.++... .+..|++.+.+++.- +.+|..|...|++.+|.++-++. +-.+|.+++.+|.++..
T Consensus 127 Gl~~Li~qmmtd~ve--vqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaksk-------dirvqrnatgaLlnmTh 196 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVE--VQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSK-------DIRVQRNATGALLNMTH 196 (550)
T ss_pred ChHHHHHHhcCCCcE--EEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccc-------hhhHHHHHHHHHHHhhh
Confidence 345566666665433 457899999999976 67899999999999999966665 46899999999999987
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh--hHHHHHHHhhcCCCChhhhH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE--IFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.. ++|+.++.+|++|.||.+++++++.++++++.+|.++ +.+..+|+.++. .| +++.|+.+.+++ ++.++-
T Consensus 197 s~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI---aVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~--s~kvkc 269 (550)
T KOG4224|consen 197 SR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI---AVDRRARKILAQ-AEPKLVPALVDLMDDG--SDKVKC 269 (550)
T ss_pred hh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh---hhhHHHHHHHHh-cccchHHHHHHHHhCC--ChHHHH
Confidence 77 8999999999999999999999999999999999999 899999998876 45 999999999999 899999
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD 339 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~ 339 (418)
.|..+|.||+...+....++++|.+|.++++|+++........+.+++|++-++-+---|++ +|++.+||.+|.. .+.
T Consensus 270 qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnE 348 (550)
T KOG4224|consen 270 QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNE 348 (550)
T ss_pred HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCch
Confidence 99999999999999999999999999999999998888888889999999998888888888 5999999999988 566
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
..|-+|..+||+|+..++..+..+.+.|++++|..++..+ +-..|..-...+..|+-+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND 407 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc
Confidence 6999999999999998888999999999999999999776 8888888777777777653
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-26 Score=220.89 Aligned_cols=285 Identities=18% Similarity=0.145 Sum_probs=240.0
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
....+..+.|.+. +.+..+...++.+.+... ..-......|.+|.+|.+|...+ ++.++..|+++|.|++.
T Consensus 68 ~~~~~~~~~S~~~--~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~------~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 68 LELMLAALYSDDP--QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD------NPTLQFEAAWALTNIAS 139 (514)
T ss_pred hHHHHHHHhCCCH--HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC------ChhHHHHHHHHHHHHhc
Confidence 5667777777754 346889999998876422 22333445699999999998664 68999999999999999
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
+..+..+.++++|+++.++++|.+++..+++.|+|+|.|++ ......|..+ ...|++++|+.++.... .....+++
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIa--gds~~~Rd~v-l~~g~l~pLl~~l~~~~-~~~~lRn~ 215 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIA--GDSPDCRDYV-LSCGALDPLLRLLNKSD-KLSMLRNA 215 (514)
T ss_pred CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccc--cCChHHHHHH-HhhcchHHHHHHhcccc-chHHHHHH
Confidence 98888899999999999999999999999999999999995 4555656555 45899999999999883 34788999
Q ss_pred HHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 263 IKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
.|+|+|||.+......+ .-..++|.|..+|.+.|.++...|+|+|+.|+.++..+..++-.+|+++.||.+|.+.+..+
T Consensus 216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 99999999987543333 33679999999999999999999999999999666555555444799999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
+..|++++.||+.|+....+.+++.|+++.|..++.....+.+|+.|+|++.|+....+
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 99999999999999999999999999999999999855477799999999999987543
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.8e-26 Score=205.56 Aligned_cols=277 Identities=13% Similarity=0.163 Sum_probs=244.3
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.+..+.+ |..+. +...+..|..+|.++.. +.++|+.++.+|++|.|+.++.+. +..+|..+..++.+++
T Consensus 167 GaL~pltr-Laksk-dirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 167 GALEPLTR-LAKSK-DIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAISNIA 236 (550)
T ss_pred cchhhhHh-hcccc-hhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhhhhh
Confidence 34445555 43332 33346789999999985 578999999999999999999988 5899999999999999
Q ss_pred CChhHHHhhcccCC--chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 182 LTETECMEIASDAD--KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 182 ~~~~~~~~~i~~~g--~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
.+. ..|+.+++.+ .++.||.++.++++.++..|..+|++| +.+.++...|.+ .|.+|.|+++|+++ .....
T Consensus 237 Vd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl---asdt~Yq~eiv~-ag~lP~lv~Llqs~--~~pli 309 (550)
T KOG4224|consen 237 VDR-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL---ASDTEYQREIVE-AGSLPLLVELLQSP--MGPLI 309 (550)
T ss_pred hhH-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh---cccchhhhHHHh-cCCchHHHHHHhCc--chhHH
Confidence 887 7899998777 999999999999999999999999999 788888888876 79999999999988 56677
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI 337 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~ 337 (418)
.....+++|++.++-|-..|+++|.+.+|+++|..++. +++-.|..+|++|+. +..++..+++ .|+|+.+.+++..+
T Consensus 310 lasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDG 388 (550)
T ss_pred HHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcC
Confidence 77888999999999999999999999999999987654 599999999999997 6678888888 59999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.-.+|+.-..++..|+. +...+..+.+.|.++.|+....+. +.+++.+|+.+|-||+..
T Consensus 389 pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 389 PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD 447 (550)
T ss_pred ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence 99999999999999888 667788899999999999999888 999999999999999874
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.5e-25 Score=200.33 Aligned_cols=282 Identities=16% Similarity=0.098 Sum_probs=236.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
..++.+.+.|.|. +.+.+..|....|.+.+ +....-+..+++|.+|.+++++.... +.-.+-.|+++|.|+
T Consensus 71 ~elp~lt~~l~Sd--Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q------~~mlqfEAaWalTNi 142 (526)
T COG5064 71 SELPQLTQQLFSD--DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ------RDMLQFEAAWALTNI 142 (526)
T ss_pred hhhHHHHHHHhhh--HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc------hhHHHHHHHHHHhhh
Confidence 4568888888876 45566889999987665 44445566788999999999996543 345678899999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
+.+.....+.+++.|++|.++++|.+++.++++.++|+|.|++ ...+..|..+ ...|++++|+.++.+...+....+
T Consensus 143 aSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA--GDS~~~RD~v-L~~galeplL~ll~ss~~~ismlR 219 (526)
T COG5064 143 ASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA--GDSEGCRDYV-LQCGALEPLLGLLLSSAIHISMLR 219 (526)
T ss_pred ccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc--CCchhHHHHH-HhcCchHHHHHHHHhccchHHHHH
Confidence 9888566777789999999999999999999999999999994 4445555555 447999999999997743568999
Q ss_pred HHHHHHHHHccccc---cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817 261 VGIKALFALCLVKQ---TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337 (418)
Q Consensus 261 ~a~~aL~~L~~~~~---n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 337 (418)
++.|+|.|||.... +...+ .-++|.|..++.+.|+++...|+|++..|+..+..+..++-+.|..+.||++|.+.
T Consensus 220 n~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 220 NATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence 99999999997643 33333 23799999999999999999999999999988766665555579999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+..++..|++.+.||..|+....+.+++.|+++.+..+|++. -+++|+.|+|++.|+..
T Consensus 298 sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITA 356 (526)
T COG5064 298 SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITA 356 (526)
T ss_pred cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeeccccc
Confidence 999999999999999999999999999999999999999777 78999999999999875
No 9
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=2.5e-19 Score=161.60 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=230.9
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
+..-..+++.+|-.+....|+ +.++.+...++.+|....+ +.++....+..+..-+...+.+|+.+++.++
T Consensus 120 ~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~-----~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 120 NESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE-----SEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred chhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 333456788888888766554 6678889999999976543 5677777788888777777789999999999
Q ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhh---------chhhhHHHHHHHhhcCCCChhhhHHHHHHH
Q 014817 197 ITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQIS---------NLDEIFEGVIDILKNLSSYPRGLKVGIKAL 266 (418)
Q Consensus 197 i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~---------~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL 266 (418)
++.+...| ++|...+...++++++.| ..+|+.|..++ ...|++..|++.++.+. +|.....++.+|
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l---~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~-dp~~L~~l~~tl 266 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRAL---LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI-DPDSLVSLSTTL 266 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHh---cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC-CccHHHHHHHHH
Confidence 99999766 456667888899999999 67776665443 22578999999999987 799999999999
Q ss_pred HHHccccccHHHHHHcCchHHHHHHhcC-CCc---ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChH
Q 014817 267 FALCLVKQTRYKAVAAGAAETLVDRLAD-FDK---CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDR 340 (418)
Q Consensus 267 ~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~ 340 (418)
..|+..++.+..+.+.|++..|++++.+ ++. .+...++.+|+.|++++.++..|++. |+.+.++.++.. .++.
T Consensus 267 ~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~ 345 (461)
T KOG4199|consen 267 KALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPL 345 (461)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChH
Confidence 9999999999999999999999999986 333 35578999999999999999999995 999999999976 7999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhhCCCCC
Q 014817 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC-TDRAKRKAQLLLKLLRDSWPQDS 403 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~~~~~~ 403 (418)
+-+.++.++.-||-++|+....+++.|+-...++.+..++ ...++++|++++||+..+++.++
T Consensus 346 Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 346 VIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999997653 46689999999999999988664
No 10
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.85 E-value=7.8e-22 Score=144.35 Aligned_cols=72 Identities=47% Similarity=0.940 Sum_probs=63.3
Q ss_pred CCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
+|++|+||||+++|+|||++++||||||.+|++|+.++..+||.|++++...++.||..|++.|+.|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999888999999999999999999999999999999874
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.1e-18 Score=157.36 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=233.2
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
...-+|+.|....++.+-....+..++..|..++.||+.|++.|+.+.+...|.... ...+.+.+.++++.|..
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g------k~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG------KTRTVRELYDAIRALLT 219 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC------ccHHHHHHHHHHHHhcC
Confidence 345567777554444444467888899999999999999999999999998887663 23567778888888877
Q ss_pred Chh---------HHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817 183 TET---------ECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL 252 (418)
Q Consensus 183 ~~~---------~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~ 252 (418)
+++ ...+.|++.|++..|++.|+-+ ++.+...++.+|..| +..++.+..|.+ .|++..|++++.+.
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l---AVr~E~C~~I~e-~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL---AVRDEICKSIAE-SGGLDTLLRCIDDS 295 (461)
T ss_pred CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH---HHHHHHHHHHHH-ccCHHHHHHHHhhh
Confidence 762 2355677788999999999876 688889999999999 899999999976 79999999999985
Q ss_pred CCCh---hhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCC
Q 014817 253 SSYP---RGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLC-RIPAGCAEFAEHALT 326 (418)
Q Consensus 253 ~~~~---~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~ 326 (418)
. +. ...+.+++.|+.|+.+++++..|++.|+.+.++.++. +.++.+.+.++.++..|+ +.++...++++ +|+
T Consensus 296 n-~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~ 373 (461)
T KOG4199|consen 296 N-EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGA 373 (461)
T ss_pred c-hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cch
Confidence 2 23 3557899999999999999999999999999999885 457788899999999999 77888899999 599
Q ss_pred hHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 327 VPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 327 i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
-...|+.|+. ....+|++|++.+.||+.++.+++..++..|+ ++|+.....+ ++..+..|..+||.|--
T Consensus 374 a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 374 ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 9999999988 56678999999999999988888887666655 7777777777 88888899999998754
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=2.5e-18 Score=175.24 Aligned_cols=253 Identities=16% Similarity=0.132 Sum_probs=216.8
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS 201 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv 201 (418)
..++..|.+++. +..+...+++.|+++.|+++|.+. +.+++..++..|.+|+... +|+..+.+.|+++.|+
T Consensus 267 rv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 267 RVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHH
Confidence 345666778874 578888899999999999999877 6889999999999999998 7999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH
Q 014817 202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA 281 (418)
Q Consensus 202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~ 281 (418)
+++.+++.+.+..++++|.|| +.++++|..+.. .|++|.|+.+|.++ ..+..++.+|++||..+++|..+..
T Consensus 338 kLl~s~~~~l~~~aLrlL~NL---Sfd~~~R~~mV~-~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNL---SFDPELRSQMVS-LGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHh---CcCHHHHHHHHH-CCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHhh
Confidence 999999999999999999999 999999999976 79999999999865 3556799999999999999999999
Q ss_pred cCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH
Q 014817 282 AGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360 (418)
Q Consensus 282 ~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~ 360 (418)
.+++|.++++|.+ ++..+...++.++.||+.++.+.+.+.+. |+++.|++...+... .-.++.+.||+.+++..+
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g-~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG-NGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc-CcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHH
Confidence 9999999998765 45667778899999999999999999985 899999998766332 234578999999775555
Q ss_pred HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 361 ~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..+. +.+..|+.++..+.++...-.+.++|.||..
T Consensus 486 ~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 486 ELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 5443 5888999998776578888888888888875
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.83 E-value=2.3e-19 Score=185.66 Aligned_cols=272 Identities=15% Similarity=0.103 Sum_probs=230.8
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccccc-----CCChhHHHHHHHHHhcCCCChhHHHhhcc-cCC
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKT-----ASSPELAHESLALLVMFPLTETECMEIAS-DAD 195 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g 195 (418)
..|+..|.++.- ++++|..|-+.|++..+..||.-+.+.-+ ..+..++..|+.+|.||.+++..||..+. ..|
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 478888888864 68999999999999999998853322111 01355789999999999999988999998 579
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccc-c
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLV-K 273 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~-~ 273 (418)
+++.+|..|.+...++....+.+|+||+ =..|.+-..+....|-+..|+... +.. .+...++.+.|||||+.+ .
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLS--WRAD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLS--WRADSNMKKVLRETGSVTALAACALRNK--KESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhcc--ccccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHHHHHhhhhhccc
Confidence 9999999999999999999999999994 345555555545578888888864 444 678999999999999976 5
Q ss_pred ccHHHHHH-cCchHHHHHHhcC----CCcccHHHHHHHHHHHh----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817 274 QTRYKAVA-AGAAETLVDRLAD----FDKCDAERALATVELLC----RIPAGCAEFAEHALTVPLLVKTILKISDRATEY 344 (418)
Q Consensus 274 ~n~~~i~~-~G~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~ 344 (418)
+|+..|+. -|++..||.+|.- ....+.+.+-++|+|.+ .++..|+.+.++ .++..|++.|++.+..+-.+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeec
Confidence 79999998 6999999999963 24578899999998766 577889999997 99999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 345 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++++||||..++++-++.+++.|++..|..|+++. +..+-+-++..|+||-.+..
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999877 88899999999999999873
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=7.6e-18 Score=171.72 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI 246 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv 246 (418)
..+...+..+|.||+.+. .....+.+.|+++.|+++|.+++.+....++.+|.+| +...+|+..|+. .|+|++|+
T Consensus 263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL---Si~~ENK~~m~~-~giV~kL~ 337 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL---SIFKENKDEMAE-SGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH---cCCHHHHHHHHH-cCCHHHHH
Confidence 356778888999999887 7888889999999999999999999999999999999 899999999976 79999999
Q ss_pred HHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCC
Q 014817 247 DILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT 326 (418)
Q Consensus 247 ~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 326 (418)
+++.++ +...+..++++|+|||.+.++|..|++.|++|.|+.+|.++ ..+..++.+|.+|+..+++|..+... ++
T Consensus 338 kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T-dc 412 (708)
T PF05804_consen 338 KLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT-DC 412 (708)
T ss_pred HHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc-ch
Confidence 999998 88999999999999999999999999999999999999863 45677999999999999999988885 89
Q ss_pred hHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 327 VPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 327 i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++.+++++.. ++..++..++.++.|++. ++++.+.|.+.|+++.|+.......++ ...+++||++.|.
T Consensus 413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 413 IPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD 481 (708)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence 9999998876 566677788999999999 778889999999999999888665332 2346888888885
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=8e-18 Score=167.92 Aligned_cols=284 Identities=17% Similarity=0.125 Sum_probs=228.4
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
.++++.+.+|.+..+..+ ..|...+..+|.++...|..+.+.|+|+.|+.+|... +.+|+.+|+++|.||.
T Consensus 233 ~~lpe~i~mL~~q~~~~q--snaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNLv 303 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQ--SNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNLV 303 (717)
T ss_pred cccHHHHHHHhccChhhh--HHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhhh
Confidence 457888999998765544 7799999999999999999999999999999999888 6899999999999999
Q ss_pred CChhH--HHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC----
Q 014817 182 LTETE--CMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS---- 254 (418)
Q Consensus 182 ~~~~~--~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---- 254 (418)
.+... |+-.|.+.++|+.++++|+. ++.++++..+.+|+|| +.+|..|..|.. .+++.|.+-+-.+-+
T Consensus 304 f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL---SS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~ 378 (717)
T KOG1048|consen 304 FGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL---SSNDALKMLIIT--SALSTLTDNVIIPHSGWEE 378 (717)
T ss_pred cccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc---cchhHHHHHHHH--HHHHHHHHhhcccccccCC
Confidence 87654 89999999999999999986 7999999999999999 788999998864 378888876543210
Q ss_pred --------ChhhhHHHHHHHHHHcc-ccccHHHHHH-cCchHHHHHHhc------CCCcccHHHHHHHHHHHhcCHh---
Q 014817 255 --------YPRGLKVGIKALFALCL-VKQTRYKAVA-AGAAETLVDRLA------DFDKCDAERALATVELLCRIPA--- 315 (418)
Q Consensus 255 --------~~~~~~~a~~aL~~L~~-~~~n~~~i~~-~G~v~~Lv~lL~------~~~~~~~~~a~~~L~~L~~~~~--- 315 (418)
+..+..++..+|+|+++ ..+.|.+|-+ .|.|..|+..++ ..+...+++++.+|+||+-.-+
T Consensus 379 ~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Ev 458 (717)
T KOG1048|consen 379 EPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEV 458 (717)
T ss_pred CCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhc
Confidence 25678899999999997 5778999977 799999999886 3467788999999999982111
Q ss_pred ---H--------------------------HHHHHh---------------------ccCChHHHHHHHh-cCChHHHHH
Q 014817 316 ---G--------------------------CAEFAE---------------------HALTVPLLVKTIL-KISDRATEY 344 (418)
Q Consensus 316 ---~--------------------------~~~i~~---------------------~~g~i~~Lv~~l~-~~~~~~~~~ 344 (418)
. +.+..+ +.-+|..-..+|. ..++...|.
T Consensus 459 p~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEa 538 (717)
T KOG1048|consen 459 PPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEA 538 (717)
T ss_pred CHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHH
Confidence 0 011000 0012333333443 368889999
Q ss_pred HHHHHHHHhcCC----HHHHHHH-HhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 345 AAGALAALCSAS----ERCQRDA-VSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 345 A~~~L~~l~~~~----~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++++|.|++.+. ...+..+ .++.+.+.|+++|+.+ ++.+.+.++.+|+||+....
T Consensus 539 saGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 539 SAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred hhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCch
Confidence 999999999943 3455556 7789999999999888 99999999999999998654
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.71 E-value=1.1e-17 Score=119.50 Aligned_cols=63 Identities=54% Similarity=0.939 Sum_probs=59.9
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 80 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~ 80 (418)
+|.||||+++|+|||+++|||+|||.||.+|+.+ ..+||.|+++++..++.+|..+++.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 77899999999999999999999999987
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=6.8e-16 Score=154.24 Aligned_cols=284 Identities=15% Similarity=0.122 Sum_probs=229.2
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh--hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK--NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
+.|.+||..|.....+. +..|.++|++|..++.. |+..|.+.|+|+.++++|+... |.++++....+|.|
T Consensus 275 ggI~kLv~Ll~~~~~ev--q~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~------D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEV--QRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ------DDEVRELITGILWN 346 (717)
T ss_pred ccHHHHHHHhcCCcHHH--HHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc------chHHHHHHHHHHhc
Confidence 45788999998876544 58899999999876555 9999999999999999998753 57999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhc---C-----------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 180 FPLTETECMEIASDADKITSLSSLLF---H-----------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~---~-----------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
|+..+ ..+..++.. ++..|..-+- + .+.++..+++..|+|++ +..++.++.+.+..|.|..|
T Consensus 347 LSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlS--s~~~eaR~~mr~c~GLIdaL 422 (717)
T KOG1048|consen 347 LSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLS--SAGQEAREQMRECDGLIDAL 422 (717)
T ss_pred ccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcccc--chhHHHHHHHhhccchHHHH
Confidence 99875 666666543 3444443221 1 12566789999999996 67999999999888999999
Q ss_pred HHHhhcCC----C-------------------------------------------------------------------
Q 014817 246 IDILKNLS----S------------------------------------------------------------------- 254 (418)
Q Consensus 246 v~lL~~~~----~------------------------------------------------------------------- 254 (418)
+..+++.. .
T Consensus 423 ~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p 502 (717)
T KOG1048|consen 423 LFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP 502 (717)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence 98876200 0
Q ss_pred -----------------------------ChhhhHHHHHHHHHHccccc-----cHHHH-HHcCchHHHHHHhcCCCccc
Q 014817 255 -----------------------------YPRGLKVGIKALFALCLVKQ-----TRYKA-VAAGAAETLVDRLADFDKCD 299 (418)
Q Consensus 255 -----------------------------~~~~~~~a~~aL~~L~~~~~-----n~~~i-~~~G~v~~Lv~lL~~~~~~~ 299 (418)
+..+.++++.+|-||+...- .+..+ ....++|+|+++|..++..+
T Consensus 503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~v 582 (717)
T KOG1048|consen 503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDV 582 (717)
T ss_pred ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchH
Confidence 34567777778888875442 34444 45778999999999999999
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC------ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHH
Q 014817 300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI------SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLL 373 (418)
Q Consensus 300 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 373 (418)
+..++.+|.||+.+..+++.|.. ++++-||..|-.. +.+.-..++.+|++|...+......+.+.+++++|+
T Consensus 583 v~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~ 660 (717)
T KOG1048|consen 583 VRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR 660 (717)
T ss_pred HHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH
Confidence 99999999999999999999984 7899999999763 256778899999999988999999999999999999
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 374 LLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 374 ~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+..+.-+++.-+.|..+|..|-.+.
T Consensus 661 ~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 661 LISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 98877658899999999999887754
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.69 E-value=6.5e-15 Score=133.94 Aligned_cols=197 Identities=14% Similarity=0.048 Sum_probs=172.8
Q ss_pred HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817 142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEI 221 (418)
Q Consensus 142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~ 221 (418)
+.+.+-++.|+.+|.... ++.+++.|+.+|.+.+... .++..+.+.|+++.+..+|..+++.++..|+++|.|
T Consensus 8 ~l~~~~l~~Ll~lL~~t~------dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTE------DPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred CcCHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 456778899999998764 6899999999999998777 899999999999999999999999999999999999
Q ss_pred HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817 222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE 301 (418)
Q Consensus 222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 301 (418)
+ +.+.++...|- ..++.+.+.+.+...+..++.+++++|.||+..++....+. +.++.++++|.+++..++.
T Consensus 81 l---s~~~en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 81 L---SVNDENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred c---CCChhhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHH
Confidence 9 89999999883 25777777655543377899999999999998888877764 4799999999999999999
Q ss_pred HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhc
Q 014817 302 RALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCS 354 (418)
Q Consensus 302 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~ 354 (418)
.++++|.+|+.++.....+... +++..++.++.. .+..+...++....||..
T Consensus 153 ~vLk~L~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 153 QVLKVLVNLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9999999999999998888884 899999998876 477888999999999966
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.61 E-value=6.6e-14 Score=127.37 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=176.2
Q ss_pred ccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHc
Q 014817 192 SDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALC 270 (418)
Q Consensus 192 ~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~ 270 (418)
.+++-++.|+.+|+. .++.+++.+..++.+. +..+.++..|.. .|+++.+..+|.++ ++.++..|+++|.|++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~---aaf~~nq~~Ir~-~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNS---AAFPFNQDIIRD-LGGISLIGSLLNDP--NPSVREKALNALNNLS 82 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh---ccChhHHHHHHH-cCCHHHHHHHcCCC--ChHHHHHHHHHHHhcC
Confidence 577889999999985 4799999999999999 888999999976 79999999999998 8999999999999999
Q ss_pred cccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817 271 LVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA 348 (418)
Q Consensus 271 ~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~ 348 (418)
.+.+|+..+-. .++.+.+.+.+. +..++..++.+|.+|+..++.+..+. +.++.++.++..++..++.+++++
T Consensus 83 ~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 83 VNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred CChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHH
Confidence 99999988743 577777766543 56788899999999998888777764 459999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCCC
Q 014817 349 LAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDS 403 (418)
Q Consensus 349 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 403 (418)
|.||+. ++.....++.++++..++.+++...+...-..+..+..|+..++....
T Consensus 158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~ 211 (254)
T PF04826_consen 158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEA 211 (254)
T ss_pred HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccc
Confidence 999999 888889999999999999999877678888899999999999887543
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-12 Score=122.58 Aligned_cols=291 Identities=13% Similarity=0.065 Sum_probs=222.4
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|.+...|++.+. -.+.-++|.+.|..+.++|..+.+.||-..++++|+.-.....+.+++....+...|.|..
T Consensus 87 ~~le~Lrq~psS~d~ev--~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEV--HEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHhCCCCCcccH--HHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 34555555555553333 3667899999999999999999999998888888864322111235677777888999998
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 182 LTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
.+.++.+.++++.|+++.|+.++.-+ +....+.......||. +...++-..+..+......|++++.... .++..
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nll--s~~~e~~~~~~~d~sl~~~l~~ll~~~v-~~d~~ 241 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLL--SFVCEMLYPFCKDCSLVFMLLQLLPSMV-REDID 241 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHH--HHHHHhhhhhhccchHHHHHHHHHHHhh-ccchh
Confidence 88888999999999999999988654 5666677777777775 3333333333333567888999998765 78899
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCc-------ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDK-------CDAERALATVELLCRIPAGCAEFAEHALTVPLLV 331 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 331 (418)
+.....|...+.++..+-.+++.|.+..++++++. .+- .....++.....|...++.-+++...+..+..++
T Consensus 242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~ 321 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE 321 (604)
T ss_pred hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999975 222 2223344445555567777778877544888899
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh----CCCHHHHHHHHHHHHHHHhh
Q 014817 332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS----DCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~A~~~L~~l~~~ 398 (418)
.++.+.+...+..+.-++.|+++++. ....+++.|.+.+|++.|.. +++-+.+.++..+||||.--
T Consensus 322 sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 322 SWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 99988888999999999999999554 45558899999999999954 45788999999999999753
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.49 E-value=3.7e-13 Score=140.47 Aligned_cols=225 Identities=16% Similarity=0.094 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHH-HhhcccCCch
Q 014817 120 SRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETEC-MEIASDADKI 197 (418)
Q Consensus 120 ~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i 197 (418)
.|.+|+-+|.+|..++..||..+.. .|+++.+|.-|.+. ..+++-..+.+|+||++..+.+ ++.+.+.|-+
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-------peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsV 439 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-------PEELLQVYASVLRNLSWRADSNMKKVLRETGSV 439 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-------hHHHHHHHHHHHHhccccccccHHHHHHhhhhH
Confidence 3677888999999988889988765 69999999999877 3567777778999999987554 6666688989
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC--CCChhhhHHHHHHHHHHcc---
Q 014817 198 TSLSSL-LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCL--- 271 (418)
Q Consensus 198 ~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~~a~~aL~~L~~--- 271 (418)
..|+.. |+..........+.+||||+ +...+||..|....|++..||.+|... .....+.+.|-+.|+|.++
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLS--AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA 517 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLS--AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA 517 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhh--hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence 888874 45556677788899999997 778899999988899999999999754 2135678899999999875
Q ss_pred -ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817 272 -VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349 (418)
Q Consensus 272 -~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L 349 (418)
+.+.|..+.+.+.+..|++.|.+..--++.+++++|+||+ .+++.++.+.++ |+|+.|..++.+.+..+-+-++.+|
T Consensus 518 t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrnLIhSKhkMIa~GSaaAL 596 (2195)
T KOG2122|consen 518 TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRNLIHSKHKMIAMGSAAAL 596 (2195)
T ss_pred ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHHHHhhhhhhhhhhHHHHH
Confidence 4556777788999999999999988889999999999998 678899999996 9999999999999999999999999
Q ss_pred HHHhc
Q 014817 350 AALCS 354 (418)
Q Consensus 350 ~~l~~ 354 (418)
.|+-.
T Consensus 597 rNLln 601 (2195)
T KOG2122|consen 597 RNLLN 601 (2195)
T ss_pred HHHhc
Confidence 99877
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=2.1e-10 Score=115.83 Aligned_cols=278 Identities=17% Similarity=0.129 Sum_probs=211.2
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
..+.|...|..+++. -+.-+++.|.++...++.....+.+.+.++.++.+|.++ +.++.+.|..+|..++.
T Consensus 78 ~~~~L~~gL~h~~~~--Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-------d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPK--VRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-------DLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhC
Confidence 345566666666543 357789999999888777777788899999999999887 57899999999999998
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
.. ...+.+...+.+..|..++...+..+|..+..++.+++ +..++....+.. .|+++.++..|+++ |.-++.++
T Consensus 149 ~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~~~~~~-sgll~~ll~eL~~d--DiLvqlna 222 (503)
T PF10508_consen 149 HP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA--SHSPEAAEAVVN-SGLLDLLLKELDSD--DILVQLNA 222 (503)
T ss_pred Cc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH--hcCHHHHHHHHh-ccHHHHHHHHhcCc--cHHHHHHH
Confidence 76 55666778888999999998888899999999999995 566666666654 79999999999997 89999999
Q ss_pred HHHHHHHccccccHHHHHHcCchHHHHHHhcCC--Cc---c-cHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHh
Q 014817 263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DK---C-DAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~---~-~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~ 335 (418)
+..|..|+..+.+...+.+.|+++.|..++.+. ++ . ..-..+....+++.. +... .......+..+...+.
T Consensus 223 lell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~ 300 (503)
T PF10508_consen 223 LELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLE 300 (503)
T ss_pred HHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhC
Confidence 999999999888999999999999999999743 22 1 223344666667763 2211 1111234445555556
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHH-Hh-cChHHHHHHHHh---hCCCHHHHHHHHHHHHHHHhh
Q 014817 336 KISDRATEYAAGALAALCSASERCQRDA-VS-AGVLTQLLLLVQ---SDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~-~~-~g~i~~L~~ll~---~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+.+...+..|..++..|+. +.+-+..+ .. .+.++..+..+. ..++..+|-.+...|.++-..
T Consensus 301 s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 301 SQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred CCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 6889999999999999997 55655555 33 345555555543 233678888888888888544
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.41 E-value=6.1e-11 Score=111.05 Aligned_cols=270 Identities=12% Similarity=0.067 Sum_probs=208.7
Q ss_pred HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcc-cccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH
Q 014817 125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTN-INVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL 203 (418)
Q Consensus 125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~ 203 (418)
...+...+ +++..+-.+++.|.++.+++++..- +..+..........+......|..+++..+.....+.++..++..
T Consensus 245 feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 44444444 6778899999999999999999752 111100012233445555566667774555555555599999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC---CCChhhhHHHHHHHHHHccccccHHHHH
Q 014817 204 LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALCLVKQTRYKAV 280 (418)
Q Consensus 204 L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~aL~~L~~~~~n~~~i~ 280 (418)
+++.+.+....++-+|.|+ +..|+++..++. .|.++.|+.+|... .++.+.+.+++.||+||.....|+..++
T Consensus 324 ~~S~d~~l~t~g~LaigNf---aR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNF---ARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred hcCCchhHHHHHHHHHHhh---hccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 9999999999999999999 899999999976 78999999998651 1267889999999999999999999999
Q ss_pred HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCChH-HHHHHHHHHHHHhcC--C
Q 014817 281 AAGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISDR-ATEYAAGALAALCSA--S 356 (418)
Q Consensus 281 ~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~~-~~~~A~~~L~~l~~~--~ 356 (418)
.+|++++++..+....+.++-.-++.|+.+....+ ...++..+...+..||.+-++++.. +.....+.|..+-++ .
T Consensus 400 ~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 400 PAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred ccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 99999999999998889999999999998886665 4455555555677777777665444 677777888777774 5
Q ss_pred HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 357 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
......+.+.|+++.++..+.+. +-..+..|.-+|-.+...+-
T Consensus 480 kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl 522 (604)
T KOG4500|consen 480 KDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYL 522 (604)
T ss_pred hhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhc
Confidence 56777888999999999999777 77777777777777766543
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=9.8e-12 Score=100.58 Aligned_cols=118 Identities=21% Similarity=0.194 Sum_probs=108.9
Q ss_pred HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817 278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 278 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~ 356 (418)
.+++.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+.+. |+++.++++|.+.++.++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467899999999999998889999999999999987 7888888885 99999999999999999999999999999977
Q ss_pred HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 357 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+.....+.+.|+++.|+.+++.. +...++.|.++|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 78888889999999999999877 99999999999999863
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.40 E-value=1.4e-13 Score=88.54 Aligned_cols=39 Identities=33% Similarity=0.703 Sum_probs=31.1
Q ss_pred CcCccccccCCeecCCCCcccHHHHHHHHHcCC---CCCCCC
Q 014817 20 CPISLELMCDPVTVCTGQTYDRPSIESWVATGN---TTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~---~~cp~~ 58 (418)
||||+++|+|||+++|||+||+.||++||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997542 358876
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=2.9e-10 Score=114.72 Aligned_cols=250 Identities=18% Similarity=0.105 Sum_probs=196.2
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.+..+++.|.... .+.+++..+.......+. .+..-.+.+...|.+. +.+..+.++.+|..+..
T Consensus 4 ~~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~~~-------~~e~v~~~~~iL~~~l~ 67 (503)
T PF10508_consen 4 WINELLEELSSKA----ERLEALPELKTELSSSPF-----LERLPEPVLFDCLNTS-------NREQVELICDILKRLLS 67 (503)
T ss_pred HHHHHHHHHhccc----chHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHhhc-------ChHHHHHHHHHHHHHHh
Confidence 3556677776652 246777777765443331 1122233377888766 35656777777776654
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
.. ..... ..+..+.|...|.++++.+|..+++.|.++ ..+.+....+....++++.++.++.++ +..+.+.|
T Consensus 68 ~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~---~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A 139 (503)
T PF10508_consen 68 AL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRI---ARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAA 139 (503)
T ss_pred cc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHH
Confidence 33 22222 567789999999999999999999999999 555555555555578999999999998 89999999
Q ss_pred HHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
..+|.+|+.+......+.+.+.++.|..++..++..++-.+..++..++. +++....+.. .|.++.++..+.+++..+
T Consensus 140 ~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLv 218 (503)
T PF10508_consen 140 IKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILV 218 (503)
T ss_pred HHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHH
Confidence 99999999998888888899999999999988777788889999999985 4566666666 599999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
|.+|+.+|..|+. .+...+-+.+.|++++|..++..
T Consensus 219 qlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~ 254 (503)
T PF10508_consen 219 QLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQD 254 (503)
T ss_pred HHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhc
Confidence 9999999999999 77888889999999999999964
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.33 E-value=1.9e-11 Score=98.93 Aligned_cols=113 Identities=24% Similarity=0.171 Sum_probs=102.8
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AG 316 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~ 316 (418)
.|+++.|++++.++ +...+..++++|.+++.. ++.+..+++.|+++.++.+|.+++..++..++++|.+|+.+. ..
T Consensus 6 ~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 6 AGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred cCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 68999999999988 899999999999999988 678889999999999999999989999999999999999776 45
Q ss_pred HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 317 CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 317 ~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
+..+.. .|+++.+++++...+..+++.|+++|.+||.
T Consensus 84 ~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 555666 5999999999999999999999999999873
No 28
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.5e-09 Score=105.92 Aligned_cols=291 Identities=21% Similarity=0.194 Sum_probs=218.8
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817 93 PTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE 172 (418)
Q Consensus 93 ~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~ 172 (418)
..|+.+...+.|++|+.++.++---. .|..|++.|..+++ ..|.... +.|+++|++.|..+.. ++++...
T Consensus 13 q~~k~~s~aETI~kLcDRvessTL~e-DRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~-----D~E~ik~ 82 (970)
T KOG0946|consen 13 QPPKQQSAAETIEKLCDRVESSTLLE-DRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYM-----DPEIIKY 82 (970)
T ss_pred CCCccccHHhHHHHHHHHHhhccchh-hHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccC-----CHHHHHH
Confidence 44566666788999999998764333 47789999999986 3555444 6789999999988763 8999999
Q ss_pred HHHHHhcCCCChh------HH----------Hhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHh
Q 014817 173 SLALLVMFPLTET------EC----------MEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI 235 (418)
Q Consensus 173 a~~~L~~l~~~~~------~~----------~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i 235 (418)
++..+.++..+++ +. ...+. ..+.|..|+..+...+-.+|..++..|.++.+ ....+.+..+
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls-~r~~e~q~~l 161 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLS-CRPTELQDAL 161 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHh-cCCHHHHHHH
Confidence 9999998876552 11 12333 57899999999999999999999999999975 6777888888
Q ss_pred hchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCC---Cc-ccHHHHHHHHHHH
Q 014817 236 SNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADF---DK-CDAERALATVELL 310 (418)
Q Consensus 236 ~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~---~~-~~~~~a~~~L~~L 310 (418)
....-+|..|+.+|.+. ...++..++-.|..|.....+..+++. .+++..|..++... +. -+++.|+.+|-||
T Consensus 162 l~~P~gIS~lmdlL~Ds--rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NL 239 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDS--REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNL 239 (970)
T ss_pred HHCchhHHHHHHHHhhh--hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 77788999999999998 788999999999999998888888776 79999999999742 34 4679999999999
Q ss_pred hcCHh-HHHHHHhccCChHHHHHHHhc---CChHHH----------HHHHHHHHHHhc-CCH-----HHHHHHHhcChHH
Q 014817 311 CRIPA-GCAEFAEHALTVPLLVKTILK---ISDRAT----------EYAAGALAALCS-ASE-----RCQRDAVSAGVLT 370 (418)
Q Consensus 311 ~~~~~-~~~~i~~~~g~i~~Lv~~l~~---~~~~~~----------~~A~~~L~~l~~-~~~-----~~~~~~~~~g~i~ 370 (418)
-.+.. +...+.+ .+.||.|.++|.. ++..+. -.|+.++..+.. +++ .++..+...+++.
T Consensus 240 LK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~ 318 (970)
T KOG0946|consen 240 LKNNISNQNFFRE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLD 318 (970)
T ss_pred HhhCcchhhHHhc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHH
Confidence 97665 5555555 5999999988765 332111 234455555554 322 2456788899999
Q ss_pred HHHHHHhhCC-CHHHHHHHHHHHHHHHh
Q 014817 371 QLLLLVQSDC-TDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 371 ~L~~ll~~~~-~~~~~~~A~~~L~~l~~ 397 (418)
.|..++-+++ ...++..+--++.+..+
T Consensus 319 ~Lc~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 319 VLCTILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred HHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 9999987663 44455554444444443
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=8.7e-12 Score=118.94 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=65.1
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
..+...|.||||.++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..|.++|+.|....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 467778999999999999999999999999999999986 468999999998778999999999999997654
No 30
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.25 E-value=5.1e-12 Score=107.41 Aligned_cols=60 Identities=32% Similarity=0.607 Sum_probs=51.8
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc---------------CCCCCCCCCCCCCCCCCcccH
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT---------------GNTTCPVTRSPLTDFTLIPNH 71 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~---------------~~~~cp~~~~~l~~~~l~~n~ 71 (418)
.+..++|.||||.+.++|||+++|||.||+.||.+|+.. +...||.|+..++...+.|..
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 355678999999999999999999999999999999852 235799999999888888765
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.6e-10 Score=109.59 Aligned_cols=197 Identities=18% Similarity=0.121 Sum_probs=161.7
Q ss_pred HHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHH
Q 014817 169 LAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDI 248 (418)
Q Consensus 169 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~l 248 (418)
....|+..|.|++.+. ..-..+.....+..||+.|...+.+........|..| +-.++|+..++. .|.++.|+++
T Consensus 279 LLrva~ylLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL---SIf~eNK~~M~~-~~iveKL~kl 353 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDI-SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL---SIFDENKIVMEQ-NGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh---hhhccchHHHHh-ccHHHHHHHh
Confidence 4455667788888665 4445556678899999999999999999999999999 899999999976 7999999999
Q ss_pred hhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817 249 LKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP 328 (418)
Q Consensus 249 L~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~ 328 (418)
+... +++.+...+..|+||+....++.+|+..|.+|.|..+|.+... ...|+..|..++.++..+..+.-. .+|+
T Consensus 354 fp~~--h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayT-dci~ 428 (791)
T KOG1222|consen 354 FPIQ--HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYT-DCIK 428 (791)
T ss_pred cCCC--CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHH-HHHH
Confidence 9998 8999999999999999999999999999999999999986432 346889999999988888888774 8999
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH
Q 014817 329 LLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV 376 (418)
Q Consensus 329 ~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 376 (418)
.+++.+.. .+.++...-+..-.|||. +..+.+.+.+-.++..|++..
T Consensus 429 ~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 429 LLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHH
Confidence 99998876 444455444444478888 666677777777777776544
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.1e-09 Score=99.56 Aligned_cols=281 Identities=13% Similarity=0.099 Sum_probs=209.3
Q ss_pred CCCCCCChHHHHHHHHHhhcCCCch-hhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817 94 TPKQPAEPSLVRTLLNQASSESNTY-GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE 172 (418)
Q Consensus 94 ~p~~~~~~~~i~~lv~~L~~~~~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~ 172 (418)
.|+...-..++.++.+.++..-..+ +....|+-.|.+++. +-..-..++..+++..||+.|... +.+....
T Consensus 252 ~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~-------n~~Ll~l 323 (791)
T KOG1222|consen 252 KPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRS-------NSSLLTL 323 (791)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHccc-------chHHHHH
Confidence 3444333567788888876542211 122345666667774 344555688889999999999877 5677888
Q ss_pred HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL 252 (418)
Q Consensus 173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~ 252 (418)
....|..|+.-. +|+..+.+.|.++.|+++....+++.+......|.|| +.+..++..++. .|.+|.|+.+|.+.
T Consensus 324 v~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNl---SFD~glr~KMv~-~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 324 VIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNL---SFDSGLRPKMVN-GGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhc---cccccccHHHhh-ccchHHHHHHhCCc
Confidence 888899999888 8999999999999999999999999999999999999 889999999976 79999999999976
Q ss_pred CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817 253 SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLCRIPAGCAEFAEHALTVPLLV 331 (418)
Q Consensus 253 ~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 331 (418)
. -...|+..|+.++.+++.+..+....+|+.+...+-++.. ++-...+..-.|||-+..+.+.+++. .++..|+
T Consensus 399 ~----~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceG-qgL~~LM 473 (791)
T KOG1222|consen 399 T----KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEG-QGLDLLM 473 (791)
T ss_pred c----cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecC-cchHHHH
Confidence 3 3456889999999999999999999999999998766543 44333344447889888888888884 7888888
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+.-...... --.+.+.||+.+....+..+++ .+.-|..++....++.---.+..+|.+|..
T Consensus 474 ~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 474 ERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred HHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 765442222 2345678888855555555444 456666777655456666667777777765
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.15 E-value=1.4e-09 Score=103.54 Aligned_cols=235 Identities=16% Similarity=0.150 Sum_probs=165.7
Q ss_pred hHHHHHHHhhcc-cccccCCChhHHHHHHHHHhcCCCChhHHHhhccc------CCchHHHHHHhcCCCHHHHHHHHHHH
Q 014817 147 VRAILSQVFFTN-INVKTASSPELAHESLALLVMFPLTETECMEIASD------ADKITSLSSLLFHSSIEVRVNSAALI 219 (418)
Q Consensus 147 ~i~~Lv~lL~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~~L~~~~~~~~~~a~~~L 219 (418)
....++.+|+.. . +.++....+..+..+..++......+.. .....++++++.+++..++..|+.+|
T Consensus 56 ~~~~~l~lL~~~~~------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iL 129 (312)
T PF03224_consen 56 YASLFLNLLNKLSS------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFIL 129 (312)
T ss_dssp ------HHHHHH---------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 466777777655 3 6788899998888776555344444432 23688999999999999999999999
Q ss_pred HHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHh-----
Q 014817 220 EIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS--YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRL----- 292 (418)
Q Consensus 220 ~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL----- 292 (418)
..|+ +..+...... . .+.++.++.++.+... +...+..++.+|.+|...++.|..+.+.|+++.|+++|
T Consensus 130 t~Ll--~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~ 205 (312)
T PF03224_consen 130 TSLL--SQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQAT 205 (312)
T ss_dssp HHHH--TSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH----
T ss_pred HHHH--HcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcc
Confidence 9995 3333322222 2 4688999998886421 23456899999999999999999999999999999999
Q ss_pred cCC--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH-HHHHHHHhcCh
Q 014817 293 ADF--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASE-RCQRDAVSAGV 368 (418)
Q Consensus 293 ~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~ 368 (418)
..+ +..++-.++-+++.|+-+++....+..+ +.|+.|+++++. ..+++.+-++.+|.|+...++ .....|+..|+
T Consensus 206 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~ 284 (312)
T PF03224_consen 206 NSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL 284 (312)
T ss_dssp -----HHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred cCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence 222 3467788999999999999999999996 799999999977 788899999999999998433 38888999999
Q ss_pred HHHHHHHHh-hCCCHHHHHHHHHHH
Q 014817 369 LTQLLLLVQ-SDCTDRAKRKAQLLL 392 (418)
Q Consensus 369 i~~L~~ll~-~~~~~~~~~~A~~~L 392 (418)
++.+-.+.. ...++.+.+--..+-
T Consensus 285 l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888755553 345777776554443
No 34
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=9e-09 Score=95.84 Aligned_cols=223 Identities=17% Similarity=0.077 Sum_probs=152.8
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
+..+.+.+++.+ ...|..|++.|..+-..... ..-+++.|..++..+. ++.|+..|+.+|+.+...
T Consensus 56 ~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~------d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 56 FRLAIELCSSKN--PIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDK------SACVRASAINATGHRCKK 121 (280)
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCC------CHHHHHHHHHHHhccccc
Confidence 344444444442 33466777777776432110 1125677776644432 578888888888887533
Q ss_pred hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI 263 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~ 263 (418)
... ....++..+...+.+.+..+|..++.+|..+ . . ..+++.|+.+|++. ++.++..|+
T Consensus 122 ~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---~----------~-~~ai~~L~~~L~d~--~~~VR~~A~ 180 (280)
T PRK09687 122 NPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSVI---N----------D-EAAIPLLINLLKDP--NGDVRNWAA 180 (280)
T ss_pred ccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc---C----------C-HHHHHHHHHHhcCC--CHHHHHHHH
Confidence 210 1223466677777778888888888888766 2 1 34788899999887 788999999
Q ss_pred HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHH
Q 014817 264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE 343 (418)
Q Consensus 264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~ 343 (418)
.+|.++....+ .+++.|+.+|.+.+..++..|+..|..+-. ..+++.|++.+.+++ ++.
T Consensus 181 ~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 181 FALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHH
Confidence 99998832221 467788999988888899999988876432 356888998887655 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817 344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK 393 (418)
Q Consensus 344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 393 (418)
.|+.+|.++.. + .+++.|..+++.+.+..++.+|.+.|.
T Consensus 240 ~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 240 LIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777776654 2 377899999975559999999988875
No 35
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.07 E-value=8.4e-11 Score=74.74 Aligned_cols=38 Identities=37% Similarity=0.815 Sum_probs=33.2
Q ss_pred CcCccccccCC-eecCCCCcccHHHHHHHHHcCCCCCCCC
Q 014817 20 CPISLELMCDP-VTVCTGQTYDRPSIESWVATGNTTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~ 58 (418)
||||.+.+++| ++++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6889986
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.03 E-value=8.1e-08 Score=93.32 Aligned_cols=278 Identities=12% Similarity=0.072 Sum_probs=191.0
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
...++..|... +......|...|..+...+..+.......-....|...|++.+ +...+..++..|..|...
T Consensus 103 ~~~fl~lL~~~--d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~------~~~~~~~~v~~L~~LL~~ 174 (429)
T cd00256 103 WEPFFNLLNRQ--DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT------NNDYVQTAARCLQMLLRV 174 (429)
T ss_pred hHHHHHHHcCC--chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC------CcchHHHHHHHHHHHhCC
Confidence 45566666654 3334567788888776543322111110112334555555442 355677778888887777
Q ss_pred hhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
+ +.|..+.+.++++.|+.+|+.. +.+.+.+++-+++-| +.+++....... .+.|+.|+++++... .+.+.+-
T Consensus 175 ~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL---SF~~~~~~~~~~-~~~i~~l~~i~k~s~-KEKvvRv 248 (429)
T cd00256 175 D-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL---TFNPHAAEVLKR-LSLIQDLSDILKEST-KEKVIRI 248 (429)
T ss_pred c-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH---hccHHHHHhhcc-ccHHHHHHHHHHhhh-hHHHHHH
Confidence 7 7899998888999999999763 468899999999999 778776666644 789999999999875 6789999
Q ss_pred HHHHHHHHcccc-------ccHHHHHHcCchHHHHHHhcC---CCcccHHHHHH-------HHHHHhcCH----------
Q 014817 262 GIKALFALCLVK-------QTRYKAVAAGAAETLVDRLAD---FDKCDAERALA-------TVELLCRIP---------- 314 (418)
Q Consensus 262 a~~aL~~L~~~~-------~n~~~i~~~G~v~~Lv~lL~~---~~~~~~~~a~~-------~L~~L~~~~---------- 314 (418)
++.+|.||.... .....|++.|+++ +++.|.. .|+++.+..-. -+..++..+
T Consensus 249 ~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~ 327 (429)
T cd00256 249 VLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGR 327 (429)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 999999998743 2345667777655 4555543 24444433221 222333322
Q ss_pred --------------hHHHHHHhcc-CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817 315 --------------AGCAEFAEHA-LTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 315 --------------~~~~~i~~~~-g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
++..++-+.. ..+..|+++|.. .++.+..-|+.=|..+++..|+-+..+.+.|+=..++.++.+
T Consensus 328 L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h 407 (429)
T cd00256 328 LHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNH 407 (429)
T ss_pred ccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcC
Confidence 3333343321 255788888854 567777788888888888778888888889999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 014817 379 DCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 379 ~~~~~~~~~A~~~L~~l~~ 397 (418)
. ++++|..|..+++.|-.
T Consensus 408 ~-d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 408 E-DPNVRYEALLAVQKLMV 425 (429)
T ss_pred C-CHHHHHHHHHHHHHHHH
Confidence 7 99999999999987743
No 37
>PRK09687 putative lyase; Provisional
Probab=99.03 E-value=1.9e-08 Score=93.61 Aligned_cols=195 Identities=15% Similarity=0.029 Sum_probs=114.2
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH-hcCCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL-LFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
+++.+..++.+. ++.++..|+++|+.|.... .. ....++.|..+ +++.++.+|..|+.+|.++
T Consensus 55 ~~~~l~~ll~~~-------d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~--- 118 (280)
T PRK09687 55 VFRLAIELCSSK-------NPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHR--- 118 (280)
T ss_pred HHHHHHHHHhCC-------CHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc---
Confidence 445555555444 4566666666666654322 10 12345556555 4555666666677776666
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALA 305 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~ 305 (418)
..... ... ..+++.|...+.+. ++.++..++++|..+. ...+++.|+.+|.+.+..+...|+.
T Consensus 119 ~~~~~----~~~-~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 119 CKKNP----LYS-PKIVEQSQITAFDK--STNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred ccccc----ccc-hHHHHHHHHHhhCC--CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 22111 001 23556666666665 5666666666664432 1226777777777777777777777
Q ss_pred HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHH
Q 014817 306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAK 385 (418)
Q Consensus 306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 385 (418)
+|..+... ...+++.|+..+...+..++..|+++|..+- ++ .+++.|+..|+++ + .+
T Consensus 182 aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~-~--~~ 238 (280)
T PRK09687 182 ALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKG-T--VG 238 (280)
T ss_pred HHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCC-c--hH
Confidence 77766211 1244567777777777788888877776632 22 3678888888665 4 45
Q ss_pred HHHHHHHHHHHh
Q 014817 386 RKAQLLLKLLRD 397 (418)
Q Consensus 386 ~~A~~~L~~l~~ 397 (418)
..|...|..+..
T Consensus 239 ~~a~~ALg~ig~ 250 (280)
T PRK09687 239 DLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHHhcCC
Confidence 566666665543
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.99 E-value=2e-10 Score=73.65 Aligned_cols=36 Identities=22% Similarity=0.611 Sum_probs=23.1
Q ss_pred CcCccccccC----CeecCCCCcccHHHHHHHHHcC---CCCCC
Q 014817 20 CPISLELMCD----PVTVCTGQTYDRPSIESWVATG---NTTCP 56 (418)
Q Consensus 20 Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~---~~~cp 56 (418)
||||++ |.+ |++++|||+||+.||+++++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999853 34576
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.94 E-value=2.6e-10 Score=78.19 Aligned_cols=43 Identities=33% Similarity=0.794 Sum_probs=31.6
Q ss_pred cccCcCccccccCCeec-CCCCcccHHHHHHHHH-cCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVA-TGNTTCPVTR 59 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~-~~~~~cp~~~ 59 (418)
.+.||||+.+|+|||.. .|||+|+|.+|.+|+. .+...||+.+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999997 7999999999999994 3456699965
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-07 Score=95.55 Aligned_cols=260 Identities=16% Similarity=0.135 Sum_probs=200.9
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
...+.+|+..|.... +...+++|+.+|.++.. .+++.-.-|--.-.+|.|+.+|+... +.++.-.|+.+|.+
T Consensus 166 sSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~------n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH------NFDIMLLACRALTY 238 (1051)
T ss_pred hHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc------cHHHHHHHHHHHHH
Confidence 346788999888764 33346888888887654 44444333333458999999998875 79999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
|+---+..-..+++.++||.|+.-|.. .-.++.+.++.+|..+ +.. ..+..+ . .|+|...+..|+-- +..+
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i---SR~-H~~AiL-~-AG~l~a~LsylDFF--Si~a 310 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI---SRR-HPKAIL-Q-AGALSAVLSYLDFF--SIHA 310 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH---Hhh-ccHHHH-h-cccHHHHHHHHHHH--HHHH
Confidence 875544567788899999999987754 5688889999999999 433 234444 4 68899999888877 6789
Q ss_pred hHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHH
Q 014817 259 LKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR----IPAGCAEFAEHALTVPLLVK 332 (418)
Q Consensus 259 ~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~ 332 (418)
++.|+.+..|.|.. .+.-.-++ .++|.|-.+|...+....+.++-++..++. .++--+++..+ |.|....+
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~q 387 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQ 387 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHH
Confidence 99999999999965 33333333 369999999998888889999988888883 56677788886 99999999
Q ss_pred HHhcC----ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817 333 TILKI----SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 333 ~l~~~----~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
++.-. +..+..-.++.|..+|.+++-......+.++...|.++|+.
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 88652 33445677788888888889888889999999999999964
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.90 E-value=1e-09 Score=70.71 Aligned_cols=39 Identities=36% Similarity=0.887 Sum_probs=36.0
Q ss_pred CcCccccccCCe-ecCCCCcccHHHHHHHHH-cCCCCCCCC
Q 014817 20 CPISLELMCDPV-TVCTGQTYDRPSIESWVA-TGNTTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~-~~~~~cp~~ 58 (418)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 557779986
No 42
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.89 E-value=8.5e-10 Score=99.71 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=61.9
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
-++|-||.++|+-||+++||||||--||.+++.. .+.||.|..++....+..|.-+.++|+.|...+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999986 788999999999999999999999999986643
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=3.8e-08 Score=93.60 Aligned_cols=198 Identities=15% Similarity=0.045 Sum_probs=146.6
Q ss_pred hHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-----hhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817 197 ITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-----DEIFEGVIDILKNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 197 i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L 269 (418)
...++.+|+ +.+.++..+....+..+. ..++.....+... .....++++++.++ |..+...|+..|..|
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll--~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~--D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLL--SDDPSRVELFLELAKQDDSDPYSPFLKLLDRN--DSFIQLKAAFILTSL 132 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHH--H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHH--hcCHHHHHHHHHhcccccchhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 444555554 357999999999999995 4444444333321 12678899988888 899999999999999
Q ss_pred ccccccHHHHHHcCchHHHHHHhcC----CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHH------hc-CC
Q 014817 270 CLVKQTRYKAVAAGAAETLVDRLAD----FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTI------LK-IS 338 (418)
Q Consensus 270 ~~~~~n~~~i~~~G~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l------~~-~~ 338 (418)
......+......+.++.+++.|.+ .+.+.+..++.+|.+|...++.|..+.+ .|+++.++.++ .+ .+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------H
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCc
Confidence 8877655555447788899988874 3456778999999999999999999999 49999999999 22 56
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
...+-+++-++|.|+. +++....+.+.++++.|+++++...-+++.|-+..+|+||....+
T Consensus 212 ~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 6677899999999999 888899999999999999999877689999999999999998754
No 44
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.88 E-value=3.4e-07 Score=90.62 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHH
Q 014817 257 RGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTI 334 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l 334 (418)
..+.+|+-.+.+++.. ..-+..+-+..++.+||+++..++..++..++++|.||. .....|.++.+. |+|..+..++
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s~~ 470 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHHHh
Confidence 3444444555555433 222223445678999999999888999999999999999 457889999995 9999999999
Q ss_pred hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 335 LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 335 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+.+...+..+.|+|+++..++.+..+......+...++.-+-++.+..+++.+..+||||.-..
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999777766665555555444444445559999999999999998764
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.87 E-value=5.9e-10 Score=76.23 Aligned_cols=59 Identities=22% Similarity=0.468 Sum_probs=33.2
Q ss_pred CcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 014817 16 YHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLI 77 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i 77 (418)
.-++|++|.++|++||.+ .|.|.||..||.+.+. ..||+|+.+-...++.-|+.|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 347899999999999976 8999999999987554 2399999998888999999888875
No 46
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.83 E-value=2.5e-09 Score=95.34 Aligned_cols=50 Identities=24% Similarity=0.511 Sum_probs=42.0
Q ss_pred CCCCcccCcCccccccCC--------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDP--------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dP--------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+...+..||||++.+.++ ++.+|||+||+.||.+|+.. ..+||.|+.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 345578899999988774 56689999999999999885 778999998764
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.4e-07 Score=86.18 Aligned_cols=184 Identities=17% Similarity=0.062 Sum_probs=150.3
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
+.+-++.|+.-|..+..+- +|..-+...|++.+++..|++++.++|+.|+++|...+ ..++...+.+.+ .|+++.|
T Consensus 96 ~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~--qNNP~~Qe~v~E-~~~L~~L 171 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAV--QNNPKSQEQVIE-LGALSKL 171 (342)
T ss_pred CHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHH--hcCHHHHHHHHH-cccHHHH
Confidence 5677888888888877655 78888999999999999999999999999999999996 567777777765 7899999
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhcCHhHHHHHHh
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCRIPAGCAEFAE 322 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~ 322 (418)
+.+|.... +..++..|+-|++.|-.+. .....+...++...|..+|.++ +...+..++.++..|......-..+..
T Consensus 172 l~~ls~~~-~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDD-PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHccCC-CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999764 5677899999999999875 4788888999999999999984 566788999999998854433333444
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 323 HALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
..|....++.+....+..+.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 34777777777777888899999998877665
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.3e-07 Score=83.90 Aligned_cols=200 Identities=16% Similarity=0.073 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCc
Q 014817 206 HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGA 284 (418)
Q Consensus 206 ~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~ 284 (418)
+.+.+-++.|..-|..+ ..+-+|...+.. .|++.+|+..+++. +..+++.|+++|...+.++. ....+.+.|+
T Consensus 94 s~~le~ke~ald~Le~l---ve~iDnAndl~~-~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEEL---VEDIDNANDLIS-LGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHH---HHhhhhHHhHhh-ccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 34688899999999999 566677777765 68899999999998 89999999999999998765 7778899999
Q ss_pred hHHHHHHhcCCC-cccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHH
Q 014817 285 AETLVDRLADFD-KCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQ 360 (418)
Q Consensus 285 v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~ 360 (418)
++.|+..|.+.+ ..++.+|+.++..|.++ ..+...+.. .++...|...|.+ .+...+..|+-.+..+........
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 999999998654 45668999999999965 467777777 4789999999988 678888999999999998777667
Q ss_pred HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH-HHHhhCCCCCCCCCCCCCccc
Q 014817 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK-LLRDSWPQDSIGNSDDFACSE 414 (418)
Q Consensus 361 ~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~-~l~~~~~~~~~~~~~~~~~~~ 414 (418)
..+...|....+..+.... +...++.|...+- .+..+.. +..++-.+..+.+
T Consensus 247 d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~~~-~~~~~~~~~~l~e 299 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLSELST-RKELFVSLLNLEE 299 (342)
T ss_pred hHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHHHhh-cchhhhhhhhHHH
Confidence 7666777777777666555 7777776655444 4444433 2235554544433
No 49
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=4.9e-09 Score=70.60 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=40.8
Q ss_pred CcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+++.|+||.+..+++++.+|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 4788999998764
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=2.3e-06 Score=92.71 Aligned_cols=120 Identities=14% Similarity=0.019 Sum_probs=83.4
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA 321 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 321 (418)
++.|..++++. ++.++..|+.+|.++.... .+++.++..|.+.+..++..|+.+|..+..
T Consensus 777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 777 GDAVRALTGDP--DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---------
Confidence 56667777666 6777777777776663221 122446667776666777777777765432
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
...++.|+.+|.+.+..++..|+.+|..+. +++. ..+.|...++.. +..+|+.|...|+.
T Consensus 837 --~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 837 --DVAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH 896 (897)
T ss_pred --cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 246688999999999999999999998862 2333 345666777666 99999999998863
No 51
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.2e-09 Score=85.15 Aligned_cols=52 Identities=21% Similarity=0.509 Sum_probs=44.0
Q ss_pred cccCcCccccccCCe--ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817 17 HFRCPISLELMCDPV--TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv--~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 69 (418)
-|.||||++-++.-+ -..|||.||+.||++.++. ...||.|++.+....+.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 389999999998755 4689999999999999986 678999999887666543
No 52
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=1.6e-06 Score=93.92 Aligned_cols=225 Identities=16% Similarity=0.059 Sum_probs=135.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
..++.|++.|...++ .-|..|+..|.... ..++++.|+..|.++ +..|+..|+.+|..+.
T Consensus 621 ~~~~~L~~~L~D~d~--~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~-------d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 621 PSVAELAPYLADPDP--GVRRTAVAVLTETT-----------PPGFGPALVAALGDG-------AAAVRRAAAEGLRELV 680 (897)
T ss_pred hhHHHHHHHhcCCCH--HHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHH
Confidence 345566677765433 33566777776653 134678888888666 5788998888887663
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
... ...+.|...|.+.++.+|..++.+|..+ ... -...|+..|++. ++.++..
T Consensus 681 ~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~---~~~------------~~~~l~~~L~D~--d~~VR~~ 733 (897)
T PRK13800 681 EVL----------PPAPALRDHLGSPDPVVRAAALDVLRAL---RAG------------DAALFAAALGDP--DHRVRIE 733 (897)
T ss_pred hcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhh---ccC------------CHHHHHHHhcCC--CHHHHHH
Confidence 211 1124566677777777777777777666 211 112344445544 5555555
Q ss_pred HHHHHHHHcc--------ccc---cHHHHH---------HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817 262 GIKALFALCL--------VKQ---TRYKAV---------AAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA 321 (418)
Q Consensus 262 a~~aL~~L~~--------~~~---n~~~i~---------~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 321 (418)
|+.+|..+-. .++ -|...+ +.+.++.|..++.+.+..++..|+.+|..+...+
T Consensus 734 Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~------- 806 (897)
T PRK13800 734 AVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP------- 806 (897)
T ss_pred HHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------
Confidence 5555554310 000 011000 1123566777777767777777777776653211
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
..+..++..+.+.+..++..|+.+|..+.. ...++.|+.+|.+. +..+|..|+..|..+
T Consensus 807 ---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 ---DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW 865 (897)
T ss_pred ---hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence 122446666777777788888888766543 22458888888777 999999999999876
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.4e-07 Score=90.76 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=160.5
Q ss_pred ChhHHHHHHHHHh-cCCCChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817 166 SPELAHESLALLV-MFPLTETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243 (418)
Q Consensus 166 ~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~ 243 (418)
++..|..|+.-|+ +|..++++.-..+--...+|.|+.+|++. +.++...|+++|.+|. -..+.....+ ...++||
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~--evlP~S~a~v-V~~~aIP 257 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC--EVLPRSSAIV-VDEHAIP 257 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hhccchhhee-ecccchH
Confidence 4556777777666 55666655555555567899999999876 6999999999999995 4455544444 4478999
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHHHHH
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR--IPAGCAEFA 321 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~ 321 (418)
.|++-|..=. ..++.+.++.||-.|+..+. ..++.+|++-..+.+|.=-...++..|+.+..|+|. .++.-..++
T Consensus 258 vl~~kL~~Ie-yiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ 334 (1051)
T KOG0168|consen 258 VLLEKLLTIE-YIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM 334 (1051)
T ss_pred HHHHhhhhhh-hhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH
Confidence 9998776532 67899999999999987653 577899999999999975456788999999999994 345555555
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHHHHHHhh
Q 014817 322 EHALTVPLLVKTILKISDRATEYAAGALAALCS---ASERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
+ ++|.|-.+|...+...-+.++.++..++. +.++..+.+...|.+.....||..
T Consensus 335 e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 335 E---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred H---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 4 49999999999999999999999988886 678888888899998888888754
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.70 E-value=8.2e-09 Score=91.49 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=58.4
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
++|-||.+.++-|+.++||||||.-||.+++.. .++||.|+.+....-+.-+..++..++.+....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 599999999999999999999999999999986 789999999988777777777888888876643
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-08 Score=90.72 Aligned_cols=55 Identities=22% Similarity=0.497 Sum_probs=47.9
Q ss_pred CCCCC-cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 12 VQIPY-HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 12 ~~~~~-~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
..+|+ .+.|-+|++-++||--++|||.||=+||.+|..+ ...||.|++.+++..+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 34444 6999999999999999999999999999999986 4559999999887665
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.67 E-value=8.4e-09 Score=67.44 Aligned_cols=40 Identities=38% Similarity=0.826 Sum_probs=33.8
Q ss_pred cCcCcccccc---CCeecCCCCcccHHHHHHHHHcCCCCCCCCC
Q 014817 19 RCPISLELMC---DPVTVCTGQTYDRPSIESWVATGNTTCPVTR 59 (418)
Q Consensus 19 ~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~ 59 (418)
.||||.+.|. .++.++|||.|++.||.+|++. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5667799999999999999987 57999985
No 57
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-08 Score=88.06 Aligned_cols=57 Identities=30% Similarity=0.595 Sum_probs=50.5
Q ss_pred CcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCCCCCCCCCCCcccHH
Q 014817 16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVTRSPLTDFTLIPNHT 72 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~~~~l~~n~~ 72 (418)
..|-|-||++.-+|||++.|||-||=-||-+|+.- +...||+|+..++.+.++|-+.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 47999999999999999999999999999999873 3566899999999888888653
No 58
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.64 E-value=3.4e-08 Score=64.74 Aligned_cols=43 Identities=40% Similarity=0.966 Sum_probs=38.6
Q ss_pred cCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
.|+||.+.+.+|+.+. |||.|++.|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999998767889999864
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.63 E-value=2.4e-05 Score=76.32 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=176.8
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc-----CCchHHHHHHhcCCCHHHHHHHHHHHH
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD-----ADKITSLSSLLFHSSIEVRVNSAALIE 220 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-----~g~i~~Lv~~L~~~~~~~~~~a~~~L~ 220 (418)
..+..++.+|+... +.++....+..+.-+...++..-..+.+ .+...+++.+|.+++.-+...++.+|.
T Consensus 53 ~y~~~~l~ll~~~~------~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQID------KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhccC------cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 46777888887653 5778888888877666555333333333 467888889999999999999999999
Q ss_pred HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--Ccc
Q 014817 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKC 298 (418)
Q Consensus 221 ~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~ 298 (418)
.++ +......... ...-.+.-|...+.+.. +...+..++.+|..|...++.|..+.+.++++.|+++|... ...
T Consensus 127 ~l~--~~~~~~~~~~-~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 127 KLA--CFGLAKMEGS-DLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHH--hcCccccchh-HHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 996 2222110100 00113334555566542 56788889999999999999999999999999999999753 346
Q ss_pred cHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcC------CHHHHHHHHhcChHHH
Q 014817 299 DAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSA------SERCQRDAVSAGVLTQ 371 (418)
Q Consensus 299 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~------~~~~~~~~~~~g~i~~ 371 (418)
++-.++-++..|+-+++....+.. .+.|+.++++++. .-.++.+-++.+|.|+... .......|+..|+++.
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~ 281 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKT 281 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHH
Confidence 778899999999988887777766 4999999999977 6777889999999999872 2245567888888765
Q ss_pred HHHHHh--hCCCHHHHHHHHHHHHHHHhhC
Q 014817 372 LLLLVQ--SDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 372 L~~ll~--~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
+ ..|+ ...++.+.+--..+-..|.+.-
T Consensus 282 l-~~L~~rk~~DedL~edl~~L~e~L~~~~ 310 (429)
T cd00256 282 L-QSLEQRKYDDEDLTDDLKFLTEELKNSV 310 (429)
T ss_pred H-HHHhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5 5554 3457888877777777776653
No 60
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.6e-08 Score=86.15 Aligned_cols=76 Identities=38% Similarity=0.563 Sum_probs=70.9
Q ss_pred CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
.+.++|+.++|.|+.++|++||+.|+|-||+|..|++.+..-..+.|+|+.++....++||.+++..|..|.+.|.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999998767889999999999999999999999999998874
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.61 E-value=3e-06 Score=80.82 Aligned_cols=269 Identities=14% Similarity=0.073 Sum_probs=185.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+....|++++.+++.+.+-++++.+.|..+.. .+|++.++.-| ...++.+-+... .++.+...+.+|.++.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e------~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKERE------PVELARSVAGILEHMF 250 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcC------cHHHHHHHHHHHHHHh
Confidence 34567899999887665568889999998865 57888888766 555555543332 4788899999999998
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
.+.++....++..|++..++-..+..++.+..+++.+|.|++- ......+..|.+ ..+-+-|.-+..+. +.-.+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L-~~~~a~qrrmve-Kr~~EWLF~LA~sk--Del~R~~ 326 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCAL-HGGQAVQRRMVE-KRAAEWLFPLAFSK--DELLRLH 326 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhh-hchhHHHHHHHH-hhhhhhhhhhhcch--HHHHHHH
Confidence 8887888888899999999999999999999999999999831 234456666655 44666677777776 7788999
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
|+-+..-|+.+.+.-..+-+.|.+..+=.++.+-|+.-- +. +.....-.....-+..|+.+|.+ .+.
T Consensus 327 AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------AR-D~hd~aQG~~~d~LqRLvPlLdS--~R~ 393 (832)
T KOG3678|consen 327 ACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------AR-DAHDYAQGRGPDDLQRLVPLLDS--NRL 393 (832)
T ss_pred HHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hh-hhhhhhccCChHHHHHhhhhhhc--chh
Confidence 999999999999877777777766554445554444321 11 11111111112346677877763 333
Q ss_pred HHHHHHHHHHHhc----CCHHHH-HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 342 TEYAAGALAALCS----ASERCQ-RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 342 ~~~A~~~L~~l~~----~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..+++.+ ..+|. .+.... +.+-+-|+|+.|-++.++. +.....-|..+|+.+-+.
T Consensus 394 EAq~i~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 394 EAQCIGA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhhhHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence 3444444 23343 222223 3344569999998888766 777777788888888764
No 62
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.8e-08 Score=93.59 Aligned_cols=70 Identities=27% Similarity=0.479 Sum_probs=59.2
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
....+++.||||.+.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.+...+
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 35567889999999999999999999999999999998 5677999986 322 6678888988888887764
No 63
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.56 E-value=6.5e-08 Score=61.14 Aligned_cols=39 Identities=46% Similarity=0.991 Sum_probs=35.9
Q ss_pred CcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCC
Q 014817 20 CPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~ 58 (418)
||||.+..++|++++|||.|+..|+.+|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998656779976
No 64
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.55 E-value=9.3e-06 Score=83.19 Aligned_cols=244 Identities=14% Similarity=0.108 Sum_probs=133.7
Q ss_pred cccHHHHHHHHHHHHhccCCCcccCCCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcCh
Q 014817 68 IPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNV 147 (418)
Q Consensus 68 ~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~ 147 (418)
..+..++++.--+...-.... |. ...-.+..+.+-|.+++ ...+.-|++.|..+. +++..+. .
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~------~~--~~~l~~n~l~kdl~~~n--~~~~~lAL~~l~~i~--~~~~~~~-----l 115 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHED------PE--LLILIINSLQKDLNSPN--PYIRGLALRTLSNIR--TPEMAEP-----L 115 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTS------HH--HHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHH---SHHHHHH-----H
T ss_pred CCCHHHHHHHHHHHHHHhhcc------hh--HHHHHHHHHHHhhcCCC--HHHHHHHHhhhhhhc--ccchhhH-----H
Confidence 556677777666555421100 00 00012345556665553 345677888888876 2332222 4
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
++.+.+++.++ ++.|+..|+.++..+.... ...+... .++.+.++|.+.++.++..|+.++..+ ..
T Consensus 116 ~~~v~~ll~~~-------~~~VRk~A~~~l~~i~~~~---p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i---~~ 181 (526)
T PF01602_consen 116 IPDVIKLLSDP-------SPYVRKKAALALLKIYRKD---PDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI---KC 181 (526)
T ss_dssp HHHHHHHHHSS-------SHHHHHHHHHHHHHHHHHC---HCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHhcCC-------chHHHHHHHHHHHHHhccC---HHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH---cc
Confidence 67788888776 5789999988888765432 2222222 688899999888899999888888888 33
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
.++....+. ...+..|.+++... ++-.+..+++.|..++........- ...++.+..++.+.+..+.-.++.++
T Consensus 182 ~~~~~~~~~--~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 182 NDDSYKSLI--PKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHTTHH--HHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhH--HHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 333211221 23555555555555 5666666666666665443221100 33444555555544445555555555
Q ss_pred HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
..+...+. +.. .+++.|++++.+.++.++-.++..|..++.
T Consensus 256 ~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 256 IKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred HHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 55554443 111 234445555554555555555555555554
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.9e-06 Score=85.55 Aligned_cols=217 Identities=14% Similarity=0.052 Sum_probs=174.0
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLA 224 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~ 224 (418)
.|+.|++-+.+.. -.+-++.|+..|..++. ..|..++..| +++|+..|+.+ ++++...+..++.++.+
T Consensus 23 TI~kLcDRvessT------L~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 23 TIEKLCDRVESST------LLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HHHHHHHHHhhcc------chhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 4677777776553 35668889988887765 6788887665 89999999765 79999999999999952
Q ss_pred cccch------hh----------hhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--ccHHHHHH-cCch
Q 014817 225 GMRSQ------EL----------RAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK--QTRYKAVA-AGAA 285 (418)
Q Consensus 225 ~s~~~------~~----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~--~n~~~i~~-~G~v 285 (418)
.++ +. .+.+....+.|..|+..++.. +--++..+...|.+|-.+. +-+..+.. --+|
T Consensus 93 --~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 93 --HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI 168 (970)
T ss_pred --cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence 221 11 222335567899999999988 8899999999999997654 45555544 5799
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-C---ChHHHHHHHHHHHHHhcCCHHHHH
Q 014817 286 ETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-I---SDRATEYAAGALAALCSASERCQR 361 (418)
Q Consensus 286 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~---~~~~~~~A~~~L~~l~~~~~~~~~ 361 (418)
..|+.+|.+....++..++-.|..|+.+....++++...++...|..++.. + .-.+-+-++..|.||-+.+..++.
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~ 248 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN 248 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence 999999998888899999999999998888888887777999999999987 2 335678999999999998888888
Q ss_pred HHHhcChHHHHHHHHh
Q 014817 362 DAVSAGVLTQLLLLVQ 377 (418)
Q Consensus 362 ~~~~~g~i~~L~~ll~ 377 (418)
-+.+.+.++.|..+|.
T Consensus 249 ~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 249 FFREGSYIPRLLKLLS 264 (970)
T ss_pred HHhccccHHHHHhhcC
Confidence 8889999999998885
No 66
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.53 E-value=6.3e-06 Score=81.82 Aligned_cols=225 Identities=15% Similarity=0.086 Sum_probs=151.9
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
+..+...|+-.+.+++.+....+..+....++.+||++|..++..++..+.++|.||. ....+.|..+.. .|+|+.|
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV--mefs~~kskfl~-~ngId~l 466 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV--MEFSNLKSKFLR-NNGIDIL 466 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH--hhcccHHHHHHH-cCcHHHH
Confidence 4566777777777777777667777778899999999999999999999999999998 778888888866 7899999
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHccccccHHHH--HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHh
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLVKQTRYKA--VAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAE 322 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i--~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~ 322 (418)
..++.+. ++.++..+.|+|+++..+.++..+. .+-=....++.+..+++..++|.+..+|+||..+ .+....+++
T Consensus 467 ~s~~~~~--~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 467 ESMLTDP--DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999 8999999999999999887755444 2333344567777888999999999999999965 344444444
Q ss_pred ccC-ChHHHHHH--HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-------CCHHHHHHHHHHH
Q 014817 323 HAL-TVPLLVKT--ILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-------CTDRAKRKAQLLL 392 (418)
Q Consensus 323 ~~g-~i~~Lv~~--l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~~A~~~L 392 (418)
.-+ .+..+... +..+++-.-+.-...+..+...+.+.+. ..+|.++.++..-... ......-++.|.+
T Consensus 545 ~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~--am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~i 622 (678)
T KOG1293|consen 545 KFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKK--AMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEI 622 (678)
T ss_pred hhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHH--HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 212 11111111 2224554444444443333333333333 3355555554433221 1233445555665
Q ss_pred HHHHh
Q 014817 393 KLLRD 397 (418)
Q Consensus 393 ~~l~~ 397 (418)
-++..
T Consensus 623 inl~~ 627 (678)
T KOG1293|consen 623 INLTT 627 (678)
T ss_pred HhccC
Confidence 55544
No 67
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=1.6e-07 Score=86.16 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=45.6
Q ss_pred CcccCcCcccc-ccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC----CcccHHHHHH
Q 014817 16 YHFRCPISLEL-MCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT----LIPNHTLRRL 76 (418)
Q Consensus 16 ~~~~Cpi~~~~-~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~----l~~n~~L~~~ 76 (418)
++..||+|+.- +..|- +.+|||+||++||..+|..+...||.|+.++.... ..++..+.+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekE 71 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKE 71 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHH
Confidence 35679999983 44553 33799999999999988877889999999987655 4444444443
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=4.4e-06 Score=66.77 Aligned_cols=153 Identities=15% Similarity=0.114 Sum_probs=126.7
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA 318 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 318 (418)
.|-+..||.=.++.. +.+.++....-|.|.+-..-|-..+.+.++++..+.-|...+..+++.+.+.|.|||-+..+.+
T Consensus 15 l~Ylq~LV~efq~tt-~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTT-NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 456778888777765 8899999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 319 EFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 319 ~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
.|++ ++++|.++..+++.....--.|+.++..|+.+....+.++..-.++.-+.+.-.+- +...+--|...|..
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK 167 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9999 59999999999988888889999999999998888888877766666555544333 44444444444443
No 69
>PHA02926 zinc finger-like protein; Provisional
Probab=98.42 E-value=1.9e-07 Score=80.44 Aligned_cols=51 Identities=18% Similarity=0.420 Sum_probs=40.4
Q ss_pred CCCCcccCcCccccccC---------CeecCCCCcccHHHHHHHHHcC-----CCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCD---------PVTVCTGQTYDRPSIESWVATG-----NTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~d---------Pv~~~~g~~~~r~~i~~~~~~~-----~~~cp~~~~~l~ 63 (418)
....+..|+||++...+ +++.+|||+||..||.+|.+.. ...||.|+..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34557789999998744 4566899999999999998742 345999998875
No 70
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.42 E-value=3.3e-05 Score=79.08 Aligned_cols=254 Identities=17% Similarity=0.162 Sum_probs=176.2
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
+.+.+.+.++++ .-|..|+-++.++.+.++.. +... .++.+.++|.+. ++.|+..|+.++..+..++
T Consensus 117 ~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~-------~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 117 PDVIKLLSDPSP--YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDK-------DPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHS-------SHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHhcCCch--HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCC-------cchhHHHHHHHHHHHccCc
Confidence 345555555433 45678999999998765542 2223 689999999766 6899999999999881122
Q ss_pred hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
.... -.-...+..|.+++...++-.+.....+|..+ ...+.....- ...++.+..++++. ++.+.-.+..
T Consensus 184 ~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~---~~~~~~~~~~---~~~i~~l~~~l~s~--~~~V~~e~~~ 253 (526)
T PF01602_consen 184 DSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRY---APMEPEDADK---NRIIEPLLNLLQSS--SPSVVYEAIR 253 (526)
T ss_dssp HHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTS---TSSSHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhc---ccCChhhhhH---HHHHHHHHHHhhcc--ccHHHHHHHH
Confidence 1111 11233455566666778899999999999888 4332211110 35788899999877 7899999999
Q ss_pred HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh-cCChHHHH
Q 014817 265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL-KISDRATE 343 (418)
Q Consensus 265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~ 343 (418)
++.++..... .-..+++.|+.+|.+.+.+++-.++..|..++... ...+. + ....+..+. +.+..++.
T Consensus 254 ~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~---~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 254 LIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-N---QSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-T---HHHHHHHHHCSSSHHHHH
T ss_pred HHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-h---hhhhhheecCCCChhHHH
Confidence 9998887666 44558899999999888889999999999998644 22222 1 233444566 68889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.++.+|..++. ++.... +++.|...+...++...++.+...+..++...
T Consensus 323 ~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 323 KALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 99999999996 444444 67888888854437778999888888888765
No 71
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.2e-08 Score=88.74 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=57.5
Q ss_pred CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCC-CCCCCcccHHHHHHHHHH
Q 014817 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPL-TDFTLIPNHTLRRLIQDW 80 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l-~~~~l~~n~~L~~~i~~~ 80 (418)
+-.+|.||||+++++-.++. .|+|.||+.||-+-+..++..||.|++.+ +...+.++.....+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 34568999999999999999 59999999999999999899999999998 567777777777776664
No 72
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.34 E-value=4e-07 Score=59.33 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=35.2
Q ss_pred cCcCccccc---cCCeecCCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817 19 RCPISLELM---CDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60 (418)
Q Consensus 19 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~ 60 (418)
.|++|.+.+ +.|++++|||+||..|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999999 467888999999999999998 44678999974
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.33 E-value=8.6e-06 Score=77.81 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=140.2
Q ss_pred HhhcccCCchHHHHHHhcCCCHHH--HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHH
Q 014817 188 MEIASDADKITSLSSLLFHSSIEV--RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKA 265 (418)
Q Consensus 188 ~~~i~~~g~i~~Lv~~L~~~~~~~--~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~a 265 (418)
...|...|++..|++++...+.+. |..++.+|..+. ..+|++.++. .| +..++.+.+... .++.....+..
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~----~aeN~d~va~-~~-~~~Il~lAK~~e-~~e~aR~~~~i 245 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL----VAENRDRVAR-IG-LGVILNLAKERE-PVELARSVAGI 245 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH----hhhhhhHHhh-cc-chhhhhhhhhcC-cHHHHHHHHHH
Confidence 445667799999999999987555 889999999983 4566777765 33 555555555442 57888999999
Q ss_pred HHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh--cCHhHHHHHHhccCChHHHHHHHhcCChHHH
Q 014817 266 LFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC--RIPAGCAEFAEHALTVPLLVKTILKISDRAT 342 (418)
Q Consensus 266 L~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~--~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~ 342 (418)
|.++..+. +.+.+++++|+++.++--....++.+...++-+|.|++ .+.+++..+++. .+-+-|..+-.+.++..+
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHH
Confidence 99999875 58899999999999998888888999999999999988 566888899985 666777776677788889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcChHHHH
Q 014817 343 EYAAGALAALCSASERCQRDAVSAGVLTQL 372 (418)
Q Consensus 343 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L 372 (418)
-+|+-++..|+. +.+.-.++.+.|-+...
T Consensus 325 ~~AClAV~vlat-~KE~E~~VrkS~TlaLV 353 (832)
T KOG3678|consen 325 LHACLAVAVLAT-NKEVEREVRKSGTLALV 353 (832)
T ss_pred HHHHHHHhhhhh-hhhhhHHHhhccchhhh
Confidence 999999999888 77777778777754433
No 74
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.29 E-value=0.00011 Score=69.80 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
.+-...|+.+|..+..-+ +.|-.++.++++..++..|.+ .+-.++...+..++-| +.++...+.+ ...+.|+.
T Consensus 171 ~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL---tFn~~~ae~~-~~~~li~~ 245 (442)
T KOG2759|consen 171 NDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL---TFNPHAAEKL-KRFDLIQD 245 (442)
T ss_pred CchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh---hcCHHHHHHH-hhccHHHH
Confidence 444556777888777777 789999999999999999943 4688899999999999 8899888888 45789999
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcCC---CcccHHH-------HHHHH
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLADF---DKCDAER-------ALATV 307 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~-------a~~~L 307 (418)
|.++++... .+.+.+-.+.++.|+....+ ....|+..++ +.-++.|... |..+.+. .-.-.
T Consensus 246 L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~sv 323 (442)
T KOG2759|consen 246 LSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSV 323 (442)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999875 67889999999999987652 3344555554 4445555422 3333322 12222
Q ss_pred HHHhcCHhHHHHHHh------------------------c-cCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHH
Q 014817 308 ELLCRIPAGCAEFAE------------------------H-ALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQR 361 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~------------------------~-~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~ 361 (418)
..|++-++...++.. . -..+..|+++|.. .++..-..|+.=+....+..|+-+.
T Consensus 324 q~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~ 403 (442)
T KOG2759|consen 324 QDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA 403 (442)
T ss_pred HhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH
Confidence 334443344333322 1 1256788888877 4577888888888888888999999
Q ss_pred HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 362 DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 362 ~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
.+.+.|+=+.++++|.+. ++++|..|..+++.|=.
T Consensus 404 vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 404 VVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence 999999999999999888 99999999988887644
No 75
>PF05536 Neurochondrin: Neurochondrin
Probab=98.27 E-value=0.00014 Score=74.09 Aligned_cols=245 Identities=15% Similarity=0.057 Sum_probs=161.5
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH---HHhhcccCCchHHHHHHhcCC-------CHHHHHHHHH
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE---CMEIASDADKITSLSSLLFHS-------SIEVRVNSAA 217 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~a~~ 217 (418)
+..-+.+|+..+ .+-+-.++..+.++..+++. .++.|.++=+.+.|-++|+++ ....+..|+.
T Consensus 7 l~~c~~lL~~~~-------D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 7 LEKCLSLLKSAD-------DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred HHHHHHHhccCC-------cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 444556676553 12244455555566655432 244566766678889999873 3677788999
Q ss_pred HHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc
Q 014817 218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK 297 (418)
Q Consensus 218 ~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~ 297 (418)
+|..+ +..++.+..= .-.+-||.|++.+.+.+ +.++...+..+|..++.+++.+..+++.|+|+.|.+.+.+ ..
T Consensus 80 vL~~f---~~~~~~a~~~-~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~ 153 (543)
T PF05536_consen 80 VLAAF---CRDPELASSP-QMVSRIPLLLEILSSSS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QS 153 (543)
T ss_pred HHHHH---cCChhhhcCH-HHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-Cc
Confidence 99999 6666654222 11357999999999883 3499999999999999999999999999999999999987 45
Q ss_pred ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHH----HHHHhcCChHHHHHHHHHHHHHhcCCHH-----HHHHHHhcCh
Q 014817 298 CDAERALATVELLCRIPAGCAEFAEHALTVPLL----VKTILKISDRATEYAAGALAALCSASER-----CQRDAVSAGV 368 (418)
Q Consensus 298 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L----v~~l~~~~~~~~~~A~~~L~~l~~~~~~-----~~~~~~~~g~ 368 (418)
...+.++.+|.+++..... +..-++...+..+ -..+.......+-..+..|.++-...+. ....-+-..+
T Consensus 154 ~~~E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL 232 (543)
T ss_pred chHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence 6689999999998854331 1111222223333 3333333444455566666665543321 1222333446
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 014817 369 LTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNS 407 (418)
Q Consensus 369 i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 407 (418)
...|..+|++.-++..|..|..+...|..... -.|.+.
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G-~~wl~~ 270 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLG-PEWLFA 270 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-hHhhcC
Confidence 66777778777689999999998888888743 334444
No 76
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.8e-07 Score=79.96 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=45.8
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHH-HHHcCCCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIES-WVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~-~~~~~~~~cp~~~~~l~~~~ 66 (418)
..+|.|+||.+.+.+|+.++|||.||-.||-. |..+...+||.|++...+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 35899999999999999999999999999999 88776788999998765433
No 77
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.23 E-value=8.6e-06 Score=65.11 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 194 ADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 194 ~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
-+.+..||.-.+. .+.+.++..+.-|.|+ +.++-|-..+.. ..+++.++..|... +....+.+...|.|+|..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANF---AYDP~Nys~Lrq-l~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d 88 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANF---AYDPINYSHLRQ-LDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLD 88 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---ccCcchHHHHHH-hhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccC
Confidence 3567777776654 4789999999999999 888888888865 67999999999998 899999999999999999
Q ss_pred cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHh
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~ 335 (418)
..|..-|.++|++|.++..+.++....+-.++.+|..|+..+ ..|..+.. |.+|..+.
T Consensus 89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~ 147 (173)
T KOG4646|consen 89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQ 147 (173)
T ss_pred hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHH
Confidence 999999999999999999999988888889999999998543 45555554 45555553
No 78
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00053 Score=72.67 Aligned_cols=261 Identities=14% Similarity=0.101 Sum_probs=160.2
Q ss_pred HHHHHHHHHhhhcChh-hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc--ccCCchH
Q 014817 122 LSALRRLRGLARDSDK-NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA--SDADKIT 198 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i--~~~g~i~ 198 (418)
..++..|-.++...+. -+..+. .++..-+.+..+..- +..++..|+..|..++.......+.. ...-.++
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l-----~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKEL-----ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccc-----cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHH
Confidence 4566666666654332 222222 234444455444321 56789999998887765532222211 1233455
Q ss_pred HHHHHhcCCCH----------------HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 199 SLSSLLFHSSI----------------EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 199 ~Lv~~L~~~~~----------------~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
.++.++..... .-...|..+|--++ .+=..+... .=.++.+-.+|.+. +..-+.+|
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA---~~L~g~~v~---p~~~~~l~~~l~S~--~w~~R~Aa 368 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA---LHLGGKQVL---PPLFEALEAMLQST--EWKERHAA 368 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH---hcCChhheh---HHHHHHHHHHhcCC--CHHHHHHH
Confidence 55555543211 12344555666662 221111111 22455666677777 89999999
Q ss_pred HHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC--HhHHHHHHhccCChHHHHHHHhc-CC
Q 014817 263 IKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI--PAGCAEFAEHALTVPLLVKTILK-IS 338 (418)
Q Consensus 263 ~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~-~~ 338 (418)
+.+|..++..... -...+ ..+++.++..|.++++.++-.|+.++..++.+ ++...+..+ -.++.|+..+.+ .+
T Consensus 369 L~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~ld~~~~ 445 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIALLDSTQN 445 (1075)
T ss_pred HHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHHhcccCc
Confidence 9999999865432 11112 34778888888999999999999999999964 444444443 667788888877 78
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++++.+|+.+|.|+....+...-.=.=-+.+.+++.+|..++++.+|+.+..+|...+.-.+
T Consensus 446 ~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 446 VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 89999999999998873332221111135566344444444499999999999999888665
No 79
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00011 Score=77.66 Aligned_cols=235 Identities=17% Similarity=0.137 Sum_probs=148.1
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
+.+-.++.+. +...|..|+-+|..++.+..+.-.... ..+++.++..|.++ ++.|+-.|+.+++.++.+-
T Consensus 351 ~~l~~~l~S~--~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-------hprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 351 EALEAMLQST--EWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-------HPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-------CHHHHHHHHHHHHhhhhhh
Confidence 4444555554 556678899999988866544332222 34667777777777 6899999999999998764
Q ss_pred hHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 185 TECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
...-..-...-.++.|+..+.+. ++.++.+|+.+|.|+ +..-. +..+.- -.+.+++++.+|..+. ++.+++.+
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf---~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~v 495 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF---SEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQA 495 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH---HHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHH
Confidence 32222223345577888888764 789999999999999 43332 233321 1466775555555443 78999999
Q ss_pred HHHHHHHccccccHHHHHHcCchHHHHHHhcCCC-cccHHHHHHHHHHHh--cCHhHHHHHHhccC-ChHHHHHH---Hh
Q 014817 263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFD-KCDAERALATVELLC--RIPAGCAEFAEHAL-TVPLLVKT---IL 335 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~--~~~~~~~~i~~~~g-~i~~Lv~~---l~ 335 (418)
+.+|...+..-+..-.---.-.+|.|...|...+ .+.++..-.++..++ ...-||+++...++ .+..+..+ ..
T Consensus 496 vtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~ 575 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ 575 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch
Confidence 9999999876554433333457888888887654 444443333333332 23456666665432 23333333 22
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 014817 336 KISDRATEYAAGALAALCS 354 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~ 354 (418)
..+...++.-+....++|+
T Consensus 576 ~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 2455667777777788887
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0004 Score=72.54 Aligned_cols=243 Identities=16% Similarity=0.160 Sum_probs=166.7
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhh----cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 121 RLSALRRLRGLARDSDKNRSLISS----HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
..-++.+|+++.+.+++....+.. .|-.+.+..+|.... ++.++..|+.++..+..+. ++-..+++.|.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~------~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK------HPKLQILALQVILLATANK-ECVTDLATCNV 1814 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC------CchHHHHHHHHHHHHhccc-HHHHHHHhhhH
Confidence 456899999999888855544432 477888888887664 5789999999988877666 88999999999
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH-------
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL------- 269 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L------- 269 (418)
+..|+.+|.+. +..|+.+..+|..| +.+.+....-.. .|++.-+..++-... +++.+..++..+..|
T Consensus 1815 L~~LL~lLHS~-PS~R~~vL~vLYAL---~S~~~i~keA~~-hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1815 LTTLLTLLHSQ-PSMRARVLDVLYAL---SSNGQIGKEALE-HGGLMYILSILCLTN-SDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred HHHHHHHHhcC-hHHHHHHHHHHHHH---hcCcHHHHHHHh-cCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhccccC
Confidence 99999998554 77889999999999 444444443334 566666665554432 444444555444444
Q ss_pred --------------------------------------------------------------------------------
Q 014817 270 -------------------------------------------------------------------------------- 269 (418)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (418)
T Consensus 1889 PrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred CceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence
Q ss_pred --------------------------------------------c--------------------cccc-cHHHHHHcCc
Q 014817 270 --------------------------------------------C--------------------LVKQ-TRYKAVAAGA 284 (418)
Q Consensus 270 --------------------------------------------~--------------------~~~~-n~~~i~~~G~ 284 (418)
+ .... -...+-..|.
T Consensus 1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence 0 0000 0011112355
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHH
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDA 363 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~ 363 (418)
+|.++..+...+..+-..|+.+|..|+.+.-..+++... .++..+++.|+..- ..-.-|+.+|-.+.. ...+....+
T Consensus 2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred hHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555555444444567899999999988888888875 67777888876532 223478888888777 445667788
Q ss_pred HhcChHHHHHHHHhh
Q 014817 364 VSAGVLTQLLLLVQS 378 (418)
Q Consensus 364 ~~~g~i~~L~~ll~~ 378 (418)
.+.|.++.|+.+|..
T Consensus 2127 LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2127 LKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hccCcHHHHHHHhcc
Confidence 999999999999964
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00016 Score=73.65 Aligned_cols=202 Identities=15% Similarity=0.107 Sum_probs=143.4
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh---hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK---NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
..+++.++.|++.+ |. +++.++--+.++++.++. .++.+.++=+.+.|-++|.+....+.......+..|+.+|.
T Consensus 5 ~~l~~c~~lL~~~~-D~-~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD-DT-ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccCC-cH-HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 46888999999876 43 589999999999987664 34456776668999999987543222224567888999999
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR 257 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 257 (418)
.++.++ +....----+-||.|++++.+++. ++...+..+|..+ +.+++.+..+.. .|+++.|++.+.+. +.
T Consensus 83 ~f~~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~I---as~~~G~~aLl~-~g~v~~L~ei~~~~---~~ 154 (543)
T PF05536_consen 83 AFCRDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAI---ASSPEGAKALLE-SGAVPALCEIIPNQ---SF 154 (543)
T ss_pred HHcCCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH---HcCcHhHHHHHh-cCCHHHHHHHHHhC---cc
Confidence 998855 432221123679999999988776 9999999999999 788888888876 79999999999985 67
Q ss_pred hhHHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 258 GLKVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
..+.|+.+|.++.........--. ...++.+-..........+-..+..|..+-..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 788999999998765431111111 12344444444444455566677777666543
No 82
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.14 E-value=0.0004 Score=66.00 Aligned_cols=237 Identities=16% Similarity=0.042 Sum_probs=164.0
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH
Q 014817 107 LLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE 186 (418)
Q Consensus 107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 186 (418)
|-..++++.++. -..-+++.|..+... ++.|..++.+.++..++..+.+... +-++|-+.+-++..|..+. .
T Consensus 161 l~~~l~~~~~~~-~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~-----~~QlQYqsifciWlLtFn~-~ 232 (442)
T KOG2759|consen 161 LKEQLQSSTNND-YIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKC-----GFQLQYQSIFCIWLLTFNP-H 232 (442)
T ss_pred HHHHHhccCCCc-hHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCc-----chhHHHHHHHHHHHhhcCH-H
Confidence 333444433222 356788999999875 5789999999999999999953322 6789999999999999887 4
Q ss_pred HHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccch----hhhhHhhchhhhHHHHHHHhhcCC-CChhhhH
Q 014817 187 CMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQ----ELRAQISNLDEIFEGVIDILKNLS-SYPRGLK 260 (418)
Q Consensus 187 ~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~----~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~ 260 (418)
..+.+...+.|+.|+.++++. ...+.+..+.+++|+.+...+. +.+..+. .+.++.-++.|+... +|++...
T Consensus 233 ~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~ 310 (442)
T KOG2759|consen 233 AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVD 310 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHH
Confidence 456667789999999999876 4667778899999997322122 3333343 234566666665432 2444333
Q ss_pred HHHHHH-------HHHccc------------------------cccHHHHHHc--CchHHHHHHhcCC-CcccHHHHHHH
Q 014817 261 VGIKAL-------FALCLV------------------------KQTRYKAVAA--GAAETLVDRLADF-DKCDAERALAT 306 (418)
Q Consensus 261 ~a~~aL-------~~L~~~------------------------~~n~~~i~~~--G~v~~Lv~lL~~~-~~~~~~~a~~~ 306 (418)
..-..- ..|++. .+|..++-+. -.+..|+.+|... |+.+..-|+.=
T Consensus 311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D 390 (442)
T KOG2759|consen 311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence 322221 222221 2355555553 4788899999754 57777777777
Q ss_pred HHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 307 VELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 307 L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
+.... .+|+++..+... ||=..++++|.+++++++-+|+.++..+-.
T Consensus 391 Ige~Vr~yP~gk~vv~k~-ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 391 IGEYVRHYPEGKAVVEKY-GGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhCchHhHHHHHh-chHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 77666 468899888885 999999999999999999999999887643
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.13 E-value=0.00046 Score=66.81 Aligned_cols=254 Identities=15% Similarity=0.074 Sum_probs=175.1
Q ss_pred HHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC
Q 014817 127 RLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH 206 (418)
Q Consensus 127 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~ 206 (418)
.|-.+.+..+.-|..+.-.-..+.+..++-++ +.+++..+..+++.+..+. +.-..+.+-+.--.++.-|..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-------~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~ 77 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-------SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDR 77 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcc
Confidence 34444455565565555444555555555444 4789999999998887776 556666666666666777755
Q ss_pred C--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc
Q 014817 207 S--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA 284 (418)
Q Consensus 207 ~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~ 284 (418)
. +..-|+.|.+.++.+. ..+.....+ ..|++..++.+.++. +...+..++.+|..|+..+. ..+++.||
T Consensus 78 ~~~~~~ER~QALkliR~~l---~~~~~~~~~--~~~vvralvaiae~~--~D~lr~~cletL~El~l~~P--~lv~~~gG 148 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFL---EIKKGPKEI--PRGVVRALVAIAEHE--DDRLRRICLETLCELALLNP--ELVAECGG 148 (371)
T ss_pred cCCChHHHHHHHHHHHHHH---HhcCCcccC--CHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhCH--HHHHHcCC
Confidence 4 4667889999999994 443344455 268999999999997 78899999999999987653 45678999
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC-------Ch--HHHHHHHHHHHHHhcC
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI-------SD--RATEYAAGALAALCSA 355 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-------~~--~~~~~A~~~L~~l~~~ 355 (418)
+..|++.+.++..++.+..+.++..+..++..|..+..+ --+..++.-+... +. ..-..+..++..+=+.
T Consensus 149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 149 IRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 999999998776668889999999999999999988763 3455555544332 11 1233444444444331
Q ss_pred CHHHHHH-HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 356 SERCQRD-AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 356 ~~~~~~~-~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
=+-.... +-+..++..|+..|..+ ++++|+....++-.+-+..
T Consensus 228 W~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 228 WPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCC
Confidence 1111100 11125788899999888 8889999888888877753
No 84
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.13 E-value=0.00021 Score=71.12 Aligned_cols=269 Identities=17% Similarity=0.094 Sum_probs=172.4
Q ss_pred HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccc---ccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817 125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNI---NVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS 201 (418)
Q Consensus 125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv 201 (418)
+..|+-+.+ ++.+.+.+....++..|+++-.-.. ......+..+...|+.+|+|+.......|+.+.+.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 445555554 3455556666666777766651000 000002678999999999999988878899999999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC-------C--------CChhhhHH
Q 014817 202 SLLFHS-----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL-------S--------SYPRGLKV 261 (418)
Q Consensus 202 ~~L~~~-----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~--------~~~~~~~~ 261 (418)
+.|+.. +.+..-...++|+-+. +...+.+..+....+++..|+..|... . .+......
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlT--a~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLT--ALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHh--cCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 999887 7888899999999996 667777777766667888877766421 0 03345677
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcCC---------CcccHHHHHHHHHHHhcC-HhH-------HHHHH---
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADF---------DKCDAERALATVELLCRI-PAG-------CAEFA--- 321 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~---------~~~~~~~a~~~L~~L~~~-~~~-------~~~i~--- 321 (418)
++++++|+.........-.+.+.++.|+.++..- .......++.+|.++--. ... ...+.
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 8899999976644333223355666666655311 123455666666666311 111 00000
Q ss_pred hccCChHHHHHHHhc-----CC---hHHHHHHHHHHHHHhcCCHHHHHHHHh----------------cChHHHHHHHHh
Q 014817 322 EHALTVPLLVKTILK-----IS---DRATEYAAGALAALCSASERCQRDAVS----------------AGVLTQLLLLVQ 377 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~-----~~---~~~~~~A~~~L~~l~~~~~~~~~~~~~----------------~g~i~~L~~ll~ 377 (418)
.....+..|+++|.. .. ...-..-+.+|.+++..+...|+.+.. ...-.+|++++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 111245566666644 11 123345566667777765666665544 346778999997
Q ss_pred hCCCHHHHHHHHHHHHHHHh
Q 014817 378 SDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 378 ~~~~~~~~~~A~~~L~~l~~ 397 (418)
+. .+.+|+.++.+|-.|++
T Consensus 319 ~~-~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 319 SP-DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CC-CchHHHHHHHHHHHHHh
Confidence 77 59999999999988886
No 85
>PTZ00429 beta-adaptin; Provisional
Probab=98.10 E-value=0.001 Score=69.93 Aligned_cols=254 Identities=15% Similarity=0.031 Sum_probs=164.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.+..|-+.|.+.+ ...+..|++.+-......... ..+.+-+++++.+. +.++++-..-.|.+++
T Consensus 32 ge~~ELr~~L~s~~--~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~-------d~elKKLvYLYL~~ya 96 (746)
T PTZ00429 32 GEGAELQNDLNGTD--SYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPST-------DLELKKLVYLYVLSTA 96 (746)
T ss_pred chHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHc
Confidence 45666777777653 334567787766554332221 22456667777666 5677777666666666
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
...++. .. -++..+.+=+.+.++.+|..|+++|.++ . .++ +. .-+++++.+.+.+. ++-+++.
T Consensus 97 ~~~pel-al----LaINtl~KDl~d~Np~IRaLALRtLs~I---r-~~~----i~--e~l~~~lkk~L~D~--~pYVRKt 159 (746)
T PTZ00429 97 RLQPEK-AL----LAVNTFLQDTTNSSPVVRALAVRTMMCI---R-VSS----VL--EYTLEPLRRAVADP--DPYVRKT 159 (746)
T ss_pred ccChHH-HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcC---C-cHH----HH--HHHHHHHHHHhcCC--CHHHHHH
Confidence 544221 12 2467778888889999999999988888 2 222 22 22667788888877 8999999
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
|+.++.+|...+. ..+.+.|.++.|.++|.+.++.++.+|+.+|..+......+-.+ .+ +.+..|+..+..-++-.
T Consensus 160 Aalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~-~~~~~Ll~~L~e~~EW~ 235 (746)
T PTZ00429 160 AAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SN-EWVNRLVYHLPECNEWG 235 (746)
T ss_pred HHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HH-HHHHHHHHHhhcCChHH
Confidence 9999999976544 23456788899999999989999999999999987543222222 22 44566666665556666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
|-..+.+|..-.-.+.. + ...++..+...|++. ++.+.-.|.+++-.+..
T Consensus 236 Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 236 QLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQ-NPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Confidence 66655555332211111 1 134566666777666 77777777777666653
No 86
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0017 Score=62.18 Aligned_cols=241 Identities=14% Similarity=0.109 Sum_probs=170.4
Q ss_pred HHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh---------hHHHhhccc
Q 014817 123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE---------TECMEIASD 193 (418)
Q Consensus 123 ~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~i~~ 193 (418)
..+..+..++.. |.--..+++.++++.|+.+|... |.++....+..|..|.-.+ +..-..+++
T Consensus 103 d~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHe-------NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd 174 (536)
T KOG2734|consen 103 DIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHE-------NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD 174 (536)
T ss_pred HHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCC-------CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence 456677777654 66666799999999999999877 6788888888888875332 123556678
Q ss_pred CCchHHHHHHhcCCC------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817 194 ADKITSLSSLLFHSS------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF 267 (418)
Q Consensus 194 ~g~i~~Lv~~L~~~~------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~ 267 (418)
.++++.||+-+..-+ .....++..++-|++ ...++.+..+++ .|.+.-|+.-+.....-..-...|...|.
T Consensus 175 g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv--~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLa 251 (536)
T KOG2734|consen 175 GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLV--EVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILA 251 (536)
T ss_pred ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH--hccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHH
Confidence 899999988776533 333456778888886 566777777766 57777666644433113345667778887
Q ss_pred HHcccc-ccHHHHHHcCchHHHHHHhc----CC-----CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817 268 ALCLVK-QTRYKAVAAGAAETLVDRLA----DF-----DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337 (418)
Q Consensus 268 ~L~~~~-~n~~~i~~~G~v~~Lv~lL~----~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 337 (418)
-+-.+. +|+.....-+++..+++-+. ++ ..+..++.-..|..+...+++|+.+... .++. +..++...
T Consensus 252 illq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlq-Lm~Lmlr~ 329 (536)
T KOG2734|consen 252 ILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQ-LMNLMLRE 329 (536)
T ss_pred HHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHH-HHHHHHHH
Confidence 776654 58888888999999999885 11 2356677888888888899999999985 4444 44555555
Q ss_pred ChHHHHHHHHHHHHHhcCCH--HHHHHHHhcChHHHHHHHH
Q 014817 338 SDRATEYAAGALAALCSASE--RCQRDAVSAGVLTQLLLLV 376 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll 376 (418)
....+..|+++|-.+..+.+ ..+...++.+++..+.-+.
T Consensus 330 Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 330 KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 66678899999998777544 5566677766665554443
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00058 Score=62.44 Aligned_cols=274 Identities=15% Similarity=0.075 Sum_probs=179.5
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
...+|+++.+.++++ +..|+..+..+... ..+.... +.-.++.+.+++.... + .+.|+.+|.|++.
T Consensus 5 l~elv~ll~~~sP~v--~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-------~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPV--RKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-------P--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHHhccCChHH--HHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-------c--ccHHHHHHHHHHh
Confidence 457888998887654 36677777777654 2222111 1336777888887653 2 5678889999997
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-c-----hhhhHHHHHHHhhcCCCC-
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-N-----LDEIFEGVIDILKNLSSY- 255 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~-----~~g~i~~Lv~lL~~~~~~- 255 (418)
.. ..++.+.+. .+..+++.+.+.....-...+.+|.|| +..++....+- . ..|.+.......+.+. +
T Consensus 72 ~~-~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NL---s~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-n~ 145 (353)
T KOG2973|consen 72 KE-ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNL---SRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-NA 145 (353)
T ss_pred hH-HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHh---ccCchHHHHHHHhcccccccchHHHHHHHhCccc-cc
Confidence 77 677877766 888899998887666677789999999 66665554442 1 1344444444455442 3
Q ss_pred hhhhHHHHHHHHHHccccccHHHHHHcCchHHH-HHHhcCCCcccH-HHHHHHHHHHhcCHhHHHHHHhc-cCC------
Q 014817 256 PRGLKVGIKALFALCLVKQTRYKAVAAGAAETL-VDRLADFDKCDA-ERALATVELLCRIPAGCAEFAEH-ALT------ 326 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~L-v~lL~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~-~g~------ 326 (418)
..-....+-.+.||+.....|.-+.+...++.= +.-+.+.+..++ ...+++|.|.|-.......+... ...
T Consensus 146 ~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLl 225 (353)
T KOG2973|consen 146 YAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILL 225 (353)
T ss_pred ccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHh
Confidence 244567888899999999888888776533321 111223233332 45778888877655554444331 011
Q ss_pred ---------------hHHHHHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-CCHHHH
Q 014817 327 ---------------VPLLVKTILK-----ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-CTDRAK 385 (418)
Q Consensus 327 ---------------i~~Lv~~l~~-----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~ 385 (418)
+|.=++++-. .++.++..-+.+|.-||. ...-|+.+++.|+-+. ++-++.+ .++.++
T Consensus 226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpi-lRElhk~e~ded~~ 303 (353)
T KOG2973|consen 226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPI-LRELHKWEEDEDIR 303 (353)
T ss_pred hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHH-HHHHhcCCCcHHHH
Confidence 2222344431 578888999999999998 6677787777777555 4666643 378889
Q ss_pred HHHHHHHHHHHhh
Q 014817 386 RKAQLLLKLLRDS 398 (418)
Q Consensus 386 ~~A~~~L~~l~~~ 398 (418)
+++-.+.++|-+-
T Consensus 304 ~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 304 EACEQVVQMLVRL 316 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988874
No 88
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.09 E-value=3.8e-06 Score=53.85 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=37.8
Q ss_pred ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 014817 272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR 312 (418)
Q Consensus 272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 312 (418)
+++++..+++.|++|.|+++|.+++..+++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35688999999999999999999999999999999999973
No 89
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.06 E-value=1.9e-06 Score=78.77 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=54.6
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC----CCCcccHHHHHHHHHH
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTD----FTLIPNHTLRRLIQDW 80 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~----~~l~~n~~L~~~i~~~ 80 (418)
++-....|++|+.+|.|+-++ .|=|||||+||-+++.. ..+||.|...+.. ..+..++.|++++-++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 444567999999999999988 59999999999999997 8889999876643 3456667777776554
No 90
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.05 E-value=5.7e-06 Score=74.01 Aligned_cols=66 Identities=18% Similarity=0.373 Sum_probs=55.2
Q ss_pred ccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHh
Q 014817 18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSP-LTDFTLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~-l~~~~l~~n~~L~~~i~~~~~~ 83 (418)
+.||+|+.++++|+-+ +|||+||..||+..+-...+.||.|... +--+.+.|+...+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 7999999999999988 6999999999999887668889999753 3446778888777778877653
No 91
>PTZ00429 beta-adaptin; Provisional
Probab=98.05 E-value=0.0022 Score=67.54 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=148.4
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
+..+.+=+.++ |+.++..|+..|+.+.... .-.. .+..+.+.|.+.++.+|..|+-++..+ ..
T Consensus 107 INtl~KDl~d~-------Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kl---y~ 169 (746)
T PTZ00429 107 VNTFLQDTTNS-------SPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKL---FH 169 (746)
T ss_pred HHHHHHHcCCC-------CHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHH---Hh
Confidence 45555555444 7899999999999876533 2222 367788888899999999999999999 44
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
.+. ..+ ...|.++.|.++|.+. ++.+..+|+.+|..+......... ...+.+..|+..|.+.+.-.+...+.+|
T Consensus 170 ~~p--elv-~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 170 DDM--QLF-YQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred hCc--ccc-cccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 332 233 3367899999999988 899999999999999865543322 3355667777777665555555555555
Q ss_pred HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHH
Q 014817 308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKR 386 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 386 (418)
.... +...... ...+..+...|.+.|+.+.-.|++++.++... +++....+ -..+..+|+.++ ++ ++++|-
T Consensus 244 ~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqy 315 (746)
T PTZ00429 244 AAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RR-DAETQY 315 (746)
T ss_pred HhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CC-CccHHH
Confidence 4322 1111111 13466778888888999999999999998863 23332221 112335566654 44 778888
Q ss_pred HHHHHHHHHHhhC
Q 014817 387 KAQLLLKLLRDSW 399 (418)
Q Consensus 387 ~A~~~L~~l~~~~ 399 (418)
.+..-|..+...+
T Consensus 316 vaLr~I~~i~~~~ 328 (746)
T PTZ00429 316 IVCKNIHALLVIF 328 (746)
T ss_pred HHHHHHHHHHHHC
Confidence 8887777776654
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.6e-06 Score=87.77 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=48.3
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 69 (418)
-++||+|..=.+|-|++.|||.||..||+.........||.|..+|.+.++.+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 46999999999999999999999999999998866789999999998877755
No 93
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.4e-06 Score=85.94 Aligned_cols=72 Identities=33% Similarity=0.526 Sum_probs=67.2
Q ss_pred CCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 12 VQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
.++|++|..|+...+|+|||++| +|++.||+.|+.++-. ..+.|.|+.++..+.+.||..|+.-|+.|..+.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999998 9999999999999875 678999999999999999999999999998764
No 94
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.4e-06 Score=81.54 Aligned_cols=54 Identities=31% Similarity=0.563 Sum_probs=46.5
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcC----CCCCCCCCCCCCCCCCccc
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG----NTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~----~~~cp~~~~~l~~~~l~~n 70 (418)
+..||||++...-|+.+.|||.||-.||-.+|..+ ...||.|+..+...++.|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 77999999999999999999999999999998743 4569999988877665554
No 95
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.02 E-value=4.7e-06 Score=60.69 Aligned_cols=39 Identities=36% Similarity=0.688 Sum_probs=32.1
Q ss_pred CcCccccccCC-------------eecCCCCcccHHHHHHHHHcCCCCCCCCC
Q 014817 20 CPISLELMCDP-------------VTVCTGQTYDRPSIESWVATGNTTCPVTR 59 (418)
Q Consensus 20 Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~ 59 (418)
|+||++.|.+| +..+|||.|-..||.+|++. ..+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999544 24489999999999999986 55999995
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.02 E-value=1.1e-05 Score=51.65 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=37.8
Q ss_pred CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
++++++.+++. |+++.|+++|.+.+..+++.|+++|.|||+
T Consensus 1 ~~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEA-GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHT-THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999995 999999999999999999999999999984
No 97
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.3e-06 Score=78.78 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=57.3
Q ss_pred CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC-----CcccHHHHHHHHHHHHh
Q 014817 10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT-----LIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~-----l~~n~~L~~~i~~~~~~ 83 (418)
.+..++.+|.|-||...+..||+++|||+||+.||.+.++. ...||.|+..+.... ..+|+.+..+|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999997774 677999998875321 12355556777777554
No 98
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.93 E-value=9.3e-06 Score=79.13 Aligned_cols=70 Identities=24% Similarity=0.490 Sum_probs=56.7
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHHh
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP-NHTLRRLIQDWCVA 83 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~-n~~L~~~i~~~~~~ 83 (418)
.+.+++.||+|..+++||+.. .|||.||+.|+.+|... +..||.|+..+......+ ...+++.+..|...
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 467789999999999999995 99999999999999987 888999988776444433 44667777766443
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.91 E-value=0.0015 Score=64.07 Aligned_cols=188 Identities=15% Similarity=-0.044 Sum_probs=105.3
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
+..|+..|.+. ++.++..++.+|..+-. .+..+.|+.+|.+.++.++..++.++... .
T Consensus 88 ~~~L~~~L~d~-------~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~- 145 (410)
T TIGR02270 88 LRSVLAVLQAG-------PEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAH---R- 145 (410)
T ss_pred HHHHHHHhcCC-------CHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---c-
Confidence 67777777665 35677777777765432 23456666777666666665555333332 0
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
....+.|..+|++. ++.++..|+++|..|- ...+++.|...+.+.++.++..|+..|
T Consensus 146 -----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 146 -----------HDPGPALEAALTHE--DALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred -----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 11335566666655 6777777777776653 223444455566666666666666666
Q ss_pred HHHhcCHhHHHHHHh---c------------------cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817 308 ELLCRIPAGCAEFAE---H------------------ALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSA 366 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~---~------------------~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~ 366 (418)
..+.. ++....+.. . ..+++.|..++.. +.++..++.+|..+-. .
T Consensus 203 ~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~-----------p 268 (410)
T TIGR02270 203 LLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD-----------V 268 (410)
T ss_pred HHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC-----------c
Confidence 54432 221111111 0 0123333333332 2255555555544332 3
Q ss_pred ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 367 GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 367 g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..++.|+..+.. +..++.|...++.+..
T Consensus 269 ~av~~L~~~l~d---~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 269 EAAPWCLEAMRE---PPWARLAGEAFSLITG 296 (410)
T ss_pred chHHHHHHHhcC---cHHHHHHHHHHHHhhC
Confidence 367777777743 3499999999999988
No 100
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.00054 Score=68.53 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=123.8
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhh-cc-c--CCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEI-AS-D--ADKITSLSSLLFHSSIEVRVNSAALIEI 221 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-i~-~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~ 221 (418)
.++|.|..+|.+++ ...++.|..+|..++.+..+.-.. +. + .-.+|.++++.++.++.+|..|...+..
T Consensus 128 elLp~L~~~L~s~d-------~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-------YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred hHHHHHHHHhcCCc-------ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 36889999998874 566899999999988665332111 11 1 2358999999999999999999998888
Q ss_pred HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817 222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE 301 (418)
Q Consensus 222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 301 (418)
++. ......-..| ...++.|..+..+. +++++++.+.+|..|-.....+-.--=.|+|+.++..-++.+.++.-
T Consensus 201 ~i~-~~~qal~~~i---D~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VAL 274 (885)
T KOG2023|consen 201 FII-IQTQALYVHI---DKFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVAL 274 (885)
T ss_pred eee-cCcHHHHHHH---HHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHH
Confidence 741 1222222222 45888999988777 89999999999999975543332221246777777777788888999
Q ss_pred HHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHH
Q 014817 302 RALATVELLCRIPAGCAEFAEH-ALTVPLLVKTI 334 (418)
Q Consensus 302 ~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l 334 (418)
+|+.....+|..+..+..+..+ ...||.|++-|
T Consensus 275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9999999999887666555443 13455555443
No 101
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0064 Score=64.04 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHccccccHHHH-----HHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817 258 GLKVGIKALFALCLVKQTRYKA-----VAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLV 331 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i-----~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 331 (418)
-...++.||.||-.....-..+ .=-|-++.+..+|. .+++.++..|+.++..+..+.+....++.. |.+-.|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHHH
Confidence 3456777888876544322222 12477888888886 457889999999999999999999999996 8777777
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
.+| ++-+..++.++.+|+.|+. +++...+..+.|++..++.++-...++..|.+|+.++..|..
T Consensus 1820 ~lL-HS~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1820 TLL-HSQPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHH-hcChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 755 4667789999999999998 888899999999999999998765578899999999988765
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.80 E-value=3.1e-05 Score=73.09 Aligned_cols=51 Identities=29% Similarity=0.516 Sum_probs=45.9
Q ss_pred ccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817 18 FRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 69 (418)
+.|.|++++-++||+.+ +||.|+|+-|+++..+ +.+||+++++++..++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 46999999999999996 9999999999999987 788999999998776655
No 103
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0015 Score=59.74 Aligned_cols=190 Identities=19% Similarity=0.139 Sum_probs=131.1
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
+..++.+|.+.++.++..|+..+.+|+ .. ..+.....+...++.|.+++... .+ .+.|+.+|.|++....-+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt---~~-~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLT---GR-GLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcc---cc-chhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHhhHHHH
Confidence 456889999999999999999999994 33 44444433456888899999877 44 788999999999999988
Q ss_pred HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-cc----CChHHHHHHHhc--CChHH-HHHHHHH
Q 014817 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HA----LTVPLLVKTILK--ISDRA-TEYAAGA 348 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~Lv~~l~~--~~~~~-~~~A~~~ 348 (418)
..+++. .+..++..+.++...+....+.+|.||++.+.....+.. .. .++..++...-. .+... -.+-+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888877 778888888877677888999999999987766554432 11 234444444433 22222 3566667
Q ss_pred HHHHhcCCHHHHHHHHhcChHH--HHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 349 LAALCSASERCQRDAVSAGVLT--QLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 349 L~~l~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+.||+. .+..|..+.....++ +|+. +.+..+...|...+++|+|++-
T Consensus 156 f~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cF 204 (353)
T KOG2973|consen 156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCF 204 (353)
T ss_pred HHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhc
Confidence 788887 555666666555332 2222 2234345555668889998654
No 104
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.76 E-value=0.0033 Score=61.70 Aligned_cols=151 Identities=17% Similarity=0.055 Sum_probs=114.8
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
+++.|+..|..+. +.++...++.++. ..++ ..++..|+..|.+.++.++..++.+|..+
T Consensus 55 a~~~L~~aL~~d~------~~ev~~~aa~al~--~~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---- 113 (410)
T TIGR02270 55 ATELLVSALAEAD------EPGRVACAALALL--AQED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---- 113 (410)
T ss_pred HHHHHHHHHhhCC------ChhHHHHHHHHHh--ccCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence 6788888886543 4566665555443 2222 12489999999999999999998888777
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT 306 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~ 306 (418)
...+..+.|+.+|++. ++.++..++.++.. ......+.++.+|.+.+..+...|+.+
T Consensus 114 ----------~~~~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 114 ----------GGRQAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRA 170 (410)
T ss_pred ----------CchHHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHH
Confidence 2245778899999888 89999888877766 123356789999999899999999999
Q ss_pred HHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 014817 307 VELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAAL 352 (418)
Q Consensus 307 L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l 352 (418)
|..|-. ...++.|...+.+.++.++..|+.++..+
T Consensus 171 LG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 171 LGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 987653 35677788888889999999999988665
No 105
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00021 Score=54.01 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=69.5
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
||.|++.|..+. ++.++..|+.+|+.+. + ..+++.|++++++.++.+|..|+.+|..+ .
T Consensus 1 i~~L~~~l~~~~------~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP------DPQVRAEAARALGELG--D---------PEAIPALIELLKDEDPMVRRAAARALGRI---G- 59 (88)
T ss_dssp HHHHHHHHHTSS------SHHHHHHHHHHHHCCT--H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC---H-
T ss_pred CHHHHHHHhcCC------CHHHHHHHHHHHHHcC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-
Confidence 578999994443 6899999999999652 2 14589999999999999999999999988 2
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF 267 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~ 267 (418)
...+++.|.+++.++. +..++..|..+|.
T Consensus 60 ----------~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----------DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp ----------HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 2447899999999874 5667888888874
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.67 E-value=0.00043 Score=62.70 Aligned_cols=189 Identities=15% Similarity=0.166 Sum_probs=112.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817 205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG 283 (418)
Q Consensus 205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G 283 (418)
.+.+.+.|..+..-|..++.+....+....+... ..++..+...+.+. ...+...|+.++..|+........-.-..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5678999999999999995211112333333211 12445666666665 66789999999999997755443333445
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDA 363 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 363 (418)
.+|.|+..+.++...+.+.|..+|..++.+-..-..+. ++.+...+.+.++.++..++..|..+...-+.....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 88999999988888888999999998886433112221 2345555677899999999999988876333111111
Q ss_pred Hh----cChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC
Q 014817 364 VS----AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ 401 (418)
Q Consensus 364 ~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 401 (418)
.. ..+++.+...+... ++.+|+.|..++..+..++..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCH
Confidence 11 33566666666555 999999999999999887654
No 107
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=6.8e-05 Score=74.04 Aligned_cols=72 Identities=31% Similarity=0.463 Sum_probs=65.8
Q ss_pred CCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 12 VQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
-++|++|..|+.-.+|+|||+++ +|-+.+|+.|..++-. ..+.|.-+.|+..+++.||..|++-|-.|....
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 48999999999999999999997 8999999999998775 678999999999999999999999999986653
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.63 E-value=0.00033 Score=52.93 Aligned_cols=86 Identities=24% Similarity=0.234 Sum_probs=68.1
Q ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817 197 ITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 197 i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
|+.|++.| ++.++.+|..++.+|..+ . ...+++.|+++++++ ++.++..|+++|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~-----------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---G-----------DPEAIPALIELLKDE--DPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---T-----------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---C-----------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----
Confidence 67899999 888999999988888866 1 124789999999887 8999999999999882
Q ss_pred HHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHH
Q 014817 276 RYKAVAAGAAETLVDRLADFDK-CDAERALATVE 308 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~ 308 (418)
...+++.|.+++.+++. .++..|+.+|.
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34489999999987544 45677777663
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00043 Score=67.60 Aligned_cols=197 Identities=11% Similarity=-0.013 Sum_probs=146.4
Q ss_pred HHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817 175 ALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS 254 (418)
Q Consensus 175 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 254 (418)
..|..++.+..-.|..+.+..+.++|+++|..+...+.--++..+.|+. -.....+..+-. .|+|..|+.++.+.
T Consensus 411 l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~v--v~fsnL~~~fL~-~~iIdvl~~~v~sK-- 485 (743)
T COG5369 411 LFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKV--VPFSNLGAGFLE-KSIIDVLVNLVMSK-- 485 (743)
T ss_pred HHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhhee--eeccchHHHHHH-hhHHHHHHHHhhcc--
Confidence 3455666666667889999999999999998876666667788888885 456666666644 78999999999988
Q ss_pred ChhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH-------HhccC
Q 014817 255 YPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF-------AEHAL 325 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i-------~~~~g 325 (418)
+...+.+..|.|+++--+.+ .+-+++..-++..++++..+++-.+++.++.+|+|+..+..-.++. ....-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 78899999999999997765 4566678889999999999999999999999999998633221111 11101
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh-cChHHHHHHHH
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS-AGVLTQLLLLV 376 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll 376 (418)
....|++.+...++...+..+-+|.+++..+.+.++.+.+ ...+..+-++|
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 2234566666678887888888888888867777776655 34555544444
No 110
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.57 E-value=7.8e-05 Score=54.84 Aligned_cols=46 Identities=24% Similarity=0.430 Sum_probs=36.7
Q ss_pred ccCcCccccccC-Ceec-CCCCcccHHHHHHHHHc--CCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCD-PVTV-CTGQTYDRPSIESWVAT--GNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~ 63 (418)
-.||.|+..-.| |++. .|||.|-..||.+|++. ....||.|+++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 357777776666 7766 79999999999999985 3578999998764
No 111
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.008 Score=60.46 Aligned_cols=272 Identities=15% Similarity=0.107 Sum_probs=170.3
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh----cChHHHHHHHhhcccccccCCChhHHHHHHHH
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS----HNVRAILSQVFFTNINVKTASSPELAHESLAL 176 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~ 176 (418)
++.++.|.+.|.+.+.+. +..|.++|.+++.++..--+.=+- .-.+|.++++.+.+ ++.++..|+..
T Consensus 127 pelLp~L~~~L~s~d~n~--~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-------spkiRs~A~~c 197 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNT--CEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-------SPKIRSHAVGC 197 (885)
T ss_pred hhHHHHHHHHhcCCcccc--cchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-------ChhHHHHHHhh
Confidence 356788999998876443 378999999999765542221000 12678888888877 68999999998
Q ss_pred HhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCC
Q 014817 177 LVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSS 254 (418)
Q Consensus 177 L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~ 254 (418)
+..+.... .+..+. -..+++.|..+-...++++|.+.+.+|..|. .... ..+.-+ .++++-.+...++.
T Consensus 198 vNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Ll--evr~---dkl~phl~~IveyML~~tqd~-- 268 (885)
T KOG2023|consen 198 VNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLL--EVRP---DKLVPHLDNIVEYMLQRTQDV-- 268 (885)
T ss_pred hhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH--HhcH---HhcccchHHHHHHHHHHccCc--
Confidence 77554432 122222 2346677777777789999999999999994 2221 133221 46788888777777
Q ss_pred ChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCc-----------------------------------
Q 014817 255 YPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDK----------------------------------- 297 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~----------------------------------- 297 (418)
+..+.-.|+.....++...-.+..+.. ...||.|++-+.-.+.
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~ 348 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGE 348 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcc
Confidence 788999999999999988744444433 3566666654421100
Q ss_pred ---------------------ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817 298 ---------------------CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 298 ---------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~ 356 (418)
+++.-++++|.-|+. --+..+.. -.+|.|-+.|.+..-.++|.++-+|.+|+.|-
T Consensus 349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--vf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc 424 (885)
T KOG2023|consen 349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--VFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC 424 (885)
T ss_pred ccccccccccccccccccccccHhhccHHHHHHHHH--hhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH
Confidence 111222223332221 11122222 12344444455577788999999999998732
Q ss_pred HHHHHHHHhc--ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 357 ERCQRDAVSA--GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 357 ~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+-++.. ..++.|+.+|..- .+-+|.-.+|+|...+.+
T Consensus 425 ---M~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 425 ---MQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW 464 (885)
T ss_pred ---hhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence 2212221 3678888888555 788888888888877664
No 112
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.50 E-value=0.0027 Score=53.15 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=101.1
Q ss_pred hhhHHHHHHHhhcCCC----ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhc
Q 014817 239 DEIFEGVIDILKNLSS----YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCR 312 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~----~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~ 312 (418)
.||+..|+++++++.. ..+....++.++..|-.++-.-...++..-|..++..+... +..+...|+.+|.+++.
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 5789999999999841 14677889999999888776566777777888888888743 57899999999999998
Q ss_pred CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHH
Q 014817 313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAV 364 (418)
Q Consensus 313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~ 364 (418)
++......+..+=.++.|+.+|...+..+|.+|+..+-+|.. .++..|+++.
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 877766666655789999999999999999999999888877 4444555443
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.01 Score=57.05 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=105.9
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
.++.+.+.+.+. +..++..|...+..+.. ..+++.|..+|.+.+..+|..|+.+|..+
T Consensus 44 ~~~~~~~~l~~~-------~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---- 101 (335)
T COG1413 44 AADELLKLLEDE-------DLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---- 101 (335)
T ss_pred hHHHHHHHHcCC-------CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----
Confidence 577778888776 36778877777554432 24688899999999999999888877777
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCccc------
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCD------ 299 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~------ 299 (418)
.....++.|+..+.+ . +..++..+.++|..+-.. .++..++..+.+.....
T Consensus 102 ----------~~~~a~~~li~~l~~d~--~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~ 159 (335)
T COG1413 102 ----------GDPEAVPPLVELLENDE--NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALD 159 (335)
T ss_pred ----------CChhHHHHHHHHHHcCC--cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhcc
Confidence 123467888888885 5 788999999998877432 23677777777644221
Q ss_pred ------HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817 300 ------AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 300 ------~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~ 356 (418)
+..+...|.. +.. ...++.+...+...+..++..|+.+|..+...+
T Consensus 160 ~~~~~~r~~a~~~l~~----------~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 160 AALLDVRAAAAEALGE----------LGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred chHHHHHHHHHHHHHH----------cCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 1122222221 111 356778888888888888999988888877743
No 114
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.3e-05 Score=68.81 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=39.6
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
|-|-||++.|.+||+..|||+||..|-.+-+.. ...|++|++...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 789999999999999999999999998777665 577999987764
No 115
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.48 E-value=0.033 Score=55.63 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=148.3
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCC
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DAD 195 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g 195 (418)
+.....+|++.|.+..-.++..|..+++.|+.+.++..|+...+.. .+.++.-....+|-.+.....+.+..++ +.+
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~--~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS--QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC--CChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 3345689999999999999999999999999999999998763211 1356677777777666655546676666 457
Q ss_pred chHHHHHHhcC-----------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC---C--
Q 014817 196 KITSLSSLLFH-----------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---S-- 253 (418)
Q Consensus 196 ~i~~Lv~~L~~-----------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~---~-- 253 (418)
++..|+..|.. .+.+....+.++++|+. ........ ....+.++.|+.++..- .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit--~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT--LHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh--hccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence 77777776532 12444567888889984 22222111 11234566666654421 1
Q ss_pred --CChhhhHHHHHHHHHHccccc-c-------HH----HHHHcCchHHHHHHhcC----C-C-c--ccHHHHHHHHHHHh
Q 014817 254 --SYPRGLKVGIKALFALCLVKQ-T-------RY----KAVAAGAAETLVDRLAD----F-D-K--CDAERALATVELLC 311 (418)
Q Consensus 254 --~~~~~~~~a~~aL~~L~~~~~-n-------~~----~i~~~G~v~~Lv~lL~~----~-~-~--~~~~~a~~~L~~L~ 311 (418)
.......++..+|.|+-.... . .. .......+..|+++|.. . + . +...-.+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 123567778888888832110 0 00 01123457777777752 1 1 1 34456777788888
Q ss_pred cC-HhHHHHHHh---------------ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 014817 312 RI-PAGCAEFAE---------------HALTVPLLVKTILKISDRATEYAAGALAALCSASE 357 (418)
Q Consensus 312 ~~-~~~~~~i~~---------------~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~ 357 (418)
.. ...|..+.. ....--.|+++|.+....++..+...|+.||.++.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 65 445555443 11234478888887778999999999999998554
No 116
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.45 E-value=0.00047 Score=62.43 Aligned_cols=181 Identities=15% Similarity=0.073 Sum_probs=110.3
Q ss_pred hcCCCchhhhHHHHHHHHHhhhcC--hhhhhHHhh--cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHH
Q 014817 112 SSESNTYGSRLSALRRLRGLARDS--DKNRSLISS--HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETEC 187 (418)
Q Consensus 112 ~~~~~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 187 (418)
+..+.+...+.+|+..|+.+..++ ......+.+ ...+..+...+.+. +..+...|+.++..++..-
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~~l--- 84 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLARQL--- 84 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHHHH---
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHH---
Confidence 445557888999999999999876 333333332 13445666666554 4568888888888776433
Q ss_pred Hhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh-HHHHHHHhhcCCCChhhhHHHHH
Q 014817 188 MEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI-FEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 188 ~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
+..+. -...++.|++.+.+++.-++..|..+|..+. ..-. . . ..+ ++.+...+.+. ++.++..++.
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~---~~~~----~-~-~~~~~~~l~~~~~~K--n~~vR~~~~~ 153 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAII---ESCS----Y-S-PKILLEILSQGLKSK--NPQVREECAE 153 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHH---TTS-----H----HHHHHHHHHHTT-S---HHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH---HHCC----c-H-HHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 22222 3457899999999999999999999999994 2211 1 1 223 56666677777 8999999999
Q ss_pred HHHHHccccc-cHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 265 ALFALCLVKQ-TRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 265 aL~~L~~~~~-n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
.|..+..... +...+-. ...++.+...+.++++++++.|-.++..+...
T Consensus 154 ~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 154 WLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9988865433 1111111 34677888888899999999988888887643
No 117
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.026 Score=54.30 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=163.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-----Ch----hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-----SD----KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE 172 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-----~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~ 172 (418)
..++.|+..|.-.+.+.. ...+.-|..+... +. .--+.+++.++++.|++-+..-+++.. ....-...
T Consensus 125 n~V~slL~LLgHeNtDI~--iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk-eea~gv~~ 201 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIA--IAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK-EEADGVHN 201 (536)
T ss_pred ccHHHHHHHhcCCCchhH--HHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch-hhhhhhHH
Confidence 345677777766554433 5566666676633 22 234456778999999998865432111 02233456
Q ss_pred HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK 250 (418)
Q Consensus 173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~ 250 (418)
++.++-|+..-.++....+++.|.+.-|+.-+... -..-+.+|..+|.-+. ...++++...+. ..++..|++-+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill--q~s~e~~~~~~~-l~GiD~lL~~la 278 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL--QNSDENRKLLGP-LDGIDVLLRQLA 278 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh--ccCchhhhhhcC-cccHHHHHhhcc
Confidence 67777777765556677777788777766655322 2455677888888885 555668888876 456777776553
Q ss_pred ----cCCC---ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH---hHHHHH
Q 014817 251 ----NLSS---YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP---AGCAEF 320 (418)
Q Consensus 251 ----~~~~---~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~---~~~~~i 320 (418)
+++. ..+..++....|..+-....|+.+++...+++...-+++. .......++++|-.+..++ .+...+
T Consensus 279 ~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kf 357 (536)
T KOG2734|consen 279 VYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKF 357 (536)
T ss_pred hhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence 2211 2356677888888888889999999999898887777765 4455678999998777554 467778
Q ss_pred HhccCChHHHHHHHhc----------CChHHHHHHHHHHHHHhc
Q 014817 321 AEHALTVPLLVKTILK----------ISDRATEYAAGALAALCS 354 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~~----------~~~~~~~~A~~~L~~l~~ 354 (418)
++. +|+..+...... .-....++.+.+|+.+-.
T Consensus 358 Ve~-lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 358 VEI-LGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHH-HhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 884 888888777652 233445788888888765
No 118
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00011 Score=64.21 Aligned_cols=53 Identities=21% Similarity=0.451 Sum_probs=46.7
Q ss_pred CcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817 16 YHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 69 (418)
..|.||+|.+.+.+.+ +-+|||+|+..|.++.... ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 5689999999999976 5589999999999999874 789999999999888765
No 119
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0031 Score=62.10 Aligned_cols=227 Identities=19% Similarity=0.159 Sum_probs=145.8
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
..+-|..+|++. +.+|+..+=.+|.++-..- .+.... --...++.++..+.++.++++..|..-|..+.
T Consensus 209 ~ldGLf~~LsD~-------s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV-- 278 (675)
T KOG0212|consen 209 LLDGLFNMLSDS-------SDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFV-- 278 (675)
T ss_pred HHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHh--
Confidence 455666777665 5777766555555443221 112222 23467899999999999999999988888885
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChh-hhHHHH---HHHHHHccccccHHHHHHc-CchHHHHHHhcCCCcccH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPR-GLKVGI---KALFALCLVKQTRYKAVAA-GAAETLVDRLADFDKCDA 300 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~a~---~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~ 300 (418)
.-... ..+.-..|++..++.++.+. .+. .+..+. ..|..+.+....... ++- -.+..|...+.+...+.+
T Consensus 279 ~i~g~--~~l~~~s~il~~iLpc~s~~--e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tr 353 (675)
T KOG0212|consen 279 KIPGR--DLLLYLSGILTAILPCLSDT--EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETR 353 (675)
T ss_pred cCCCc--chhhhhhhhhhhcccCCCCC--ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHH
Confidence 22221 22222356777777777765 332 333322 235555554443333 443 367777788887777778
Q ss_pred HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH---h
Q 014817 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV---Q 377 (418)
Q Consensus 301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~ 377 (418)
..++.-+..|-....+.-....+ ...+.|++-|++.++.+-..++..+.++|.. ++.. +..+.+..+| .
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h~~-~if~tLL~tLsd~sd~vvl~~L~lla~i~~s-~~~~------~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVHND-SIFLTLLKTLSDRSDEVVLLALSLLASICSS-SNSP------NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhhcc-HHHHHHHHhhcCchhHHHHHHHHHHHHHhcC-cccc------cHHHHHHHHHHHHh
Confidence 88887777777655555555553 7888999999999999999999999999993 2222 3344454444 3
Q ss_pred hCCCHHHHHHHHHHHHHHHh
Q 014817 378 SDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 378 ~~~~~~~~~~A~~~L~~l~~ 397 (418)
.+ ..-.+..+..++|.|+.
T Consensus 426 e~-~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 426 ED-TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hh-hHHHHhhhhHHHHHHHH
Confidence 44 66677788888888876
No 120
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.40 E-value=0.0013 Score=50.79 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817 299 DAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSA 366 (418)
Q Consensus 299 ~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~ 366 (418)
.+...+.+|.+|+ .+...+..+++. |+++.++....- .+|-++|+|+.++.+||.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567788999999 677889999986 889999998644 799999999999999999999988866553
No 121
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.40 E-value=0.0077 Score=58.41 Aligned_cols=206 Identities=18% Similarity=0.123 Sum_probs=142.2
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
..+.+..++-+.+.++|..+.++++++ -.+.+.-..+.. .+.-..++.-|.....+...++.|++.++.+....++
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~---i~d~~~l~~~~~-l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYL---ISDEESLQILLK-LHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHH---HcCHHHHHHHHH-cCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 344444444455599999999999999 455555555544 4555556666766533667899999999998766544
Q ss_pred HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
... +-.|++..++.+..+.+...+..|+.+|..|+- +++ .+.. .||+..|++.+..+.....+..+.++..+-.
T Consensus 102 ~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 102 PKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred ccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 333 366789999999998888999999999998884 333 3334 6999999999988766678888888888776
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhhC------CCH--HHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Q 014817 355 ASERCQRDAVSAGVLTQLLLLVQSD------CTD--RAKRKAQLLLKLLRDSWPQDSIGNSDDFA 411 (418)
Q Consensus 355 ~~~~~~~~~~~~g~i~~L~~ll~~~------~~~--~~~~~A~~~L~~l~~~~~~~~~~~~~~~~ 411 (418)
+|..|+-+...--++.++.-.... .+. ..-++++.++..+-+.|.+=-.+...||+
T Consensus 177 -~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~ 240 (371)
T PF14664_consen 177 -SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR 240 (371)
T ss_pred -CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence 677777555433344444444221 122 34456777888888888866566666653
No 122
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00029 Score=44.71 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=35.8
Q ss_pred cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
++++..+++.|+++.|+++|.+++..++..++++|++|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999889999999999999987
No 123
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.38 E-value=0.017 Score=53.29 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 169 LAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 169 v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
.+--|+.+|.++.... +.|..+. +...-..++++++. |..+.+.+..-.++-| +.+....+.|-.-...+.-|
T Consensus 165 Trlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l---Tf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 165 TRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL---TFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 4566788888988777 5566554 45556778888875 5689999999999999 78888776665445678888
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHhcCC---CcccHHH---HHHHHH----HHhcC
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRLADF---DKCDAER---ALATVE----LLCRI 313 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~---a~~~L~----~L~~~ 313 (418)
+++.+... ...+.+-+++.+.|++.. ......+.-.|-+..-+++|..+ |.++... .-..|. .|+.-
T Consensus 241 i~iVk~~~-keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERA-KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 88888764 567888899999999863 24455555566555566666532 3333221 111111 11111
Q ss_pred ------------------------HhHHHHHHh-ccCChHHHHHHHhcCChH-HHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 014817 314 ------------------------PAGCAEFAE-HALTVPLLVKTILKISDR-ATEYAAGALAALCSASERCQRDAVSAG 367 (418)
Q Consensus 314 ------------------------~~~~~~i~~-~~g~i~~Lv~~l~~~~~~-~~~~A~~~L~~l~~~~~~~~~~~~~~g 367 (418)
..+...+.+ ....+..|.++++..++. .-..|+.=+..+....|+.+..+.+.|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 112222222 123566777778775555 456777777888888999999999999
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+=+.+++++.++ ++++|-.|..+++.+-.
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 999999999777 99999999999887643
No 124
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00019 Score=64.07 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVA-TGNTTCPVTRSPLT 63 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~ 63 (418)
-..+-.||+|++.-..|.+. +|||.||.-||..-.. ..+.+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34456899999999999988 6999999999999654 34789999987653
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.013 Score=57.88 Aligned_cols=239 Identities=14% Similarity=0.089 Sum_probs=159.4
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVL 223 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~ 223 (418)
.+.||.|-.-+..- ++..+...+..|..|-.-. ..+.+. -...++-|...|...+.++|..+-.+|.++.
T Consensus 166 ~~~ipLL~eriy~~-------n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 166 PEFIPLLRERIYVI-------NPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred HHHHHHHHHHHhcC-------CchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 34555555555443 4666777777777553322 133332 3567788889999999999988777777774
Q ss_pred hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcc-cHH-
Q 014817 224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKC-DAE- 301 (418)
Q Consensus 224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~-~~~- 301 (418)
..-. ++.........++.|+.-+.+. ++..+..|+.-|.....-..+..-.--+|++..++.++.+.+.. +.+
T Consensus 237 --~eI~-s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 237 --AEIR-SSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred --HHHh-cCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence 2211 1222213345788999999988 88999888887777766555544445578888888888765543 333
Q ss_pred --HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 302 --RALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 302 --~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
..-..|..+...+...+.+-- ...+..+.+.++++....+-.++.-+..+-...| ..........+..|+.-|+..
T Consensus 312 a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCc
Confidence 233345666666666555332 3567788888888888888888877777776333 233344567888888888666
Q ss_pred CCHHHHHHHHHHHHHHHhhCC
Q 014817 380 CTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 380 ~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++.+...+..++..++...+
T Consensus 390 -sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 390 -SDEVVLLALSLLASICSSSN 409 (675)
T ss_pred -hhHHHHHHHHHHHHHhcCcc
Confidence 89999999999999998754
No 126
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00011 Score=66.31 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=42.4
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
.|+||..-+--||.+.|+|.||.-||+--...+..+|++|+.++....
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999966655788999999987544
No 127
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.30 E-value=0.00021 Score=65.95 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=42.7
Q ss_pred CCCcccCcCccccccC---Ce-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 014817 14 IPYHFRCPISLELMCD---PV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI 68 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~d---Pv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~ 68 (418)
-...|.|||++..|.. -| +.+|||+|+..+|.+.- ....||.|+.+|...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4667999999999954 23 34899999999999984 356799999999876654
No 128
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.30 E-value=8.4e-05 Score=62.71 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=38.7
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
|.|-||++-++.||+..|||.||-.|..+-... ...|-+|++...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 999999999999999999999999987775554 577999987653
No 129
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00015 Score=68.06 Aligned_cols=47 Identities=21% Similarity=0.421 Sum_probs=40.3
Q ss_pred ccCcCccccccCCe---ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPV---TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv---~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
+.|-||++-|++== +++|+|.|=..||..|+.+...+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 68999999987543 679999999999999999866779999987643
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00011 Score=75.19 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=41.9
Q ss_pred CCcccCcCccccccC-----CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCD-----PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~d-----Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
..+-.|+||.+.|.. |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 346789999999999 788999999999999999997 78899999743
No 131
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.019 Score=60.61 Aligned_cols=229 Identities=14% Similarity=0.028 Sum_probs=156.3
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH-hcCCCChhHHHhhcccCCchHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL-VMFPLTETECMEIASDADKITS 199 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L-~~l~~~~~~~~~~i~~~g~i~~ 199 (418)
|.+||.-|.+...-.+=.-..-..-|+.|-++++|.++. .|.+-.-+-+= ..|+.+. .++..+++.++-.-
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-------~ELrpiLVFIWAKILAvD~-SCQ~dLvKe~g~~Y 558 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-------RELRPILVFIWAKILAVDP-SCQADLVKENGYKY 558 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-------HhhhhhHHHHHHHHHhcCc-hhHHHHHhccCcee
Confidence 556666666665444433444455799999999998873 44332222221 2556665 78888888777777
Q ss_pred HHHHhcC-C--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-ccc
Q 014817 200 LSSLLFH-S--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQT 275 (418)
Q Consensus 200 Lv~~L~~-~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n 275 (418)
.+++|.. + +++-|..|+.+|..+. ....-..+.-.+ .+.|..-+..|.++. .+-.+.-.+-+|..|=.+ +++
T Consensus 559 F~~vL~~~~~~~~EqrtmaAFVLAviv--~nf~lGQ~acl~-~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 559 FLQVLDPSQAIPPEQRTMAAFVLAVIV--RNFKLGQKACLN-GNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred EEEEecCcCCCCHHHHHHHHHHHHHHH--cccchhHHHhcc-ccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchh
Confidence 7777766 3 4688889999999995 333333333323 567777778888753 577888889999999755 668
Q ss_pred HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-----HhHHHHH------------Hhc--cCChHHHHHHHhc
Q 014817 276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-----PAGCAEF------------AEH--ALTVPLLVKTILK 336 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-----~~~~~~i------------~~~--~g~i~~Lv~~l~~ 336 (418)
|..=.+.++.+.|+.+|.++-++++..|+-+|..+.++ ++....+ +++ +.+...++.+++.
T Consensus 635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd 714 (1387)
T KOG1517|consen 635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD 714 (1387)
T ss_pred hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc
Confidence 88888999999999999998899999999999888763 2222222 111 0112366666777
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHH
Q 014817 337 ISDRATEYAAGALAALCSASERCQR 361 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~ 361 (418)
+++.++...+-+|..+..+......
T Consensus 715 gsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 715 GSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHhH
Confidence 8888888777778777775544433
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.24 E-value=0.0094 Score=49.91 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=102.3
Q ss_pred hhcccCCchHHHHHHhcCCC------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 189 EIASDADKITSLSSLLFHSS------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 189 ~~i~~~g~i~~Lv~~L~~~~------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
..+.+.||+..|++++.++. .+....+..++.+| ..+......... ..+|...+..+.....+..+...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eL---MeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~s 80 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVEL---MEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRS 80 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHH---HhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHH
Confidence 35667889999999998886 47778888889998 677665555544 569999999998764468899999
Q ss_pred HHHHHHHccccccHHHHHHc-CchHHHHHHhcCCCcccHHHHHHHHHHHh--cCHhHHHHHHh
Q 014817 263 IKALFALCLVKQTRYKAVAA-GAAETLVDRLADFDKCDAERALATVELLC--RIPAGCAEFAE 322 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~--~~~~~~~~i~~ 322 (418)
+..|-++..++......++. =-++.|+..|...+.+++.+++.++-.|- .+++.|+.+.+
T Consensus 81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999998887777765 46899999999999999999999887666 23444444444
No 133
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0016 Score=63.70 Aligned_cols=185 Identities=9% Similarity=-0.001 Sum_probs=130.0
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS 201 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv 201 (418)
..++..|..+++.-...|.-+.++.+++.|+++|+.++ ..+.-.++..+.|+...-+..+..+.+.|.|..|+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-------imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~ 479 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-------IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV 479 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-------ceeeccchhhhhheeeeccchHHHHHHhhHHHHHH
Confidence 34455555665554556667777889999999998763 34445566777888776656788999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccchhhh---hHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-cc--
Q 014817 202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELR---AQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QT-- 275 (418)
Q Consensus 202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n-- 275 (418)
..+.+.+...|.+..|+|+++ ..+.++- +.++ .-+++.++.+.+++ .-.++...+..|+|+.-+. .|
T Consensus 480 ~~v~sKDdaLqans~wvlrHl---myncq~~ekf~~La--kig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~~knEk 552 (743)
T COG5369 480 NLVMSKDDALQANSEWVLRHL---MYNCQKNEKFKFLA--KIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDTSKNEK 552 (743)
T ss_pred HHhhcchhhhhhcchhhhhhh---hhcCcchhhhhhHH--hcCHHHHHHHhcCc--ccccHHHHHHHHHhcccccccccc
Confidence 999988899999999999999 5544433 3333 23689999999988 8899999999999997532 22
Q ss_pred -HHHHHHcC----chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817 276 -RYKAVAAG----AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 276 -~~~i~~~G----~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 320 (418)
+.-+.+.. ....|++.+...++-..+..+.+|.+++.+++....+
T Consensus 553 skdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~ 602 (743)
T COG5369 553 SKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYI 602 (743)
T ss_pred cceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHH
Confidence 11111111 3445666666666655566677777777655554443
No 134
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.19 E-value=0.072 Score=51.18 Aligned_cols=187 Identities=19% Similarity=0.150 Sum_probs=125.1
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
..+..+++.+.+.+ ...+..|...+..+.. .-+++.+..+|.+. ++.++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~--~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~-------~~~vr~~a~~aLg~~~ 102 (335)
T COG1413 43 EAADELLKLLEDED--LLVRLSAAVALGELGS-----------EEAVPLLRELLSDE-------DPRVRDAAADALGELG 102 (335)
T ss_pred hhHHHHHHHHcCCC--HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCC-------CHHHHHHHHHHHHccC
Confidence 45667777776652 2234455555333321 23688899999877 5789999999888765
Q ss_pred CChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh--
Q 014817 182 LTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG-- 258 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~-- 258 (418)
.. ..++.|+..|. +.+..+|..++++|..+ . + ...+.+|+.++.+. ....
T Consensus 103 ~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~---~-~----------~~a~~~l~~~l~~~--~~~~a~ 155 (335)
T COG1413 103 DP-----------EAVPPLVELLENDENEGVRAAAARALGKL---G-D----------ERALDPLLEALQDE--DSGSAA 155 (335)
T ss_pred Ch-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhc---C-c----------hhhhHHHHHHhccc--hhhhhh
Confidence 32 35899999998 58999999999999999 2 1 22478888888876 3222
Q ss_pred ----------hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817 259 ----------LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP 328 (418)
Q Consensus 259 ----------~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~ 328 (418)
+..+..+|.. +-+.-.++.++..+.+.+..++..+..+|..+.... . ...+
T Consensus 156 ~~~~~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~-~~~~ 216 (335)
T COG1413 156 AALDAALLDVRAAAAEALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------V-EAAD 216 (335)
T ss_pred hhccchHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------h-hHHH
Confidence 2222222221 123446788888998888888889999998877654 1 3456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 329 LLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 329 ~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.+...+...+..++..++.+|..+-.
T Consensus 217 ~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 217 LLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 66776777777777777766655443
No 135
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.18 E-value=0.00097 Score=42.25 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=35.2
Q ss_pred HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 314 PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 314 ~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
++++..+.+ .|+++.|++++.++++.+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 347778888 4999999999998899999999999999973
No 136
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00033 Score=64.07 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=42.3
Q ss_pred CCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|+.-.||+|.+--.+|-++. +|++||..||-.+..+ ++.||+|+.+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 344568999999999999885 6999999999999984 899999987654
No 137
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.13 E-value=0.00025 Score=68.61 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHHc----CCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT----GNTTCPVTRSPLTDF 65 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~----~~~~cp~~~~~l~~~ 65 (418)
..+..|-+|.++-.||+..+|.|+|||-||.+|... .+-+||.|...++-+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 345689999999999999999999999999998642 356899999887654
No 138
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.039 Score=56.54 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=163.9
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhh------cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLAR------DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~------~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
..++..+....+....|..|+.+|.+-.. +++..|.. ++.+.++...++ +.+++..|...|.
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~-------d~~i~~aa~~Clv 242 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSP-------DEEIQVAAFQCLV 242 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCC-------cHHHHHHHHHHHH
Confidence 34555555444444457788888876432 12333332 333444444444 5789999999888
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-----------------chhhh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-----------------NLDEI 241 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-----------------~~~g~ 241 (418)
.+..--.+.-..-+.......-+..+++.++++...+...=.+++ ...-+.....+ .-.++
T Consensus 243 kIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic--eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v 320 (859)
T KOG1241|consen 243 KIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC--EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDV 320 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHh
Confidence 765322222222223334556677788999999998888777773 11111111100 11367
Q ss_pred HHHHHHHhhcC-C----CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHH----hcCCCcccHHHHHHHHHHHhc
Q 014817 242 FEGVIDILKNL-S----SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDR----LADFDKCDAERALATVELLCR 312 (418)
Q Consensus 242 i~~Lv~lL~~~-~----~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~l----L~~~~~~~~~~a~~~L~~L~~ 312 (418)
+|.|+++|... . ++-...++|..+|.-++... +-..|++.+.. +.+++-.-++.++.++..+-.
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-------~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-------GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-------cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 88899988652 1 12245666666666665432 22344444444 445555566777777766665
Q ss_pred CHh-H-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH-HHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817 313 IPA-G-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQR-DAVSAGVLTQLLLLVQSDCTDRAKRKAQ 389 (418)
Q Consensus 313 ~~~-~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~A~ 389 (418)
.++ . ...++. +++|.++.++..++..++.-+.|+|..++..-++.+. .....+.++.|+.=| .+ .+++-.+++
T Consensus 394 gp~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~D-ePrva~N~C 469 (859)
T KOG1241|consen 394 GPEPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-ND-EPRVASNVC 469 (859)
T ss_pred CCchhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hh-CchHHHHHH
Confidence 443 3 334443 8899999999988889999999999999986655433 222234455554444 34 689999999
Q ss_pred HHHHHHHhhCC
Q 014817 390 LLLKLLRDSWP 400 (418)
Q Consensus 390 ~~L~~l~~~~~ 400 (418)
|.+-+|++...
T Consensus 470 WAf~~Laea~~ 480 (859)
T KOG1241|consen 470 WAFISLAEAAY 480 (859)
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 139
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.10 E-value=0.0014 Score=50.61 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD 193 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 193 (418)
+..-++.|.+++..++.+++.+++.|++|.+++.-.-++. +|-+++.|+.++++|..+..+++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-----nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-----NPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-----cHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567888999999999999999999999999988765543 8999999999999999998888888763
No 140
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.10 E-value=0.052 Score=55.51 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHH---HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK---AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~---i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 320 (418)
..+..|++. ++.++..|+.++..|+..-.++.. +...|+ .|.+.|....+++.-..+++|..+...-..-...
T Consensus 803 tiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 803 TILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 344556677 788999999999988866554433 333444 3567777778888888888887776422111111
Q ss_pred HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH---HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC---QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
---.+.+|.|..+|++....++++.+..+..||.+.++. |+-| .+---|+++|.++ +...|++|...+.-+++
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkah-kK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAH-KKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Confidence 111378999999999999999999999999999965552 2222 2334466778788 88888888765554443
No 141
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00037 Score=64.65 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=39.6
Q ss_pred CcccCcCccccccCC-------------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDP-------------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
.|-.|-||++.|-.| =-++|||.+--+|+..|.++ ..+||+|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 467899999985443 47899999999999999997 78999999884
No 142
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.21 Score=46.55 Aligned_cols=263 Identities=16% Similarity=0.123 Sum_probs=165.0
Q ss_pred HHHHHHHHHhhhcChhhh--h--HHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCch
Q 014817 122 LSALRRLRGLARDSDKNR--S--LISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKI 197 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~--~--~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 197 (418)
.-|.+.+..+..+.+.|. . ..+.+|+.+.++..+... +.+|...|...|..++... ..-..+..+..+
T Consensus 100 iLackqigcilEdcDtnaVseillvvNaeilklildcIgge-------ddeVAkAAiesikrialfp-aaleaiFeSell 171 (524)
T KOG4413|consen 100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-------DDEVAKAAIESIKRIALFP-AALEAIFESELL 171 (524)
T ss_pred hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-------cHHHHHHHHHHHHHHHhcH-HHHHHhcccccC
Confidence 445666666655544222 1 234689999999999776 4688999999999998877 556666666555
Q ss_pred HHH--HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817 198 TSL--SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 198 ~~L--v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
..+ +.+--..+.-+|......+..+. +...+..... ...|.+..|..=+.... +.-++.++......|+...-.
T Consensus 172 DdlhlrnlaakcndiaRvRVleLIieif--SiSpesanec-kkSGLldlLeaElkGte-DtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 172 DDLHLRNLAAKCNDIARVRVLELIIEIF--SISPESANEC-KKSGLLDLLEAELKGTE-DTLVIANCIELVTELAETEHG 247 (524)
T ss_pred ChHHHhHHHhhhhhHHHHHHHHHHHHHH--hcCHHHHhHh-hhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhh
Confidence 544 22333445666777777788885 4455544444 34688887777776533 778889999999999998888
Q ss_pred HHHHHHcCchHHHHHHhcCCC--cccHHHHH----HHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhcCChHHHHHHHHH
Q 014817 276 RYKAVAAGAAETLVDRLADFD--KCDAERAL----ATVELLCRIPAGCAEFAEH-ALTVPLLVKTILKISDRATEYAAGA 348 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~~~--~~~~~~a~----~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~~~~~~~~~A~~~ 348 (418)
+.-+...|.|+.+-.++...+ +--.-.++ ..+.+++-.+-.-+++++. .-+|....+.+...++..++.|+.+
T Consensus 248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDa 327 (524)
T KOG4413|consen 248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDA 327 (524)
T ss_pred hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence 888889999999999987433 32222232 3333333222122222221 1124445566666899999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCh--HHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 349 LAALCSASERCQRDAVSAGV--LTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 349 L~~l~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+..+.. +.+-.+.+.+.|- .+.++--..+..-..-++.+...|.+++.
T Consensus 328 lGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 328 LGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 988877 5555666666553 44443333332122334455556666554
No 143
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.062 Score=53.93 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH-hcCCCChhHHHhhcccCCch
Q 014817 119 GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL-VMFPLTETECMEIASDADKI 197 (418)
Q Consensus 119 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L-~~l~~~~~~~~~~i~~~g~i 197 (418)
..+..|...+..+..+. .-..+.+.+++..|...+.+-... -+++..-.|..+. .+|. ...++..+
T Consensus 149 ~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~---~~re~~~~a~~~~~~~Lg--------~~~EPyiv 215 (569)
T KOG1242|consen 149 AERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSA---LNREAALLAFEAAQGNLG--------PPFEPYIV 215 (569)
T ss_pred HHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchh---hcHHHHHHHHHHHHHhcC--------CCCCchHH
Confidence 34566777777776543 344466677888888777554210 0222111111111 1222 22366777
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817 198 TSLSSLLFH---SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 198 ~~Lv~~L~~---~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
+.+..+|.+ ....+|..|..+...+. ...... +. .-.++.++.-+... .-....+++..|..++....
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~--~~~~~~----aV-K~llpsll~~l~~~--kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIM--RCLSAY----AV-KLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAP 286 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHH--HhcCcc----hh-hHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhch
Confidence 777777754 35788888777777773 112111 11 23566666655555 57889999999999998888
Q ss_pred cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
......-..++|.+.+.|.+.++++++.+..+|..++.--++.. |- -.+|.|+..+...+..+. .++..|..-..
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~~-e~~~~L~~ttF 361 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYTP-ECLDSLGATTF 361 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccchH-HHHHhhcceee
Confidence 88888889999999999999999999999999999886555544 22 347788888866554433 33333333111
Q ss_pred ---CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 355 ---ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 355 ---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
-++..... .++.|.+-+... +...+++++.++.|++..++
T Consensus 362 V~~V~~psLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 362 VAEVDAPSLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred eeeecchhHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhc
Confidence 11111221 334444444444 67788999999999999875
No 144
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.57 Score=48.67 Aligned_cols=265 Identities=16% Similarity=0.154 Sum_probs=155.0
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccc------c--ccCCChhHHHHHHHHHhcCCCChhHHHhhccc
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN------V--KTASSPELAHESLALLVMFPLTETECMEIASD 193 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 193 (418)
..++.-+.++|+.++++-..+.+ .++.++..|+.-.. + .+-.+|-+|...+..|+.|..++.+..+.+-+
T Consensus 197 ~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D 274 (866)
T KOG1062|consen 197 IAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND 274 (866)
T ss_pred eeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34556666677766666666655 56777777743211 1 11147889999999999888776443322210
Q ss_pred --------------CC---chHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh----------H---
Q 014817 194 --------------AD---KITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI----------F--- 242 (418)
Q Consensus 194 --------------~g---~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~----------i--- 242 (418)
.| ..+.+..++. ..+...|..|+.+|..+. ...+.|-..++. .+. +
T Consensus 275 iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL--~n~d~NirYvaL-n~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 275 ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL--LNRDNNIRYVAL-NMLLRVVQQDPTAVQRH 351 (866)
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh--cCCccceeeeeh-hhHHhhhcCCcHHHHHH
Confidence 01 1122222222 245677888888888885 445555444432 111 1
Q ss_pred -HHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHH-
Q 014817 243 -EGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR--IPAGCA- 318 (418)
Q Consensus 243 -~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~- 318 (418)
..+++.|++. |+..++.|+..++.|.... |...| +..|+..|.+.+...+.....-+..++. .++.+.
T Consensus 352 r~tIleCL~Dp--D~SIkrralELs~~lvn~~-Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~ 423 (866)
T KOG1062|consen 352 RSTILECLKDP--DVSIKRRALELSYALVNES-NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH 423 (866)
T ss_pred HHHHHHHhcCC--cHHHHHHHHHHHHHHhccc-cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 2466778887 8899999999998886444 44443 4567888877788888888877777773 223222
Q ss_pred -----HHHhcc------CChHHHHHHHhcCChHHHHHHHHHHHHHhcCC------HH------------HHH--------
Q 014817 319 -----EFAEHA------LTVPLLVKTILKISDRATEYAAGALAALCSAS------ER------------CQR-------- 361 (418)
Q Consensus 319 -----~i~~~~------g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~------~~------------~~~-------- 361 (418)
++...+ .++..++.++.+......+.+..-|+.-...+ .+ .-.
T Consensus 424 idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~ 503 (866)
T KOG1062|consen 424 IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANE 503 (866)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccc
Confidence 222223 36677777777654444444444444322211 00 000
Q ss_pred ----HHHhcChHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhhC
Q 014817 362 ----DAVSAGVLTQLLLLVQSD-CTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 362 ----~~~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+-+..++..|..++.+. .+..+|..|..+|-.|+..-
T Consensus 504 ~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 504 EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 122245788888888654 35777888888777777653
No 145
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.19 Score=51.31 Aligned_cols=265 Identities=12% Similarity=0.117 Sum_probs=153.3
Q ss_pred HHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHH
Q 014817 109 NQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TEC 187 (418)
Q Consensus 109 ~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~ 187 (418)
+.|.+++....-+.+|+-.|.++-+.+++ .+...+-...++.+|.+. +..|...+...+-.|+... ++.
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~-------~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQ-------HMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCcc-------ccceeeehHHHHHHHHHcCCHHH
Confidence 44555543333345566666666655443 122235667788888765 3445555555555444322 233
Q ss_pred HhhcccCCchHHHHHHhcC-------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817 188 MEIASDADKITSLSSLLFH-------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS 254 (418)
Q Consensus 188 ~~~i~~~g~i~~Lv~~L~~-------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 254 (418)
+..+.. ++..|.++... +.+=.+...+++|.++ ...++....... ..+++.++...+....
T Consensus 223 k~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~---p~~~D~~~r~~l-~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 223 KTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY---PTPEDPSTRARL-NEVLERILNKAQEPPK 296 (938)
T ss_pred hhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC---CCCCCchHHHHH-HHHHHHHHhccccCcc
Confidence 322211 12222222111 2344556667777776 433333222211 2355555555553211
Q ss_pred Chhh-----hHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817 255 YPRG-----LKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP 328 (418)
Q Consensus 255 ~~~~-----~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~ 328 (418)
+..+ +.+.+--.-+|+.+ ++....+.+ ++..|-++|.+....++-.++..+..|+.+....+++..+ ..
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d 371 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QD 371 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HH
Confidence 1111 22222222344444 333333332 5778889999888999999999999999987777777766 67
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCC
Q 014817 329 LLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQD 402 (418)
Q Consensus 329 ~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 402 (418)
.++..|+. .+..+++.|+..|+.+|. .++.+. ++.-|+..|.+. +...|+.-.--...|++-+..+
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~-----IV~elLqYL~tA-d~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQ-----IVAELLQYLETA-DYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhc--hhhHHH-----HHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhcCC
Confidence 88888884 788899999999999997 333444 456677888776 8888887777777777765544
No 146
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.36 Score=49.50 Aligned_cols=250 Identities=10% Similarity=0.104 Sum_probs=139.8
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
..++..|+++-+ ..|-+|+..|.++.-. .+..|. .+|.|+.-|.++ ++.|+-.|+.+++.|+..
T Consensus 147 ~Dv~tLL~sskp--YvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDp-------Dp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 147 DDVFTLLNSSKP--YVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDP-------DPSVVSAAVSVICELARK 211 (877)
T ss_pred HHHHHHHhcCch--HHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCC-------CchHHHHHHHHHHHHHhh
Confidence 344555554422 2345566666555432 222222 356666666665 466777777777777665
Q ss_pred hhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
++.+--. .-|.+-++|... +.=+.........+| +.-+. .++. ..+++|.+++++.. -....-.+
T Consensus 212 nPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aL---tplEP---RLgK--KLieplt~li~sT~-AmSLlYEC 277 (877)
T KOG1059|consen 212 NPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAAL---TPLEP---RLGK--KLIEPITELMESTV-AMSLLYEC 277 (877)
T ss_pred CCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhc---cccCc---hhhh--hhhhHHHHHHHhhH-HHHHHHHH
Confidence 4322222 234555555332 222333344444555 32222 4433 47888888888762 22333334
Q ss_pred HHHHH--HHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCCh
Q 014817 263 IKALF--ALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISD 339 (418)
Q Consensus 263 ~~aL~--~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~ 339 (418)
..++. +++....+....+.. +++.|-.++.+.|++++-..+-++..++. ++...++. -..++++|...+.
T Consensus 278 vNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~DkD~ 350 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDKDE 350 (877)
T ss_pred HHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccCCc
Confidence 43333 333333333333332 56777777788899999999988888884 44333322 2467888888999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh-hCCCHHHHHHHHHHHHHHHh
Q 014817 340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ-SDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~A~~~L~~l~~ 397 (418)
.++-.|+..|+.+.. +++..+ ++..|+..+. +.++.-.-+....++..+++
T Consensus 351 SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred hhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 999999999999886 444444 4566666554 33333333445566666554
No 147
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.15 Score=51.35 Aligned_cols=171 Identities=20% Similarity=0.161 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH
Q 014817 168 ELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID 247 (418)
Q Consensus 168 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~ 247 (418)
.....++..|+.++... .-+-...-+..+|.+.+.|.+..+++|..+..+|..+ ...-+|.+ | .-.+|.|++
T Consensus 269 rtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~---~svidN~d-I---~~~ip~Lld 340 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF---GSVIDNPD-I---QKIIPTLLD 340 (569)
T ss_pred hhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH---HHhhccHH-H---HHHHHHHHH
Confidence 34566777777666544 3344555688999999999999999999999999999 55555555 3 237888998
Q ss_pred HhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc----hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc
Q 014817 248 ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA----AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH 323 (418)
Q Consensus 248 lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~----v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 323 (418)
.+.+++ - -...+...|..-..... +++-. +|.|-+-+...+.++...++.+..|++.--+....+...
T Consensus 341 ~l~dp~--~-~~~e~~~~L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 341 ALADPS--C-YTPECLDSLGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HhcCcc--c-chHHHHHhhcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 888762 1 22233333332221111 12223 344444445567788889999999998644333333211
Q ss_pred -cCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 324 -ALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 324 -~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
...+|.|=..+....+.++..+.++|..+-.
T Consensus 413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 1334444444444678999999999876655
No 148
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.021 Score=58.41 Aligned_cols=208 Identities=12% Similarity=0.042 Sum_probs=128.3
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
+.+|.|+++|...++.....+..+...|..+|..++.. .+..|+. -+++.+-+-+++++..-++.|+-+++.+..+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 67889999996633221111333455565666555432 2333333 4556666677889999999999999999421
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERA 303 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a 303 (418)
.+.+-...++ .+++|.++.++.++ +.-++..+.|+|..++..-. .-......+.++.++.=|.+ .+.+..++
T Consensus 395 -p~~~~Lt~iV--~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~ 468 (859)
T KOG1241|consen 395 -PEPDKLTPIV--IQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV 468 (859)
T ss_pred -CchhhhhHHH--hhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence 1222223332 57999999999977 78888999999999986543 12222335566666666654 57889999
Q ss_pred HHHHHHHhcC--HhHHHH----HHh--ccCChHHHHHHHhc---CChHHHHHHHHHHHHHhcCCHHHHHHH
Q 014817 304 LATVELLCRI--PAGCAE----FAE--HALTVPLLVKTILK---ISDRATEYAAGALAALCSASERCQRDA 363 (418)
Q Consensus 304 ~~~L~~L~~~--~~~~~~----i~~--~~g~i~~Lv~~l~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~ 363 (418)
+|++.+|+.. +..... ... ....|..|++.-.+ .....+..|..+|..|...++.....+
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999931 111111 111 00123333333322 345678899999999988666544443
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.85 E-value=0.0027 Score=43.33 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817 209 IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 209 ~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L 269 (418)
+.+|..|+++|.+++ ....+.-... . ..+++.|+.+|+++ ++.++.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~--~~~~~~~~~~-~-~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA--EGCPELLQPY-L-PELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTT--TTTHHHHHHH-H-HHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHh--cccHHHHHHH-H-HHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 468999999999983 2333333333 2 56999999999988 789999999999876
No 150
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.80 E-value=0.00046 Score=65.21 Aligned_cols=35 Identities=9% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHH
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA 49 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~ 49 (418)
.+++.||||+..|+||++++|||+.||.|-..-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46789999999999999999999999999776543
No 151
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.79 E-value=0.09 Score=52.09 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=114.9
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--ChhhhHHHHHHHHHHcccc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS--YPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~ 273 (418)
....+.+++.+|+...+..+...|..| +.+......+.. ..++..|..+++++.. +.......++++..|-.+.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl---s~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg 159 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL---SLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG 159 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc---cccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence 356678899999999999888888888 777777776655 4579999999999842 2345555566655553332
Q ss_pred ccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817 274 QTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISDRATEYAAGALA 350 (418)
Q Consensus 274 ~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~ 350 (418)
-.....+....|.....+.. ..+..+...|+..|.++..++. .+..+.++ --+..|+..+..++..++..|+..+.
T Consensus 160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~ee-v~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEE-VPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 22222233333344444443 2356788999999999996655 56666664 78899999999999999999988887
Q ss_pred HHhc-CCHHHHHHHHhcC
Q 014817 351 ALCS-ASERCQRDAVSAG 367 (418)
Q Consensus 351 ~l~~-~~~~~~~~~~~~g 367 (418)
.+.. ..+..|.++.+.=
T Consensus 239 al~~~a~~~~R~~~~~~l 256 (713)
T KOG2999|consen 239 ALFRKAPDDKRFEMAKSL 256 (713)
T ss_pred HHHhhCChHHHHHHHHHH
Confidence 7776 2333555555543
No 152
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.78 E-value=0.4 Score=51.01 Aligned_cols=246 Identities=19% Similarity=0.121 Sum_probs=146.8
Q ss_pred HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc----CCC----HHHHH
Q 014817 142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF----HSS----IEVRV 213 (418)
Q Consensus 142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~----~~~----~~~~~ 213 (418)
+.+.||+..|++++.+-.+.+ ...+.....+.+|..++.-. .||+.+.+.|+++.|+..|. .+. .++-+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~--~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFS--RGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hhcCCCHHHHHHHHHhhcccc--CcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 566899999999997643211 13556666677777766655 89999999999999999884 333 67777
Q ss_pred HHHHHHHHHHhcccchhhhhHhh--c-------hhhhHHHHHHHhhcCC--CChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817 214 NSAALIEIVLAGMRSQELRAQIS--N-------LDEIFEGVIDILKNLS--SYPRGLKVGIKALFALCLVKQTRYKAVAA 282 (418)
Q Consensus 214 ~a~~~L~~L~~~s~~~~~~~~i~--~-------~~g~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~~~~n~~~i~~~ 282 (418)
....++..|.+.+..++...... . ...-+..|++.+.+.. .++.+....++.|-+|+..+..+...
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~--- 266 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDA--- 266 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHH---
Confidence 77777777742122111111111 0 1123666777766541 25788999999999999887655443
Q ss_pred CchHHHHHHhc--CCC---cccHHHHHHHHHHHh----cC---HhHHHHHHhccCChHHHHHHHhcCCh--------HHH
Q 014817 283 GAAETLVDRLA--DFD---KCDAERALATVELLC----RI---PAGCAEFAEHALTVPLLVKTILKISD--------RAT 342 (418)
Q Consensus 283 G~v~~Lv~lL~--~~~---~~~~~~a~~~L~~L~----~~---~~~~~~i~~~~g~i~~Lv~~l~~~~~--------~~~ 342 (418)
.|...-..|. .-+ ..--..-+..+..++ .+ ..-|+.+++. |++...+++|...-+ ..+
T Consensus 267 -Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 267 -LVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred -HHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHH
Confidence 1222223332 111 110112233333333 22 3567788885 999999999876322 222
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH-hhCCCHHHHHHHHHHHHHHHh
Q 014817 343 --------EYAAGALAALCSASERCQRDAVSAGVLTQLLLLV-QSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 343 --------~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..++..|.-||.+....+. ++..++++.| ..| +..++..+=..|-.+|..|+.
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~tQ~-~~~~~~l~~l-H~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPTQL-LIAEQLLPLL-HRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHHHH-HHHhhHHHHH-HHhhcCCCccchHHHHHHHHHHHhc
Confidence 4678888888886655444 4667777554 444 333233344455555555554
No 153
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.78 E-value=0.0013 Score=58.56 Aligned_cols=45 Identities=33% Similarity=0.501 Sum_probs=38.2
Q ss_pred cccCcCccccccCCeec-CCCCcccHHHHHHHHHcC-CCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATG-NTTCPVTRSP 61 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~-~~~cp~~~~~ 61 (418)
.++||++......|++. .|||.|+|..|+.++... .-.||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 36999999999999999 599999999999998642 3459997765
No 154
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.78 E-value=0.0029 Score=43.12 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV 222 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L 222 (418)
+.++..|+.+|++++....+.- .-.....++.|+.+|++++.++|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3688999999999886653322 224567899999999999999999999999875
No 155
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0014 Score=61.91 Aligned_cols=53 Identities=21% Similarity=0.509 Sum_probs=43.2
Q ss_pred CcCCCCCCCc------ccCcCccccccC---CeecCCCCcccHHHHHHHHHcCC--CCCCCCCC
Q 014817 8 LDLSVQIPYH------FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGN--TTCPVTRS 60 (418)
Q Consensus 8 ~~~~~~~~~~------~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~cp~~~~ 60 (418)
.+.+.+++.+ |.|||.++.-.| |+.+.|||+.+|.+|.+....|. ..||-|-.
T Consensus 319 LPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 319 LPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred CccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3444555554 699999998887 99999999999999999988776 67999943
No 156
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.39 Score=48.07 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 327 VPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 327 i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
|..+.+.+.-.+..++..|+.+|...+- .++-..+. +...|-+.+... ++++|+.|+.+|+++...
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD~-DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLNDQ-DDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhcc-cHHHHHHHHHHHHhhhhh
Confidence 4444444444788899999999977665 23322222 334455555444 999999999999999854
No 157
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.11 Score=48.26 Aligned_cols=224 Identities=10% Similarity=0.031 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHhcCCCChh----HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhH
Q 014817 167 PELAHESLALLVMFPLTET----ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF 242 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~----~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i 242 (418)
..|.-.++.-+..+..+.+ ..-..++.+|.++.++..+...+.++...|...|..+ +..++.-..|..+ ..+
T Consensus 96 asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri---alfpaaleaiFeS-ell 171 (524)
T KOG4413|consen 96 ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI---ALFPAALEAIFES-ELL 171 (524)
T ss_pred chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH---HhcHHHHHHhccc-ccC
Confidence 4566666665544433332 2244556899999999999999999999999999999 8888888888763 344
Q ss_pred HH--HHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHH
Q 014817 243 EG--VIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCA 318 (418)
Q Consensus 243 ~~--Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~ 318 (418)
.. ++++.... +.-++......+..+.+-.. .....-..|.+..|..-|.. .|.-+..+++.....|+....+++
T Consensus 172 Ddlhlrnlaakc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 172 DDLHLRNLAAKC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred ChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 43 44444445 56778888888888876554 44555568998888888875 566677899999999999999999
Q ss_pred HHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcC-------hHHHHHHHHhhCCCHHHHHHHH
Q 014817 319 EFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAG-------VLTQLLLLVQSDCTDRAKRKAQ 389 (418)
Q Consensus 319 ~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~ll~~~~~~~~~~~A~ 389 (418)
.+.+. |.|..+-.++.. .++--+-.++.....+-. .+....+.++. ++..-.+.+..+ ++...+.|.
T Consensus 250 flaQe-glIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAi 325 (524)
T KOG4413|consen 250 FLAQE-GLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAI 325 (524)
T ss_pred hcchh-hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHH
Confidence 98885 999888888865 444444445544333332 11222222222 233334455556 888999999
Q ss_pred HHHHHHHhhCC
Q 014817 390 LLLKLLRDSWP 400 (418)
Q Consensus 390 ~~L~~l~~~~~ 400 (418)
.++..|..+-+
T Consensus 326 DalGilGSnte 336 (524)
T KOG4413|consen 326 DALGILGSNTE 336 (524)
T ss_pred HHHHhccCCcc
Confidence 99888866543
No 158
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00098 Score=58.44 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHH
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA 49 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~ 49 (418)
.|.+.=+|.+|+++++|||+.+-||.|||.||-+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 4555559999999999999999999999999999863
No 159
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.68 E-value=0.11 Score=46.38 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSL 200 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L 200 (418)
..|+.-|.-+++ +++.|..|.++.+---|-.+|....... ..+..+-.++.+++.|...++ +.-..+...++||..
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r--~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSR--PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCC--chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 456666666665 5788888998876666667775432111 146688899999998876543 445566689999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-------hhhHHHHHH-HhhcCCCChhhhHHHHHHHHHHccc
Q 014817 201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-------DEIFEGVID-ILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-------~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
++.+..|+...+..|+.++..+ -.+|..-..|... .-.+..++. +.+.+ ++...+++.++..+|+.+
T Consensus 174 Lrime~GSelSKtvA~fIlqKI---lldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKI---LLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHH---hhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999 5666544444321 223333333 33344 789999999999999988
Q ss_pred cccHHHH
Q 014817 273 KQTRYKA 279 (418)
Q Consensus 273 ~~n~~~i 279 (418)
...|..+
T Consensus 249 prar~aL 255 (293)
T KOG3036|consen 249 PRARAAL 255 (293)
T ss_pred HHHHHHH
Confidence 8766654
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.35 Score=43.74 Aligned_cols=201 Identities=19% Similarity=0.189 Sum_probs=110.2
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
..+++.|+..|...+. .+-|+..|..+|..+. .. +.++.+-+..+....++++.+..+|..+
T Consensus 66 ~~Av~~l~~vl~desq-----~pmvRhEAaealga~~-~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rl-- 127 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQ-----EPMVRHEAAEALGAIG-DP----------ESLEILTKYIKDPCKEVRETCELAIKRL-- 127 (289)
T ss_pred chhhHHHHHHhccccc-----chHHHHHHHHHHHhhc-ch----------hhHHHHHHHhcCCccccchHHHHHHHHH--
Confidence 4588888888876542 5678888888888765 22 3455566666566667777666666666
Q ss_pred cccchhhhhH-------hhc------hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHH
Q 014817 225 GMRSQELRAQ-------ISN------LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDR 291 (418)
Q Consensus 225 ~s~~~~~~~~-------i~~------~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~l 291 (418)
..-+. -.. +.. ..+-+..|-..|.+.+ .+...+. ++++.|-.... ..+|-.|++-
T Consensus 128 -e~~~~-~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t-~~l~~Ry--~amF~LRn~g~-------EeaI~al~~~ 195 (289)
T KOG0567|consen 128 -EWKDI-IDKIANSSPYISVDPAPPANLSSVHELRAELLDET-KPLFERY--RAMFYLRNIGT-------EEAINALIDG 195 (289)
T ss_pred -HHhhc-cccccccCccccCCCCCccccccHHHHHHHHHhcc-hhHHHHH--hhhhHhhccCc-------HHHHHHHHHh
Confidence 11110 000 000 0111222333222221 1111111 22222211100 0123334444
Q ss_pred hcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChH
Q 014817 292 LADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAGVL 369 (418)
Q Consensus 292 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i 369 (418)
+..++.-.+-.+..++..|-. .-.|+.|.+.|.. .++-++-.|+.+|..|+. ++ .+
T Consensus 196 l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~ 253 (289)
T KOG0567|consen 196 LADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CV 253 (289)
T ss_pred cccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HH
Confidence 444344445556656655432 3568899998876 788899999999999886 33 34
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 370 TQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 370 ~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+.|..++... .+-+++.+...|.++.-.
T Consensus 254 ~vL~e~~~D~-~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 254 EVLKEYLGDE-ERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHHcCCc-HHHHHHHHHHHHHHHHHh
Confidence 5566666555 777888888888776543
No 161
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.6 Score=47.96 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=123.6
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.+++|++.|..+++.++ -.|+..+.+|++.+|.|-..+. |.+..+|.+.. |-=+.-..+...+.|+-
T Consensus 182 ~FprL~EkLeDpDp~V~--SAAV~VICELArKnPknyL~LA-----P~ffkllttSs------NNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVV--SAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSS------NNWVLIKLLKLFAALTP 248 (877)
T ss_pred hHHHHHHhccCCCchHH--HHHHHHHHHHHhhCCccccccc-----HHHHHHHhccC------CCeehHHHHHHHhhccc
Confidence 46789999988766544 7899999999999998875544 88888987664 23355666677777764
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCC-HHHHHHHHHHHH--HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 183 TETECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIE--IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~a~~~L~--~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
-.+..+.. .+++|..++.+.. ..+...++.++. +++ +...+.-..+ .-++..|-.++.+. ++..+
T Consensus 249 lEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s--~g~~d~~asi---qLCvqKLr~fieds--DqNLK 316 (877)
T KOG1059|consen 249 LEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS--SGMSDHSASI---QLCVQKLRIFIEDS--DQNLK 316 (877)
T ss_pred cCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc--cCCCCcHHHH---HHHHHHHhhhhhcC--CccHH
Confidence 33333333 4799999998765 233333333222 442 2322333333 22678888888888 89999
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
--++-|++.+...+.--.+. --+.++++|.+.|..++-.|+.+|..+...
T Consensus 317 YlgLlam~KI~ktHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 317 YLGLLAMSKILKTHPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHhhhCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 99999999998654321111 234578899999999999999999988853
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.064 Score=56.88 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=156.5
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCC-CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFP-LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
+|.++++|-+.. =+..|+..|+.+. .+. =.-..-..-|+.|-++++|++...+.|-..+.+=..+. +
T Consensus 474 LPiVLQVLLSQv---------HRlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKIL--A 541 (1387)
T KOG1517|consen 474 LPIVLQVLLSQV---------HRLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKIL--A 541 (1387)
T ss_pred cchHHHHHHHHH---------HHHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHH--h
Confidence 455566664431 1445666665443 111 11222336799999999999999999988777777774 5
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCC-CcccHHHH
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADF-DKCDAERA 303 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a 303 (418)
.++.....+.. .++-.-.+..|.. ...+++-+..|+-.|..++.+ ...+....+.+.+..-++.|.++ .+-++..+
T Consensus 542 vD~SCQ~dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~ 620 (1387)
T KOG1517|consen 542 VDPSCQADLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL 620 (1387)
T ss_pred cCchhHHHHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence 66555555655 3445555666665 322557888899999999876 45777778899999999999875 45566777
Q ss_pred HHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC----CHHHHHH-----------HHhcCh
Q 014817 304 LATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA----SERCQRD-----------AVSAGV 368 (418)
Q Consensus 304 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~----~~~~~~~-----------~~~~g~ 368 (418)
+-.|..|=.+-+..+......++...|+.+|+...++++..|+-+|..+-.. .++.... +.-+..
T Consensus 621 ~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~ 700 (1387)
T KOG1517|consen 621 CICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL 700 (1387)
T ss_pred HHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence 8788877765444444433359999999999999999999999999887662 2222211 112222
Q ss_pred HH----HHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 369 LT----QLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 369 i~----~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+. .++.+++.+ ++-++...+-.|..+..
T Consensus 701 i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 701 IIKGLMSLLALVSDG-SPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 33 455556444 88888777777766655
No 163
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.62 E-value=0.13 Score=54.26 Aligned_cols=272 Identities=13% Similarity=0.072 Sum_probs=148.2
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh
Q 014817 106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET 185 (418)
Q Consensus 106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 185 (418)
.|++.+.+++.| .|.-|...|..-...+.-+-+.=-+...+..|+++|.+. +.+||..|+.+|+-|+..-.
T Consensus 9 ~LlekmtssDKD--fRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-------ngEVQnlAVKClg~lvsKvk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD--FRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-------NGEVQNLAVKCLGPLVSKVK 79 (1233)
T ss_pred HHHHHccCCCcc--hhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHhhch
Confidence 788999888544 577788777754322211111111235788899999877 68999999999998873321
Q ss_pred HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----CCChhhhHH
Q 014817 186 ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----SSYPRGLKV 261 (418)
Q Consensus 186 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~ 261 (418)
+.+ + ...+..|..-+-++....|.-+.-.|.... +.-......... ..+.+.+...+... .....++-.
T Consensus 80 e~~--l--e~~ve~L~~~~~s~keq~rdissi~Lktvi--~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e 152 (1233)
T KOG1824|consen 80 EDQ--L--ETIVENLCSNMLSGKEQLRDISSIGLKTVI--ANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCE 152 (1233)
T ss_pred HHH--H--HHHHHHHhhhhccchhhhccHHHHHHHHHH--hcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHH
Confidence 111 1 012344444444555555554444333332 222211111111 22344444333322 102234555
Q ss_pred HHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817 262 GIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD 339 (418)
Q Consensus 262 a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~ 339 (418)
++..|..+-+. .+--.. ...+.+..++.-|.+...-++..++.+|..|+..-. +.... +.+..|++-|.. .+.
T Consensus 153 ~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~---~li~~Ll~~L~~~~q~ 227 (1233)
T KOG1824|consen 153 VLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV---ELIEHLLKGLSNRTQM 227 (1233)
T ss_pred HHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH---HHHHHHHhccCCCCch
Confidence 55555544322 111111 345666777777777777888999999999985221 12221 234455555544 344
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH---hhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV---QSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
....--+.+|..+|+... .|.--.-..+++.+.++. +.+ +++.|+....++..+-..-+
T Consensus 228 ~~~rt~Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 228 SATRTYIQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhCh
Confidence 444555666677776111 111111245778888887 455 89999999999988877644
No 164
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.58 E-value=0.26 Score=47.89 Aligned_cols=280 Identities=20% Similarity=0.142 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
++|..+++.|.++++ ...|..++-.|...+. ++.-|.+++..|.+..+++.+....+ +....-.++.+++.++
T Consensus 21 Dev~ylld~l~~~~~-~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~-----d~~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 21 DEVEYLLDGLESSSS-SSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPD-----DDILALATAAILYVLS 93 (361)
T ss_pred HHHHHHHhhcccCCC-ccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccc-----hHHHHHHHHHHHHHHc
Confidence 578999999985443 3346778888887775 57889999999999999999955431 2323333444555555
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHH-HHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc------C-
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSI-EVRVNS-AALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN------L- 252 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a-~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~------~- 252 (418)
.+. ..-..+.+.+.+..+++++..... ...... ..-=.++ + .+. .+.+..+..++.. .
T Consensus 94 ~d~-~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l---s-------k~~--~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 94 RDG-LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL---S-------KVQ--QKSRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred cCC-cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhh---h-------HHH--HHHHHHHHHHHhccccccccC
Confidence 544 344444566777777888771100 000000 0000011 0 000 1111112222211 0
Q ss_pred CCChhhhHHHHHHHHHHcc---------------ccccHHHHHHcCchHHHHHHhcC----C-------C-----cccHH
Q 014817 253 SSYPRGLKVGIKALFALCL---------------VKQTRYKAVAAGAAETLVDRLAD----F-------D-----KCDAE 301 (418)
Q Consensus 253 ~~~~~~~~~a~~aL~~L~~---------------~~~n~~~i~~~G~v~~Lv~lL~~----~-------~-----~~~~~ 301 (418)
......+.-|+.+|-.++. .+..+..+.+.|++..+++++.+ . + -...+
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 0023345556666665530 12246777788999999999852 1 1 12345
Q ss_pred HHHHHHHHHhc-CHhHHHHHHhcc-CChHHHHHHHhc----CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHH
Q 014817 302 RALATVELLCR-IPAGCAEFAEHA-LTVPLLVKTILK----ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLL 375 (418)
Q Consensus 302 ~a~~~L~~L~~-~~~~~~~i~~~~-g~i~~Lv~~l~~----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 375 (418)
.++.+|.+-+. +.++........ +.++.+...+.. ........+++++.|++..+++...+....++...+..+
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i 320 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLI 320 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHH
Confidence 68888888773 344555444432 233333333322 233346789999999999887776666665554444322
Q ss_pred Hhh-------C------CCHHHHHHHHHHHHHHHhhCCC
Q 014817 376 VQS-------D------CTDRAKRKAQLLLKLLRDSWPQ 401 (418)
Q Consensus 376 l~~-------~------~~~~~~~~A~~~L~~l~~~~~~ 401 (418)
... + ..-...--+..+|=||.++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 321 VTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred HHhhcccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 221 0 0122334577778888877654
No 165
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.74 Score=47.89 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=55.2
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAV 364 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 364 (418)
+..|-+.|.+.+.+++--++..|..+...+....+ .| =..++++|+..+..++..|+..++.|.. +...+.
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq--rH---r~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~--- 385 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ--RH---RSTILECLKDPDVSIKRRALELSYALVN-ESNVRV--- 385 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH--HH---HHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHH---
Confidence 34444555555556665666666555543332111 11 1356667777777777888777777776 222233
Q ss_pred hcChHHHHHHHHhhCCCHHHHHH-HHHHHHHHHhhCCC
Q 014817 365 SAGVLTQLLLLVQSDCTDRAKRK-AQLLLKLLRDSWPQ 401 (418)
Q Consensus 365 ~~g~i~~L~~ll~~~~~~~~~~~-A~~~L~~l~~~~~~ 401 (418)
.+..|+.+|.+. ++..|.. |.++...-.++...
T Consensus 386 ---mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 386 ---MVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred ---HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 345666777655 5555544 33333333334443
No 166
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.51 E-value=0.032 Score=55.86 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=107.2
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
.+..++.+|++.++.+|+.|+.+...| ...-.++.....-...=..|.+-|... .+++....+.|+..+.+....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl---~~vlk~c~e~~~l~klg~iLyE~lge~--ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSL---AKVLKACGETKELAKLGNILYENLGED--YPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHH---HHHHHhcchHHHHHHHhHHHHHhcCcc--cHHHHHHHHHHHHHHhhhhcc
Confidence 466677889999999999999999988 333332222211011112355555555 899999999999988766543
Q ss_pred HH-HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817 276 RY-KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA 350 (418)
Q Consensus 276 ~~-~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~ 350 (418)
+. +-=-.|.+|.|..+|.+.+..++++...++..++... ..|+.+... .-|+..|++.+..++.+|...+.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhh
Confidence 31 1123689999999999988999999999999988533 356666553 45777888889999999998888
Q ss_pred HHhc
Q 014817 351 ALCS 354 (418)
Q Consensus 351 ~l~~ 354 (418)
.|+.
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 8776
No 167
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.0024 Score=56.27 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=42.5
Q ss_pred CCcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 014817 15 PYHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI 68 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~ 68 (418)
...|.|||++-.|.+-. +.+|||+|.-+++.+.. ..+|++|+..+...+++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 44699999999998876 55899999999988864 56799999999876653
No 168
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.47 E-value=0.21 Score=44.64 Aligned_cols=181 Identities=16% Similarity=0.068 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC---CChhhhHHHHHHHHHHccccc--cHHHHHHcCc
Q 014817 210 EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS---SYPRGLKVGIKALFALCLVKQ--TRYKAVAAGA 284 (418)
Q Consensus 210 ~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~ 284 (418)
.-..++...|.-+ +.+.+.|..+.. ..+---|-..|...+ ..+-.+-.++++|..|..+++ -...+...++
T Consensus 94 nRVcnaL~LlQcv---ASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 94 NRVCNALALLQCV---ASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred chHHHHHHHHHHH---hcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3345667777777 788888888854 322223444444331 134578899999999998765 3455578999
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccC-------ChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHAL-------TVPLLVKTIL-KISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~ 356 (418)
||..++.+..|+...+.-|..++..+-.++.|-..+..... .+..+|..+. .++.++-.+++++..+|+. +
T Consensus 170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-n 248 (293)
T KOG3036|consen 170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-N 248 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-C
Confidence 99999999999888888899999988888887776655321 2223333333 3899999999999999998 7
Q ss_pred HHHHHHHHhcChHHHH----HHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 357 ERCQRDAVSAGVLTQL----LLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 357 ~~~~~~~~~~g~i~~L----~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
++.|...... .-..| ...+-.+ ++..|+--..++.++..
T Consensus 249 prar~aL~~c-lPd~Lrd~tfs~~l~~-D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 249 PRARAALRSC-LPDQLRDGTFSLLLKD-DPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHHHHHhh-CcchhccchHHHHHhc-ChhHHHHHHHHHHHhcc
Confidence 7777654331 11111 1111133 56666666666666653
No 169
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.44 E-value=0.26 Score=52.05 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=136.6
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.+.+++..++++..+...+.-|+-.+.++-.. +......+.-..+++-++++ ++++...|..+|++++.
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~----~~~s~~~e~~~~iieaf~sp-------~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRR----KDLSPQNELKDTIIEAFNSP-------SEDVKSAASYALGSLAV 886 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccC----CCCCcchhhHHHHHHHcCCC-------hHHHHHHHHHHhhhhhc
Confidence 35667777766544433455566666655432 12222344555677888777 67899999999999987
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
++- ...+|.++..+.+.. .-+..-.-.|......+..+..+..+ ..+...|.+-.+.. ....+...
T Consensus 887 gnl--------~~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd~~~~~v---~~IW~lL~k~cE~~--eegtR~vv 952 (1233)
T KOG1824|consen 887 GNL--------PKYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVDGLKPYV---EKIWALLFKHCECA--EEGTRNVV 952 (1233)
T ss_pred Cch--------HhHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccchhhhhH---HHHHHHHHHhcccc--hhhhHHHH
Confidence 652 356788888776553 22232233333332112222111111 12333333333333 45567778
Q ss_pred HHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHH
Q 014817 263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRAT 342 (418)
Q Consensus 263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~ 342 (418)
+.+|..|+..+.. -.+|.|-..+.++....+..++.+...........-..... ..+..++.++++++..++
T Consensus 953 AECLGkL~l~epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~Vr 1024 (1233)
T KOG1824|consen 953 AECLGKLVLIEPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVR 1024 (1233)
T ss_pred HHHhhhHHhCChH-------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHH
Confidence 8899888766543 25677788888888888888887776544333222222222 457788899999999999
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 014817 343 EYAAGALAALCSASERCQR 361 (418)
Q Consensus 343 ~~A~~~L~~l~~~~~~~~~ 361 (418)
+.|+.++...+++.|....
T Consensus 1025 rvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 1025 RVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred HHHHHHHHHHHccCHhHHH
Confidence 9999999988886555444
No 170
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.033 Score=56.22 Aligned_cols=184 Identities=18% Similarity=0.107 Sum_probs=113.4
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--c--chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGM--R--SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s--~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.....+++|+....++|..|+.+++...... . .+.+..... ..++..+.+.+++. +..++..|+.+|..+-.
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~--sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDR--SLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcC--ceeeeehHHHHhchHHH
Confidence 3677889999999999998877776662112 0 011112221 34677778888877 66677677666655421
Q ss_pred cc---------------------------------------------------ccHHHHHHcCchHHHHHHhcCCCcccH
Q 014817 272 VK---------------------------------------------------QTRYKAVAAGAAETLVDRLADFDKCDA 300 (418)
Q Consensus 272 ~~---------------------------------------------------~n~~~i~~~G~v~~Lv~lL~~~~~~~~ 300 (418)
.. +.-..++..|+-.++|.-|.+.--+++
T Consensus 311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR 390 (823)
T KOG2259|consen 311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR 390 (823)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence 11 112234445555666666655445778
Q ss_pred HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC
Q 014817 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC 380 (418)
Q Consensus 301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 380 (418)
..|+..+..|+.+..+.. . .++.-||.++..+-..++..|+.+|..|+.. ..+++.-++.++.-|...
T Consensus 391 ~AAV~Sl~~La~ssP~FA---~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~- 458 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFA---V--RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR- 458 (823)
T ss_pred HHHHHHHHHHHcCCCCcH---H--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-
Confidence 888888888886433211 1 2356788877778889999999999999873 223334455555666444
Q ss_pred CHHHHHHHHHHHHHH
Q 014817 381 TDRAKRKAQLLLKLL 395 (418)
Q Consensus 381 ~~~~~~~A~~~L~~l 395 (418)
+..+|+....+|.+.
T Consensus 459 s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 459 SVDVREALRELLKNA 473 (823)
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666665555443
No 171
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0031 Score=57.17 Aligned_cols=47 Identities=17% Similarity=0.482 Sum_probs=37.8
Q ss_pred ccCcCcccccc--CC-eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMC--DP-VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 18 ~~Cpi~~~~~~--dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.-|-||+.=+. |- +++||.|.|-+.|+++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 37999987663 22 3679999999999999998656779999988764
No 172
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0022 Score=60.56 Aligned_cols=59 Identities=24% Similarity=0.497 Sum_probs=46.4
Q ss_pred ccCcCccccccCCe-----ecCCCCcccHHHHHHHHHcC-CCCCCCCCCCCCCCCCcccHHHHHH
Q 014817 18 FRCPISLELMCDPV-----TVCTGQTYDRPSIESWVATG-NTTCPVTRSPLTDFTLIPNHTLRRL 76 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv-----~~~~g~~~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n~~L~~~ 76 (418)
-+||||++-+.-|+ .+.|||-|--.||++|+-+. ...||.|...-...++.+..+++..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 37999999999997 55799999999999999532 3459999876666667776666554
No 173
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.26 E-value=0.038 Score=56.52 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=108.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhH--hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQ--ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~--i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
+..+++.|++.++.+|+.|+.++..+ +..-..+.. +....| -.|.+-|... .+++....+.||..+.....
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~l---a~Vlktc~ee~~m~~lG--vvLyEylgee--ypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSL---AKVLKTCGEEKLMGHLG--VVLYEYLGEE--YPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHH---HHHHHhccHHHHHHHhh--HHHHHhcCcc--cHHHHHHHHHHHHHHHHhcc
Confidence 45556788999999999999999999 444444422 212234 2466777776 89999999999988876543
Q ss_pred cHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817 275 TRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIP----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349 (418)
Q Consensus 275 n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L 349 (418)
-.+.. =-.|.+|.|..+|.+.+..+++++..++..++... ..|+.+... .-|+++|++.+..++..|...+
T Consensus 874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 21111 12578999999999999999999999999999532 356666553 4577888888888999998888
Q ss_pred HHHhc
Q 014817 350 AALCS 354 (418)
Q Consensus 350 ~~l~~ 354 (418)
..|++
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 88776
No 174
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.23 E-value=0.072 Score=46.58 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHHHccccccHHHHHH----------------cCchHHHHHHhcC------CCcccHHHHHHHHHHHhcC
Q 014817 256 PRGLKVGIKALFALCLVKQTRYKAVA----------------AGAAETLVDRLAD------FDKCDAERALATVELLCRI 313 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~i~~----------------~G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~ 313 (418)
......++..|.||+..++.+..++. ..++..|++++.. +...-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 44666788889999888877765543 2367778887765 1234457789999999999
Q ss_pred HhHHHHHHhccC-C--hHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh---cChHHHHHHHHh
Q 014817 314 PAGCAEFAEHAL-T--VPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS---AGVLTQLLLLVQ 377 (418)
Q Consensus 314 ~~~~~~i~~~~g-~--i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~ll~ 377 (418)
+++|+.+..... . +..|+..+.+.|..-+.-++++|.|+|...... ..+.. .++++.|+.-|.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 999999987532 3 556666666678888899999999999844444 33443 367777766664
No 175
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.41 Score=51.75 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhccc--CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASD--ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~ 243 (418)
+..+|..+-.+|..+.... .......+ ......|..-+++.+..++...+.+|..|.. ....+....+. ..|+
T Consensus 667 ~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~-~~~~e~~~~i~---k~I~ 741 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK-LLSAEHCDLIP---KLIP 741 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hccHHHHHHHH---HHHH
Confidence 5788999999999887663 22222221 2334555566666667777777777777742 12235555553 2455
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC------chHHHHHHhcCC--CcccHHHH--HHHHHHHhcC
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG------AAETLVDRLADF--DKCDAERA--LATVELLCRI 313 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G------~v~~Lv~lL~~~--~~~~~~~a--~~~L~~L~~~ 313 (418)
.++-.++.. +...++.|..+|..+.. .....+.| .|...+..+..+ .......+ +-++..+...
T Consensus 742 EvIL~~Ke~--n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSLKEV--NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHhcccc--cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 544444665 88999999999999973 12222222 555666666543 12222222 3333333321
Q ss_pred H-hH-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817 314 P-AG-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391 (418)
Q Consensus 314 ~-~~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 391 (418)
. .. -...+. +.+..+...|...++.+...|++.+..++..-|+....-...-+++.++.+++.+ +...|.+...+
T Consensus 816 ~~~~ld~~~l~--~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLE--KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 1 11 011111 3445555666678999999999999998886666555444555788888877666 88888888888
Q ss_pred HHHHHhh
Q 014817 392 LKLLRDS 398 (418)
Q Consensus 392 L~~l~~~ 398 (418)
|..|.+.
T Consensus 893 lekLirk 899 (1176)
T KOG1248|consen 893 LEKLIRK 899 (1176)
T ss_pred HHHHHHH
Confidence 8887764
No 176
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.15 E-value=0.21 Score=50.34 Aligned_cols=260 Identities=13% Similarity=0.073 Sum_probs=144.3
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh--hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSD--KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
-|..++..|++..++. +.+|++....+++--. .--+.+...|.| |.+-|... .+++.-..+.+++.+
T Consensus 605 ivStiL~~L~~k~p~v--R~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-------ypEvLgsil~Ai~~I 673 (975)
T COG5181 605 IVSTILKLLRSKPPDV--RIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-------YPEVLGSILKAICSI 673 (975)
T ss_pred HHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-------cHHHHHHHHHHHHHH
Confidence 3566788888776654 4677777776654211 011223444432 44555444 578887777777655
Q ss_pred CCChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 181 PLTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 181 ~~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
.... ..+ -+---.|.+|.|..+|++....+..+....+..++ ..........+.--+--.|+++|.+- +.+.+
T Consensus 674 ~sv~-~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~---~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiR 747 (975)
T COG5181 674 YSVH-RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTIC---MNSPEYIGVREWMRICFELVDSLKSW--NKEIR 747 (975)
T ss_pred hhhh-cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHH---hcCcccCCHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 4322 111 11124689999999999999999999999998884 33222111111111233578888888 89999
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc---
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--- 336 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--- 336 (418)
.+|..++.-++..-.- +.++..|+.-|... +-+...+..+. ..++....+...++..|.+
T Consensus 748 R~A~~tfG~Is~aiGP------qdvL~~LlnnLkvq--eRq~Rvctsva---------I~iVae~cgpfsVlP~lm~dY~ 810 (975)
T COG5181 748 RNATETFGCISRAIGP------QDVLDILLNNLKVQ--ERQQRVCTSVA---------ISIVAEYCGPFSVLPTLMSDYE 810 (975)
T ss_pred HhhhhhhhhHHhhcCH------HHHHHHHHhcchHH--HHHhhhhhhhh---------hhhhHhhcCchhhHHHHHhccc
Confidence 9999998877532211 22333344333321 11112222211 1122212333344444433
Q ss_pred -CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 337 -ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 -~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+..+|.-.++++..+..+-.+....- =.-+.+.|-+.|... ++.-|.-|..+++.|.-+
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~~s~dY-vy~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQASLDY-VYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 677788887777766665222211110 012334444445444 888899999999988765
No 177
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.01 E-value=0.5 Score=43.96 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=141.1
Q ss_pred hHHHHHHHHHhhhcChhhhhHH-hhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc-CCchH
Q 014817 121 RLSALRRLRGLARDSDKNRSLI-SSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD-ADKIT 198 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~ 198 (418)
+.-|+..+.++.-. ++.|..+ .+...-..++.+++.... ..++|-+.+-++..|..+. ...+.+-+ -+.+.
T Consensus 166 rlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg-----~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~ 238 (432)
T COG5231 166 RLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVG-----VKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 45566777777643 4455543 334444567777766542 5788999999888888877 55544443 35677
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC-CCChhhhHHHHHHHHHH-------
Q 014817 199 SLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL-SSYPRGLKVGIKALFAL------- 269 (418)
Q Consensus 199 ~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~~a~~aL~~L------- 269 (418)
.|+++.+.. ...+-+.+++++.|+++. .....-..... .|-+.+-+++|... -++++.+...-..=..|
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 888888765 356667788999999521 12222222222 34455666666543 22343333222211111
Q ss_pred cc------------------------ccccHHHHHHc--CchHHHHHHhcCCCcc-cHHHHHHHHHHHh-cCHhHHHHHH
Q 014817 270 CL------------------------VKQTRYKAVAA--GAAETLVDRLADFDKC-DAERALATVELLC-RIPAGCAEFA 321 (418)
Q Consensus 270 ~~------------------------~~~n~~~i~~~--G~v~~Lv~lL~~~~~~-~~~~a~~~L~~L~-~~~~~~~~i~ 321 (418)
+. .++|..++.+. ..+..|.++++...+. ...-|+.=+..+. ..|+++.-+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 10 12366666653 4788899999877665 3455666666665 5788888888
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 014817 322 EHALTVPLLVKTILKISDRATEYAAGALAALC 353 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~ 353 (418)
.. |+=..++.+|.+++++++-+|+.++..+-
T Consensus 397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 85 99999999999999999999999987754
No 178
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.13 Score=53.03 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=139.2
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
..+.+.++..+ .+.|..|+-.+.++-. .+.+...+.|.++.|-+++.+. ++.|..+|+.+|..+...+
T Consensus 124 ~Pl~~~l~d~~--~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~-------~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 124 DPLLKCLKDDD--PYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS-------NPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHhccCCC--hhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC-------CchHHHHHHHHHHHHHHhC
Confidence 34555555443 3345556666666543 3556677799999999999855 6899999999999876544
Q ss_pred hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
.+........-.+..++..| +...-..-+.+|-.++ ..-. +.. ......++.+...|.+. ++.+.-.+..
T Consensus 192 ~~~~~~~l~~~~~~~lL~al---~ec~EW~qi~IL~~l~---~y~p-~d~-~ea~~i~~r~~p~Lqh~--n~avvlsavK 261 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEAL---NECTEWGQIFILDCLA---EYVP-KDS-REAEDICERLTPRLQHA--NSAVVLSAVK 261 (734)
T ss_pred CCCCcccccHHHHHHHHHHH---HHhhhhhHHHHHHHHH---hcCC-CCc-hhHHHHHHHhhhhhccC--CcceEeehHH
Confidence 22111111112223333333 3333333444455552 1111 001 11123555555666665 5556666666
Q ss_pred HHHHHccccccHHHHHHcCchHHHHHHhcCCC----------------------------------c-ccHHHHHHHHHH
Q 014817 265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFD----------------------------------K-CDAERALATVEL 309 (418)
Q Consensus 265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~----------------------------------~-~~~~~a~~~L~~ 309 (418)
++.++..........+..-.-++|+.++.... + -++..=+.++..
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~ 341 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIE 341 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence 66665543332222232333344444443322 1 223333444444
Q ss_pred HhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817 310 LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQ 389 (418)
Q Consensus 310 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~ 389 (418)
|+... +-+++.. -+.+.-...+...-..|++++.+++..-++. .+.+..|++++... -+-+...+.
T Consensus 342 la~~~-nl~qvl~------El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~ 407 (734)
T KOG1061|consen 342 LANDA-NLAQVLA------ELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAI 407 (734)
T ss_pred HhhHh-HHHHHHH------HHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehh
Confidence 44321 1111221 2333333357777788999999887622111 77899999999766 556666778
Q ss_pred HHHHHHHhhCCCC
Q 014817 390 LLLKLLRDSWPQD 402 (418)
Q Consensus 390 ~~L~~l~~~~~~~ 402 (418)
.+++.+-+.+++.
T Consensus 408 vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 408 VVIRDILRKYPNK 420 (734)
T ss_pred HHHHhhhhcCCCc
Confidence 8888888887754
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.97 E-value=0.0045 Score=59.21 Aligned_cols=51 Identities=22% Similarity=0.448 Sum_probs=39.4
Q ss_pred CCCCCCCcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 10 LSVQIPYHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.++.+.+.-+||+|++=|-+-+ ++.|.|+|--.|+.+|+. .+||+|+--..
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 3345555569999999998887 557999999999999976 45888764433
No 180
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.95 E-value=0.087 Score=46.08 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=80.8
Q ss_pred cCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc---------------CChHHHHHHHhc------CChHHHHHHHHHHHH
Q 014817 293 ADFDKCDAERALATVELLCRIPAGCAEFAEHA---------------LTVPLLVKTILK------ISDRATEYAAGALAA 351 (418)
Q Consensus 293 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~---------------g~i~~Lv~~l~~------~~~~~~~~A~~~L~~ 351 (418)
..++......++.+|+||+..+++...+.... ..+..|+..+.. ....-..+.+.++.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34445667889999999999999988665531 246677777755 233445789999999
Q ss_pred HhcCCHHHHHHHHhc--Ch--HHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 352 LCSASERCQRDAVSA--GV--LTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 352 l~~~~~~~~~~~~~~--g~--i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++. -++.|+.+.+. +. +.+|+-++++. +...|+-++.+|+|++-..+
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~ 135 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD 135 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh
Confidence 998 78888888764 44 77888888777 88999999999999987544
No 181
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.87 E-value=2.2 Score=45.53 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=133.4
Q ss_pred HHHHHHHHHhhcCCC--chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccc-cCCChhHHHHHHHHHh
Q 014817 102 SLVRTLLNQASSESN--TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVK-TASSPELAHESLALLV 178 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~v~~~a~~~L~ 178 (418)
+.+..++..+.+... ........+..|...|-.-+.||+.+.+.|+++.|+..|...-... .....++.+.-+.++.
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 345566666654221 1122344444444445456899999999999999999985321100 0012566677776666
Q ss_pred cCCCChhHH--Hh--hcccC--------CchHHHHHHhcCC----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhH
Q 014817 179 MFPLTETEC--ME--IASDA--------DKITSLSSLLFHS----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF 242 (418)
Q Consensus 179 ~l~~~~~~~--~~--~i~~~--------g~i~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i 242 (418)
.+....... .. ..... .-+..|++.+.+. ++.+....+++|-+|+ ..+++.-..++. -.
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~---~F 271 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVE---HF 271 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHH---HH
Confidence 554322111 00 10111 2266666666553 5888888999999994 333332223321 22
Q ss_pred HHHHHHhhcCCCChhhhHHHHHHHHHHcc----c---cccHHHHHHcCchHHHHHHhcCCC----------------ccc
Q 014817 243 EGVIDILKNLSSYPRGLKVGIKALFALCL----V---KQTRYKAVAAGAAETLVDRLADFD----------------KCD 299 (418)
Q Consensus 243 ~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~----~---~~n~~~i~~~G~v~~Lv~lL~~~~----------------~~~ 299 (418)
.+.+++=+-+.....--..-+..+..++. + ..-|..+++.|++...+++|...- ...
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 33333221110011111222444444432 2 235788899999999999886321 122
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhc
Q 014817 300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCS 354 (418)
Q Consensus 300 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~ 354 (418)
...++.+|.-|+.+....+.+... +++ .++..|.. ++..+-..|=.+|-.|+.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~-~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAE-QLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHh-hHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 345888999999776655555553 666 55555654 345555566666666665
No 182
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.84 E-value=0.41 Score=50.15 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=47.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
+..+.+=+++.++.+|..|.+++..+ .. .+.+ ..+++++.+++.++ ++.+++.|+-++.++-.-+ +
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l----~~---~el~---~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld--~ 159 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLL----RV---KELL---GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLD--K 159 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhc----Ch---HHHH---HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcC--H
Confidence 34444444555555555555555444 11 1111 12445555555555 4555555555555553322 2
Q ss_pred HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
....+.|.+..+..++.+.++.+..+|+.+|..+-
T Consensus 160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 160 DLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 22334455555555555555555555555555443
No 183
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.75 E-value=0.029 Score=48.92 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHHcCchHHHHHHhcC---------CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHH
Q 014817 276 RYKAVAAGAAETLVDRLAD---------FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAA 346 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~ 346 (418)
...+++.||+..|+.+|.. .+......++.+|..|..+..|...+..+.+++..++..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 5677889999999998862 1235667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 014817 347 GALAALC 353 (418)
Q Consensus 347 ~~L~~l~ 353 (418)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 184
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.17 Score=52.15 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
++.++..|+..+..+..+. ... -...+|.+.++++++.+|..++..+.++ .. ...... ...|.++.|
T Consensus 99 np~iR~lAlrtm~~l~v~~--i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl---~~--~~~~~~-~~~gl~~~L 165 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRVDK--ITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKL---FD--IDPDLV-EDSGLVDAL 165 (734)
T ss_pred CHHHHHHHhhceeeEeehH--HHH-----HHHHHHHHhccCCChhHHHHHHHHHHHh---hc--CChhhc-cccchhHHH
Confidence 7888888888777665433 122 3468999999999999999988888888 32 223333 447999999
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHcccccc--HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHh
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLVKQT--RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAE 322 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n--~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~ 322 (418)
-.++.+. ++.+..+|+.+|..+...+.+ ...+ ..-.+..++..|...+.--+...+..|.+=.-.++ ....+
T Consensus 166 ~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i-- 240 (734)
T KOG1061|consen 166 KDLLSDS--NPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDI-- 240 (734)
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHH--
Confidence 9999976 899999999999999866543 1111 11123333444433222222233333332222222 22233
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 323 HALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
+..+...+.+.+..+.-.+.+++..+...-+. .....-..+.++|+.++.+.
T Consensus 241 ----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~ 292 (734)
T KOG1061|consen 241 ----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSE 292 (734)
T ss_pred ----HHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeeccc
Confidence 33455566667777777888888777763323 33344455666777777555
No 185
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.25 Score=51.24 Aligned_cols=199 Identities=16% Similarity=0.050 Sum_probs=138.0
Q ss_pred HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHH-HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 186 ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE-IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 186 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~-~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
.-+...++.|+...|+++...+.++.+..+..+|. .+ +. ... ....+++++...+.+.. .......++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i---~f-~~~-----~~~~v~~~~~s~~~~d~-~~~en~E~L~ 564 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI---DF-PGE-----RSYEVVKPLDSALHNDE-KGLENFEALE 564 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc---CC-CCC-----chhhhhhhhcchhhhhH-HHHHHHHHHH
Confidence 45777789999999999999999998888888877 33 11 111 11346777777777652 2334557899
Q ss_pred HHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHH-HHHhccCChHHHHHHHhcCChHHH
Q 014817 265 ALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA-EFAEHALTVPLLVKTILKISDRAT 342 (418)
Q Consensus 265 aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~~l~~~~~~~~ 342 (418)
++.||++.+ ..|.+++..-+++.+=.++...++..+..++..+.||.-++-.-+ .+++....++.....+........
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 999999775 477888887777777777777788889999999999998776444 455534567777776666666666
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 343 EYAAGALAALCSASERCQR-DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 343 ~~A~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
..+++++..|+.-+..+.. ...-......+..++.+. ++.+|.......-++
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNL 697 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhH
Confidence 6777776666664444444 222345667777888777 777776655555443
No 186
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.31 Score=50.53 Aligned_cols=242 Identities=12% Similarity=0.057 Sum_probs=151.7
Q ss_pred hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh-cCCCChhHHHhhcccCCchHHHHHHhcCCC-HHHHHH
Q 014817 137 KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV-MFPLTETECMEIASDADKITSLSSLLFHSS-IEVRVN 214 (418)
Q Consensus 137 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~ 214 (418)
.-+...++-|+...|+++.... .++....+..+|. .+...... ....++++...+.... .--...
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q-------~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E 561 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQ-------FEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFE 561 (748)
T ss_pred HhcCccccccHHHHHHHHHHHh-------chHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHH
Confidence 3444567789999999988766 3566666666666 33332211 2245566666554432 222345
Q ss_pred HHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHH-cCchHHHHHHh
Q 014817 215 SAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVA-AGAAETLVDRL 292 (418)
Q Consensus 215 a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~-~G~v~~Lv~lL 292 (418)
+..++.||+ +.++..|..|.. .-+++.+-.++-.. ++..+.+++..+.||..+.. ....+++ ...++.....+
T Consensus 562 ~L~altnLa--s~s~s~r~~i~k-e~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 562 ALEALTNLA--SISESDRQKILK-EKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL 636 (748)
T ss_pred HHHHhhccc--CcchhhHHHHHH-HhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence 788999996 566677777754 34556555555555 78999999999999998776 4444555 56677766666
Q ss_pred cCCCcccHHHHHHHHHHHhcCHhH-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHH
Q 014817 293 ADFDKCDAERALATVELLCRIPAG-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQ 371 (418)
Q Consensus 293 ~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~ 371 (418)
...+....-.+++++..++...++ ...+.+.......++..+.+.+..+|-..+....|+.....+....+.....++.
T Consensus 637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 655555555556666644433322 2213333356778888889999999999999999977766677777766666666
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 372 LLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 372 L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+..+-.-. -...++.+..-|...-+
T Consensus 717 l~~~~~~~-~a~~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 717 LSGLQKLN-RAPKREDAAPCLSAAEE 741 (748)
T ss_pred HHHHHHhh-hhhhhhhhhhHHHHHHH
Confidence 54433222 33444444444444333
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.58 E-value=0.7 Score=42.01 Aligned_cols=221 Identities=15% Similarity=0.044 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHH-------hcCCC--H---HHHHHHHHHHHHHHhcccchhhh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSL-------LFHSS--I---EVRVNSAALIEIVLAGMRSQELR 232 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~-------L~~~~--~---~~~~~a~~~L~~L~~~s~~~~~~ 232 (418)
+++-++.|+.-|..--..-++....+. ..|.+..|++= |...+ . .-..+|...|..+ +.+++.|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~v---Ashpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCV---ASHPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHH---HH-TTTH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHH---HcChHHH
Confidence 466788888877754333323444444 45777666542 22221 1 3334566666677 7799999
Q ss_pred hHhhchhhhHHHHHHHhhcCCCC---hhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 233 AQISNLDEIFEGVIDILKNLSSY---PRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 233 ~~i~~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
..+.. ....--|...|+....+ +-.+-.+++++..|...++ ...-+.+...+|..++.|..|+.-.+.-|..++
T Consensus 85 ~~Fl~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence 88865 44544566666654211 3467789999999997553 455567889999999999988877788899999
Q ss_pred HHHhcCHhHHHHHHhccC-------ChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh-
Q 014817 308 ELLCRIPAGCAEFAEHAL-------TVPLLVKTI-LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS- 378 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~~~g-------~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~- 378 (418)
..+-.++.|-+.+...+. ++..+|..+ ...+++.-++.+++-..|+. +++.+..+.+ .+|. .|.+
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP~---~Lrd~ 237 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLPD---QLRDG 237 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS-G---GGTSS
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCcH---HHhcH
Confidence 999888888777655322 333444433 33788999999999999998 6666665432 2221 2211
Q ss_pred ------CCCHHHHHHHHHHHHHHH
Q 014817 379 ------DCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 379 ------~~~~~~~~~A~~~L~~l~ 396 (418)
..++..|+.-..++.|+.
T Consensus 238 ~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 238 TFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp TTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 126777777777776653
No 188
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.2 Score=44.01 Aligned_cols=251 Identities=13% Similarity=0.115 Sum_probs=141.1
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH-HHHHHhcCCCChhHHHhhcccCCchHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE-SLALLVMFPLTETECMEIASDADKITS 199 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~-a~~~L~~l~~~~~~~~~~i~~~g~i~~ 199 (418)
..-|+..+.++-. .++++.+.. -+-++|.+++. ..-|+.. |+..|+.+-.+ -..+-..++...
T Consensus 128 v~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~-----~~~vkqkaALclL~L~r~s----pDl~~~~~W~~r 191 (938)
T KOG1077|consen 128 VCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSS-----MDYVKQKAALCLLRLFRKS----PDLVNPGEWAQR 191 (938)
T ss_pred HHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcc-----hHHHHHHHHHHHHHHHhcC----ccccChhhHHHH
Confidence 3456666666632 344444331 22366666642 2334444 44444443322 223334578999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC-----------CChhhhHHHHHHHHH
Q 014817 200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS-----------SYPRGLKVGIKALFA 268 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----------~~~~~~~~a~~aL~~ 268 (418)
++.+|...+..+...++..+-.|+. -..++++-.+.. ++..|..+..... ..|=.+..++++|.+
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk-~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~ 267 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVK-KNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI 267 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHH-cCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence 9999999888887888888888852 234444444422 4444444443211 034467777888877
Q ss_pred Hccccc--cHHHHHHcCchHHHHHHhcCC--CcccHH----H-HHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817 269 LCLVKQ--TRYKAVAAGAAETLVDRLADF--DKCDAE----R-ALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 269 L~~~~~--n~~~i~~~G~v~~Lv~lL~~~--~~~~~~----~-a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
.-...+ .+.++. .+++.++...+.+ ...+++ + .+--.-+|+ ..+...+.+.. ++..|-+.|.+..
T Consensus 268 ~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~---~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 268 YPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR---AVNQLGQFLSHRE 342 (938)
T ss_pred CCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHHhhccc
Confidence 744443 333332 2344444444422 112221 1 111112233 22333344433 3667778888888
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
..++--|+..+..||. ++.....+... ...++..|....+..+|++|..+|-.++...
T Consensus 343 ~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 343 TNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred ccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 8888888888888887 33334444434 6777788875668999999999999998754
No 189
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.33 Score=49.36 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=122.7
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-- 273 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-- 273 (418)
++..|..+...++..++.+|+..|..| +..- ++. .-.....++++.+. +..++.+|+.+++-.+...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L---~eg~----kL~--~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLAL---SEGF----KLS--KACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhh---cccc----ccc--HHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCC
Confidence 344477888888999999999999888 4311 221 22556678888887 7899999987777654321
Q ss_pred -----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc------------------------------------
Q 014817 274 -----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR------------------------------------ 312 (418)
Q Consensus 274 -----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~------------------------------------ 312 (418)
.+..++.++ ++..+-+.+.+.+-.++..|..+|..+-.
T Consensus 268 ~~e~e~~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 268 PLERESEEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred cccchhhhhhhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 133344333 55666666666555555444444432221
Q ss_pred C---------------HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817 313 I---------------PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ 377 (418)
Q Consensus 313 ~---------------~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 377 (418)
+ +++-..++.+ |+--.+|.-+..+--++++.|+..+..|+..+|..... .+..|++.+.
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~s-GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfN 420 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPS-GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFN 420 (823)
T ss_pred cccCccccccCchhhccccccccccc-cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhc
Confidence 0 0111123332 55566777676667789999999999999977777665 6788888886
Q ss_pred hCCCHHHHHHHHHHHHHHHhh
Q 014817 378 SDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 378 ~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.. .+.+|.+|...|..++.+
T Consensus 421 DE-~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 421 DE-IEVVRLKAIFALTMISVH 440 (823)
T ss_pred cH-HHHHHHHHHHHHHHHHHH
Confidence 66 889999999999999887
No 190
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.40 E-value=0.2 Score=38.57 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=49.8
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh--cChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 325 LTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS--AGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 325 g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
-.+++++..+...+.+++..|+.+|+||++. .+..+.. ..++..|..++... ++++|..|.-+-+.|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHh
Confidence 4688899988889999999999999999972 2333333 45777777777555 888887776665554
No 191
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.33 E-value=0.16 Score=39.08 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
..++++++..+.+. +..++..|+.+|+|++..-.. .++. ..+++.|.+++.+.++.++ .++..|-+|-
T Consensus 26 ~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVR-SAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHh
Confidence 34899999999998 899999999999999865433 3332 4678888888888777754 4446666553
No 192
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.30 E-value=0.014 Score=38.15 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=22.0
Q ss_pred CcCcccccc--CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 20 CPISLELMC--DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 20 Cpi~~~~~~--dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
||+|-+.|. |--.. +||+..||.|..+..+.+...||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788888872 22233 58999999998888876688899999875
No 193
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.22 E-value=0.02 Score=38.09 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=24.4
Q ss_pred ccCcCccccccCCeec-CCCCc--ccHHHHHH-HHHcCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTV-CTGQT--YDRPSIES-WVATGNTTCPVTRSP 61 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~-~~~~~~~~cp~~~~~ 61 (418)
+.|||+...|+-|+-. .|.|. |+-...-+ ....+.-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999977 58876 77644444 344445679999764
No 194
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.019 Score=50.26 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=42.6
Q ss_pred ccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCC--CCCCCCCCCCcccHHH
Q 014817 18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPV--TRSPLTDFTLIPNHTL 73 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~--~~~~l~~~~l~~n~~L 73 (418)
.+|||+.+...-|++. .|+|.|++..|.+++.. ....||. |.+......+..++-|
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 4999999999999988 59999999999999873 3456887 5454544555544433
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.15 E-value=3 Score=39.53 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=112.8
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc---
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV--- 272 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~--- 272 (418)
+...+..|...+...|+.+...|.++. ...-....+.. ..-++..+.+.++.+ ..+.+.-|++++.-|+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l---~~~~~~d~v~~~~~tL~~~~~k~lkkg--~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRAL---SSRYLPDFVEDRRETLLDALLKSLKKG--KSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhhhcCC
Confidence 444555666677899999999999884 22222233321 234788888889888 556677788888877755
Q ss_pred cccHHHHHHcCchHHHHHHhcCCCcc--cHHHHHHHHHHHh---cC-HhHHHHHHhccCChHHHHHHHhc----------
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFDKC--DAERALATVELLC---RI-PAGCAEFAEHALTVPLLVKTILK---------- 336 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~--~~~~a~~~L~~L~---~~-~~~~~~i~~~~g~i~~Lv~~l~~---------- 336 (418)
......+.+ ...|.|.+.+.++... .+..++.+|..++ .. .+......+.-..+-.+. .+..
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~-~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS-ILKSDGNAPVVAAE 197 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH-hcCcCCCcccccCC
Confidence 244555544 4788899988866543 3344444554443 22 222221111100011111 1111
Q ss_pred CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 337 ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.++.+...|+.+-.-|.. -+...... .-...++.|..+|++. +..+|-.|...|..|.+...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSD-DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 123455555555333332 22222222 2245689999999888 99999999999999877654
No 196
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.14 E-value=0.57 Score=42.61 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITS 199 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~ 199 (418)
...|+.-+.-+++ +++.|..+.++.+.--|..+|....... ..+.++-.++.+++.|...+ .+.-..+.+.+.+|.
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r--~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTR--PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SH--HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhcccccc--ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 3567777777776 6889999999998877888886543200 02457778888888776543 345666678999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchh-------hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLD-------EIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~-------g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
.++.|..|+.-.|..|+.++..+ -.+|..-..+.... .++..++.-+.... ++...++..++-..|+.+
T Consensus 144 cLr~me~GselSKtvAtfIlqKI---L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKI---LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHH---HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHH---HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC
Confidence 99999999999999999999999 56665555554322 23333443333332 789999999999999999
Q ss_pred cccHHHHH
Q 014817 273 KQTRYKAV 280 (418)
Q Consensus 273 ~~n~~~i~ 280 (418)
...+..+.
T Consensus 220 prar~aL~ 227 (262)
T PF04078_consen 220 PRAREALR 227 (262)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 98887764
No 197
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.11 E-value=1.1 Score=47.19 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=76.7
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 320 (418)
+++.+.+=+++. ++..+..|+++|..| +..-+-..+++++.+++.++++.++..|+-++..+-+- .+...
T Consensus 93 avNti~kDl~d~--N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~ 162 (757)
T COG5096 93 AVNTIQKDLQDP--NEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLY 162 (757)
T ss_pred HHHHHHhhccCC--CHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhh
Confidence 456666666777 888999888888877 22223334788888999988888888888888776632 23344
Q ss_pred HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 321 AEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.+ .|.+..+..++...++.+..+|+.+|..+..
T Consensus 163 ~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 163 HE-LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 44 5888888888888999999999999888765
No 198
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.0067 Score=54.09 Aligned_cols=54 Identities=17% Similarity=0.384 Sum_probs=42.1
Q ss_pred cccCcCccccccCCe----------ecCCCCcccHHHHHHHHHcC-CCCCCCCCCCCCCCCCccc
Q 014817 17 HFRCPISLELMCDPV----------TVCTGQTYDRPSIESWVATG-NTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv----------~~~~g~~~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n 70 (418)
+=.|-+|++-+-+-+ .++|||+|---||.-|---| ..+||-|++......+..|
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 457999998877666 78999999999999997643 6789999987654444333
No 199
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.1 Score=48.27 Aligned_cols=153 Identities=13% Similarity=0.036 Sum_probs=97.8
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGC 317 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~ 317 (418)
+++++.|...|++. +..++..|+.-+..+....+ ..+++ .+|...++++.-. +....-.++-+|+.|+.-.--.
T Consensus 340 E~vie~Lls~l~d~--dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDT--DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCC--cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 46888888888888 89999999999999988776 33333 3677777766533 3455567888888888522211
Q ss_pred HHHHhccCChHHHHHHHhc--------CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHH
Q 014817 318 AEFAEHALTVPLLVKTILK--------ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA 388 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~~--------~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A 388 (418)
-...+ .++|.+++-+.- ....++..|+-++|.+++ +++...+-+...=.-..|...+... .-..|++|
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAA 491 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAA 491 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHH
Confidence 11222 245555555432 355688999999999998 4544333222111111222233344 78899999
Q ss_pred HHHHHHHHhhC
Q 014817 389 QLLLKLLRDSW 399 (418)
Q Consensus 389 ~~~L~~l~~~~ 399 (418)
+.+++......
T Consensus 492 sAAlqE~VGR~ 502 (1133)
T KOG1943|consen 492 SAALQENVGRQ 502 (1133)
T ss_pred HHHHHHHhccC
Confidence 88888777653
No 200
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.019 Score=52.07 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=39.5
Q ss_pred cCcCcc-ccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 19 RCPISL-ELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 19 ~Cpi~~-~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
.||.|+ +.+..|- +.+|||+-|-+|...-|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 388887 3555664 338999999999999999999999999988765544
No 201
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.90 E-value=0.015 Score=38.84 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=35.0
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
..|=.|...=...++++|||..|+.|..- +...-||.|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 34666777778899999999999988332 33566999999987554
No 202
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.88 E-value=0.034 Score=36.88 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=31.6
Q ss_pred cCcCccc--cccCCeecCCC-----CcccHHHHHHHHHc-CCCCCCCCC
Q 014817 19 RCPISLE--LMCDPVTVCTG-----QTYDRPSIESWVAT-GNTTCPVTR 59 (418)
Q Consensus 19 ~Cpi~~~--~~~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~cp~~~ 59 (418)
.|-||.+ .-.+|.+.||. +.|=+.|+.+|+.. +...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778885 55678888885 56889999999974 356799985
No 203
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.88 E-value=0.44 Score=47.44 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=109.2
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc----ccHHHHHHHHHHHhcCHhHH
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK----CDAERALATVELLCRIPAGC 317 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~~ 317 (418)
...+.+++.++ +...+..|...|..++........++...++..|.+++.+++. .+...++.++..|-.+.-..
T Consensus 85 a~~i~e~l~~~--~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG--NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567777777 6777777889999999888889999999999999999988755 23334444444443222111
Q ss_pred HHHHhccCChHHHHHHH--hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 318 AEFAEHALTVPLLVKTI--LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l--~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
-..+.. .+|...+.+. ...+..+...|+..|-++..++...++.+.++--+..|+..++.. +..++.+|..++..|
T Consensus 163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNAL 240 (713)
T ss_pred eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 111111 2233333333 335667789999999999998888899999999999999999888 888888888888777
Q ss_pred Hhh
Q 014817 396 RDS 398 (418)
Q Consensus 396 ~~~ 398 (418)
-..
T Consensus 241 ~~~ 243 (713)
T KOG2999|consen 241 FRK 243 (713)
T ss_pred Hhh
Confidence 654
No 204
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.76 E-value=4.5 Score=39.53 Aligned_cols=225 Identities=13% Similarity=0.066 Sum_probs=126.6
Q ss_pred HHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC-hhHHHhhcccCCchHHHH
Q 014817 123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT-ETECMEIASDADKITSLS 201 (418)
Q Consensus 123 ~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv 201 (418)
+|++.|..+....+..-..+.+.||+..+++.|..... .+.+. .-...-... ..+.+......-.+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i---- 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD-------FALEE--NKNEEAGSGIPPEYKESSVDGYSI---- 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHhc--ccccCCCCCCCCCccccccccccc----
Confidence 46777777776666667778899999999999965421 11110 000000000 00111111110000
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHh-cccch-hhhhHhhchhhhHHHHHHHhhcCC-CChhhhHHHHHHHHHHcccccc-HH
Q 014817 202 SLLFHSSIEVRVNSAALIEIVLA-GMRSQ-ELRAQISNLDEIFEGVIDILKNLS-SYPRGLKVGIKALFALCLVKQT-RY 277 (418)
Q Consensus 202 ~~L~~~~~~~~~~a~~~L~~L~~-~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~a~~aL~~L~~~~~n-~~ 277 (418)
.-..........+.|..+.. ..... ..|..+ .+...+..|..++++.. .-+.+-..|+..+..+-.++.. -.
T Consensus 70 ---~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 70 ---SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred ---CHHHHHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 00001111222233333321 01111 222222 21235667777777652 1356777888889888887764 45
Q ss_pred HHHHcCchHHHHHHhc-CC---CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCCh-------HHHHHHH
Q 014817 278 KAVAAGAAETLVDRLA-DF---DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD-------RATEYAA 346 (418)
Q Consensus 278 ~i~~~G~v~~Lv~lL~-~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~-------~~~~~A~ 346 (418)
.+.++|.++.+++.+. .+ +.++....-.+|..||-+..|.+.+.+. +.++.+++++.+.+. +.-..--
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG 224 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS-NPLDKLFEIFTSPDYVKALRRRDTASNLG 224 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc-ChHHHHHHHhCCHHHHHHhcccchHHHHH
Confidence 5578999999999888 43 3455555667888999999999999995 999999998866211 1122222
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 014817 347 GALAALCSASERCQRDAVS 365 (418)
Q Consensus 347 ~~L~~l~~~~~~~~~~~~~ 365 (418)
..+-.|.++.|..+..+++
T Consensus 225 ~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 225 NSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHHccCHHHHHHHHH
Confidence 3445567777777776544
No 205
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.74 E-value=1.2 Score=42.21 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=89.7
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc---hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS---QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
..+..+.+.++.|+.+-+..|+.++.-+ +.. .+....+.. ...|.|...+.++...+.++..++.+|.-++.
T Consensus 86 tL~~~~~k~lkkg~~~E~~lA~~~l~Ll---~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 86 TLLDALLKSLKKGKSEEQALAARALALL---ALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHH---hhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 3477888888888877777777777777 333 123344433 47889999999874345666677767776654
Q ss_pred cc-ccHHHHHH-cCchHHHHH--HhcC-C---------CcccHHHHHHHHHHHhc-CHh-HHHHHHhccCChHHHHHHHh
Q 014817 272 VK-QTRYKAVA-AGAAETLVD--RLAD-F---------DKCDAERALATVELLCR-IPA-GCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 272 ~~-~n~~~i~~-~G~v~~Lv~--lL~~-~---------~~~~~~~a~~~L~~L~~-~~~-~~~~i~~~~g~i~~Lv~~l~ 335 (418)
.. ..-..+.+ ...+..+.. .+.. + ++.+...|+..-..|.. .+. ......+ ..++.|+.+|.
T Consensus 161 v~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~ 238 (309)
T PF05004_consen 161 VGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLD 238 (309)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhc
Confidence 21 11111110 122332211 1221 1 23466666655555552 222 2223333 46999999999
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 014817 336 KISDRATEYAAGALAALCS 354 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~ 354 (418)
+.+..+|..|-.+|.-|.-
T Consensus 239 s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 239 SDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999888877766543
No 206
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.74 E-value=0.02 Score=52.24 Aligned_cols=42 Identities=29% Similarity=0.601 Sum_probs=36.3
Q ss_pred ccCcCccccccC---CeecCCCCcccHHHHHHHHHcC--CCCCCCCC
Q 014817 18 FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATG--NTTCPVTR 59 (418)
Q Consensus 18 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~ 59 (418)
|.||+.++.-.| ||+++|||..-+.++...-++| ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 799999998876 8999999999999999887766 45699984
No 207
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.63 E-value=0.17 Score=46.19 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL 200 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 200 (418)
..-|++.|.-++--++..|..+.+..++..|+++|.... .+.++..++.+|..+..+...|.+.+-+.+|+..+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~------~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN------PPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC------CchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 455889999999889999999999999999999995543 47888889998887767777889999999999999
Q ss_pred HHHhcCC--CHHHHHHHHHHHHHH
Q 014817 201 SSLLFHS--SIEVRVNSAALIEIV 222 (418)
Q Consensus 201 v~~L~~~--~~~~~~~a~~~L~~L 222 (418)
+.++++. +.+++...+..|.-.
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HHHHccccccHHHhHHHHHHHHHH
Confidence 9999875 578888777777665
No 208
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.63 E-value=0.79 Score=39.79 Aligned_cols=117 Identities=18% Similarity=0.127 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhh-hhHHhhcChHHHHHHHhhcccccc--cCCChhHHHHHHHHH
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKN-RSLISSHNVRAILSQVFFTNINVK--TASSPELAHESLALL 177 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~--~~~~~~v~~~a~~~L 177 (418)
......+++.+++.... .+.+..|+...+..+.. -..|++.||+..|+.+|..-.... ...+.+.+..++.+|
T Consensus 65 ~~~p~~~i~~L~~~~~~----~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPST----SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp CHHHHHHHHHHTTT--H----HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCcc----HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 35567788999876432 25677777666654433 445778999999999995432110 012456788888888
Q ss_pred hcCCCChhHHHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817 178 VMFPLTETECMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIV 222 (418)
Q Consensus 178 ~~l~~~~~~~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L 222 (418)
..+..+. .+...+ ...+++..|+..|.+.+..++..++.+|..+
T Consensus 141 kal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 141 KALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 8877666 444444 4689999999999999999999999998877
No 209
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.026 Score=53.50 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=39.7
Q ss_pred CCcccCcCccccccCCe-----e---cCCCCcccHHHHHHHHHc-C-----CCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPV-----T---VCTGQTYDRPSIESWVAT-G-----NTTCPVTRSPLT 63 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv-----~---~~~g~~~~r~~i~~~~~~-~-----~~~cp~~~~~l~ 63 (418)
..+..|=||++...+++ . .+|.|+||..||.+|-.. . ...||.|+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 44789999999999998 3 469999999999999742 2 356999997754
No 210
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.59 E-value=2.7 Score=36.27 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHH
Q 014817 208 SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAET 287 (418)
Q Consensus 208 ~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~ 287 (418)
++.+|.+++.++..|+ ...+ .+. ...++.+...|+++ ++.+++.|+.+|.+|...+-.+.+ ...+..
T Consensus 1 ~~~vR~n~i~~l~DL~--~r~~----~~v--e~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC--IRYP----NLV--EPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVK---GQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHH--HhCc----HHH--HhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeeh---hhhhHH
Confidence 4678999999999994 3332 222 34788999999999 899999999999999876543332 123477
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 288 LVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 288 Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
++.++.+.+++++..|..++..+...
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 78888888999999999999988854
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.57 E-value=0.097 Score=41.64 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=60.5
Q ss_pred hhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 230 ELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 230 ~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
+|...+-. .-.++..|+++|.... ++.+...|+.=|..++...++ +..+-+.|+=..++++|.+++++++..|+.++
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44444533 2348899999996553 788888999999999977554 44445679999999999999999999999998
Q ss_pred HHHh
Q 014817 308 ELLC 311 (418)
Q Consensus 308 ~~L~ 311 (418)
..|.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 212
>PRK14707 hypothetical protein; Provisional
Probab=94.56 E-value=8.7 Score=44.81 Aligned_cols=282 Identities=13% Similarity=-0.004 Sum_probs=165.0
Q ss_pred CCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHH
Q 014817 96 KQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLA 175 (418)
Q Consensus 96 ~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~ 175 (418)
....+...|..+++-++....+. .+..|+..|.......+..+. -.+..++...+.-|+.=. +..+...|+.
T Consensus 199 ~~~~~~q~ia~~lNa~sKWp~~~-~c~~aa~~la~~l~~~~~l~~-~~~~q~va~~lN~lsKwp------~~~~C~~a~~ 270 (2710)
T PRK14707 199 RSAMDAQGVATVLNALCKWPDTP-DCGNAVSALAERLADESRLRN-ELKPQELGNALNALSKWA------DTPVCAAAAS 270 (2710)
T ss_pred hcccchHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHcCcHHHHH-hCChHHHHHHHHHHhcCC------CchHHHHHHH
Confidence 34445556777777776543222 356788888866555444443 334556777777775432 3456777777
Q ss_pred HHh-cCCCChhHHHhhcccCCchHHHHHHhcC-CC-HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817 176 LLV-MFPLTETECMEIASDADKITSLSSLLFH-SS-IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL 252 (418)
Q Consensus 176 ~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~-~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~ 252 (418)
+|. .++.+. ..++.+- +-.+...+.-|+. .+ ...+..+..+-..| ..+.+.+..+-. .+ +.-.++-|..=
T Consensus 271 ~lA~rl~~~~-~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl---~~d~~l~~~~~~-~~-~~~~LNalsKW 343 (2710)
T PRK14707 271 ALAERLVDDP-GLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERL---ADDPELCKALNA-RG-LSTALNALSKW 343 (2710)
T ss_pred HHHHHHhhhH-HHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHH---hccHhhhhccch-HH-HHHHHHHhhcC
Confidence 666 454333 5555553 3334444455543 33 44444455555555 666666666632 33 34444444432
Q ss_pred CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHH-HHHhcCHhHHHHHHhccCChHHH
Q 014817 253 SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATV-ELLCRIPAGCAEFAEHALTVPLL 330 (418)
Q Consensus 253 ~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L-~~L~~~~~~~~~i~~~~g~i~~L 330 (418)
.++......|...-..|+...+-+..+- .-++..++.-|+ =++......++..| ..|..+.+-++.+-. .+|..+
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~--Q~van~ 420 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP--QGVSNA 420 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch--hhHHHH
Confidence 2145566666666667777777666654 334555566554 34555566666666 567777788887765 568888
Q ss_pred HHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHH-HHHHHHHHHH
Q 014817 331 VKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKR-KAQLLLKLLR 396 (418)
Q Consensus 331 v~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~-~A~~~L~~l~ 396 (418)
++-|+. .+..+...|+..|..-...+.+.++.+--.++... ++.++...+..... .|..+...|.
T Consensus 421 lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~-LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 421 LNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQA-LDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhc
Confidence 888877 67777777777776655558888876655555444 47777765555544 4444444444
No 213
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.54 E-value=0.26 Score=35.61 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHHHHHHhc
Q 014817 258 GLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGCAEFAEH 323 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 323 (418)
-++.|++|+.++++.+....-+.+.++++.++++..+. .-.++--|..+|..++...++.+.+.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 46789999999999888877777889999999999754 4678889999999999999999988763
No 214
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.027 Score=54.63 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=37.8
Q ss_pred CCCcccCcCccccc-----------------cCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELM-----------------CDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~-----------------~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
+...--|+||+... ++=+++||.|.|-+.|++.|.+.-.-.||.|+.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44445799997642 1233559999999999999998423479999998864
No 215
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.29 E-value=0.011 Score=60.29 Aligned_cols=45 Identities=27% Similarity=0.556 Sum_probs=29.8
Q ss_pred cCcCccccccCCeec---CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTV---CTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.||+|..-+.|-.+. .|+|-||..||..|-.. ..+||+|+..|..
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 566666666665544 47777777777777653 5678888776653
No 216
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.22 E-value=2 Score=37.15 Aligned_cols=109 Identities=11% Similarity=0.140 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh-hHHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE-IFEGV 245 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g-~i~~L 245 (418)
+.++.+++.+|+-|+..-+. ++ ...++.+...|+++++.+|..|+.+|..|. ..+-. .+ .| .+..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li---~~d~i--k~---k~~l~~~~ 68 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLI---LEDMI--KV---KGQLFSRI 68 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HcCce--ee---hhhhhHHH
Confidence 67888888888866543311 11 235889999999999999999999999994 33221 11 23 34777
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcC
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLAD 294 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~ 294 (418)
+.++.+. +++++..|...+..+... .++.. ...++.++..|..
T Consensus 69 l~~l~D~--~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 69 LKLLVDE--NPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNN 112 (178)
T ss_pred HHHHcCC--CHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhC
Confidence 7888777 899999999999999876 33322 2245555555554
No 217
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.11 E-value=0.53 Score=43.64 Aligned_cols=191 Identities=16% Similarity=0.075 Sum_probs=117.1
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh-hHHHHHHHhhcCC--CChhhhHHHHHHHHHHcccc
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE-IFEGVIDILKNLS--SYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g-~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~~~ 273 (418)
+..+.+++.+-+.+.+--+..+++-+ ..+......+....+ ....+..++.... ..+..+--+++++.|+..+.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~---~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~ 141 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLA---ALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP 141 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHH---CCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHH---HhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC
Confidence 34455555555555566677777777 666666555543322 3455555555442 25667788999999999999
Q ss_pred ccHHHHHHcC--chHHHHHHhcCC----CcccHHHHHHHHHHHhcCHhHHHH--HHhccCChHHHHHHHhc--CChHHHH
Q 014817 274 QTRYKAVAAG--AAETLVDRLADF----DKCDAERALATVELLCRIPAGCAE--FAEHALTVPLLVKTILK--ISDRATE 343 (418)
Q Consensus 274 ~n~~~i~~~G--~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~--i~~~~g~i~~Lv~~l~~--~~~~~~~ 343 (418)
..+..+.+.. .+-..+..+... +..++..++.++.|++..-..... -.. ...+..+++.+.. .+++..-
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~ 220 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALY 220 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHH
Confidence 9988887643 333333333333 566777788888898832111110 000 0123445553333 6888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817 344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391 (418)
Q Consensus 344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 391 (418)
.++.+|.++...++.........|+-..+.........++.++.+..+
T Consensus 221 R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 221 RLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 999999999986666666655567777766666555578888877653
No 218
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=3.7 Score=42.90 Aligned_cols=247 Identities=13% Similarity=0.118 Sum_probs=128.1
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh--------HHHhhcc
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET--------ECMEIAS 192 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~i~ 192 (418)
..+|++++..+...+. | .+. -++..|--+++++ ....+-.|..+|..++.... +.-..|.
T Consensus 262 ~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp-------~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt 329 (865)
T KOG1078|consen 262 IYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSP-------KVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT 329 (865)
T ss_pred HHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc
Confidence 3566666666643221 1 122 1666676777766 46678888888887764331 1111222
Q ss_pred c---CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh------------chhhhHHHHHHHhhcCCCChh
Q 014817 193 D---ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS------------NLDEIFEGVIDILKNLSSYPR 257 (418)
Q Consensus 193 ~---~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~------------~~~g~i~~Lv~lL~~~~~~~~ 257 (418)
+ .=+-..+..+|+.|+.+.......-+.++.+ -..++++..+. ...+.+..|.++|++.. .-+
T Consensus 330 d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~-disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG-g~e 407 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVS-DISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG-GFE 407 (865)
T ss_pred ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHH-hccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc-Cch
Confidence 1 1133445566666766555555555555532 22344443332 11234444555555432 344
Q ss_pred hhHHHHHHHHHHcc-ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817 258 GLKVGIKALFALCL-VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 258 ~~~~a~~aL~~L~~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
-+.+...++..+.. +.+.|.. ++..|...+.+ -+....+..+|..|.... -..... ..-+..+.+.+--
T Consensus 408 ~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~Eg--P~a~~P-skyir~iyNRviL 477 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEG--PKAPNP-SKYIRFIYNRVIL 477 (865)
T ss_pred HHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccC--CCCCCc-chhhHHHhhhhhh
Confidence 45555555554443 2333322 33344444433 233445555555554210 000001 1223334444444
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
.+..++..|+.+|..+..+++..+.. +.-.|.+.+... ++.+|+.|...|+++..
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~-DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDS-DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence 78889999999999988655443332 344444555444 99999999999999994
No 219
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.02 E-value=0.034 Score=51.24 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=37.2
Q ss_pred CcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
+++ ||+|.+.|.-.= --+||+..||-|.....+.-++.||.|+..+.+.+
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 344 999999885332 34699999999977765544788999998876544
No 220
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.96 E-value=6 Score=42.06 Aligned_cols=192 Identities=15% Similarity=0.053 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
+-++-.|+.++...+. +..+. .++++..|..+....+.++......+|...+ ..+.+..... . ..+.|.
T Consensus 505 ~~~ki~a~~~~~~~~~-----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv--~~dpef~as~-~-skI~P~ 575 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCK-----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV--KLDPEFAASM-E-SKICPL 575 (1005)
T ss_pred CchhHHHHHHHHhccC-----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh--ccChhhhhhh-h-cchhHH
Confidence 4456666666554441 11111 4677888888888788888888888888885 4555554444 3 347777
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCC----cccHHHHHHHHHHHhcCH--hHHH
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFD----KCDAERALATVELLCRIP--AGCA 318 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~----~~~~~~a~~~L~~L~~~~--~~~~ 318 (418)
++.+.-..+.+|.+...+-.++..|+....|...+.+. .+|.+++.|..+. ......++.+|..+.++. .--.
T Consensus 576 ~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~ 654 (1005)
T KOG2274|consen 576 TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN 654 (1005)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccH
Confidence 77776655447888888888888888766666666555 7999999998654 566777888887666432 2223
Q ss_pred HHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHH
Q 014817 319 EFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLT 370 (418)
Q Consensus 319 ~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 370 (418)
.+.. -+.|++.++..+ ++...-+++-.+|..+-..+.+....-..+++..
T Consensus 655 ~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 655 LLIC--YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 3333 357888887755 6666778888888887664555444334444433
No 221
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.015 Score=38.46 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=35.8
Q ss_pred cCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
-|.||-+--.|.|+--|||. .|..|=.+.|...+..||.|+.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998888888899986 467777776665788999998764
No 222
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.85 E-value=2 Score=42.32 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=96.2
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHccccc----cHHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHhcC
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVKQ----TRYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLCRI 313 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~----n~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~ 313 (418)
+..+++.. +.+.+-+|+-....++.+++ ||+.+.++=+.+.+-++|... +.-.+.-++.+|...|+.
T Consensus 16 ~~~L~~~k--~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLKGK--RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhccc--ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 55566666 67788888888888988765 788899999999999999743 123456678888888888
Q ss_pred HhH--HHHHHhccCChHHHHHHHhc-CChH------HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817 314 PAG--CAEFAEHALTVPLLVKTILK-ISDR------ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ 377 (418)
Q Consensus 314 ~~~--~~~i~~~~g~i~~Lv~~l~~-~~~~------~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 377 (418)
++- ...++. .||.|.+.+.. .+++ +-+.+..+|..++.. +.-.+..+..|+++.+.+.-.
T Consensus 94 pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 94 PELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence 764 345555 38999999976 3333 778999999999884 566777889999999975543
No 223
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.82 E-value=0.34 Score=40.97 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=96.5
Q ss_pred hHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-
Q 014817 197 ITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK- 273 (418)
Q Consensus 197 i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~- 273 (418)
+..++..|. ..++++|..++-++..+ - +..++.... -+-+.+-..+..+ +.+....+..++..|-...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~---l--~~~~~~~~~--~~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKL---L--DAAREEFKE--KISDFIESLLDEG--EMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHH---H--HHHHHHHHH--HHHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHH---H--HHhHHHHHH--HHHHHHHHHHccc--cchhHHHHHHHHHHHhCCCH
Confidence 455556554 35788888888888887 3 444444421 1233333444444 4567788888888887654
Q ss_pred ccHHHH-HHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChH-HHHHHHHH
Q 014817 274 QTRYKA-VAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDR-ATEYAAGA 348 (418)
Q Consensus 274 ~n~~~i-~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~-~~~~A~~~ 348 (418)
+-...+ ...|.++.++.++. ..+...+..++.+|..-|.+...|..+.. .+++-|-+..+. .++. ++..|+-+
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHH
Confidence 344444 46899999999998 66777888899999988888888888887 458888887754 4455 67776665
Q ss_pred HH
Q 014817 349 LA 350 (418)
Q Consensus 349 L~ 350 (418)
|.
T Consensus 154 L~ 155 (157)
T PF11701_consen 154 LC 155 (157)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 224
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=1.5 Score=47.15 Aligned_cols=258 Identities=15% Similarity=0.085 Sum_probs=154.4
Q ss_pred HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh
Q 014817 125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL 204 (418)
Q Consensus 125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L 204 (418)
-..|..+.+++.+|...+.++.++..++.++-++ +-+-..+.++..|...+.. + +.+.-+-.+|..|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind---------ehRSslLrivscLitvdpk---q-vhhqelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND---------EHRSSLLRIVSCLITVDPK---Q-VHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech---------HHHHHHHHHHHHHhccCcc---c-ccHHHHHHHHHHH
Confidence 4567788899999999999999998888888443 3344444444444332211 1 1334567788888
Q ss_pred cCCC------------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc--------CCCChhhhHHHHH
Q 014817 205 FHSS------------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN--------LSSYPRGLKVGIK 264 (418)
Q Consensus 205 ~~~~------------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~--------~~~~~~~~~~a~~ 264 (418)
++|- ........++++... ..+...+..+++ .|+...|...|.. +.++.-+-..-..
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwriv--gvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfk 806 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIV--GVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK 806 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHH--ccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence 7742 234455667777774 455566777776 5667777666542 1002122222333
Q ss_pred HHHHH---c--cccccHHHHHHcCchHHHHHHhcCC------------------------Cccc--HHHHHHHHHHHhc-
Q 014817 265 ALFAL---C--LVKQTRYKAVAAGAAETLVDRLADF------------------------DKCD--AERALATVELLCR- 312 (418)
Q Consensus 265 aL~~L---~--~~~~n~~~i~~~G~v~~Lv~lL~~~------------------------~~~~--~~~a~~~L~~L~~- 312 (418)
.|+.+ + .+..|+..+-..=.-+.+..+|... .+.+ ...|+..+..+-.
T Consensus 807 ilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledn 886 (2799)
T KOG1788|consen 807 ILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDN 886 (2799)
T ss_pred HHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccc
Confidence 33332 2 3334544432111111222222210 0111 1112222222211
Q ss_pred ----------CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh--hCC
Q 014817 313 ----------IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ--SDC 380 (418)
Q Consensus 313 ----------~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~ 380 (418)
-...++.+.. +|++..++..+....+..|-.-+..+..+++.++-.....-..|.++.|++++. ..+
T Consensus 887 ifavntPsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg 965 (2799)
T KOG1788|consen 887 IFAVNTPSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG 965 (2799)
T ss_pred eeeeccCCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC
Confidence 1123566777 599999999998899999999999999999988888888888999999999984 233
Q ss_pred CHHHHHHHHHHHHHHHhhC
Q 014817 381 TDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 381 ~~~~~~~A~~~L~~l~~~~ 399 (418)
+...-..|.+++.+|.-+.
T Consensus 966 sspfLshalkIvemLgayr 984 (2799)
T KOG1788|consen 966 SSPFLSHALKIVEMLGAYR 984 (2799)
T ss_pred CchHhhccHHHHHHHhhcc
Confidence 6666678888999888763
No 225
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.74 E-value=2.5 Score=41.95 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=89.2
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh-------------hhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL-------------RAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
..+..|+.+|.+ +++...++..+.-|. ...++. |+++.. -.+|.|++-.+.. +.+.+.+
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~--~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~--~~~~k~~ 342 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILL--SDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA--DDEIKSN 342 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHh--cCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc--ChhhHHH
Confidence 346777787766 667788899999984 332433 455543 4788898888877 5668888
Q ss_pred HHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHH
Q 014817 262 GIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTI 334 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l 334 (418)
-+.||.++-.+-....-+-+ ...+|.|++-|..++..++..++.+|..+.... -+.+.+| +..||..|
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~h---l~sLI~~L 411 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEH---LSSLIPRL 411 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHH---HHHHHHHH
Confidence 99999999887653333333 458899999998888889999999999888544 3333333 44555444
No 226
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.71 E-value=5.2 Score=37.71 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=101.2
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhh------ch
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQIS------NL 238 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~------~~ 238 (418)
++.+++.|+.+|+.++.-+.+.. ...++.+...++.++.+++..|+.+|..+.. .+. +.-.... ..
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~--~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLL--THGIDIFDSESDNDESVDS 112 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HcCchhccchhccCccchH
Confidence 57999999999998776542211 1236778888888899999999999999963 222 1111111 11
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC----CcccHHHHHHHHHHHhcCH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF----DKCDAERALATVELLCRIP 314 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~ 314 (418)
...+..+.+.+.+. +++++..|+..+..|-.++.... ...++..|+-+--++ +..++.--...+-..+...
T Consensus 113 ~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 113 KSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 35788888899988 88999999999999876654333 233444555444333 2344444444556666544
Q ss_pred hHHHHHHhccCChHHHHHHHhc
Q 014817 315 AGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 315 ~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
...+..+.. .+++.+-.+...
T Consensus 188 ~~~Q~~l~~-~f~~~l~~~~~~ 208 (298)
T PF12719_consen 188 PENQERLAE-AFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHH-HHHHHHHHHHhC
Confidence 433444442 777887776655
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.63 E-value=0.9 Score=38.41 Aligned_cols=144 Identities=14% Similarity=0.059 Sum_probs=90.3
Q ss_pred HHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHH
Q 014817 243 EGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEF 320 (418)
Q Consensus 243 ~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i 320 (418)
..++..|.. .. .++++..+.-++..+- +..+....+ -.-+.+-.++..++..-...+..+|..|- .-++....+
T Consensus 6 ~~lL~~L~~~~~-~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 6 DTLLTSLDMLRQ-PEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CHHHHHHHCTTT-SCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHhcccCC-CHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344554543 22 5778888888888772 223332211 12223333444444455667777887776 456777777
Q ss_pred HhccCChHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH-HHHHHHHHH
Q 014817 321 AEHALTVPLLVKTIL--KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR-AKRKAQLLL 392 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~--~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~A~~~L 392 (418)
....|.++.++.++. ..+...+..++.+|..-|. ++.+|..+.+. +++-|-.+.+...++. +|-.|+-.|
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHH
Confidence 766799999999998 6888889999998777555 77777755544 4577777775553566 566555444
No 228
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.63 E-value=0.029 Score=52.90 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=40.2
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHH-cCCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVA-TGNTTCPVTRSPLTDF 65 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~~~ 65 (418)
.|-||.+-=+|=-+=+|||-.|-.|+..|.. .+..+||.|+..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 7999999888877779999999999999985 4478899999776543
No 229
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.62 E-value=7 Score=37.44 Aligned_cols=206 Identities=14% Similarity=-0.005 Sum_probs=143.0
Q ss_pred HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh---hhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHH
Q 014817 188 MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE---LRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGI 263 (418)
Q Consensus 188 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~---~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~ 263 (418)
...+...|.+..|+..|..-+-+.|..++.+..++........ ....+... ..++ ..++.... +++..-.+.
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil---~~L~~gy~-~~dial~~g 144 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL---DILLRGYE-NPDIALNCG 144 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH---HHHHHGGG-STTTHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH---HHHHHHhc-CccccchHH
Confidence 3444566889999999999999999999999999953222221 12233332 2233 33333332 677888888
Q ss_pred HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHH-HhcCHhHHHHHHhc--cCChHHHHHHHhcCChH
Q 014817 264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVEL-LCRIPAGCAEFAEH--ALTVPLLVKTILKISDR 340 (418)
Q Consensus 264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~--~g~i~~Lv~~l~~~~~~ 340 (418)
..|+.....+.-...+.+...+..+.+.+..++=++...|..++.. |..+.......... ........++|.++|-.
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 8889988888888888898899999999998888888999999976 44666655555442 13556777778889999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH----hcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 341 ATEYAAGALAALCSASERCQRDAV----SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+.+++..|..|-- ++.+...|. +..-+..++.+|++. +..+|-.|--+.+.+..+.
T Consensus 225 tkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 225 TKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred eehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence 99999999999876 333333222 234566777788777 9999999999988888774
No 230
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.50 E-value=0.018 Score=41.44 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=22.4
Q ss_pred cccCcCcccccc-C---Ceec----CCCCcccHHHHHHHHHc--CC--------CCCCCCCCCCC
Q 014817 17 HFRCPISLELMC-D---PVTV----CTGQTYDRPSIESWVAT--GN--------TTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~-d---Pv~~----~~g~~~~r~~i~~~~~~--~~--------~~cp~~~~~l~ 63 (418)
+..|+||...+. + |.+. .||++|=..|+.+||.. +. ++||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 456999998754 2 4444 48999999999999863 11 24999988763
No 231
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.43 E-value=0.085 Score=41.98 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV 222 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L 222 (418)
.+..|+++|.... ++.+..-|+.=|+.+....+..|..+-+.|+-..+.++|.+++++++..|..++..+
T Consensus 44 llk~L~~lL~~s~------d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSD------DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHH------HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC------CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6788999995543 466666677777777766657788887889999999999999999999999999887
No 232
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.42 E-value=1.1 Score=41.03 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817 300 AERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ 377 (418)
Q Consensus 300 ~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 377 (418)
...|+.+|.-++ -++..|..+..+ ..+..++.++.. ..+.++..++.+|..+...++.+.....+.+|+..+..++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 455778887777 577888888875 999999999944 67889999999999988888888889999999999999997
Q ss_pred hC-CCHHHHHHHHHHHHHHH
Q 014817 378 SD-CTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 378 ~~-~~~~~~~~A~~~L~~l~ 396 (418)
+. .+..+|-+....|--.-
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 54 35677777666654433
No 233
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.41 E-value=0.077 Score=38.17 Aligned_cols=43 Identities=26% Similarity=0.537 Sum_probs=33.4
Q ss_pred cCcCccccccC-----Ceec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCD-----PVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~~d-----Pv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+||-|+-=| + ||.- .|+|.|--.||.+|++. ...||.+++++.
T Consensus 33 ~C~eCq~~~-~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGM-TPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCC-CCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 577777654 3 3444 69999999999999986 678999988753
No 234
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.34 E-value=1.9 Score=45.58 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
.+...-.|..++..++.....+...+ .-.+...+..+. +..+.++..|+.++... ... . .......+++..
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~---~~~-~--vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGY---CKV-K--VLLSLQPMILDG 534 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhc---cCc-e--eccccchHHHHH
Confidence 34544466666654433211111111 112333344443 34567777888877777 422 1 111223678889
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHhHHHHHHh
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPAGCAEFAE 322 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 322 (418)
|.++.... +.++......+|...+..+.......++-..|..+.+.. +.|+.+...+-.++..|+...++..-+.+
T Consensus 535 L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKS--SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE 612 (1005)
T ss_pred HHHHcccc--cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence 99998877 788999999999999988877777777778888877664 56787888888888888875555555544
Q ss_pred ccCChHHHHHHHhcCC----hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 323 HALTVPLLVKTILKIS----DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 323 ~~g~i~~Lv~~l~~~~----~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
-.||.++..|.... .....-|+.+|..+.++.|.-.....-.-+++++.+..-+..+...-.++...||-+-..
T Consensus 613 --~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 613 --RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred --HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 57999999997754 556777888888777743332333333446666666553333777777788877776654
No 235
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.21 E-value=7.1 Score=39.90 Aligned_cols=133 Identities=8% Similarity=0.012 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
.+...++...+++ .+.+.-|...+.+..+.-|...+ -++..++++..++ +..|+..|+..|-.++
T Consensus 23 ~~y~~il~~~kg~---~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDe-------d~~iR~~aik~lp~~c 87 (556)
T PF05918_consen 23 EDYKEILDGVKGS---PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDE-------DVQIRKQAIKGLPQLC 87 (556)
T ss_dssp HHHHHHHHGGGS----HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-S-------SHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHccCC---HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc-------cHHHHHHHHHhHHHHH
Confidence 3455566555543 33456788888888877666554 3678899999877 5789999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh---cCCCChhh
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK---NLSSYPRG 258 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~ 258 (418)
.++.+....+ +..|+++|.+.++......-.+|..|. ..+. .+.+..|..-+. .+ +..+
T Consensus 88 k~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll---~~d~--------k~tL~~lf~~i~~~~~~--de~~ 149 (556)
T PF05918_consen 88 KDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLL---KQDP--------KGTLTGLFSQIESSKSG--DEQV 149 (556)
T ss_dssp -T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHH---HH-H--------HHHHHHHHHHHH---HS---HHH
T ss_pred HhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHH---hcCc--------HHHHHHHHHHHHhcccC--chHH
Confidence 8764444433 578899999988777777778888883 2221 234444444444 44 6778
Q ss_pred hHHHHHHHH
Q 014817 259 LKVGIKALF 267 (418)
Q Consensus 259 ~~~a~~aL~ 267 (418)
++.++..|.
T Consensus 150 Re~~lkFl~ 158 (556)
T PF05918_consen 150 RERALKFLR 158 (556)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887774
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.17 E-value=0.94 Score=49.28 Aligned_cols=138 Identities=16% Similarity=0.058 Sum_probs=100.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc---hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHH
Q 014817 202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN---LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK 278 (418)
Q Consensus 202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~ 278 (418)
.+|...++-+|......|.-| +..++. ..=.++.|+..|++. +...+.+=...|..+|..-.-+.
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~L---------C~FFGk~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs- 652 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPL---------CVFFGKEKSNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS- 652 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHH---------HHHhhhcccccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee-
Confidence 344445567777666666666 233331 123778899999988 78888777777776665543332
Q ss_pred HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 279 AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 279 i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
++.+.+|.|.+-|.++.+-+...|++.|..|+...--+...+. ..+.....+|-..|.=++..++.+|..++.
T Consensus 653 -~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 653 -VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 5778999999999998899999999999999987766555544 345666666777899999999999988776
No 237
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.056 Score=50.23 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=39.9
Q ss_pred CcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
++=.||||-.---..|..||||.-|+.||.+++-+ .+.|-.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 46789999887788889999999999999999875 778888876554
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.12 E-value=0.16 Score=29.91 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
++|.++++++++ +++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~--~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP--SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S--SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 478999999998 89999999999999874
No 239
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.01 E-value=5.2 Score=38.31 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=110.7
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh--chhhhHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS--NLDEIFE 243 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~--~~~g~i~ 243 (418)
++++.-.+..+|+.+...+ ..-+.+.....+..+.+..+.++-++...|..++..+. ..+........ ....++.
T Consensus 136 ~~dial~~g~mlRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll--t~hk~~~a~fl~~n~d~ff~ 212 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELL--TRHKKLVAEFLSNNYDRFFQ 212 (335)
T ss_dssp STTTHHHHHHHHHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHH--HSSHHHHHHHHHHTHHHHHH
T ss_pred CccccchHHHHHHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHH
Confidence 5778888888999988777 56667777888999999999999999999999999986 56655433332 2235777
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH----HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV----AAGAAETLVDRLADFDKCDAERALATVELLCRIP 314 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~----~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 314 (418)
....+|.++ +--++..++..|..|-....|..-|. +..-+..++.+|++.+..++-.|-.+......++
T Consensus 213 ~~~~Ll~s~--NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 213 KYNKLLESS--NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHCT-S--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHccCC--CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 788889888 89999999999999998888766554 3456778888888888899999988887666544
No 240
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.031 Score=39.79 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=35.7
Q ss_pred CCcccCcCccccccC-Ceec-CCCCcccHHHHHHHHHc--CCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCD-PVTV-CTGQTYDRPSIESWVAT--GNTTCPVTRSPLT 63 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~ 63 (418)
|-+-.||-|+-+=-| |.++ -|.|.|-..||.+|+.. +...||.|++.+.
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 334467777665444 5555 69999999999999974 2456999998653
No 241
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.91 E-value=5.3 Score=39.64 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=117.9
Q ss_pred chHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChh----hhHHHHHHHHHH
Q 014817 196 KITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPR----GLKVGIKALFAL 269 (418)
Q Consensus 196 ~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~----~~~~a~~aL~~L 269 (418)
.+..++.+..+. ++..+..++..+..|+ -+..+. ..+ ...+..+...+ ... ... ..+...|....|
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~Lv--NK~~~~-~~l---~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLV--NKWPDD-DDL---DEFLDSLLQSISSSE--DSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH--cCCCCh-hhH---HHHHHHHHhhhcccC--CcchhHHHHHHHHHHHHHH
Confidence 566666665444 5777777888888774 121110 011 23455555544 222 333 344444555555
Q ss_pred ccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhH-------------HHHHHhccCChHHHHHHHh
Q 014817 270 CLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAG-------------CAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 270 ~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~Lv~~l~ 335 (418)
....... ....+..|+++|.+ +.+-..++..+..|... ++. |+++.. -.+|.|++...
T Consensus 262 v~R~~~~----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPL----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFK 333 (415)
T ss_pred HHcCCch----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHh
Confidence 4332211 12246668888876 55667777777777765 332 566665 46888888888
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
..+...+.+-+.+|.+|-.+-|.....-.-...+|.|++-|+.+ +..++..+..+|..+-...
T Consensus 334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 EADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA 396 (415)
T ss_pred hcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence 77777888999999999886665444333356888888888767 8889999999999887764
No 242
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.89 E-value=5.2 Score=39.13 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh-cccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF-TNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL 200 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 200 (418)
..|+..+..+..+.|..-..|.++|.++.+++.+. .... .+.++...--.+|.-|+.+. ...+.+.+.+.++.+
T Consensus 127 s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~----~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 127 SLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL----PSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKL 201 (379)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC----CcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHH
Confidence 56888888898888999999999999999999997 4321 25777777778888999998 788888899999999
Q ss_pred HHHhcCC
Q 014817 201 SSLLFHS 207 (418)
Q Consensus 201 v~~L~~~ 207 (418)
.+++.+.
T Consensus 202 f~if~s~ 208 (379)
T PF06025_consen 202 FEIFTSP 208 (379)
T ss_pred HHHhCCH
Confidence 9988764
No 243
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.066 Score=50.48 Aligned_cols=44 Identities=16% Similarity=0.421 Sum_probs=32.3
Q ss_pred ccCcCccccccCCe-----ecCCCCcccHHHHHHHHHcC-C-CCCCCCCCCC
Q 014817 18 FRCPISLELMCDPV-----TVCTGQTYDRPSIESWVATG-N-TTCPVTRSPL 62 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv-----~~~~g~~~~r~~i~~~~~~~-~-~~cp~~~~~l 62 (418)
-.|.||-+. ++-+ +-.|||+|.-.|+..||+.. . .+||+|+-.+
T Consensus 5 A~C~Ic~d~-~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDG-RPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccC-CccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 459999554 3333 33599999999999999843 3 5899998443
No 244
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.60 E-value=0.052 Score=56.58 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=37.7
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHc-CCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-GNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~ 63 (418)
+.|++|.+ ..+|+++.|||.||+.|+.+.+.. ....||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 889999999999999999998764 3446999975543
No 245
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.27 E-value=10 Score=38.45 Aligned_cols=264 Identities=12% Similarity=0.007 Sum_probs=134.8
Q ss_pred chhhhHHHHHHHHHhhhcChh-hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCC
Q 014817 117 TYGSRLSALRRLRGLARDSDK-NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDAD 195 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 195 (418)
+...+..|+-++.....+... .+..++ ..++|.+.....++ .-.+...++++++.++.+. ...|-..|
T Consensus 379 ~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~-------~l~vk~ttAwc~g~iad~v---a~~i~p~~ 447 (858)
T COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDS-------CLWVKSTTAWCFGAIADHV---AMIISPCG 447 (858)
T ss_pred hhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccc-------eeehhhHHHHHHHHHHHHH---HHhcCccc
Confidence 334455666666666654322 222233 55677777666643 3568888999988887433 34444445
Q ss_pred chHHHHHHhcCC---CHHHHHHHHHHHHHHHhcccchhhh-h---Hhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817 196 KITSLSSLLFHS---SIEVRVNSAALIEIVLAGMRSQELR-A---QISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALF 267 (418)
Q Consensus 196 ~i~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~s~~~~~~-~---~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~ 267 (418)
-++..+..+.-| .+....+.+|...||+ ......- + .+.. ....+..|++--+....+...+..+..+|.
T Consensus 448 Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv--~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 448 HLVLEVSASLIGLMDCPFRSINCSWRKENLV--DHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred cccHHHHHHHhhhhccchHHhhhHHHHHhHH--HhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 555555544333 5667788899999994 2111111 1 1111 012444454443322113456777777777
Q ss_pred HHccccc-cHHHHHHcCchHHHHH-----------HhcCCC----cccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHH
Q 014817 268 ALCLVKQ-TRYKAVAAGAAETLVD-----------RLADFD----KCDAERALATVELLCRIP-AGCAEFAEHALTVPLL 330 (418)
Q Consensus 268 ~L~~~~~-n~~~i~~~G~v~~Lv~-----------lL~~~~----~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L 330 (418)
.|-.... ....+ -+|....... .+...| .+++.+-+.+|..+.... ...+.. ++ ..+..+
T Consensus 526 tli~~~~d~V~~~-~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D-~lm~Lf 602 (858)
T COG5215 526 TLILICPDAVSDI-LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-ED-QLMELF 602 (858)
T ss_pred HHHhhcchhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HH-HHHHHH
Confidence 7754322 22221 1222222222 222111 345555666666554211 111111 11 244566
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 331 VKTILKI-SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 331 v~~l~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+++|.+. ...+-+....++.+++. +-+.+-+..-...+|.|.+.|... +..+.-.|..++..|++.
T Consensus 603 ~r~les~~~t~~~~dV~~aIsal~~-sl~e~Fe~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlant 669 (858)
T COG5215 603 IRILESTKPTTAFGDVYTAISALST-SLEERFEQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANT 669 (858)
T ss_pred HHHHhccCCchhhhHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHH
Confidence 7777654 33445566666666666 444444455566778777777333 455555666666666654
No 246
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=17 Score=38.27 Aligned_cols=171 Identities=13% Similarity=0.164 Sum_probs=110.4
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
..|..+|.+.... .+++|.+.+-.+....... ....|.+|+-..+. |.+|++..---|...+..+
T Consensus 38 ~dL~~lLdSnkd~--~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask-------n~EVKkLVyvYLlrYAEeq 102 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS--LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK-------NIEVKKLVYVYLLRYAEEQ 102 (968)
T ss_pred HHHHHHHhccccH--HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHhhcC
Confidence 3566677665432 4688888888665443332 23467788777766 5788877666555555433
Q ss_pred hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
.+-.. -.|..+-+-|+..++.+|..|.++|..+ |..+.. .=++-++-+...+. ++-+++.|+.
T Consensus 103 -pdLAL----LSIntfQk~L~DpN~LiRasALRvlSsI---------Rvp~Ia-PI~llAIk~~~~D~--s~yVRk~AA~ 165 (968)
T KOG1060|consen 103 -PDLAL----LSINTFQKALKDPNQLIRASALRVLSSI---------RVPMIA-PIMLLAIKKAVTDP--SPYVRKTAAH 165 (968)
T ss_pred -CCcee----eeHHHHHhhhcCCcHHHHHHHHHHHHhc---------chhhHH-HHHHHHHHHHhcCC--cHHHHHHHHH
Confidence 11111 2366777888999999998888877777 333322 21333344455555 7899999999
Q ss_pred HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
||-.|-+-+.+.... .+..+=.||.+.++.+.-.|+.+...+|
T Consensus 166 AIpKLYsLd~e~k~q----L~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 166 AIPKLYSLDPEQKDQ----LEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hhHHHhcCChhhHHH----HHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 999997766543332 3445556777778888888888777766
No 247
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.18 E-value=2.4 Score=38.56 Aligned_cols=132 Identities=20% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817 93 PTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE 172 (418)
Q Consensus 93 ~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~ 172 (418)
-+|+.|+....+..+-..|.........+..|.-.|++.-.+ + +|-.|++-|..+ +.-.+..
T Consensus 145 vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--e---------aI~al~~~l~~~-------SalfrhE 206 (289)
T KOG0567|consen 145 VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE--E---------AINALIDGLADD-------SALFRHE 206 (289)
T ss_pred CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH--H---------HHHHHHHhcccc-------hHHHHHH
Confidence 456666666667776666665544444566666666665321 1 344555555444 4567788
Q ss_pred HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK 250 (418)
Q Consensus 173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~ 250 (418)
++.+++.|-. .-+|+.|.+.|.. .++-+|..|+.+|..+ +. ...++.|.+.+.
T Consensus 207 vAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI---a~-----------e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 207 VAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAI---AD-----------EDCVEVLKEYLG 261 (289)
T ss_pred HHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhh---cC-----------HHHHHHHHHHcC
Confidence 8888777643 2468888888865 4688999999999988 21 336677777777
Q ss_pred cCCCChhhhHHHHHHHHHH
Q 014817 251 NLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 251 ~~~~~~~~~~~a~~aL~~L 269 (418)
+. ++-+++.+..+|--+
T Consensus 262 D~--~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 262 DE--ERVVRESCEVALDML 278 (289)
T ss_pred Cc--HHHHHHHHHHHHHHH
Confidence 76 566666666666544
No 248
>PRK14707 hypothetical protein; Provisional
Probab=92.11 E-value=30 Score=40.78 Aligned_cols=272 Identities=15% Similarity=0.056 Sum_probs=153.5
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhc-ccccccCCChhHHHHHHHHHhcCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFT-NINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
+.-+++-++....+. .+..|+..|......++..+..+ ...+|..++.-++. ++ ++ -..+|+..|.....
T Consensus 165 ~~lllNafSKw~~~~-~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~------~~-~c~~aa~~la~~l~ 235 (2710)
T PRK14707 165 ISLALNAFSKWSDNP-DCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPD------TP-DCGNAVSALAERLA 235 (2710)
T ss_pred HHHHHHHhhcCCCCc-hHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCC------Ch-hHHHHHHHHHHHHc
Confidence 444555554433222 24567777766555555555555 45566666666644 32 33 35566666664333
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh-hhH
Q 014817 183 TETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR-GLK 260 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~ 260 (418)
++...+..+ +.-.+.-.+.-|..- +..+...++.+|..=. ..+...+..+.. .++-..|=.+-+-. +.. .+.
T Consensus 236 ~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl--~~~~~l~~al~~-q~vanalNalSKwp--d~~vc~~ 309 (2710)
T PRK14707 236 DESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERL--VDDPGLRKALDP-INVTQALNALSKWA--DLPVCAE 309 (2710)
T ss_pred CcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH--hhhHHHHHhcCH-HHHHHHHhhhhcCC--CchHHHH
Confidence 443555555 444566666666553 4444555555554432 566666666632 33333333333333 334 444
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHH-HHHhcCHhHHHHHHhccCChHHHHHHHhc-C
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDKCDAERALATV-ELLCRIPAGCAEFAEHALTVPLLVKTILK-I 337 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L-~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~ 337 (418)
+|...-..|....+-+.. .+.-.+..++.-|+. ++..+...++..| ..|+.+++.+..+-. .++..+++-++. .
T Consensus 310 Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp 386 (2710)
T PRK14707 310 AAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWP 386 (2710)
T ss_pred HHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCC
Confidence 444455566654444433 344445555666653 4555555555555 677788888877764 568888888887 5
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
+..+...|+..|..=-.++++.++.+-..|+ .-++.-|+...+..+.+.|+..|..
T Consensus 387 ~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 387 DTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred CchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHH
Confidence 5556666666665544458888886655555 4455788777677777776665543
No 249
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.11 E-value=13 Score=39.58 Aligned_cols=251 Identities=13% Similarity=0.061 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHH
Q 014817 121 RLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITS 199 (418)
Q Consensus 121 ~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 199 (418)
+.........++. .+...+..+....++|.+-.+..+. +..++...+..+..+.--- .+..- -.-.++.
T Consensus 372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-------~~~vr~a~a~~~~~~~p~~--~k~~t-i~~llp~ 441 (759)
T KOG0211|consen 372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-------ALHVRSALASVITGLSPIL--PKERT-ISELLPL 441 (759)
T ss_pred hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------cchHHHHHhccccccCccC--CcCcC-ccccChh
Confidence 4455555555543 2334455666667777777777665 4566665555443332111 11111 1234566
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHH
Q 014817 200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKA 279 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i 279 (418)
+...++...++++.+..+.+..+- ...+.....+.. +..++.++.+-... ...++.+..+.+..++.... ..+
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~--~v~~v~g~~~~s-~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~--~~~ 514 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLE--EVNDVIGISTVS-NSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLG--VEF 514 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHH--hccCcccchhhh-hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhh--hHH
Confidence 667777788888888887776662 223333333323 45788888887776 67888888888888876544 222
Q ss_pred HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCH
Q 014817 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASE 357 (418)
Q Consensus 280 ~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~ 357 (418)
.+.-.-+.+..-+.+..-++.+.|+..|..++..-. .+.... -.++.++......+-..+...+.++..++. +.+
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e 591 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE 591 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence 221111222222223234566666666666663111 122221 123444443333333334333333333332 233
Q ss_pred HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 358 RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 358 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
-.. ...++.+..+.... .+.+|-++++.|..+..
T Consensus 592 i~~-----~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 592 ITC-----EDLLPVFLDLVKDP-VANVRINVAKHLPKILK 625 (759)
T ss_pred HHH-----HHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence 222 22555555555333 66667666666665544
No 250
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.12 Score=48.80 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=40.1
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
...|.+++.+|.|||-...|-.|+...|-.|+.. +.+-|.+++++...++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL 89 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL 89 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence 3489999999999999999999999999999986 5555666655544333
No 251
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.76 E-value=2 Score=38.03 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSL 200 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L 200 (418)
..|+..|.-+++ .++.|..++++.+--.|-.+|...+..+. .+-.+..++.+++.|..+++ +....+....++|..
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~--fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSK--FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCc--cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 456666666665 57889999988876667777754432111 34567788888888776653 345566678999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-------hhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccc
Q 014817 201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-------DEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-------~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
++++..|+.-.+..|+.++..+ -.+|..-..|... ..++..++.-+ ..+ .....+++.++-..||..
T Consensus 195 LrIme~gSElSktvaifI~qki---l~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~--~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKI---LGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG--STRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHheeecCC
Confidence 9999999999999999999988 5566555544321 22334444333 334 567888888888888877
Q ss_pred cccHHHH
Q 014817 273 KQTRYKA 279 (418)
Q Consensus 273 ~~n~~~i 279 (418)
...|..+
T Consensus 270 p~aR~lL 276 (315)
T COG5209 270 PHARALL 276 (315)
T ss_pred HhHHHHH
Confidence 7666544
No 252
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.48 E-value=0.22 Score=39.80 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=41.5
Q ss_pred CcccCcCccccccCCeec----CCCCcccHHHHHHHHH--cCCCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPVTV----CTGQTYDRPSIESWVA--TGNTTCPVTRSPLTDF 65 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~----~~g~~~~r~~i~~~~~--~~~~~cp~~~~~l~~~ 65 (418)
.-+.|-||++.-.|.--+ .||+..|-.|-...|+ .-++.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 457899999999999977 3899999999998665 3478899999888643
No 253
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.45 E-value=1.7 Score=44.32 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCc
Q 014817 206 HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGA 284 (418)
Q Consensus 206 ~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~ 284 (418)
.|+...+..|+..|.... ...++ +. ..+|.++++|.++. +..++..|.+.|..+|... +...++
T Consensus 33 kg~~k~K~Laaq~I~kff--k~FP~----l~--~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kv----- 97 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFF--KHFPD----LQ--EEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKV----- 97 (556)
T ss_dssp GS-HHHHHHHHHHHHHHH--CC-GG----GH--HHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHH-----
T ss_pred cCCHHHHHHHHHHHHHHH--hhChh----hH--HHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHH-----
Confidence 467889999999998884 33433 22 35899999999998 8999999999999999864 566664
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh---cCChHHHHHHHHHHHH
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL---KISDRATEYAAGALAA 351 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~---~~~~~~~~~A~~~L~~ 351 (418)
+..|+++|.+.+..-...+-.+|..|...+. .+.+..+...+. ++++.+++.++..|..
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 5679999987665444444444443332111 122223333333 4566677777766643
No 254
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.32 E-value=18 Score=36.72 Aligned_cols=272 Identities=11% Similarity=0.045 Sum_probs=152.4
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcC-hHHHHH-HHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHN-VRAILS-QVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g-~i~~Lv-~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
..++....... +...+.+++..+...|.. +.....+...+ ++-.++ .-++... +..++..|+.+|..-..
T Consensus 136 ~~mv~nvg~eq-p~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et------~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 136 EEMVRNVGDEQ-PVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNET------TSAVRLAALKALMDSLM 207 (858)
T ss_pred HHHHHhccccC-chHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCc------hHHHHHHHHHHHHHHHH
Confidence 33444443332 333568899999988853 23333333333 222333 2333332 56788888888875211
Q ss_pred C------hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817 183 T------ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP 256 (418)
Q Consensus 183 ~------~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 256 (418)
. .++.|..+ +...++.-+..+.+++..+-..|..+. ...-+.-..+.+ ......+.+.+++. +.
T Consensus 208 fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim--~LyY~fm~~ymE-~aL~alt~~~mks~--nd 277 (858)
T COG5215 208 FVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIM--MLYYKFMQSYME-NALAALTGRFMKSQ--ND 277 (858)
T ss_pred HHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHhcCc--ch
Confidence 1 11223333 455566667778999998888888885 344444444433 22333344556666 77
Q ss_pred hhhHHHHHHHHHHcccc---------------c--cHHHHHHcCchHHHHHHhcC-C-----C-cccHHHHHHHHHHHhc
Q 014817 257 RGLKVGIKALFALCLVK---------------Q--TRYKAVAAGAAETLVDRLAD-F-----D-KCDAERALATVELLCR 312 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~---------------~--n~~~i~~~G~v~~Lv~lL~~-~-----~-~~~~~~a~~~L~~L~~ 312 (418)
++...|..--..+|... . +-.+..-++++|.|+.+|.. + | =+....|..+|...+.
T Consensus 278 ~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq 357 (858)
T COG5215 278 EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ 357 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH
Confidence 77777776655554321 1 11222235689999999963 1 1 1333444445544332
Q ss_pred CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHH
Q 014817 313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLL 392 (418)
Q Consensus 313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 392 (418)
. ....+++ .++.-+=+.+.+++-..++.|+.++..+-.+..+....-+=..+++.+...+. +..--+++.++|.+
T Consensus 358 ~--~gd~i~~--pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~ 432 (858)
T COG5215 358 L--KGDKIMR--PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCF 432 (858)
T ss_pred H--hhhHhHH--HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHH
Confidence 1 1122332 12222333456688888999999999988754443333333456677766664 43667888999999
Q ss_pred HHHHhhC
Q 014817 393 KLLRDSW 399 (418)
Q Consensus 393 ~~l~~~~ 399 (418)
..++.+-
T Consensus 433 g~iad~v 439 (858)
T COG5215 433 GAIADHV 439 (858)
T ss_pred HHHHHHH
Confidence 8888763
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.31 E-value=1.6 Score=36.20 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=64.1
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 325 LTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 325 g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.++..|.+.|.++++.++-.|+.+|-.+... ......++.+.+.+..|..++....++.+|+++..+++.-+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3566788888889999999999998888873 467888899999999999999766689999999999998887654
No 256
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.11 Score=48.93 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.1
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
+.|-.-.|-||.+-.++.+-+||||+.| |+.-... ...||+|++.+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 4455567999999999999999999998 6655443 35599998654
No 257
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.29 E-value=3.2 Score=38.42 Aligned_cols=169 Identities=22% Similarity=0.180 Sum_probs=101.7
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcC--hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHN--VRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
...++..+..... +.++-+++-+|-++.. +.....+...+ +...+..++...... .++..+-.+++++.|+.
T Consensus 65 ~~~~~~~~~~Wp~--~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~NlF 138 (268)
T PF08324_consen 65 LILLLKILLSWPP--ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLANLF 138 (268)
T ss_dssp HHHHHHHHCCS-C--CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC--ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHHHhh
Confidence 4455555555432 2467888888777654 44444454432 345555665443211 14667778899999998
Q ss_pred CChhHHHhhcccC-C-chHHHHHHhcCC----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCC
Q 014817 182 LTETECMEIASDA-D-KITSLSSLLFHS----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSY 255 (418)
Q Consensus 182 ~~~~~~~~~i~~~-g-~i~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 255 (418)
.+. ..+..+.+. + .+...+..+... +..++..++.++.|++ ...-..+..--.....+..+++.+.....+
T Consensus 139 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls--v~~~~~~~~~~~~~~ll~~i~~~~~~~~~d 215 (268)
T PF08324_consen 139 SHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS--VLLHKNRSDEEWQSELLSSIIEVLSREESD 215 (268)
T ss_dssp TSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH--HHHHHCTS-CCHHHHHHHHHHHHCHCCHTS
T ss_pred CCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH--HHHHhcCCChHHHHHHHHHHHHHhccccCC
Confidence 776 667766654 3 344444444444 6899999999999994 222221211100123567777754443228
Q ss_pred hhhhHHHHHHHHHHccccccHHHHHH
Q 014817 256 PRGLKVGIKALFALCLVKQTRYKAVA 281 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~i~~ 281 (418)
+++...++.||.+|...+.......+
T Consensus 216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 216 EEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHH
Confidence 99999999999999977766666655
No 258
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.09 E-value=1.7 Score=36.10 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|.+.++.++..|+.+|-.+.. .......++.+.+.+..|..++....+..++++...+++..+..-.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 46678888888999999999999999887 4456888899999999999999775589999999999998876543
No 259
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.07 E-value=8.1 Score=39.26 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=75.8
Q ss_pred cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHH
Q 014817 282 AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERC 359 (418)
Q Consensus 282 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~ 359 (418)
+|.+..+++-+.+.+..++..++.+|+.+..+-......... |.+..|.+.+....+.++..|+.+|..+-. +++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N-~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN-GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 456666777777888899999999999888654444444443 778888888888899999999999877654 45554
Q ss_pred HHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817 360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL 390 (418)
Q Consensus 360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~ 390 (418)
+. ...|+.+++.++++++|+.|..
T Consensus 169 ~~-------~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 RI-------VNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HH-------HHHHHHHHhcCcHHHHHHHHHH
Confidence 43 4577888888878999987643
No 260
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.01 E-value=18 Score=36.00 Aligned_cols=217 Identities=15% Similarity=0.104 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCCChh---HHHhhcccCCchHHHHHHhcCCC-------HHHHHHHHHHHHHHHhcccchhhhh--Hhhch
Q 014817 171 HESLALLVMFPLTET---ECMEIASDADKITSLSSLLFHSS-------IEVRVNSAALIEIVLAGMRSQELRA--QISNL 238 (418)
Q Consensus 171 ~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~Lv~~L~~~~-------~~~~~~a~~~L~~L~~~s~~~~~~~--~i~~~ 238 (418)
-.|+-....+..+++ -+|+.+.++=+.+.+-++|.+++ .-.+..+..+|.-+ ...++... .+
T Consensus 29 fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF---C~~pElAsh~~~--- 102 (698)
T KOG2611|consen 29 FAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF---CRVPELASHEEM--- 102 (698)
T ss_pred HHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH---hCChhhccCHHH---
Confidence 333333334444432 35777777777888888886542 33455677777777 55554332 22
Q ss_pred hhhHHHHHHHhhcCCCChh------hhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHh
Q 014817 239 DEIFEGVIDILKNLSSYPR------GLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLC 311 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~------~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~ 311 (418)
-..||.|..++..+. +++ ....+-.+|..++........++..|+++.+-++-.-.+. .-++.++.++..+.
T Consensus 103 v~~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 103 VSRIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHhhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 236899999998764 444 7889999999999999999999999999999876543322 23344555554443
Q ss_pred ----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CC----HHHHHHHHhcChHHHHHHHHhhCCC
Q 014817 312 ----RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--AS----ERCQRDAVSAGVLTQLLLLVQSDCT 381 (418)
Q Consensus 312 ----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~----~~~~~~~~~~g~i~~L~~ll~~~~~ 381 (418)
..++.-..+..- |..+..=+...+...+-..+.+|..+-. ++ +..+...+-.....-+..+|++.-.
T Consensus 182 ~~~~cw~e~~~~flal---i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~~kv~ 258 (698)
T KOG2611|consen 182 SKLDCWSETIERFLAL---IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQNKVA 258 (698)
T ss_pred HhcccCcCCHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHhcccC
Confidence 223322222221 2222222323444556666777664333 11 1122222333334445556655445
Q ss_pred HHHHHHHHHHHHHHHh
Q 014817 382 DRAKRKAQLLLKLLRD 397 (418)
Q Consensus 382 ~~~~~~A~~~L~~l~~ 397 (418)
+..|.-|..+..++..
T Consensus 259 p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 259 PSQRLPALILAANMMH 274 (698)
T ss_pred chhcChHHHHHHHHHH
Confidence 6666666665555544
No 261
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.78 E-value=1.5 Score=31.77 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817 212 RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG 283 (418)
Q Consensus 212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G 283 (418)
.+.+.|++.++ ...+..-..+- ..++++.++++.++.+ ...+|..+..+|.-++.+.+....+.+.|
T Consensus 4 lKaaLWaighI---gss~~G~~lL~-~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHI---GSSPLGIQLLD-ESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhH---hcChHHHHHHh-hcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46789999999 66666666664 3679999999999875 67899999999999999998888777665
No 262
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.64 E-value=0.71 Score=27.06 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+++.++.+++++ ++++|..|+..|..+.++
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 367888999777 999999999999998764
No 263
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.49 E-value=2.3 Score=36.20 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=71.8
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~ 273 (418)
..+..+..+|++.+.+.|..++..+...+ .... .+.+.. ..-.+..|+.+|+..+ .+.+.+.++.+|..|...-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~---~~~~-~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTV---EQCS-WEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999998883 3322 233322 2348889999999874 6778888999888886543
Q ss_pred cc----HHHHHH---cCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 274 QT----RYKAVA---AGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 274 ~n----~~~i~~---~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
.. ..++.- .+.++.++.++.. ....+.++.+|..|-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 32 333322 1334444444443 456677777777665
No 264
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.43 E-value=5.7 Score=35.30 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcccchhhhhHhhchhh---hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--cHHHHHHcCchH
Q 014817 212 RVNSAALIEIVLAGMRSQELRAQISNLDE---IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAE 286 (418)
Q Consensus 212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g---~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~ 286 (418)
..+|...|.-+ +.+++.|..+.. .- .+-+.+....+....+-.+-.+++++..|..+++ ....+....+||
T Consensus 117 vcnaL~lLQcl---aShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 117 VCNALNLLQCL---ASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHH---hcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 34566677777 788888888754 22 2223333333332134567789999999998875 455667789999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-------CChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHH
Q 014817 287 TLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-------LTVPLLVKTI-LKISDRATEYAAGALAALCSASER 358 (418)
Q Consensus 287 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~ 358 (418)
.+++++..++.-.+.-+..++..+..++.|-+.+.+.- ..+..++.-+ +.++-+..++++++-..+|. +++
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~ 271 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPH 271 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHh
Confidence 99999988776667778888888888888777665421 1222223222 33777888999999888887 777
Q ss_pred HHHHHH
Q 014817 359 CQRDAV 364 (418)
Q Consensus 359 ~~~~~~ 364 (418)
.|....
T Consensus 272 aR~lL~ 277 (315)
T COG5209 272 ARALLS 277 (315)
T ss_pred HHHHHh
Confidence 666443
No 265
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.37 E-value=13 Score=33.56 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=107.2
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
+++.+...+..|..++.++. ....-++..|+.+...++.+.+..+...+..+- ..++. . -+.+..+
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw--~~~~r----~---f~~L~~~ 79 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLW--KANDR----H---FPFLQPL 79 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHH--HhCch----H---HHHHHHH
Confidence 68888999999998887651 222334566666677777777666677777772 11211 1 1345554
Q ss_pred HHHh--h------cCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhH
Q 014817 246 IDIL--K------NLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRL-ADFDKCDAERALATVELLCRIPAG 316 (418)
Q Consensus 246 v~lL--~------~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~ 316 (418)
+..+ + ++....+.......++..+|...+++. ...++.+...| .+.+...+..++..|..|+.
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~---- 151 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALAPLCE---- 151 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----
Confidence 4441 1 111123445555678888888776622 34677888888 67677788899999999993
Q ss_pred HHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 317 CAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 317 ~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
..+++-...-..+.+.+.. ..+.+.+.-+..+..+.. .-+..........++..+.++..+.
T Consensus 152 -~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 152 -AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred -HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 2233222233344444432 233333322222222222 1122334445566777777777544
No 266
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=15 Score=39.96 Aligned_cols=195 Identities=16% Similarity=0.081 Sum_probs=124.7
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
++++.|..-|++.+..++..|++-+..++ ...+ ..++ ..+|...+.++.... ++..-..|+-+|..|+...=
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt--~rlp---~~La--d~vi~svid~~~p~e-~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVT--SRLP---PELA--DQVIGSVIDLFNPAE-DDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHH--ccCc---HHHH--HHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHhcCC
Confidence 56788888888899999999999999995 3333 2332 247777777666553 46777789999999987654
Q ss_pred cHHHHHHcCchHHHHHHhc--------CCCcccHHHHHHHHHHHhcCHhH--HHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817 275 TRYKAVAAGAAETLVDRLA--------DFDKCDAERALATVELLCRIPAG--CAEFAEHALTVPLLVKTILKISDRATEY 344 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~--------~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~i~~Lv~~l~~~~~~~~~~ 344 (418)
-....++ .++|.++.-|. +....++..|+.+...+++..+- -+-+... -.-..|...+...+-.++..
T Consensus 413 Llps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 413 LLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRA 490 (1133)
T ss_pred cchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHH
Confidence 3333322 26677776663 11346788899999888854322 1222221 12224444556677788888
Q ss_pred HHHHHHHHhcC--CH-----------------------HH-HHHHHhcChHHHHHHHH-----hhCCCHHHHHHHHHHHH
Q 014817 345 AAGALAALCSA--SE-----------------------RC-QRDAVSAGVLTQLLLLV-----QSDCTDRAKRKAQLLLK 393 (418)
Q Consensus 345 A~~~L~~l~~~--~~-----------------------~~-~~~~~~~g~i~~L~~ll-----~~~~~~~~~~~A~~~L~ 393 (418)
|..|+.....+ +- .. +....-.|...++++-+ .++ +..+|+.|++.|.
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~ 569 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHH
Confidence 88888776652 21 01 11112245555555444 345 8999999999999
Q ss_pred HHHhhCC
Q 014817 394 LLRDSWP 400 (418)
Q Consensus 394 ~l~~~~~ 400 (418)
.|+..+.
T Consensus 570 ~Ls~~~p 576 (1133)
T KOG1943|consen 570 KLSLTEP 576 (1133)
T ss_pred HHHHhhH
Confidence 9887654
No 267
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.32 E-value=0.53 Score=46.16 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch------hhhhHhhchhhhH
Q 014817 169 LAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ------ELRAQISNLDEIF 242 (418)
Q Consensus 169 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~------~~~~~i~~~~g~i 242 (418)
+...|..++..+..+..-......-..+...+...|.+.....|+.++|++.|++. +..+ ...+.+.. -.+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd-AL~~~~Ps~~s~~eR~sg--~ll 483 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD-ALIVNMPTPDSFQERFSG--LLL 483 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH-HHHcCCCCchHHHHHHHH--HHH
Confidence 44555566655555542222222234556667777777788999999999999942 1111 12222311 134
Q ss_pred HHHHHHhhcC-CCChhhhHHHHHHHHHHccccc----cHHHHHHcCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhH
Q 014817 243 EGVIDILKNL-SSYPRGLKVGIKALFALCLVKQ----TRYKAVAAGAAETLVDRL-ADFDKCDAERALATVELLCRIPAG 316 (418)
Q Consensus 243 ~~Lv~lL~~~-~~~~~~~~~a~~aL~~L~~~~~----n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~ 316 (418)
..+++..... ..+..++.+|.++|.|+...-+ .-......|.+..++... ..+...++=+++.++.||..++..
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 4444443321 1156789999999999986533 222223344444444432 344567888999999999988765
Q ss_pred HHHHHhccC-ChHHHHHHHhc-CChHHHHHHHHHHHHHhc
Q 014817 317 CAEFAEHAL-TVPLLVKTILK-ISDRATEYAAGALAALCS 354 (418)
Q Consensus 317 ~~~i~~~~g-~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~ 354 (418)
+-+-..-+| +.+.|..++.. .|-+++-+|+.+|..-..
T Consensus 564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 322222123 44556666554 788899999999877665
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.07 E-value=2.4 Score=34.64 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=62.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWPQ 401 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~~ 401 (418)
++..|-+.|.++++.++..|+.+|-.+... .+....++.....+..|+.++.. ..+..+|+++..++.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456777888889999999999999998883 44577888887888889999965 45789999999999998886553
No 269
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=28 Score=36.63 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=19.3
Q ss_pred hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
|.+--.+.+|... +-+++..++.....|+.+
T Consensus 317 ~l~mDvLrvLss~--dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 317 GLIMDVLRVLSSP--DLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHcCcc--cccHHHHHHHHHHhhhhh
Confidence 4444555666666 667777777776666544
No 270
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.96 E-value=16 Score=38.02 Aligned_cols=116 Identities=10% Similarity=0.006 Sum_probs=77.4
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
.|.+..|++-..+. +..|+...+.+|..+.-.. ..+...+-.+....+..-|..-.+.+|..|+.+|..+
T Consensus 84 ~~~f~hlLRg~Esk-------dk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl-- 153 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-------DKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL-- 153 (892)
T ss_pred HHHHHHHHhcccCc-------chhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH--
Confidence 44555555555554 4678999999888776433 2233334456677888888888899999999999999
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV 280 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~ 280 (418)
-.++. -+ ...+...|+.++++++ +++++.+| |.|++.......-++
T Consensus 154 -Q~d~~-de----e~~v~n~l~~liqnDp-S~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 154 -QGDPK-DE----ECPVVNLLKDLIQNDP-SDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred -hcCCC-CC----cccHHHHHHHHHhcCC-cHHHHHHH---HHhhccCcccchhHH
Confidence 42221 11 1236788999999886 88898865 456665555444444
No 271
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.94 E-value=10 Score=35.67 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=103.3
Q ss_pred CchHHHH-HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817 195 DKITSLS-SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 195 g~i~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~ 273 (418)
+.+..|+ ..+++.++.+|+.|...|+-. +.-+. .++. ..++.+...++.+ ++.++..|+.+|..+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~---~Lld~---~~a~--~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLC---CLLDK---ELAK--EHLPLFLQALQKD--DEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHhCh---HHHH--HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc
Confidence 4455554 677888999999999999998 44443 3332 3578888888776 8999999999999997543
Q ss_pred c--cHHH-------HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc----CChH
Q 014817 274 Q--TRYK-------AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK----ISDR 340 (418)
Q Consensus 274 ~--n~~~-------i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~----~~~~ 340 (418)
. .... .-....+..+...|.+.+++++..++.-+..|--.+.... . ...+..|+-.-.+ ++..
T Consensus 96 g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 96 GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHH
Confidence 2 1111 1224566777778877777888888877777663322111 0 1222233333322 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
.++.=...+-..|..+++. +..+....++.+..+....
T Consensus 172 LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 172 LRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 4433333344445544444 4566677777776666543
No 272
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.85 E-value=0.11 Score=53.32 Aligned_cols=65 Identities=17% Similarity=0.366 Sum_probs=46.3
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHH--cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA--TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD 79 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~--~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~ 79 (418)
..+..||||.....+|+.+.|.|.||+.|+...|. .+...||+|+.............-.++++.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 45678999999999999999999999999998654 335679999855543333223333344443
No 273
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.59 E-value=2 Score=35.48 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=61.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHH---HHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDR---AKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|.++++.++..|+.+|-.+.. ..+....++.....+..|..++....... +|+++..++.......+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 35568888888999999999999988888 34678888888899999999997654544 89999999988887654
No 274
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.53 E-value=26 Score=35.68 Aligned_cols=85 Identities=9% Similarity=0.117 Sum_probs=48.7
Q ss_pred HHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH
Q 014817 124 ALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL 203 (418)
Q Consensus 124 Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~ 203 (418)
.+++.-.+.++++..+.+++ |.|-.-|++- ...|.-.++.++..++... ....+. .-.+..|-.+
T Consensus 247 lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k-------~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~f 311 (898)
T COG5240 247 LVRATVELLKENSQALLQLR-----PFLNSWLSDK-------FEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTF 311 (898)
T ss_pred hHHHHHHHHHhChHHHHHHH-----HHHHHHhcCc-------chhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHH
Confidence 44445555555555444433 4444444433 2456677777666655422 011111 1235666677
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 014817 204 LFHSSIEVRVNSAALIEIVL 223 (418)
Q Consensus 204 L~~~~~~~~~~a~~~L~~L~ 223 (418)
|++.....|-.|.++|..|+
T Consensus 312 L~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 312 LKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 77888889999999999993
No 275
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.23 Score=46.70 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=37.2
Q ss_pred ccCcCccccccCCeecCCCCcc-cHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTY-DRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
-.|=||+.--+|-+++||=|.. |..|-+...-+ +++||+|++++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchH
Confidence 4799999999999999999864 68887765433 678999999864
No 276
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.27 Score=37.34 Aligned_cols=27 Identities=19% Similarity=0.577 Sum_probs=23.9
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817 34 CTGQTYDRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 34 ~~g~~~~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
.|+|.|--.||.+|++. ...||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999996 7889998764
No 277
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=21 Score=40.47 Aligned_cols=235 Identities=14% Similarity=0.120 Sum_probs=126.9
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
.||.|.+.=.++ +..|+..-..+=.-|..+. +..+- -...+.-|+.-|.+....+|+.++.+|..|..
T Consensus 999 LIPrLyRY~yDP-------~~~Vq~aM~sIW~~Li~D~---k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 999 LIPRLYRYQYDP-------DKKVQDAMTSIWNALITDS---KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred hhHHHhhhccCC-------cHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 345554444444 5667765555433444332 22221 23556777777777889999999999999986
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH---HHHHHccc--c---ccHHHHHHcCchHHHHH--HhcC
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK---ALFALCLV--K---QTRYKAVAAGAAETLVD--RLAD 294 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~---aL~~L~~~--~---~n~~~i~~~G~v~~Lv~--lL~~ 294 (418)
+-..++..+.+ ......+.+..++= .+.++++|-. +|..|+.. + ..+..-+-..++|.|++ .+ +
T Consensus 1069 g~~~~~~~e~l---pelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1069 GRPFDQVKEKL---PELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred CCChHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c
Confidence 65666666666 34677777777765 5667766544 55555421 1 12222222335555553 22 3
Q ss_pred CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC-----------hHHHHHHHHHHHH-HhcCCHHH--H
Q 014817 295 FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS-----------DRATEYAAGALAA-LCSASERC--Q 360 (418)
Q Consensus 295 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~-----------~~~~~~A~~~L~~-l~~~~~~~--~ 360 (418)
.-.+++.-++.+|.-|+.+....-+-.- +..||.|+.....-. ......|+..+.. +++++|-. .
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 3457788899999999965443222111 234555555443322 2223444444433 33344321 1
Q ss_pred H-------HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 361 R-------DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 361 ~-------~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
. .-+-+..++.+.+++..+-.-..|-.++..+-.|...
T Consensus 1222 ~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1222 NKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 1 1112346777778876543344444555555555544
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.87 E-value=3.4 Score=33.78 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=61.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHH-HHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDR-AKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~A~~~L~~l~~~~~ 400 (418)
++..|-+.|.++++.++..|+.+|-.+... ......++.+.+.+..|..++....+.. +++++..++..-...-.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 455678888889999999999999888873 5678888889999999999997654444 99999999988887544
No 279
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=0.33 Score=48.93 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=30.9
Q ss_pred CCcccCcCccccc----cCCeecCCCCcccHHHHHHHHHcCCCCCC
Q 014817 15 PYHFRCPISLELM----CDPVTVCTGQTYDRPSIESWVATGNTTCP 56 (418)
Q Consensus 15 ~~~~~Cpi~~~~~----~dPv~~~~g~~~~r~~i~~~~~~~~~~cp 56 (418)
.+.++|+||...| ..||.+-||||.|+.|.+.-.. .+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 3457999996665 5799999999999999998654 3466
No 280
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.89 E-value=0.43 Score=44.03 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHc
Q 014817 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT 50 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~ 50 (418)
.-.|+.|+|++++|++||+. .-|+-|.+..|-+|+-.
T Consensus 31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 34578999999999999976 58999999999999864
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.82 E-value=1.7 Score=38.97 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHhcCHhHHHHHHhcc------CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHH-HHHHhcChH
Q 014817 298 CDAERALATVELLCRIPAGCAEFAEHA------LTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQ-RDAVSAGVL 369 (418)
Q Consensus 298 ~~~~~a~~~L~~L~~~~~~~~~i~~~~------g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~g~i 369 (418)
.-+.-|+.+|..|+-.+.|...+.... ..+..|++++.. ++...+|-|+-+|.++|.++.... ....+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 346789999999997777766655431 234456666644 788899999999999999766554 566678999
Q ss_pred HHHHHHHhhC
Q 014817 370 TQLLLLVQSD 379 (418)
Q Consensus 370 ~~L~~ll~~~ 379 (418)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999654
No 282
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.80 E-value=0.28 Score=51.56 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=35.7
Q ss_pred ccCcCcccccc-----CCeec--CCCCcccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMC-----DPVTV--CTGQTYDRPSIESWVA-TGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~ 63 (418)
--|+||=-++. =|--. -|.|.|--+|+-+|+. .++.+||.|+..++
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 36999988876 24433 2789999999999997 56788999996653
No 283
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=2 Score=44.25 Aligned_cols=101 Identities=24% Similarity=0.128 Sum_probs=76.8
Q ss_pred cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHH
Q 014817 282 AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERC 359 (418)
Q Consensus 282 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~ 359 (418)
+|.+..|++-..+.+..++-.++.+|..|..+...+..-+-. +....+...+....+.++.+|+.+|..+=. .+++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 445556666666778889999999999999755555555553 677788888888999999999999988764 2332
Q ss_pred HHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817 360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL 390 (418)
Q Consensus 360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~ 390 (418)
..++..+..+++.++++++|+.|..
T Consensus 162 ------~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 162 ------CPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred ------ccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3467888999998889999988644
No 284
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.61 E-value=13 Score=42.04 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc--HHHHHHcCchHHHHH
Q 014817 213 VNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT--RYKAVAAGAAETLVD 290 (418)
Q Consensus 213 ~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n--~~~i~~~G~v~~Lv~ 290 (418)
..+.++...| +...+....+ .+.+..++..|..+ ...++..|+++|.++...+.. ....+.. .+-.
T Consensus 795 ~~a~li~~~l---a~~r~f~~sf---D~yLk~Il~~l~e~--~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~ 862 (1692)
T KOG1020|consen 795 DDAKLIVFYL---AHARSFSQSF---DPYLKLILSVLGEN--AIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHG 862 (1692)
T ss_pred hhHHHHHHHH---HhhhHHHHhh---HHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHH
Confidence 4566666666 3443333333 56888888889877 789999999999999877652 1222333 3344
Q ss_pred HhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChH
Q 014817 291 RLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVL 369 (418)
Q Consensus 291 lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i 369 (418)
-+.+....+++.|+.++..-. .+++.-.+..+ .+.+.+...+-.++.++++++..+|...|..-. .+
T Consensus 863 R~~DssasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~ 930 (1692)
T KOG1020|consen 863 RLNDSSASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFSK------IV 930 (1692)
T ss_pred hhccchhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HH
Confidence 555667789999999997433 45665555544 355566778889999999999999996665433 23
Q ss_pred HHHHHHHhh-CC-CHHHHHHHHHHHHHH
Q 014817 370 TQLLLLVQS-DC-TDRAKRKAQLLLKLL 395 (418)
Q Consensus 370 ~~L~~ll~~-~~-~~~~~~~A~~~L~~l 395 (418)
..+.++|.. +. ...+++.+..++..+
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 444444432 21 233677766655443
No 285
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=11 Score=39.46 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=66.0
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH------
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL------ 269 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L------ 269 (418)
.+|.+..-|.+.+.-+|.+|..+++.+ ...- ..+. ..+-+.+-+.|.... ++..+++|..-|...
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsI---yk~~---~~L~--pDapeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSI---YKNF---EHLI--PDAPELIESFLLTEQ-DPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhH---Hhhh---hhhc--CChHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHH
Confidence 466667777888999999999999988 5441 1222 123333444444443 677777776544332
Q ss_pred ---cccc-------c-cHHHH-------------HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817 270 ---CLVK-------Q-TRYKA-------------VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 270 ---~~~~-------~-n~~~i-------------~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 320 (418)
..+- + -..-+ .++-.+..+..+|.+.+..+.-+|++.|..|+..+..-...
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A 280 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA 280 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH
Confidence 2211 1 00001 12334666777777666666667777777776655544433
No 286
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.36 E-value=26 Score=38.90 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=133.7
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
+++.+...++.-. ..+.+..|+..|..|+..-+ +.+ -..++|-+|.++......+|..|..+|..+.
T Consensus 423 ~vs~lts~IR~lk------~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L-- 490 (1431)
T KOG1240|consen 423 FVSVLTSCIRALK------TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELL-- 490 (1431)
T ss_pred eHHHHHHHHHhhh------cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHH--
Confidence 3455555554432 35667888888888775321 211 1245899999999999999999999998886
Q ss_pred ccchh---hhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc------------------ccccH--------
Q 014817 226 MRSQE---LRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL------------------VKQTR-------- 276 (418)
Q Consensus 226 s~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~------------------~~~n~-------- 276 (418)
+...+ .-..|.. +=.+|.|-+++.+.+ ...++..=+..|..||. ++.|-
T Consensus 491 ~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~-~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~ 568 (1431)
T KOG1240|consen 491 ALVRDIPPSDANIFP-EYLFPHLNHLLNDSS-AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNY 568 (1431)
T ss_pred hhccCCCcccchhhH-hhhhhhhHhhhccCc-cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccccccccc
Confidence 32221 1112323 237788888888742 34445444444544432 11111
Q ss_pred ---HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc----------------------CHhHHHHHHh---------
Q 014817 277 ---YKAVAAGAAETLVDRLADFDKCDAERALATVELLCR----------------------IPAGCAEFAE--------- 322 (418)
Q Consensus 277 ---~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----------------------~~~~~~~i~~--------- 322 (418)
...+-.++=+..+.+|..+++.++...+..|.-||. +..-|-++.+
T Consensus 569 ~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 569 NTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred chHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 000111222233345555444455555555555552 2223434333
Q ss_pred -----ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 323 -----HALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 323 -----~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..+.+|.|.+-|..+.+.+-..|+.+|..|+. ..-.++..+ -.+++-..-+|-++ +.=+|+.+..++-...+
T Consensus 649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik-~~ll~K~~v-~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK-LGLLRKPAV-KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH-hcccchHHH-HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 12466777777777888999999999999998 222222110 11222233334345 88899999998888777
Q ss_pred hCC
Q 014817 398 SWP 400 (418)
Q Consensus 398 ~~~ 400 (418)
.+.
T Consensus 726 ~ls 728 (1431)
T KOG1240|consen 726 QLS 728 (1431)
T ss_pred hhh
Confidence 553
No 287
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.21 E-value=1 Score=44.31 Aligned_cols=166 Identities=14% Similarity=0.045 Sum_probs=96.7
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc----cccHHHHHH-c-C-chHHHHHHhcC---C
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV----KQTRYKAVA-A-G-AAETLVDRLAD---F 295 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~----~~n~~~i~~-~-G-~v~~Lv~lL~~---~ 295 (418)
-.+...+...+-...+...+...|.+. .-..+..++|++.|++.. -.+.....+ . | .+..++..-.. .
T Consensus 419 VLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad 496 (728)
T KOG4535|consen 419 VLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASAD 496 (728)
T ss_pred EeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345554444433244566666777765 567888999999999632 123222222 1 1 23333333221 2
Q ss_pred CcccHHHHHHHHHHHhcCHh-----HHHHHHhccCChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHHH--HHHHHhcC
Q 014817 296 DKCDAERALATVELLCRIPA-----GCAEFAEHALTVPLLVKTI-LKISDRATEYAAGALAALCSASERC--QRDAVSAG 367 (418)
Q Consensus 296 ~~~~~~~a~~~L~~L~~~~~-----~~~~i~~~~g~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~~~~g 367 (418)
+..+..++..+|.++..--+ +-..+.+ |.+..+.... ......++=+|+-++.||.+ ++.. +..=+..-
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk-n~a~~lq~~~wA~~ 573 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFK-NPALPLQTAPWASQ 573 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhc-CccccccCCCchHH
Confidence 35678888888888874222 1122222 2222222222 12677889999999999998 3332 22223345
Q ss_pred hHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
+++.|..++.+..+-++|-+|+.+|..-.
T Consensus 574 ~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 574 AFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 78888888877668888888888876443
No 288
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.17 E-value=12 Score=39.80 Aligned_cols=175 Identities=10% Similarity=-0.007 Sum_probs=112.3
Q ss_pred HHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCch--HHHHHHhcCC
Q 014817 218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAA--ETLVDRLADF 295 (418)
Q Consensus 218 ~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v--~~Lv~lL~~~ 295 (418)
+|+++. ..+.+++..+.. .|++..+...++.-. +.+....+.+.|.|++...+.+......--+ ..+-.++..-
T Consensus 494 ~l~~~t--~~~~~~C~~~l~-~~g~~~~~~~l~~f~-~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w 569 (699)
T KOG3665|consen 494 ALWNIT--DENPETCKEFLD-NGGMKLLFKCLESFD-NEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW 569 (699)
T ss_pred HHHhhh--cCCHHHHHHHHh-cccHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 788886 678888888866 789999999999774 7889999999999999776543222111111 1222233333
Q ss_pred Cc-ccHHHHHHHHHHHhcCHh----------HHHHHHhc-------------cCChHH-HHHHHhc-CChHHHHHHHHHH
Q 014817 296 DK-CDAERALATVELLCRIPA----------GCAEFAEH-------------ALTVPL-LVKTILK-ISDRATEYAAGAL 349 (418)
Q Consensus 296 ~~-~~~~~a~~~L~~L~~~~~----------~~~~i~~~-------------~g~i~~-Lv~~l~~-~~~~~~~~A~~~L 349 (418)
+. +....++++|+.+..+.+ ..+.+.+. ...+.+ +..++.. ..+..+-+|++++
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti 649 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTI 649 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHH
Confidence 33 556677777777765321 11111110 012223 4444433 6777889999999
Q ss_pred HHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 350 AALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 350 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
.++...+++..+.+.+.|+++.+..+-........++.+..++.+..
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 650 KNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 99998777788888899999888766532215556666666655443
No 289
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=50 Score=35.85 Aligned_cols=259 Identities=11% Similarity=0.081 Sum_probs=137.7
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccc-ccCCChhHHHHHHHHHhcCCC---ChhHHHhhcccCCch
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINV-KTASSPELAHESLALLVMFPL---TETECMEIASDADKI 197 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~g~i 197 (418)
..|+..+..+++.. .+..+ .|+++.++++|.+..+. ....++.-.+.|+.+++.|+. .....+..+ +.=.+
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHH
Confidence 56777777776542 12222 47889999999743221 111256667778888777651 111122222 22234
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-
Q 014817 198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR- 276 (418)
Q Consensus 198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~- 276 (418)
..+...+++...-.|..|||++..+ +. .+.+..-.. ..+++.....|.+.. +-.++..|+-||..+-++.+-.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~---~~-~df~d~~~l-~~ale~t~~~l~~d~-~lPV~VeAalALq~fI~~~~~~~ 538 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQF---SS-IDFKDPNNL-SEALELTHNCLLNDN-ELPVRVEAALALQSFISNQEQAD 538 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHH---Hh-ccCCChHHH-HHHHHHHHHHhccCC-cCchhhHHHHHHHHHHhcchhhh
Confidence 5555666788888999999999999 32 222222211 347777778777442 6788999999999887776533
Q ss_pred HHHHH--cCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHH----HHHHhccCChHHHHHHHhc------CChHHHH
Q 014817 277 YKAVA--AGAAETLVDRLADFDKCDAERALATVELLC-RIPAGC----AEFAEHALTVPLLVKTILK------ISDRATE 343 (418)
Q Consensus 277 ~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~----~~i~~~~g~i~~Lv~~l~~------~~~~~~~ 343 (418)
..+-. -+.++.|+.+.+.-+.+.. ..++..+. ..++.- -.++. .....+++++.+ ++..-+-
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End~L---t~vme~iV~~fseElsPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~i 613 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVENDDL---TNVMEKIVCKFSEELSPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAI 613 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHhhchhHHHHHH--HHHHHHHHHHhccCCCCccchHHHH
Confidence 33322 2445555555554332222 22333332 222211 12222 234456666663 3344456
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 344 YAAGALAALCS------ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 344 ~A~~~L~~l~~------~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.|.++|..+.. ..++..+. .+.-+.+.+-.+|+++ -...-+.+..++..+.-.
T Consensus 614 aA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~ 672 (1010)
T KOG1991|consen 614 AASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFL 672 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence 67777777655 12222221 1223344444445555 444555555555555444
No 290
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.93 E-value=4.7 Score=33.28 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=61.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++..+.+.|.+.++.++..|+.+|-.+.. ....+..++.+.+.+..|+.++.. ..+..+|++...+++.-+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46678888888999999999999999887 445678889999999999999953 246899999999888877643
No 291
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=0.7 Score=43.55 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=46.1
Q ss_pred cCcCcccccc------CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC--CC---CCCcccHHHHHHHHHH
Q 014817 19 RCPISLELMC------DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL--TD---FTLIPNHTLRRLIQDW 80 (418)
Q Consensus 19 ~Cpi~~~~~~------dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l--~~---~~l~~n~~L~~~i~~~ 80 (418)
.|=||.+.|+ -|-.+.|||++|..|+.+.+..+.-.||.|+.+. .. ..+..|.++-+.++..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4677766654 4668889999999999998887777899999884 21 3456666776666665
No 292
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.46 E-value=8.3 Score=32.65 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=79.0
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
.++.|+++|+++. +..++.+++.+|+.|..=++...+.+. ...... -...+........ ...+..
T Consensus 11 LL~~L~~iLk~e~------s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l-~~~~~~-- 76 (160)
T PF11865_consen 11 LLDILLNILKTEQ------SQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISL-PMMGIS-- 76 (160)
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHH-hhccCC--
Confidence 4567788887774 689999999999988544422222221 111000 0111111111111 111110
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
...++.... .++..|+++|++.+ -..-...+..++.++..... .+...... ++|.+++.++..+....+...
T Consensus 77 ~~~ee~y~~-----vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 77 PSSEEYYPT-----VVINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred CchHHHHHH-----HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHH
Confidence 123333222 36788999999874 34444567778777774432 33333333 889999999876667777666
Q ss_pred HHHHHHh
Q 014817 305 ATVELLC 311 (418)
Q Consensus 305 ~~L~~L~ 311 (418)
.-|..|.
T Consensus 150 ~qL~~lv 156 (160)
T PF11865_consen 150 QQLADLV 156 (160)
T ss_pred HHHHHHH
Confidence 5555543
No 293
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.37 E-value=4.3 Score=43.21 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=97.3
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 194 ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 194 ~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
...+|.|++.....+...+..-..+|.+.. ...+ +..+. .....+|.|++-|.-. |..++-.++++|..+-.-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl--~~vP--~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVL--TNVP--KQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHH--hcCC--HHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHHh
Confidence 356888888887666677777777777774 2222 23332 2245778888888877 788888888888877544
Q ss_pred cccHHHHHHcCchHHHHHHhcCCC---cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFD---KCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA 348 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~---~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~ 348 (418)
...-..---.-.||.++.+=.+++ ..+++.|+..|..|.+ -|...-.-.. ..++..|.+.|.+....+++.|+.+
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHHHH
Confidence 332211111235666666655554 3567889999999997 4443333333 3677788888888888888888876
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.19 E-value=0.38 Score=50.19 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=34.9
Q ss_pred ccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRS 60 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~ 60 (418)
-.|..|.-.+.-|++- .|||.|-++|.+ .+...||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3799999999999998 899999999988 46788999964
No 295
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.08 E-value=2.1 Score=38.40 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhcccch---hhhhHhhchhhhHHHHHHHhhcCC-------------CChhhhHHHHHHHHHHccc
Q 014817 209 IEVRVNSAALIEIVLAGMRSQ---ELRAQISNLDEIFEGVIDILKNLS-------------SYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 209 ~~~~~~a~~~L~~L~~~s~~~---~~~~~i~~~~g~i~~Lv~lL~~~~-------------~~~~~~~~a~~aL~~L~~~ 272 (418)
...|++|..+|.|+ +..= ++-+.|.. -+++.|++..-... ..-.-+.-|+.+|..|+..
T Consensus 80 ~~lREnalV~laNi---sgqLdLs~~~e~I~~--PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~ 154 (257)
T PF12031_consen 80 EQLRENALVTLANI---SGQLDLSDYPESIAR--PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI 154 (257)
T ss_pred HHHhhcceEeeeee---eeeeecccCchHHHH--HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee
Confidence 46677777788887 4222 22233321 24445555442110 0235688999999999999
Q ss_pred cccHHHHHHcCc-------hHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHH-HHHhccCChHHHHHHHhc
Q 014817 273 KQTRYKAVAAGA-------AETLVDRLAD-FDKCDAERALATVELLCRIPAGCA-EFAEHALTVPLLVKTILK 336 (418)
Q Consensus 273 ~~n~~~i~~~G~-------v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~~l~~ 336 (418)
+.|...++..+- +..|+++|.. .+.-.+|-|+.+|.+|+..++... .+..+.++|..|+..+..
T Consensus 155 e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 155 ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence 999888776554 3445555543 466778999999999997665433 454456899999998855
No 296
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=11 Score=40.00 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=107.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH
Q 014817 201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV 280 (418)
Q Consensus 201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~ 280 (418)
+..+.++-..+|..+...|+.+ ....+.+..+.. .+++....++|++. ++-+--+|...+..||.- -
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l---~e~r~~~~~~~~-ekvl~i~ld~Lkde--dsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHL---IEKRKKATLIQG-EKVLAIALDTLKDE--DSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHH---HHhcchhhhhhH-HHHHHHHHHHhccc--CceeeHHHHHHHHHHHHh-------c
Confidence 3444455677888888899998 454454555544 68999999999988 777777777766666643 2
Q ss_pred HcCchHHHHH-HhcCCCc---ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 014817 281 AAGAAETLVD-RLADFDK---CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA 355 (418)
Q Consensus 281 ~~G~v~~Lv~-lL~~~~~---~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~ 355 (418)
....+|-|.+ +....+. ...-..-.++.+++. -.+-.....+ -.+...+..++.++...+..++.++.++|..
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 2345666666 4433211 112222234444331 1111111111 1233444444445666688888899998872
Q ss_pred CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 356 SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 356 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..-.... +-..++..++.+...+++.-.||+|.-+++.+-.
T Consensus 878 ~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 878 LAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2211111 2234666777777777789999999999988765
No 297
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=85.79 E-value=37 Score=33.17 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC-----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS-----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g 240 (418)
+.++...|+.+|.|+..+....|....+......+.+.+... ...+...-.+.|.-|. +...+.|..+....+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllt--ale~~~Rsql~~~l~ 187 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLT--ALETDHRSQLIAELL 187 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHH--HhhHHHHHHHHHHhc
Confidence 567889999999999998878888888776666666655321 2344455566677775 566677887766678
Q ss_pred hHHHHHHHhhcC
Q 014817 241 IFEGVIDILKNL 252 (418)
Q Consensus 241 ~i~~Lv~lL~~~ 252 (418)
+++.+.++|++.
T Consensus 188 Gl~~lt~~led~ 199 (532)
T KOG4464|consen 188 GLELLTNWLEDK 199 (532)
T ss_pred ccHHHHHHhhcc
Confidence 999999999853
No 298
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=85.59 E-value=45 Score=34.57 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhhhcChhhhhHHhh---cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 120 SRLSALRRLRGLARDSDKNRSLISS---HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 120 ~~~~Al~~L~~l~~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
.+.-|+..||.+.+....+-..+-. ...+..++..+.. .+.-+-.++++|.|+..+. .+++.+...
T Consensus 560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~--------~~an~ll~vR~L~N~f~~~-~g~~~~~s~-- 628 (745)
T KOG0301|consen 560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA--------DPANQLLVVRCLANLFSNP-AGRELFMSR-- 628 (745)
T ss_pred HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc--------chhHHHHHHHHHHHhccCH-HHHHHHHHH--
Confidence 3577899999888765544443321 2345555555542 3456778899999988775 677777643
Q ss_pred hHHHHHHh---cCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC---CChhhhHHHHHHHHHH
Q 014817 197 ITSLSSLL---FHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS---SYPRGLKVGIKALFAL 269 (418)
Q Consensus 197 i~~Lv~~L---~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~aL~~L 269 (418)
...+.... ++. +..++...+....|++- ....++-+ .|+.+.|...+.... .+-++.-.++.||.+|
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv-~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSV-LLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHH-HHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 22222222 223 35666655555555521 22222221 234444444443321 1345666788899999
Q ss_pred ccccccHHHHHHcCchHHHHHHhcC
Q 014817 270 CLVKQTRYKAVAAGAAETLVDRLAD 294 (418)
Q Consensus 270 ~~~~~n~~~i~~~G~v~~Lv~lL~~ 294 (418)
+..+.+..++...--|..++.-+++
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHH
Confidence 9999888888887778888887764
No 299
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.17 Score=45.94 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred cccCcCccccccCCeecCCCCcc-cHHHHHHHHHcCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTY-DRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
+.+|-||.+.-+|=|.++|||.. |-+| -..-..||+|++.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-----ccccccCchHHHH
Confidence 78999999999999999999965 4555 1113469999764
No 300
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.30 E-value=24 Score=37.64 Aligned_cols=211 Identities=16% Similarity=0.051 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH-H
Q 014817 170 AHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID-I 248 (418)
Q Consensus 170 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~-l 248 (418)
+-.++..|+.+.... .-...+...+++......|++.++-+--+|...+..|+ .. .. ..++|-|.+ .
T Consensus 744 k~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc---ev-------y~-e~il~dL~e~Y 811 (982)
T KOG4653|consen 744 KGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC---EV-------YP-EDILPDLSEEY 811 (982)
T ss_pred hHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH---Hh-------cc-hhhHHHHHHHH
Confidence 344444444443222 22233334566666677777776666666666666662 11 12 345666666 3
Q ss_pred hhcCCC-ChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCC
Q 014817 249 LKNLSS-YPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT 326 (418)
Q Consensus 249 L~~~~~-~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 326 (418)
...... .++.+-..-.++.++.... +-...-.+ -.+...+..+++++...+..+++.|.+|+.-...+-.=.-+ .+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HH
Confidence 332210 1244444557777776442 22222212 34555566666777778899999999999543322111222 34
Q ss_pred hHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhc---ChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 327 VPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSA---GVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 327 i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
+..++.+.+. ++..+++.|+..+..+=.+..+-...+..+ .....+..+...+.++..|-.|...+..
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5666666655 788899999999888776555444333332 2333344444444355555555444433
No 301
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.41 E-value=24 Score=36.75 Aligned_cols=152 Identities=14% Similarity=-0.003 Sum_probs=88.5
Q ss_pred hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc---cHHHHH---------HcCc----hHHHHHHhcCCCcccHHHH
Q 014817 240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ---TRYKAV---------AAGA----AETLVDRLADFDKCDAERA 303 (418)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~---n~~~i~---------~~G~----v~~Lv~lL~~~~~~~~~~a 303 (418)
|.+.-|+..+...-..+...+.-...|.+++.+.. ..+.+. ..|. ...++.+|.+.+--++-..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~ 319 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence 44445555555432134566667777777776532 111111 1122 4567778877654444444
Q ss_pred HHHHHHHhcCHhHHHHHHhc-----cCChHHHHHHHhcCChHHHHHHHHHHHHHhcC---CHHHHHHHHhcChHHHHHHH
Q 014817 304 LATVELLCRIPAGCAEFAEH-----ALTVPLLVKTILKISDRATEYAAGALAALCSA---SERCQRDAVSAGVLTQLLLL 375 (418)
Q Consensus 304 ~~~L~~L~~~~~~~~~i~~~-----~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~l 375 (418)
+.+..|+..+-....+++++ +..+..|++.+...++-++..|+..+..|+.. .+..|.+ ++....+-
T Consensus 320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~r~ 394 (1128)
T COG5098 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVGRR 394 (1128)
T ss_pred HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHHHH
Confidence 55555555322111122221 13456677777779999999999999999872 2223333 45555666
Q ss_pred HhhCCCHHHHHHHHHHHHHHHh
Q 014817 376 VQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 376 l~~~~~~~~~~~A~~~L~~l~~ 397 (418)
++.. +..+|++|.+++.-|--
T Consensus 395 lqDr-ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 395 LQDR-SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred hhhh-hHHHHHHHHHHHHHHHh
Confidence 6677 88899999998877654
No 302
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=46 Score=37.94 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=115.4
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC-CCChhHHHhhcccCCchHHHHHHhcCCCH---------HH----
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMF-PLTETECMEIASDADKITSLSSLLFHSSI---------EV---- 211 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~---------~~---- 211 (418)
.+....+++|.+. ++-+|+.|..-|+.. ..++.+.++.+ +..|+.-|..|.. ++
T Consensus 861 eI~~aF~~~Lsd~-------dEf~QDvAsrGlglVYelgd~~~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G 928 (1702)
T KOG0915|consen 861 EIQEAFSHLLSDN-------DEFSQDVASRGLGLVYELGDSSLKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEG 928 (1702)
T ss_pred HHHHHHHHHhccc-------HHHHHHHHhcCceEEEecCCchhHHHH-----HHHHHHHHhccccccceeccchhcccCC
Confidence 3457788888776 356677776644421 12222334433 4455555533211 11
Q ss_pred ---------HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817 212 ---------RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAA 282 (418)
Q Consensus 212 ---------~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~ 282 (418)
......=|.+|+ ..++. ...|..++++.++.. .-..+.-|+-=+..|+.....+.+=---
T Consensus 929 ~Lg~Tp~Gg~isTYKELc~LA---------Sdl~q-PdLVYKFM~LAnh~A-~wnSk~GaAfGf~~i~~~a~~kl~p~l~ 997 (1702)
T KOG0915|consen 929 TLGKTPDGGKISTYKELCNLA---------SDLGQ-PDLVYKFMQLANHNA-TWNSKKGAAFGFGAIAKQAGEKLEPYLK 997 (1702)
T ss_pred cCCCCCCCCcchHHHHHHHHH---------hhcCC-hHHHHHHHHHhhhhc-hhhcccchhhchHHHHHHHHHhhhhHHH
Confidence 223333455552 12333 567788888887653 3333333333333343322111111111
Q ss_pred CchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH--H
Q 014817 283 GAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASER--C 359 (418)
Q Consensus 283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~--~ 359 (418)
-.||.|.++=.+++..++.....+=..|..++ ........ ..+.-|+.-|.+..-++++.++.||..|-.+.+. .
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN--EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 25666666666777776555544444555542 33334333 2445566667777889999999999999985432 2
Q ss_pred HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+.+- ..-..+.+.++.= .+.+|++|-++.+-+++.
T Consensus 1076 ~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 22211 2222333333222 466777766666666553
No 303
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.65 E-value=0.34 Score=52.85 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=39.2
Q ss_pred CCCcccCcCcccccc-CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMC-DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
+-..+.|+||+++++ -=.+.-|||.||..|++-|+.. +..||.|+..
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhh
Confidence 344569999999999 5556689999999999999986 6789999743
No 304
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.60 E-value=59 Score=33.77 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=97.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc---hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN---LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
.++++...+.+.+--|..+|+.+ ..+...-..+.. ....+..++..+. . ++.-+--++++|.|+..+..++
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~---v~h~~~~s~~~~~~~~~~~~~~li~~~~-~--~~an~ll~vR~L~N~f~~~~g~ 622 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLA---VKHHSSNSLFCDREEGQNLVGTLIPILN-A--DPANQLLVVRCLANLFSNPAGR 622 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHH---HhccchhhhhhhhhhhhHHHHhhhcccc-c--chhHHHHHHHHHHHhccCHHHH
Confidence 44555566778888888888888 444433333322 1235555555555 3 5778888999999999997777
Q ss_pred HHHHHcCchHHHHHHhc---C-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-----CChHHHHHHHH
Q 014817 277 YKAVAAGAAETLVDRLA---D-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-----ISDRATEYAAG 347 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~---~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~~A~~ 347 (418)
..+... ...++..+. + .+..++........|++-. ..+-.++.|+.+.+...+.. .+-+..-..+.
T Consensus 623 ~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~ 697 (745)
T KOG0301|consen 623 ELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV 697 (745)
T ss_pred HHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 766543 333333332 2 2233333222222333310 00000002445555555544 22223445566
Q ss_pred HHHHHhcCCHHHHHHHHhcChHHHHHHHHhh-CCCHHHHHHHHHHHHH
Q 014817 348 ALAALCSASERCQRDAVSAGVLTQLLLLVQS-DCTDRAKRKAQLLLKL 394 (418)
Q Consensus 348 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~ 394 (418)
||.+|+..++..++.....++ ..+..-+.. ...+..+.-|..+++.
T Consensus 698 AlgtL~t~~~~~~~~A~~~~v-~sia~~~~~~~~~~~~k~~a~~il~~ 744 (745)
T KOG0301|consen 698 ALGTLMTVDASVIQLAKNRSV-DSIAKKLKEAVSNPSGKNIARDILSL 744 (745)
T ss_pred HHHhhccccHHHHHHHHhcCH-HHHHHHHHHhccCchhhHHHHHHHhc
Confidence 667777766666665555554 444555543 3356666666665553
No 305
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=32 Score=38.01 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=97.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHc
Q 014817 205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAA 282 (418)
Q Consensus 205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~ 282 (418)
++.+..+|..+-.+|..++ ..+......... .-+...|..-+++. ...++...+.+|..|-.... .-..++..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~---~~~s~~~~~~q~i~~I~n~L~ds~qs~--~~~~~~~rl~~L~~L~~~~~~e~~~~i~k 738 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELS---SSPSGEGLVEQRIDDIFNSLLDSFQSS--SSPAQASRLKCLKRLLKLLSAEHCDLIPK 738 (1176)
T ss_pred ccccHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3457899999999999994 333322222111 12444555555555 56677777777777764433 22222333
Q ss_pred CchHHHHHHhcCCCcccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHHHHhcC--ChHHHHHH--HHHHHHHhc
Q 014817 283 GAAETLVDRLADFDKCDAERALATVELLCR----IPAGCAEFAEHALTVPLLVKTILKI--SDRATEYA--AGALAALCS 354 (418)
Q Consensus 283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~--~~~~~~~A--~~~L~~l~~ 354 (418)
-+.+.++.+ ...+......+..+|..++. .+.+.+. . ...|..++..+..+ +......| +-++..+..
T Consensus 739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 233333333 66677777888888887773 1111111 0 01344455544442 22222222 333344443
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 355 ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 355 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..........-.+++..+...|.++ ++.+++.|...++.+.-.
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHc
Confidence 2222222222234555555566566 999999999999988754
No 306
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.98 E-value=15 Score=40.35 Aligned_cols=141 Identities=14% Similarity=0.049 Sum_probs=102.3
Q ss_pred chHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 196 KITSLSSLLFH----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 196 ~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
..|.+++..+. ++++++..|.-+|..|. .... .+.. .-+|.|+.++...+ ++.++.++..++..|+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM--~iSa----~fce--s~l~llftimeksp-~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLM--CISA----EFCE--SHLPLLFTIMEKSP-SPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHh--hhhH----HHHH--HHHHHHHHHHhcCC-Cceeeecchheccchhh
Confidence 45666666643 47999999999999994 2222 3433 35899999999654 89999999999999987
Q ss_pred ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
.-.|-..- --+.|...|.+.+..+++.|+-+|.+|...+- +.. .|-+.-+..+|-++++.++.-|-.-...
T Consensus 991 ~fpnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKV-KGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 991 RFPNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKV-KGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred hcccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHh-cccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 66553222 33456777778889999999999999886332 222 4888888888888888888777744444
Q ss_pred Hhc
Q 014817 352 LCS 354 (418)
Q Consensus 352 l~~ 354 (418)
|+.
T Consensus 1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred hhh
Confidence 444
No 307
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.85 E-value=35 Score=32.68 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=106.2
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC-ChhHHHhhcc-cCC-chHHHHHHhcCC----C---------HHH
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPL-TETECMEIAS-DAD-KITSLSSLLFHS----S---------IEV 211 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~-~~g-~i~~Lv~~L~~~----~---------~~~ 211 (418)
+..+-+.|++. ...+...++..|..+.. +.....+.+. .-+ -.+.+.+++... . +.+
T Consensus 58 ~k~lyr~L~~~-------~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 58 LKLLYRSLSSS-------KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHHHhCcC-------cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence 55666677665 35566778888887765 4423333333 322 234555555321 1 288
Q ss_pred HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHH-Hcccc----ccHHHHHHcCchH
Q 014817 212 RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFA-LCLVK----QTRYKAVAAGAAE 286 (418)
Q Consensus 212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~-L~~~~----~n~~~i~~~G~v~ 286 (418)
|......+..+.+ ..+...+..+-...+.+..+.+-|..+ ++++....+.+|.. +.... ..|..+.....+.
T Consensus 131 R~~fI~F~Lsfl~-~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 131 RTNFIRFWLSFLS-SGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred HHHHHHHHHHHHc-cCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 8888888888764 446666666655567888899888887 78999999999985 44333 2556666777899
Q ss_pred HHHHHhcCCCc----ccHHHHHHHHHHHhcCHh
Q 014817 287 TLVDRLADFDK----CDAERALATVELLCRIPA 315 (418)
Q Consensus 287 ~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~ 315 (418)
.|..+-...+. .+.+.+-..|..+|.++.
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 99997765555 778889999999996443
No 308
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.59 E-value=13 Score=39.80 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=95.6
Q ss_pred hhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817 231 LRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDKCDAERALATVE 308 (418)
Q Consensus 231 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~ 308 (418)
+|+.+.. .++|.|+....+. ....+..-+.+|.++-.+-.- ..+.. ...+|.|++.|.-+|..++-.++.++.
T Consensus 860 ykQRfF~--~ivP~l~~~~~t~--~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 860 YKQRFFC--DIVPILVSKFETA--PGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHHHHHH--hhHHHHHHHhccC--CccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 3455543 4789999988855 456777788888887664332 22222 457888889998888888888888887
Q ss_pred HHhcCHh-HHHHHHhccCChHHHHHHHhcCC---hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817 309 LLCRIPA-GCAEFAEHALTVPLLVKTILKIS---DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 309 ~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~---~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 384 (418)
.+....+ -...-+. -.+|.++.+=++.+ ..+++-|+.+|..|...-|...-.-..-.++..|...|.+. -..+
T Consensus 935 ~~l~~~~tL~t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlV 1011 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLS--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLV 1011 (1030)
T ss_pred HHHHhccccchHHHh--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHH
Confidence 6663222 2222221 24455554333322 56899999999999985554433333445677777777444 4445
Q ss_pred HHHHHHH
Q 014817 385 KRKAQLL 391 (418)
Q Consensus 385 ~~~A~~~ 391 (418)
|+.|..+
T Consensus 1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred HHHHHHH
Confidence 6666543
No 309
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.49 E-value=19 Score=38.80 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=110.9
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--cC
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS--DA 194 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~ 194 (418)
+.+.+.+|+..+...+++.. ........|.+-.++.....+. |..+.-.|+..|..++..- |.... ..
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDa------N~~v~~~aa~~l~~ia~~l---r~~~~~~~~ 335 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDA------NINVVMLAAQILELIAKKL---RPLFRKYAK 335 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCc------chhHHHHHHHHHHHHHHhc---chhhHHHHH
Confidence 56678899999998886543 1122222455555666655553 5667777777777776533 22221 24
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-c
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-K 273 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~ 273 (418)
+..+.+..-+..-...++..+..++... .. .......++.....+.++ ++..+......+...... +
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~---~n-------s~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAI---LN-------STPLSKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHH---Hh-------cccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcC
Confidence 6678888888777888888877777777 22 111134677888889988 888888766666555433 2
Q ss_pred -ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 274 -QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 274 -~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
.+...-.-.+.+|.++....+.+..++..+..++..+.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22222233457777788877778888888777776554
No 310
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.39 E-value=15 Score=28.26 Aligned_cols=72 Identities=7% Similarity=-0.046 Sum_probs=54.3
Q ss_pred hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817 235 ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE 308 (418)
Q Consensus 235 i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~ 308 (418)
+....+.+..|++..+.. .......++..|..|..++.....+.+-|++..|-++=..-++..+...-.++.
T Consensus 25 l~~~~~Ll~~LleWFnf~--~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 25 LVKERLLLKQLLEWFNFP--PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HccHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334456888899998888 667888999999999999999999999999999666655444555554444443
No 311
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=82.27 E-value=21 Score=37.92 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=106.5
Q ss_pred HHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchH--HHHHHh
Q 014817 127 RLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKIT--SLSSLL 204 (418)
Q Consensus 127 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~--~Lv~~L 204 (418)
.|.....+++.+.+.+.+.|++..+...+..-+ +.+++..++..|.+++... +.+........+. .+-.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~------~~~~~~~il~~l~n~~~~~-~~~~~~~~~~~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD------NEELHRKILGLLGNLAEVL-ELRELLMIFEFIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc------chhHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHH
Confidence 666888889999999999999999999998664 5789999999999988655 3444333222222 233344
Q ss_pred cCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817 205 FHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG 283 (418)
Q Consensus 205 ~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G 283 (418)
...+. +.-..++.+|..+. +..++ ....+...-+-..+++..... ......+.-..
T Consensus 567 ~~w~~~ersY~~~siLa~ll--~~~~~-~~~~~~r~~~~~~l~e~i~~~--------------------~~~~~~~~~~~ 623 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLL--SDSEK-TTECVFRNSVNELLVEAISRW--------------------LTSEIRVINDR 623 (699)
T ss_pred hhcchhhHHHHHHHHHHHHH--hCCCc-CccccchHHHHHHHHHHhhcc--------------------Cccceeehhhh
Confidence 44444 66677888888885 32222 111111111222233332222 11122222222
Q ss_pred chHH-HHHHhc-CCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHH
Q 014817 284 AAET-LVDRLA-DFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTI 334 (418)
Q Consensus 284 ~v~~-Lv~lL~-~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l 334 (418)
-+.+ +..++. +..+..+-.|++++.++.. ++++.+.+.+. |+++.+.+.-
T Consensus 624 ~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 676 (699)
T KOG3665|consen 624 SFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRES-NGFELIENIR 676 (699)
T ss_pred hcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhc-cchhhhhhcc
Confidence 3333 455554 3356778899999999985 45666666664 8777777654
No 312
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.22 E-value=12 Score=34.93 Aligned_cols=139 Identities=15% Similarity=0.082 Sum_probs=90.2
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
++...+..|.+.+.+.+..+...|+-|+ ..+.+.....- ..+|-.+++-+++. ...+.+.|+.++..+.+.-.+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs--~fh~e~l~~~L--~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLS--EFHPESLNPML--HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHH--hhhHHHHHHHH--HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777888888888888884 34443333332 34777788888887 678999999999999877554
Q ss_pred HHHHHHcCchHHHHHHhc----CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 276 RYKAVAAGAAETLVDRLA----DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
...- .+..++..|. ..+.-+.+.|..+|..+..+-. .+ -+++.|...+.+.++.++..++....+
T Consensus 163 ~i~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 163 SIDQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-PQ------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-hH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 4332 3444444442 2234578888888887774321 11 234456666777888888777765544
No 313
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.20 E-value=20 Score=37.31 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=89.4
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGC 317 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~ 317 (418)
..++|.|..-+++. +..+++.++..+-..+..-+ ...++.-++|.|-.+-. +.+..++.+++.++..+. ..-.+
T Consensus 388 ~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDS--DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDK 462 (700)
T ss_pred HHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHH
Confidence 34778888888877 78999999999998886655 55566667888777643 445677888888888888 23334
Q ss_pred HHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 318 AEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
..+++. +.++.+.+...++.+.-..+.+..++...... .+++.-+.+++.++-+.-.+
T Consensus 463 ~~v~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 463 AAVLDE---LLPILKCIKTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHhHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhhhcc
Confidence 444443 56666667677888877777776666652111 14455566777776665433
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.03 E-value=5.6 Score=31.93 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=53.5
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhc-ChHHHHHHHHhh----C---CCHHHHHHHHHHHHHHHh
Q 014817 327 VPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSA-GVLTQLLLLVQS----D---CTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 327 i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~-g~i~~L~~ll~~----~---~~~~~~~~A~~~L~~l~~ 397 (418)
+..|.+.|.+.++.++..|+.+|..+|. |++.++..+.+. .+|..+..+-.. . .+..+|..|..++..+-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 4468888888899999999999999998 888888877763 455555444321 1 136789999999988765
Q ss_pred h
Q 014817 398 S 398 (418)
Q Consensus 398 ~ 398 (418)
.
T Consensus 120 ~ 120 (122)
T cd03572 120 Y 120 (122)
T ss_pred c
Confidence 4
No 315
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.33 E-value=16 Score=39.37 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=78.8
Q ss_pred hhhHHHHHHHhh------cCCCChhhhHHHHHHHHHHccc---cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHH
Q 014817 239 DEIFEGVIDILK------NLSSYPRGLKVGIKALFALCLV---KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVEL 309 (418)
Q Consensus 239 ~g~i~~Lv~lL~------~~~~~~~~~~~a~~aL~~L~~~---~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~ 309 (418)
.|.++.++.++. ....++....-|++++.+|+.. ++--+...+.=.++.+...++++..-++..|++++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 678899999987 2222566777899999999843 1222344566677777888888888899999999999
Q ss_pred Hhc----CHhHHHHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC
Q 014817 310 LCR----IPAGCAEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 310 L~~----~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~ 356 (418)
.+. ++.+-..+ +....+.|. +.+..++-.|+-||..+-...
T Consensus 489 ~~~~df~d~~~l~~a------le~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSEA------LELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHhccCCChHHHHHH------HHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 993 33333333 445666666 466678888888888877633
No 316
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=1.9 Score=41.46 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=32.4
Q ss_pred cccCcCccccccC---CeecCCCCcccHHHHHHHHHc----C---CCCCCCCCC
Q 014817 17 HFRCPISLELMCD---PVTVCTGQTYDRPSIESWVAT----G---NTTCPVTRS 60 (418)
Q Consensus 17 ~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~----~---~~~cp~~~~ 60 (418)
-|.|-||.+..-- =+.+||+|.||+.|...++.- | .-.||.++-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3789999887654 346799999999999999752 2 224776553
No 317
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.71 E-value=13 Score=36.99 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=78.6
Q ss_pred ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHH
Q 014817 255 YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKT 333 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~ 333 (418)
+...+..|++.|.|.+..-..+.+--..-.+..++.-|.++ +.+++-.++.+|..+...-.++.-.----.+...+..+
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l 350 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTL 350 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHH
Confidence 55778899999999998733222222233556666666544 46777777777776664333332211000122344444
Q ss_pred HhcCChHHHHHHHHHHHHHhc---CCH--HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 334 ILKISDRATEYAAGALAALCS---ASE--RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 334 l~~~~~~~~~~A~~~L~~l~~---~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..+.++.++-.|......|+. +.- .....+ .. ...+|+..|+.. ++.+-+++...++.+..
T Consensus 351 ~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~k-~~~~lllhl~d~-~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 351 FDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-KK-RLAPLLLHLQDP-NPYVARACRSELRTCYP 416 (533)
T ss_pred HHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-Hh-ccccceeeeCCC-ChHHHHHHHHHHHhcCc
Confidence 555788888888877777665 221 122222 22 223444556555 77666676666665544
No 318
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=80.70 E-value=1.7 Score=40.73 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=45.5
Q ss_pred CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 80 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~ 80 (418)
..+-+-||+|.+.|.-|+.= ..||.-|-.|=.+ -...||.|+.++.+ +.+.++...++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 44557999999999999976 5799999888432 35679999988762 2566777776664
No 319
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.66 E-value=58 Score=31.64 Aligned_cols=234 Identities=18% Similarity=0.038 Sum_probs=122.0
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s 226 (418)
+.-+++=|.+.. ...++..++--|..-+.+. +.+..+..+|.+..+++.+.. ++......++.++..+. +
T Consensus 23 v~ylld~l~~~~------~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l--~ 93 (361)
T PF07814_consen 23 VEYLLDGLESSS------SSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVL--S 93 (361)
T ss_pred HHHHHhhcccCC------CccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHH--c
Confidence 445555555222 4567888777777666666 789999999999999999944 34435555555555553 4
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc---------CCCc
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA---------DFDK 297 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~---------~~~~ 297 (418)
.+..+-..+ ...+.+..++.++.-.. ......... .....+..++. .+.+..+...+. ....
T Consensus 94 ~d~~~~~l~-~~~~~~~ll~~Ll~~~~-~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~l 164 (361)
T PF07814_consen 94 RDGLNMHLL-LDRDSLRLLLKLLKVDK-SLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPEL 164 (361)
T ss_pred cCCcchhhh-hchhHHHHHHHHhcccc-ccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCccc
Confidence 444433333 33456677788877110 000000000 00111111111 112222222221 1112
Q ss_pred ccHHHHHHHHHHHh---------------cCHhHHHHHHhccCChHHHHHHHhc----C------------ChHHHHHHH
Q 014817 298 CDAERALATVELLC---------------RIPAGCAEFAEHALTVPLLVKTILK----I------------SDRATEYAA 346 (418)
Q Consensus 298 ~~~~~a~~~L~~L~---------------~~~~~~~~i~~~~g~i~~Lv~~l~~----~------------~~~~~~~A~ 346 (418)
.-+..++.+|..++ ..+.-++++... |++..++..+.. . +...-+.+.
T Consensus 165 sp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~l-g~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl 243 (361)
T PF07814_consen 165 SPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELREL-GGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCL 243 (361)
T ss_pred ccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhH-HHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHH
Confidence 23345666666663 112346677775 889999999862 1 112236788
Q ss_pred HHHHHHhcCCHHHHHHHHh--cChHHHHHHHHhhCCCHHH---HHHHHHHHHHHHhhCC
Q 014817 347 GALAALCSASERCQRDAVS--AGVLTQLLLLVQSDCTDRA---KRKAQLLLKLLRDSWP 400 (418)
Q Consensus 347 ~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~---~~~A~~~L~~l~~~~~ 400 (418)
++|-+.+..+++++..... .+.+..+...+-..+.+.. ...+.+++-|++.+..
T Consensus 244 ~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 244 SILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 8888877755555444443 2344444444333323333 3456666667776653
No 320
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=80.41 E-value=0.62 Score=36.40 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=27.6
Q ss_pred CCCCCcccCcCccccccCCeec--CCCCcccHHHHH
Q 014817 12 VQIPYHFRCPISLELMCDPVTV--CTGQTYDRPSIE 45 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~--~~g~~~~r~~i~ 45 (418)
..+.++-.|++|++.+.+++.. ||||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3556677899999999988744 999999888864
No 321
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.78 E-value=38 Score=35.45 Aligned_cols=94 Identities=13% Similarity=-0.018 Sum_probs=54.9
Q ss_pred CCchHHHHHHhc----CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC-CCChhhhHHHHHHHHH
Q 014817 194 ADKITSLSSLLF----HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL-SSYPRGLKVGIKALFA 268 (418)
Q Consensus 194 ~g~i~~Lv~~L~----~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~~a~~aL~~ 268 (418)
...++.|...|. .++.+.+..++.+|+|+ . ....++.|...+... ..+..++..|++||..
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~---g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL---G-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRR 550 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc---C-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHH
Confidence 445666666665 45667788888888888 2 133677777777655 2256788888888888
Q ss_pred HccccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHH
Q 014817 269 LCLVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVE 308 (418)
Q Consensus 269 L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~ 308 (418)
++.....+ +.+.|+.++.+. +.+++..|..+|.
T Consensus 551 ~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 551 LAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp GGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 85443322 234567776543 3455544544443
No 322
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.31 E-value=1.7 Score=45.17 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=32.8
Q ss_pred CCCCCcccCcCccccccCCe----ecC---CCCcccHHHHHHHHHc
Q 014817 12 VQIPYHFRCPISLELMCDPV----TVC---TGQTYDRPSIESWVAT 50 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv----~~~---~g~~~~r~~i~~~~~~ 50 (418)
...++.-+|++|..-+.+|+ +.+ |+|.||..||..|.++
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 45566789999999999977 334 8999999999999864
No 323
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=78.74 E-value=99 Score=33.20 Aligned_cols=211 Identities=11% Similarity=0.010 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
.++|+.+....+..+-...+...........++.++.+-......++....+.+..+ +.... ...+ . ...-+.+
T Consensus 450 ~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l---a~q~~-~~~~-~-~~~~~l~ 523 (759)
T KOG0211|consen 450 DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL---ALQLG-VEFF-D-EKLAELL 523 (759)
T ss_pred hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH---HHhhh-hHHh-h-HHHHHHH
Confidence 467777766544433222212233344555677777776666677788888888877 33322 2222 2 1122333
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHH---HHHHHHHHhcCHhHHHHHHh
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAER---ALATVELLCRIPAGCAEFAE 322 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~---a~~~L~~L~~~~~~~~~i~~ 322 (418)
...+.+. ..+++++|+..+..++..-. ... ...-.++.++....+++-..+.. ++..|..+.+.+-..+
T Consensus 524 ~~~l~d~--v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~---- 595 (759)
T KOG0211|consen 524 RTWLPDH--VYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCE---- 595 (759)
T ss_pred Hhhhhhh--HHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHH----
Confidence 3334444 45788888888888875433 111 11224555555554432233333 3334444334333222
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 323 HALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..+|.+..+.....+.++-++++.|..+-. -....+. + .+.+++.-|..+.+...|-.|..++..+..
T Consensus 596 --~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~----~-~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 596 --DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD----E-EVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred --HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH----H-HHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 456777777777889999999999988776 2222222 2 334444444444365566555554444433
No 324
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.52 E-value=8.4 Score=29.25 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=54.3
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASER 358 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~ 358 (418)
+...+..|.++...++..++..|+.|..... .......+.+..+...|.++++-+--+|+..|..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4456777788888999999999999996655 22222235666777777778999999999999999984443
No 325
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.16 E-value=77 Score=31.60 Aligned_cols=187 Identities=14% Similarity=0.036 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
..|..++..+.+. +...++..|+..|..+.-+ +...+++.. .-++..+++.|++.. +....+.|+.+|..+
T Consensus 286 ~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~------~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 286 ALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSE------DEIIKKLALRVLREM 357 (516)
T ss_pred HHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccch------hhHHHHHHHHHHHHH
Confidence 4566677777655 3444567899988876544 444444333 235677888887743 467889999999988
Q ss_pred CCChhHHHhhccc--CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 181 PLTETECMEIASD--ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 181 ~~~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
..+. ...+.+ .-+|..+++.-.....++...|.....-++ +.+.... .|..+..++.+. +...
T Consensus 358 l~~Q---~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~l--as~~P~~--------~I~~i~~~Ilt~--D~~~ 422 (516)
T KOG2956|consen 358 LTNQ---PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTL--ASHLPLQ--------CIVNISPLILTA--DEPR 422 (516)
T ss_pred HHhc---hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH--HhhCchh--------HHHHHhhHHhcC--cchH
Confidence 7654 222222 234555555555566666655555433332 3333321 223333444444 4555
Q ss_pred hHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 259 LKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
...++..+-.|+..-.. --.-+=....|.+++.-.+.+..+++.++..|-.+.
T Consensus 423 ~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 423 AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 55555556666543221 111122457777777777766677777777776554
No 326
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=78.13 E-value=2.3 Score=30.66 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=22.1
Q ss_pred cCcCcccccc-----CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELMC-----DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.||++-.- +|.+. .|+.-.||.|.+-=.++++..||.|+.++.
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 5999987543 34444 588888999999888888999999987653
No 327
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.06 E-value=15 Score=30.49 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=58.7
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.++..|.+-|+++++.++..|..+|-.++. --.......++. .+++..|+.++.... ++.++..++..+.+-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vk-NCG~~fh~evas-~~fl~~l~~l~~~~~-~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVK-NCGTHFHDEVAS-REFMDELKDLIKTTK-NEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-HCCHHHHHHHhh-HHHHHHHHHHHcccC-CHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999942 112455566654 689999999998643 78999999999988764
No 328
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.99 E-value=1.2 Score=42.12 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=40.0
Q ss_pred ccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 18 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
+.|.|+++.|-| |++.|.||+|-..+|+.|-....-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 578899998876 889999999999999999765447799998877644
No 329
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=77.59 E-value=1.7 Score=40.04 Aligned_cols=42 Identities=29% Similarity=0.582 Sum_probs=34.2
Q ss_pred ccCcCccccc----cCCeecCCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817 18 FRCPISLELM----CDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60 (418)
Q Consensus 18 ~~Cpi~~~~~----~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~ 60 (418)
+-||||.+.+ .+|..++|||+--..|.++....+ .+||.|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4599998875 456688999998888888887766 99999965
No 330
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.42 E-value=55 Score=35.36 Aligned_cols=182 Identities=8% Similarity=0.066 Sum_probs=103.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817 203 LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAA 282 (418)
Q Consensus 203 ~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~ 282 (418)
-+.+.+..-|..|+.-+.... .+.. ....-...|.+-.+++....+. +..+...|+..|-.|+.....-..=...
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l---~e~~-~~~~~~~~~ll~~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAIL---EEAK-KEIVKGYTGLLGILLKIRLKDA-NINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hhhccchHHHHHHHHHHHHHH---hccc-cccccCcchHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 334556666777777666663 2222 1222122455666666655543 7888888999999888654433333446
Q ss_pred CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHH
Q 014817 283 GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE-RCQR 361 (418)
Q Consensus 283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~-~~~~ 361 (418)
++.+.+++.+......+++.++.++...+.... . .-..+.+...+++.++..+......+.......+ ....
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l-~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTP------L-SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------H-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 788999999988777888888777766554110 0 1234455666777788777776655555443111 1111
Q ss_pred HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 362 DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 362 ~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
.---.+.++.++... .+++..+|.+|..++.-+-+
T Consensus 409 ~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHH
Confidence 111123445554444 23366777776665544443
No 331
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.17 E-value=3.5 Score=34.37 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=33.3
Q ss_pred cccCcCccccccCCeecCCCC-----cccHHHHHHHHHc-CCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQ-----TYDRPSIESWVAT-GNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~~-~~~~cp~~~~~l~ 63 (418)
+..|=||.+--. +...||.. ..-++|+++|... +...|+.|+.++.
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 446999988753 45567643 2258999999974 4677999998764
No 332
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.89 E-value=36 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=48.9
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSLSSLLFH---SSIEVRVNSAALIEIVL 223 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~~L~~---~~~~~~~~a~~~L~~L~ 223 (418)
+..|-+-|..+ ++.++..|+.+|-.+..+.. .....+.+..++..|++++.. .+.+++..+...|....
T Consensus 39 ~raL~krl~~~-------n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 39 ARAIRKKIKYG-------NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 44444555544 56777778877776655442 356677777888889999975 47899999999999883
No 333
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=75.86 E-value=89 Score=31.16 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=89.9
Q ss_pred chHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH-HHHHHcccc
Q 014817 196 KITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK-ALFALCLVK 273 (418)
Q Consensus 196 ~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~-aL~~L~~~~ 273 (418)
.+..++++|.. .+...+..|.++|..++ .+...+ ..-...-+|..+++.-.+. +..+...|.. ++.-+++..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml---~~Q~~~-l~DstE~ai~K~Leaa~ds--~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREML---TNQPAR-LFDSTEIAICKVLEAAKDS--QDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHH---HhchHh-hhchHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHhhC
Confidence 36778888977 67888899999999993 333322 2212233666666666666 5555555544 455566665
Q ss_pred ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC--HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 274 QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI--PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 274 ~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
..+.. ..+..++...|......++..+..|... .+.--.++. ...|.+++.-.+.+..+++.|+-+|-.
T Consensus 404 P~~~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 404 PLQCI-------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred chhHH-------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 53322 2333444444545445555566666632 233333443 678999999888899999999999888
Q ss_pred Hhc
Q 014817 352 LCS 354 (418)
Q Consensus 352 l~~ 354 (418)
+..
T Consensus 475 mv~ 477 (516)
T KOG2956|consen 475 MVN 477 (516)
T ss_pred HHH
Confidence 776
No 334
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.26 E-value=2.6 Score=28.32 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=23.7
Q ss_pred ccCcCccccc--cCCeec--CCCCcccHHHHH
Q 014817 18 FRCPISLELM--CDPVTV--CTGQTYDRPSIE 45 (418)
Q Consensus 18 ~~Cpi~~~~~--~dPv~~--~~g~~~~r~~i~ 45 (418)
-.|++|++.| .|.+++ .||-.|=|.|-+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4699999999 788888 499999999943
No 335
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.15 E-value=19 Score=28.40 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=54.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHh-----hCCCHHHHHHHHHHHHHHH
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQ-----SDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~~A~~~L~~l~ 396 (418)
++..|.+.|.+.++.++-.|+.+|-.+.. +++....++.....+..++.+.. ...+..+|+++..+++..+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45567777888899999999999999998 77788888888877777765411 1226789999998887653
No 336
>PLN02195 cellulose synthase A
Probab=75.06 E-value=2.7 Score=45.30 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=36.6
Q ss_pred cCcCccc-----cccCCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLE-----LMCDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~-----~~~dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.||++ .+-+|-+- .||.-.||.|.+-=-++|+..||+|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4999998 44566655 699999999996556788999999998886
No 337
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=2.2 Score=41.69 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=24.7
Q ss_pred cccCcCccccccCC-e---ecCCCCcccHHHHHHHHH
Q 014817 17 HFRCPISLELMCDP-V---TVCTGQTYDRPSIESWVA 49 (418)
Q Consensus 17 ~~~Cpi~~~~~~dP-v---~~~~g~~~~r~~i~~~~~ 49 (418)
...|.||..-..++ - +..|||.||..|..++++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46899999333333 2 456999999999999986
No 338
>PF14353 CpXC: CpXC protein
Probab=74.47 E-value=2 Score=34.90 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=32.8
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~ 63 (418)
+.+||-|+..+.-.+-..-.-.-.....++-++.. ..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 35799999999988855443356666666666432 456999998754
No 339
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.33 E-value=53 Score=27.85 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=72.7
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-CChHHHHHHHhc-CChHHHHHHHHHHHHHhc---CCHH
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-LTVPLLVKTILK-ISDRATEYAAGALAALCS---ASER 358 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~---~~~~ 358 (418)
.+..+..+|.+.+..-+-.++.++..++... +.+.+.++. --+..+++++.. +...+.+.|+.+|..|.. +-++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4555777888777666666777777666432 134443431 256677777766 566778899999988876 5566
Q ss_pred HHHHHHhc---ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 359 CQRDAVSA---GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 359 ~~~~~~~~---g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
...++... ++++.++.+++. ......+..+|..+-.++.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCC
Confidence 55555443 345555555532 5667788888888888765
No 340
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.18 E-value=1 Score=40.16 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=27.8
Q ss_pred cCCe-ecCCCCcccHHHHHHHHHcCCC-CCCCCCCCCCCCCCccc
Q 014817 28 CDPV-TVCTGQTYDRPSIESWVATGNT-TCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 28 ~dPv-~~~~g~~~~r~~i~~~~~~~~~-~cp~~~~~l~~~~l~~n 70 (418)
.||. ++.|+|+||-.|... .++ .||.|++++....+..|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~----~~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKA----SSPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhccc----CCccccccccceeeeeecccc
Confidence 5565 558999999988433 233 89999998765555444
No 341
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.96 E-value=1e+02 Score=32.62 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=35.1
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 326 TVPLLVKTILK-ISDRATEYAAGALAALCSASE--RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 326 ~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
.++..|.+|.. -|+.++--|+.+|.--|.+.. ++.. ++++| -++...-+|+.|.-.+.++--
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~------lLepl----~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN------LLEPL----TSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH------HHhhh----hcChHHHHHHHHHHHHHHHHH
Confidence 45667776654 677777777777766666332 2111 23333 234356666666666655544
No 342
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=73.95 E-value=59 Score=28.21 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAE 319 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 319 (418)
.++.++++.-+. +..++..|+..|.-+.... -|... .+|.|+-+..++++.+...|...+..|....++--.
T Consensus 9 yl~~Il~~~~~~--~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSS--DDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 566677777777 7889999999887765433 34443 688999999999999999999999998854332221
Q ss_pred HHhccCChHHHHHHHhc--CChHH-----HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC-------CHHHH
Q 014817 320 FAEHALTVPLLVKTILK--ISDRA-----TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC-------TDRAK 385 (418)
Q Consensus 320 i~~~~g~i~~Lv~~l~~--~~~~~-----~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~ 385 (418)
-.-. .|+..-...-.. ++... ...-..-|+.+..++...|.. .+..|+..+.... ...-.
T Consensus 82 ~~~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHH
Confidence 1111 124433333332 22221 566677778888866666766 5677777775442 34455
Q ss_pred HHHHHHHHHHHhh
Q 014817 386 RKAQLLLKLLRDS 398 (418)
Q Consensus 386 ~~A~~~L~~l~~~ 398 (418)
.....+..||+..
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 6677777777664
No 343
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.90 E-value=38 Score=37.48 Aligned_cols=141 Identities=15% Similarity=0.035 Sum_probs=100.2
Q ss_pred hHHHHHHHhhcCC--CChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhc-CHh
Q 014817 241 IFEGVIDILKNLS--SYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCR-IPA 315 (418)
Q Consensus 241 ~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~-~~~ 315 (418)
+.|.++...++.. .+|+.+.+|.-||..+..-+ +.+.. .+|.|+..|. ++++.++.+++-+|.-|+- .+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 5666777775431 26889999999999885432 33322 6788999997 7788888899888887773 222
Q ss_pred HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 316 GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 316 ~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
-.+ -.-+.|...+...+..+++.|+.+|.+|--. ..+.=-|.+..+...|..+ +++++..|.....-|
T Consensus 995 lie------~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~-~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 LIE------PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDP-NAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccc------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCC-cHHHHHHHHHHHHHh
Confidence 222 2234677777789999999999999998762 2222368888888888666 999999999666666
Q ss_pred Hhh
Q 014817 396 RDS 398 (418)
Q Consensus 396 ~~~ 398 (418)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 553
No 344
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=73.89 E-value=1.6 Score=40.54 Aligned_cols=26 Identities=12% Similarity=0.427 Sum_probs=19.3
Q ss_pred cccCcCcccccc--CC-eecCCCCcccHH
Q 014817 17 HFRCPISLELMC--DP-VTVCTGQTYDRP 42 (418)
Q Consensus 17 ~~~Cpi~~~~~~--dP-v~~~~g~~~~r~ 42 (418)
.|.||+|+..|. +. ..-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999996 33 333578999874
No 345
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=73.43 E-value=0.19 Score=35.62 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=22.4
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+..||.|...| ....|+.+|..|-.++... ..||-|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~~--a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKKE--AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEEE--EE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECccccccceec--ccCCCcccHHH
Confidence 45799998864 3344788888886654333 67999998864
No 346
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.16 E-value=25 Score=28.69 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=57.0
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.++..|-+-|+++++.++..|+.+|-.++. --.+.....++. .+++..|+.++......+.++..++..+.+-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vk-Ncg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVK-NCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999952 113455666654 679999999998874233488888888887764
No 347
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.01 E-value=1.4e+02 Score=32.00 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=131.6
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
..-|..+|.+.. +...++.--.++..++.+. + -....+.+|+-..+.+.+++...--.|... +.
T Consensus 37 ~~dL~~lLdSnk------d~~KleAmKRIia~iA~G~-d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrY---AE 100 (968)
T KOG1060|consen 37 HDDLKQLLDSNK------DSLKLEAMKRIIALIAKGK-D------VSLLFPAVVKNVASKNIEVKKLVYVYLLRY---AE 100 (968)
T ss_pred hHHHHHHHhccc------cHHHHHHHHHHHHHHhcCC-c------HHHHHHHHHHHhhccCHHHHHHHHHHHHHH---hh
Confidence 345778887764 3444454445677777766 3 234578899999999999998776666666 33
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
.+.+-..+ -|..+=+-|.++ ++.++..|+++|..+ |..++.-=++-++-+...+..+.++..|+-++
T Consensus 101 eqpdLALL-----SIntfQk~L~Dp--N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AI 167 (968)
T KOG1060|consen 101 EQPDLALL-----SINTFQKALKDP--NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI 167 (968)
T ss_pred cCCCceee-----eHHHHHhhhcCC--cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 33322222 256677778888 899999999999877 44443222233333444566677888888888
Q ss_pred HHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHH
Q 014817 308 ELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKR 386 (418)
Q Consensus 308 ~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 386 (418)
-.|-. .++.+.++.+ .+=.+|...++.+--.|+.+.-.+|. +....+ ++-..+|.++|-.- ++=.|
T Consensus 168 pKLYsLd~e~k~qL~e------~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dv-deWgQ- 234 (968)
T KOG1060|consen 168 PKLYSLDPEQKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDV-DEWGQ- 234 (968)
T ss_pred HHHhcCChhhHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccch-hhhhH-
Confidence 77764 4555555544 34445566889999999999888886 223322 44567777777332 22233
Q ss_pred HHHHHHHHHHhhCCC
Q 014817 387 KAQLLLKLLRDSWPQ 401 (418)
Q Consensus 387 ~A~~~L~~l~~~~~~ 401 (418)
.-++.+|.++.++
T Consensus 235 --vvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 235 --VVLINMLTRYARH 247 (968)
T ss_pred --HHHHHHHHHHHHh
Confidence 2355555555443
No 348
>PLN02189 cellulose synthase
Probab=72.97 E-value=2.6 Score=45.79 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=36.0
Q ss_pred cCcCcccccc-----CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELMC-----DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|+||++-.. +|-+- .||.-.||.|.|-=.++|+..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 8999998643 45544 599999999996656778999999997764
No 349
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=72.82 E-value=1.3 Score=36.81 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.1
Q ss_pred CcccCcCccccccCCeecCCC
Q 014817 16 YHFRCPISLELMCDPVTVCTG 36 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g 36 (418)
++.+||||++.-.+.|++-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999999664
No 350
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.67 E-value=21 Score=29.49 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=53.8
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHHHHHhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhc
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCR--IPAGCAEFAEHALTVPLLVKTILK------ISDRATEYAAGALAALCS 354 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~~l~~------~~~~~~~~A~~~L~~l~~ 354 (418)
++..|..-|.++++.++-.|+.+|..+.. .......+... +++.-|++++.. .+..+++..+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56667788888888888999999998884 35566677764 888889998853 467888888888876554
No 351
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.37 E-value=31 Score=28.64 Aligned_cols=75 Identities=8% Similarity=0.121 Sum_probs=59.5
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
.++..|.+-|.++++.++..|+.+|-.++. --.......|+. .+++..|+.++.... ++.++..++..|...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vk-NCG~~fh~evas-k~Fl~eL~kl~~~~~-~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAE-NCGKRFHQEVAS-RDFTQELKKLINDRV-HPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHhh-HHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999952 123345556654 679999999999853 889999999999888643
No 352
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.27 E-value=75 Score=28.68 Aligned_cols=139 Identities=18% Similarity=0.027 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 320 (418)
++.|+.-+.... ++..+...+.+|..++.++ .+... ++..|..+...++.....-++..+..+-..+...-
T Consensus 2 l~~L~~~l~~~~-~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKIS-DPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCC-ChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 344444344443 8899999999999999888 55444 34445555555544443455555555553222111
Q ss_pred HhccCChHHHHHH--Hh-----cC---ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH-hhCCCHHHHHHHH
Q 014817 321 AEHALTVPLLVKT--IL-----KI---SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV-QSDCTDRAKRKAQ 389 (418)
Q Consensus 321 ~~~~g~i~~Lv~~--l~-----~~---~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~~A~ 389 (418)
+.+..++.. ++ .+ .....-.....+..+|...|+.-. ..+..+..+| +.+ ++..+..+.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alal 143 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALAL 143 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHH
Confidence 122222222 11 11 112222224467778886666333 3677777788 455 888999999
Q ss_pred HHHHHHHhh
Q 014817 390 LLLKLLRDS 398 (418)
Q Consensus 390 ~~L~~l~~~ 398 (418)
..|+.|++.
T Consensus 144 e~l~~Lc~~ 152 (234)
T PF12530_consen 144 EALAPLCEA 152 (234)
T ss_pred HHHHHHHHH
Confidence 999988853
No 353
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.26 E-value=5 Score=26.98 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=21.6
Q ss_pred CcccCcCccccccCCeecCCCCcccHHHHHHHHHc-CCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-GNTTCPVTRS 60 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~cp~~~~ 60 (418)
+.|.||.|++-+... .+.+.+.++...+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 368999988732211 2334444444332 2456999965
No 354
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.59 E-value=1.2e+02 Score=30.64 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=44.7
Q ss_pred ChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHhh
Q 014817 326 TVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-----CTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 326 ~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~l~~~ 398 (418)
.++.++..|-+ ......+.+-.++.||++ +..... .+..|..+|..+ .+...-+-|..+++++...
T Consensus 214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~-S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLK-SHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred HHHHHHHHHhhHhcccccchhHHHHHHHHHc-CccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 34456666644 444677889999999998 332222 467788888321 2456677899999998887
Q ss_pred C
Q 014817 399 W 399 (418)
Q Consensus 399 ~ 399 (418)
.
T Consensus 287 ~ 287 (464)
T PF11864_consen 287 S 287 (464)
T ss_pred c
Confidence 6
No 355
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=70.76 E-value=1.1 Score=39.64 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=35.2
Q ss_pred CcccCcCccc-cccCCe----ecC-CCCcccHHHHHHHHHcCCCCCC--CCCCCC
Q 014817 16 YHFRCPISLE-LMCDPV----TVC-TGQTYDRPSIESWVATGNTTCP--VTRSPL 62 (418)
Q Consensus 16 ~~~~Cpi~~~-~~~dPv----~~~-~g~~~~r~~i~~~~~~~~~~cp--~~~~~l 62 (418)
.+-.||+|+. -+-+|= +.| |=|..|-+|+.+-|..|...|| -|++.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999973 344442 334 9999999999999999999999 565443
No 356
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=70.17 E-value=1.3 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=23.7
Q ss_pred ccCCeecCC-CCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 27 MCDPVTVCT-GQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 27 ~~dPv~~~~-g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
|.+--++.| .|-.|..|+...+.. +..||+|+.+++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 455556655 588899999998876 7889999988753
No 357
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=69.68 E-value=40 Score=27.84 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=57.7
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHH-HHHHHhhC--CCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILK-ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQ-LLLLVQSD--CTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~-L~~ll~~~--~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|-+.|.. .++.++..|+.+|-.+.. .......++...+.+.. |+.++... .+..++.+...+++..+..-+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45567777764 588899999999888887 44577888888899987 89999632 246889999999988887543
No 358
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.62 E-value=52 Score=37.52 Aligned_cols=114 Identities=21% Similarity=0.150 Sum_probs=75.3
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
+.+..++.+|..+ ...++..|+.+|.++..-+ ...+....+-..+-.-+...+..+|+.|+..++-.+
T Consensus 816 ~yLk~Il~~l~e~-------~ialRtkAlKclS~ive~D---p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfv-- 883 (1692)
T KOG1020|consen 816 PYLKLILSVLGEN-------AIALRTKALKCLSMIVEAD---PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFV-- 883 (1692)
T ss_pred HHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHhcC---hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhh--
Confidence 4566777777755 4789999999999887655 223334444555556677888999999999999774
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKA 279 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i 279 (418)
...++.-.... ..+..=+.+. ...+++.+.+.|+.+|...++-..+
T Consensus 884 l~~~e~~~qyY------~~i~erIlDt--gvsVRKRvIKIlrdic~e~pdf~~i 929 (1692)
T KOG1020|consen 884 LSIPELIFQYY------DQIIERILDT--GVSVRKRVIKILRDICEETPDFSKI 929 (1692)
T ss_pred hccHHHHHHHH------HHHHhhcCCC--chhHHHHHHHHHHHHHHhCCChhhH
Confidence 34444333321 2222222233 4789999999999999765544433
No 359
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=69.42 E-value=2.3 Score=40.44 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=34.5
Q ss_pred cccCcCccccccCC----eecCCCCcccHHHHHHHHHc-CCCCCCCCC
Q 014817 17 HFRCPISLELMCDP----VTVCTGQTYDRPSIESWVAT-GNTTCPVTR 59 (418)
Q Consensus 17 ~~~Cpi~~~~~~dP----v~~~~g~~~~r~~i~~~~~~-~~~~cp~~~ 59 (418)
++.|-.|++.+--- --+||.|.|--+|+++++.+ +..+||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 46799999876432 25699999999999999874 467799997
No 360
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=68.74 E-value=2.2 Score=28.31 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=12.2
Q ss_pred CCCCCcccCcCccc
Q 014817 12 VQIPYHFRCPISLE 25 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~ 25 (418)
.++|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 37899999999975
No 361
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=68.48 E-value=2.9 Score=23.52 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=12.4
Q ss_pred cCcCccccccCCeec-C-CCCccc
Q 014817 19 RCPISLELMCDPVTV-C-TGQTYD 40 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~-~-~g~~~~ 40 (418)
.||-|......-... + |||.|.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCCc
Confidence 477777665444443 3 666663
No 362
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.38 E-value=1.3e+02 Score=31.31 Aligned_cols=92 Identities=13% Similarity=-0.078 Sum_probs=48.7
Q ss_pred chHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh-cCCCChhhhHHHHHHHHHHc
Q 014817 196 KITSLSSLLFH----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK-NLSSYPRGLKVGIKALFALC 270 (418)
Q Consensus 196 ~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~aL~~L~ 270 (418)
.++.|...|.. ++.+.+...+.+|+|+ . ....++.|...+. +...+..++..|+++|..++
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~---g-----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNA---G-----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhcc---C-----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 44555544432 3444455566666666 1 1234555555555 22224578889999999887
Q ss_pred cccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHH
Q 014817 271 LVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVE 308 (418)
Q Consensus 271 ~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~ 308 (418)
...... +-+.|+.+..+. +.+++..|..+|.
T Consensus 509 ~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 509 KRDPRK-------VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HhCchH-------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 533221 233456666543 3455444444443
No 363
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=67.58 E-value=26 Score=36.62 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=87.6
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817 194 ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 194 ~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~ 273 (418)
..+++.|..-++..+..+++.++..+-.+ +..-+ ...+. .-++|.|-++.-... +..++.+++-++..+.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv---~e~iD--~~~vk-~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~--- 457 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTV---AESID--VPFVK-QAILPRLKNLAFKTT-NLYVKVNVLPCLAGLI--- 457 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHH---HHhcc--HHHHH-HHHHHHhhcchhccc-chHHHHHHHHHHHHHH---
Confidence 34566667777777889999999988888 33333 22223 457888888744443 7888999999999887
Q ss_pred ccHHHHHHcCchHHHHHH---hcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHH
Q 014817 274 QTRYKAVAAGAAETLVDR---LADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE 343 (418)
Q Consensus 274 ~n~~~i~~~G~v~~Lv~l---L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~ 343 (418)
..+-..-+++.+..+ .+..++.+....+.+..++.-..-+...+..+ .++|.++.+..++.-...+
T Consensus 458 ---q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~-~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 458 ---QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAE-NVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred ---HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehh-hhhhhhhhhhhcccccHHH
Confidence 233333444444444 44667888888888887777443332333443 7888888877665544433
No 364
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.44 E-value=70 Score=32.74 Aligned_cols=119 Identities=8% Similarity=0.073 Sum_probs=72.1
Q ss_pred hhhHHHHHHH-hhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhH
Q 014817 239 DEIFEGVIDI-LKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAG 316 (418)
Q Consensus 239 ~g~i~~Lv~l-L~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~ 316 (418)
.|++..|++. ..++ +.+++++|.-||.-+|..+.+ .++..+++|... +..++...+-+|..-|.+..
T Consensus 550 ~~vv~~lLh~avsD~--nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G- 618 (926)
T COG5116 550 LGVVSTLLHYAVSDG--NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG- 618 (926)
T ss_pred chhHhhhheeecccC--chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc-
Confidence 5677778877 4555 889999999999888876654 456678888644 45565555556654443221
Q ss_pred HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHH
Q 014817 317 CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLV 376 (418)
Q Consensus 317 ~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll 376 (418)
-+. ++..|-.++...+.-+++.|+-++.-|.. .+++.-..+ .+++.++.+++
T Consensus 619 ~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI 671 (926)
T COG5116 619 DKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVI 671 (926)
T ss_pred cHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHH
Confidence 111 12233334555777788888877776654 344332221 34566666666
No 365
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.11 E-value=1.7e+02 Score=30.65 Aligned_cols=208 Identities=13% Similarity=0.035 Sum_probs=102.6
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcC---hhhhhHHhh----cC---hHHHHHHHhhcccccccCCChhHHHH
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDS---DKNRSLISS----HN---VRAILSQVFFTNINVKTASSPELAHE 172 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~---~~~~~~i~~----~g---~i~~Lv~lL~~~~~~~~~~~~~v~~~ 172 (418)
.+..|+..|..-+ ...+..+..-.... ...|..+.+ .| ++..+.+++.+..- ...-...
T Consensus 348 ~f~~Lv~~lr~l~------~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~-----~~~ea~~ 416 (618)
T PF01347_consen 348 KFSRLVRLLRTLS------YEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL-----TDDEAAQ 416 (618)
T ss_dssp HHHHHHHHHTTS-------HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S------HHHHHH
T ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-----CHHHHHH
Confidence 4566676666542 22344444433332 445555544 34 56666777765421 1111222
Q ss_pred HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccchh-------h-hhHhhchhh
Q 014817 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFH----SSIEVRVNSAALIEIVLAGMRSQE-------L-RAQISNLDE 240 (418)
Q Consensus 173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s~~~~-------~-~~~i~~~~g 240 (418)
.+..|...... ... ..+..+..++++ .++.++..|.-++..|+....... . ...+ . ..
T Consensus 417 ~l~~l~~~~~~--Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~-~-~~ 486 (618)
T PF01347_consen 417 LLASLPFHVRR--PTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI-I-EK 486 (618)
T ss_dssp HHHHHHHT-------H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS----GG
T ss_pred HHHHHHhhcCC--CCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh-H-HH
Confidence 22223322211 112 234555555543 346677777777777742111110 0 1122 1 34
Q ss_pred hHHHHHHHhh----cCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC---CcccHHHHHHHHHHHhcC
Q 014817 241 IFEGVIDILK----NLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF---DKCDAERALATVELLCRI 313 (418)
Q Consensus 241 ~i~~Lv~lL~----~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~ 313 (418)
.++.|...+. .+ +...+..++.||.|+-. ...++.|..++... ...++..|+.+|..++..
T Consensus 487 ~~~~l~~~l~~~~~~~--~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRG--DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GTHHHHHHHHHHHHTT---HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHhhcc--CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 6677777666 23 56788899999999843 23566677777654 345667788888876532
Q ss_pred HhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHH
Q 014817 314 PAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAA 351 (418)
Q Consensus 314 ~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~ 351 (418)
.. .. +.+.|+.++.+ .+..++-.|..+|..
T Consensus 555 ~~--~~------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 CP--EK------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -H--HH------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred Cc--HH------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 21 11 22355666665 566677777766655
No 366
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=66.92 E-value=4.1 Score=44.50 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=35.6
Q ss_pred cCcCcccc-----ccCCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLEL-----MCDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.||++- .-+|-+- .||.-.||.|.|-=.++|+..||+|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 79999985 3345544 699999999996656788999999997764
No 367
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=66.73 E-value=61 Score=27.37 Aligned_cols=144 Identities=12% Similarity=0.103 Sum_probs=78.4
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGC 317 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~ 317 (418)
...++.|.++|+++. +..++..++++|..|-.-+..+.+....+.=... -...+.......+ ...... ..++.-
T Consensus 9 P~LL~~L~~iLk~e~-s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQ-SQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL-PMMGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH-hhccCCCchHHHH
Confidence 457888999999885 7899999999999998777766664332111000 0011111111111 111111 122222
Q ss_pred HHHHhccCChHHHHHHHhcCChH-HHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817 318 AEFAEHALTVPLLVKTILKISDR-ATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~~~~~~-~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l 395 (418)
-. -++..|+..++..+.. -...++.++.++.+. ...+.. .=..+++.++..++.. ++..++--..-|..|
T Consensus 84 ~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~--~L~~viP~~l~~i~~~-~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVP--YLPQVIPIFLRVIRTC-PDSLREFYFQQLADL 155 (160)
T ss_pred HH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchh--HHHHHhHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 22 3456788877763332 234667777777751 111211 1134788999999755 667777655444444
No 368
>PLN02436 cellulose synthase A
Probab=66.69 E-value=4.2 Score=44.31 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=35.8
Q ss_pred cCcCccccc-----cCCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELM-----CDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~-----~dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.||++-. -+|-+- .||.-.||.|.+-=.++|+..||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 899999864 345544 599999999996656778899999997764
No 369
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.58 E-value=37 Score=35.46 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=74.5
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc------CCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD------ADKITSLSSLLFHSSIEVRVNSAALIEI 221 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~~L~~~~~~~~~~a~~~L~~ 221 (418)
...++.+|.+. +...+...+.+.+|+..+- .-..++++ ...+..|++.|...++-+|..|..++..
T Consensus 301 ~~~~~~LLdse-------s~tlRc~~~EicaN~V~~~-~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~k 372 (1128)
T COG5098 301 YEHFDELLDSE-------SFTLRCCFLEICANLVEHF-KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEK 372 (1128)
T ss_pred HHHHHHHhccc-------chhHHHHHHHHHHHHHHHH-hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 45677788766 4566776677777765432 11112222 3456777777788899999999988888
Q ss_pred HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
+ . +-+....+....++...++-|++. +.-++++|...+..|-..
T Consensus 373 i---f--dl~sk~~~~r~ev~~lv~r~lqDr--ss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 373 I---F--DLNSKTVGRRHEVIRLVGRRLQDR--SSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred H---H--hCcccccchHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhc
Confidence 8 2 233334444456788888888888 788999999999988543
No 370
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=66.26 E-value=2.4 Score=27.74 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=9.3
Q ss_pred CCCCCcccCcCccc
Q 014817 12 VQIPYHFRCPISLE 25 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~ 25 (418)
.++|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 47899999999975
No 371
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.92 E-value=1.1e+02 Score=28.19 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=46.9
Q ss_pred hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
..+..|+++|.++ .+-.+...+..|..+-..-+.+.. ..++.+.+|+++|.. +...+|+.+|....
T Consensus 188 ~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t---~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 188 QILTFLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT---DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC---ccHHHHHHHHHHHH
Confidence 3556677888877 678888888888888766554433 556688888888875 45567777776544
No 372
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=65.55 E-value=1.4e+02 Score=31.29 Aligned_cols=187 Identities=17% Similarity=0.064 Sum_probs=101.0
Q ss_pred HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817 142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEI 221 (418)
Q Consensus 142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~ 221 (418)
++..-.++.|+..+..++. ...+..-.+..-.-+.. . + ...++++.|+++....+..+|..-+.-+-.
T Consensus 289 i~~~kvlp~Ll~~~~~g~a-----~~~~ltpl~k~~k~ld~-~-e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~ 356 (690)
T KOG1243|consen 289 IIASKVLPILLAALEFGDA-----ASDFLTPLFKLGKDLDE-E-E-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEK 356 (690)
T ss_pred HHHHHHHHHHHHHhhcccc-----chhhhhHHHHhhhhccc-c-c-----cccchhhhHHHHhcCcchHHHHHHHHhHHH
Confidence 4445566777766655431 23333333332112111 1 2 456789999999999999998876555554
Q ss_pred HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817 222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE 301 (418)
Q Consensus 222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 301 (418)
.. +..-..+.. .-++|.+..-+.+. ++..++..+..+.-|+.--.-+ -+....+..+-++-.+.+..++.
T Consensus 357 ~i-----~~Lt~~~~~-d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irt 426 (690)
T KOG1243|consen 357 YI-----DHLTKQILN-DQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRT 426 (690)
T ss_pred Hh-----hhcCHHhhc-chhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccc
Confidence 42 222334434 45888888888888 8999999999999987543222 11111222222222334556666
Q ss_pred HHHHHHHHHhcCHhHHHHHHhccCC-hHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 302 RALATVELLCRIPAGCAEFAEHALT-VPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 302 ~a~~~L~~L~~~~~~~~~i~~~~g~-i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
+..-+|..++.+... .+.+ ++ +-++...+++.-...+..++.+++..+.
T Consensus 427 ntticlgki~~~l~~---~~R~-~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 427 NTTICLGKIAPHLAA---SVRK-RVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred cceeeecccccccch---hhhc-cccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 666666666543211 1121 21 1223333444444445555555555443
No 373
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.03 E-value=83 Score=30.69 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh-cccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc-----
Q 014817 120 SRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF-TNINVKTASSPELAHESLALLVMFPLTETECMEIASD----- 193 (418)
Q Consensus 120 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~----- 193 (418)
.|..|...|+.+++..+..-..++ .+.+..++.-.. ++. .+..-.+.|+..+..|+......+..+.+
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~-----~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPS-----NNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TT-----T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCc-----ccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 467788888888864322211122 122222222111 222 25667788888777666443221211111
Q ss_pred -------CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHH
Q 014817 194 -------ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKAL 266 (418)
Q Consensus 194 -------~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL 266 (418)
.-++|.|. -=.+..+-.+..|++.+..+ . +.-.++.+ .++++.|+..|.++ +.-+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~F---r-~~l~~~~l---~~~~~~l~~~L~~~--~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTF---R-NQLPKEQL---LQIFPLLVNHLQSS--SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHH---G-GGS-HHHH---HHHHHHHHHHTTSS---HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHH---H-hhCCHHHH---HHHHHHHHHHhCCC--CcchhhhhhhhC
Confidence 11222222 00133567778888888888 2 22223344 45899999999998 777877777664
No 374
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=64.82 E-value=1.1e+02 Score=32.85 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=92.6
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAE 319 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~ 319 (418)
.-..+...+.++ ++......+.++.+++.-..-...- ...-++.-..-....-..+......+|..++. .++....
T Consensus 442 lW~~l~~~~~~~--~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 442 LWKALLKSLDSD--NPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHhhcCC--ChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 444555666655 6777778888888887544311110 11112222222222223445567778888884 5677777
Q ss_pred HHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHHhcChHHHH-------HHHHhh---CCCHHHHHH
Q 014817 320 FAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAVSAGVLTQL-------LLLVQS---DCTDRAKRK 387 (418)
Q Consensus 320 i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~~~g~i~~L-------~~ll~~---~~~~~~~~~ 387 (418)
+....++...++.++.+++..+.+.|..+|..+.. +..+..+++.+...-..| -.+... .+-++.-+.
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~ 598 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRC 598 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 77777999999999999999999999999999887 333455555554432222 122211 113455556
Q ss_pred HHHHHHHHHhh
Q 014817 388 AQLLLKLLRDS 398 (418)
Q Consensus 388 A~~~L~~l~~~ 398 (418)
...+|+.|+..
T Consensus 599 ~~DIi~~Lcdp 609 (727)
T PF12726_consen 599 LMDIIEVLCDP 609 (727)
T ss_pred HHHHHHHHcCC
Confidence 66666666654
No 375
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.57 E-value=44 Score=27.45 Aligned_cols=74 Identities=12% Similarity=0.245 Sum_probs=55.6
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh--hhHHHHHHHHHHc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR--GLKVGIKALFALC 270 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~--~~~~a~~aL~~L~ 270 (418)
.++..|.+-|.++++.++..|+.+|-.+.. --.+.....++. ..++..|..++.+....+. +++.++..|...+
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvk-Ncg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVK-NCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHH-HSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 356788888999999999999999999952 122466677765 5799999999987642232 7888888777665
No 376
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.43 E-value=45 Score=35.13 Aligned_cols=31 Identities=6% Similarity=-0.043 Sum_probs=16.7
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
.|..+++|+... |+.|+..|+.+|+..+.+.
T Consensus 590 ~~s~V~lLses~------N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 590 LPSTVSLLSESY------NPHVRYGAAMALGIACAGT 620 (929)
T ss_pred chHHHHHHhhhc------ChhhhhhHHHHHhhhhcCC
Confidence 345555555443 5566666666666544443
No 377
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.85 E-value=1.7e+02 Score=29.53 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=49.5
Q ss_pred hHHHHHHhcC--CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhcCC
Q 014817 285 AETLVDRLAD--FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK------ISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 285 v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~------~~~~~~~~A~~~L~~l~~~~ 356 (418)
++.++..|.+ +..+....+-.++.||+++.-+...+ ..|...|.. .+..+..-|+..|..+..+.
T Consensus 215 l~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i-------~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 215 LSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAI-------RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHH-------HHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 3446666643 23466677888889998766554443 345555632 34445567777776665544
Q ss_pred HHHHHHHHhcC---hHHHHHHHHhhC
Q 014817 357 ERCQRDAVSAG---VLTQLLLLVQSD 379 (418)
Q Consensus 357 ~~~~~~~~~~g---~i~~L~~ll~~~ 379 (418)
++.+..-+... +++.|...++.+
T Consensus 288 ~~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 288 GEQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred ccCCcceecccHHHHHHHHHHHHhCC
Confidence 33222222222 666777777655
No 378
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.75 E-value=12 Score=29.30 Aligned_cols=45 Identities=24% Similarity=0.158 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccH
Q 014817 256 PRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~ 300 (418)
.-........|..|+..++--..+++.|+++.|+.||.+.+..+.
T Consensus 60 E~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 60 EVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345667788899999999888899999999999999998766553
No 379
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.71 E-value=1.2e+02 Score=27.91 Aligned_cols=217 Identities=10% Similarity=0.053 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~ 243 (418)
+..++..|+..|......-+ +.. ....-+..|+....+ .+......++..+..| ..........+ ...+.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp--~~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L---~~~~~~~~~~~--~~i~~ 83 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLP--PDF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLAL---VKMKNFSPESA--VKILR 83 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCC--Hhh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH---HhCcCCChhhH--HHHHH
Confidence 56788888877765432211 111 222224555555432 3455555557777777 32222111111 12334
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcC---HhHHHH
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRI---PAGCAE 319 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~---~~~~~~ 319 (418)
.+.+-..........|..+...|..|..+......-...+.+..+++++. +.|++....+-.++..+... ++..+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~ 163 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAED 163 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 44332222211245677777888887655321111122356777777776 44777777777777666532 222333
Q ss_pred HHhccCChHHHHHHHhc---CCh-H-HHHHHHHHHHH-HhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817 320 FAEHALTVPLLVKTILK---ISD-R-ATEYAAGALAA-LCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK 393 (418)
Q Consensus 320 i~~~~g~i~~Lv~~l~~---~~~-~-~~~~A~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 393 (418)
+.+. +..-..+-.+ +++ . .++.=..+|.+ ++. ++..... +++.|++=|.++ ++.+|.-+..+|.
T Consensus 164 lFd~---~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~-----~~p~LleKL~s~-~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 164 LFDV---FSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPF-----AFPLLLEKLDST-SPSVKLDSLQTLK 233 (262)
T ss_pred HHHH---hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHH-----HHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 3321 1111111111 122 1 22222233333 443 6665554 789999999888 8889999999999
Q ss_pred HHHhhCC
Q 014817 394 LLRDSWP 400 (418)
Q Consensus 394 ~l~~~~~ 400 (418)
.+...+.
T Consensus 234 ~c~~~y~ 240 (262)
T PF14500_consen 234 ACIENYG 240 (262)
T ss_pred HHHHHCC
Confidence 8888765
No 380
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.88 E-value=1.4e+02 Score=28.44 Aligned_cols=164 Identities=13% Similarity=0.032 Sum_probs=115.2
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHcc-cc-ccHHHHHHc--CchHHHHHHhcCC----Cc---------ccHHHHH
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCL-VK-QTRYKAVAA--GAAETLVDRLADF----DK---------CDAERAL 304 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-~~-~n~~~i~~~--G~v~~Lv~lL~~~----~~---------~~~~~a~ 304 (418)
+..+.+.|... .......+++.|.+++. +. .....+.+. --.+.+..++... .. .++...+
T Consensus 58 ~k~lyr~L~~~--~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSS--KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcC--cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 56667777777 67778899999999988 44 345555543 3445666676421 11 5556666
Q ss_pred HHHHHHh--cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH-HhcC---CHHHHHHHHhcChHHHHHHHHhh
Q 014817 305 ATVELLC--RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA-LCSA---SERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 305 ~~L~~L~--~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~-l~~~---~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
..+..+. .++..+..+....+.+..+.+-|..++..+-...+.+|+. +... .+..+..+.++..+..|..+-..
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 6555444 4677888888876788888888888888888888888885 4442 34566778888899999997765
Q ss_pred CCCH----HHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014817 379 DCTD----RAKRKAQLLLKLLRDSWPQDSIGNSDD 409 (418)
Q Consensus 379 ~~~~----~~~~~A~~~L~~l~~~~~~~~~~~~~~ 409 (418)
. ++ .+++.+-..|..++-... ...|++.+
T Consensus 216 ~-~~~~~~~~~~~vh~fL~~lcT~p~-~Gv~f~d~ 248 (330)
T PF11707_consen 216 D-GEDEKSSVADLVHEFLLALCTDPK-HGVCFPDN 248 (330)
T ss_pred c-CCcccchHHHHHHHHHHHHhcCCC-cccccCCC
Confidence 5 44 889999999999887543 44666643
No 381
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=62.78 E-value=1.5e+02 Score=28.43 Aligned_cols=210 Identities=13% Similarity=0.053 Sum_probs=100.7
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
..++..|+.++..+. |+.+....+.+|..-.. .. ..-.....+..+.+=|++..+.+|..-...+...
T Consensus 21 ~~i~~~l~~~~~KE~------nE~aL~~~l~al~~~~~---~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~-- 88 (339)
T PF12074_consen 21 SKIVQGLSPLLSKES------NEAALSALLSALFKHLF---FL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEA-- 88 (339)
T ss_pred HHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHH---Hh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--
Confidence 345677777777664 56666666666552110 00 0111234456666666666666787766666666
Q ss_pred ccc---chhhhhHhhchhhhHHHHHHHhhcCCCCh--hh----hHHHHHHHHHHcccc--ccHH-----HHHHcCchHHH
Q 014817 225 GMR---SQELRAQISNLDEIFEGVIDILKNLSSYP--RG----LKVGIKALFALCLVK--QTRY-----KAVAAGAAETL 288 (418)
Q Consensus 225 ~s~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~--~~----~~~a~~aL~~L~~~~--~n~~-----~i~~~G~v~~L 288 (418)
.. +.+....+ ..+++.|++.++....++ .. ...|...+. +.... .... ..+-.+-=|.+
T Consensus 89 -~~~~~~~~~~~~~---~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ 163 (339)
T PF12074_consen 89 -LWESPNSDSLKFA---EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSF 163 (339)
T ss_pred -HhhccCchHHHHH---HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcch
Confidence 22 22222222 358888888886431122 11 111222222 21111 0000 00000000000
Q ss_pred H---HHhcC-CCcccHHHHHHHHHHHhcCHh--HHHHHHhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHH
Q 014817 289 V---DRLAD-FDKCDAERALATVELLCRIPA--GCAEFAEHALTVPLLVKTILKI--SDRATEYAAGALAALCSASERCQ 360 (418)
Q Consensus 289 v---~lL~~-~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~g~i~~Lv~~l~~~--~~~~~~~A~~~L~~l~~~~~~~~ 360 (418)
+ ++... .+.+.....+.+|..+..... ....... ..-..++.++.+. +..+++.|..+|..+...++..
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~--~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~- 240 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSS--AWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL- 240 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-
Confidence 0 11111 223333445555555553211 1111111 2234677777776 8999999999999988867664
Q ss_pred HHHHhcChHHHHHHHHh
Q 014817 361 RDAVSAGVLTQLLLLVQ 377 (418)
Q Consensus 361 ~~~~~~g~i~~L~~ll~ 377 (418)
+...++..+-..+.
T Consensus 241 ---l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 241 ---LSKSLISGLWKWLS 254 (339)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 33345556655554
No 382
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=62.15 E-value=33 Score=28.53 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=51.0
Q ss_pred CCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHH
Q 014817 95 PKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESL 174 (418)
Q Consensus 95 p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~ 174 (418)
|--|.+..+...+++.|+.+.... ....+.-|.+-..-. ..-..-++++++..++ ..... ...-....|+
T Consensus 15 pPlPL~a~Qt~~lielLk~~~~~~--~~~lldLL~~RV~PG-VD~AA~VKA~FL~~ia---~g~~~----~~~Is~~~Av 84 (154)
T PF11791_consen 15 PPLPLNAEQTAELIELLKNPPAGE--EAFLLDLLTNRVPPG-VDEAAYVKAEFLAAIA---KGEIS----SPLISPAEAV 84 (154)
T ss_dssp ------HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--T-T-HHHHHHHHHHHHHH---TTSS-----BTTB-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCcc--HHHHHHHHHhcCCCC-CChHHHHHHHHHHHHH---cCCcc----CCCcCHHHHH
Confidence 344667889999999999874322 223344443322110 0111123333333222 22111 0122356666
Q ss_pred HHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817 175 ALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVL 223 (418)
Q Consensus 175 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~ 223 (418)
..|+-+-.+- -|.+|+.+|.+.+.++...|+.+|.+-.
T Consensus 85 ~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 85 ELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 7666554332 2899999999989999999999998873
No 383
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.08 E-value=30 Score=26.25 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR 312 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 312 (418)
+...+..|.++ .+.++..++..|.+|..... ...+-..+++..++..|.+.+.-+--+|...|..|+.
T Consensus 5 ~~~al~~L~dp--~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDP--LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCC--CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34455566666 78899999999999987766 2222235677788888888888888889999988884
No 384
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=61.94 E-value=67 Score=29.95 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=47.3
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhh-hHhhchhhhHH----HHHHHhh--------cCCCChhhhHH
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNLDEIFE----GVIDILK--------NLSSYPRGLKV 261 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~-~~i~~~~g~i~----~Lv~lL~--------~~~~~~~~~~~ 261 (418)
-.+|+++.++.+.+++.|..++.+|..+. ....... ..+.. .|..+ +|..+|. +. +......
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll--~~~~~~~~~~L~~-tGl~~v~~~al~~~L~~LP~~tp~~~--s~~Ll~~ 193 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLL--EKVPAAEWDILRR-TGLFSVFEDALFPCLYYLPPITPEDE--SLELLQA 193 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHH--HhCChhhhHHHHH-cChHHHHHHHHHHHhhcCCCCCCchh--hHHHHHH
Confidence 46899999999999999999999999995 2222222 11211 33333 3444443 22 4567788
Q ss_pred HHHHHHHHcc
Q 014817 262 GIKALFALCL 271 (418)
Q Consensus 262 a~~aL~~L~~ 271 (418)
|..+|..|..
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 8888888853
No 385
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=61.79 E-value=6.8 Score=23.34 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=7.8
Q ss_pred CCCCCCCCCCC
Q 014817 51 GNTTCPVTRSP 61 (418)
Q Consensus 51 ~~~~cp~~~~~ 61 (418)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35679999764
No 386
>PHA03096 p28-like protein; Provisional
Probab=61.74 E-value=5.4 Score=37.15 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.3
Q ss_pred cCcCccccccCC-------eec-CCCCcccHHHHHHHHHcC--CCCCCCCC
Q 014817 19 RCPISLELMCDP-------VTV-CTGQTYDRPSIESWVATG--NTTCPVTR 59 (418)
Q Consensus 19 ~Cpi~~~~~~dP-------v~~-~~g~~~~r~~i~~~~~~~--~~~cp~~~ 59 (418)
.|-||.+.-.+- -++ .|.|.||-.||..|.... ..+||.|+
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 588888754432 144 699999999999997642 34466654
No 387
>PHA02862 5L protein; Provisional
Probab=61.49 E-value=8.5 Score=31.51 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=31.5
Q ss_pred cCcCccccccCCeecCCCC-----cccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQ-----TYDRPSIESWVA-TGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~-~~~~~cp~~~~~l~ 63 (418)
.|=||.+.=.+. ..||.. -.-+.|+++|++ .+...||.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 488888875444 466642 233899999997 34667999998875
No 388
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=61.32 E-value=1.1e+02 Score=31.75 Aligned_cols=209 Identities=14% Similarity=0.064 Sum_probs=107.2
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHh----hcc---cCCchHHHHHHhcCCCHHHHHHHHHHH
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECME----IAS---DADKITSLSSLLFHSSIEVRVNSAALI 219 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~----~i~---~~g~i~~Lv~~L~~~~~~~~~~a~~~L 219 (418)
.+-.|+++|+.- +.+-.+....-+.. .. ...|. .+. ...++..+.+.+.++.....+ ++.++
T Consensus 312 ~f~~lv~~lR~~-------~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~e-a~~~~ 380 (574)
T smart00638 312 KFLRLVRLLRTL-------SEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLE-AAQLL 380 (574)
T ss_pred HHHHHHHHHHhC-------CHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHH
Confidence 455677777665 34444444443332 11 12233 232 345677788888776532222 23333
Q ss_pred HHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC--CChhhhHHHHHHHHHHc----cccccHHHHHHcCchHHHHHHhc
Q 014817 220 EIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS--SYPRGLKVGIKALFALC----LVKQTRYKAVAAGAAETLVDRLA 293 (418)
Q Consensus 220 ~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~----~~~~n~~~i~~~G~v~~Lv~lL~ 293 (418)
..+. ..... -+...+..+..++++.. .++.+...|+-++.+|. .+.+.+...+-...++.+.+.|.
T Consensus 381 ~~~~--~~~~~------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~ 452 (574)
T smart00638 381 AVLP--HTARY------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQ 452 (574)
T ss_pred HHHH--Hhhhc------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Confidence 3331 11000 11346777788887541 13456666666666664 23332222233346677777664
Q ss_pred C----CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh-c--CChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817 294 D----FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL-K--ISDRATEYAAGALAALCSASERCQRDAVSA 366 (418)
Q Consensus 294 ~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~ 366 (418)
. .+..-+...+.+|.|+.. ...++.+...+. . .+..++..|+++|..++...++..
T Consensus 453 ~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v------ 515 (574)
T smart00638 453 QAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV------ 515 (574)
T ss_pred HHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH------
Confidence 3 233333456666666553 234445555554 2 456789999999998876333322
Q ss_pred ChHHHHHHHHhh-CCCHHHHHHHHHHHH
Q 014817 367 GVLTQLLLLVQS-DCTDRAKRKAQLLLK 393 (418)
Q Consensus 367 g~i~~L~~ll~~-~~~~~~~~~A~~~L~ 393 (418)
-+.|+.+..+ .-+.++|-.|..+|-
T Consensus 516 --~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 516 --QEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred --HHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 2445555543 225556655554443
No 389
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.36 E-value=8.6 Score=29.73 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCCCcccCcCccccc----cCCeecC-CCCcccHHHHHH
Q 014817 13 QIPYHFRCPISLELM----CDPVTVC-TGQTYDRPSIES 46 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~----~dPv~~~-~g~~~~r~~i~~ 46 (418)
++-...+||-|+.-| |+|++.| ||.+|-|+..+.
T Consensus 5 eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 5 ELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 344456788888654 6788886 888887766554
No 390
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.25 E-value=1.5e+02 Score=28.08 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhH-HHH
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAG-CAE 319 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~ 319 (418)
+...+..|.+. +.+....++..|..|+..+. ....+... ++-.+++-+.+....+-..|+.++..+...-.. ...
T Consensus 90 l~~~l~~L~s~--dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSD--DWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchH--HHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 45555555555555554432 22222211 334444555544445556666666666643222 122
Q ss_pred HHhccCChHHHHHHHhc---CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817 320 FAEHALTVPLLVKTILK---ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL 390 (418)
Q Consensus 320 i~~~~g~i~~Lv~~l~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~ 390 (418)
..+ + .+..++.+ ++.-+++-|-.+|..+...-... .++++|+..+++. +++++.+++.
T Consensus 167 ~ld--~---lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~ 227 (334)
T KOG2933|consen 167 ELD--D---LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAAL 227 (334)
T ss_pred HHH--H---HHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhc
Confidence 111 2 22233332 45567888888888877622111 1345666666555 6666665543
No 391
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=60.18 E-value=6.4 Score=42.90 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=36.0
Q ss_pred ccCcCcccc-----ccCCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLEL-----MCDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
-.|.||++- .-+|-+- .||.-.||.|.+-=.++|+..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 369999985 3445554 699999999996556778999999998765
No 392
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=59.82 E-value=7.1 Score=37.56 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=24.7
Q ss_pred ecCCCCccc-----HHHHHHHHHc------------CCCCCCCCCCCCCCCC
Q 014817 32 TVCTGQTYD-----RPSIESWVAT------------GNTTCPVTRSPLTDFT 66 (418)
Q Consensus 32 ~~~~g~~~~-----r~~i~~~~~~------------~~~~cp~~~~~l~~~~ 66 (418)
.-+|+.-|| .+|+-+||.. +...||.|+++|.-.|
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 446767775 5899999852 2346999999886444
No 393
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=59.64 E-value=7.2 Score=25.43 Aligned_cols=39 Identities=28% Similarity=0.593 Sum_probs=21.1
Q ss_pred CcCccccccC--CeecCCCCc-----ccHHHHHHHHH-cCCCCCCCC
Q 014817 20 CPISLELMCD--PVTVCTGQT-----YDRPSIESWVA-TGNTTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~d--Pv~~~~g~~-----~~r~~i~~~~~-~~~~~cp~~ 58 (418)
|-||.+.-.+ |++.||+-+ .=+.|+++|+. .+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 3455544332 677787532 23789999987 456678876
No 394
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=58.52 E-value=6.5 Score=27.41 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHc
Q 014817 39 YDRPSIESWVAT 50 (418)
Q Consensus 39 ~~r~~i~~~~~~ 50 (418)
|||.|+.+|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 395
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=58.46 E-value=12 Score=23.92 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=21.0
Q ss_pred CcCccccccCCeecC---CCCcccHHHHHHHHHcCC-CCCCCC
Q 014817 20 CPISLELMCDPVTVC---TGQTYDRPSIESWVATGN-TTCPVT 58 (418)
Q Consensus 20 Cpi~~~~~~dPv~~~---~g~~~~r~~i~~~~~~~~-~~cp~~ 58 (418)
|-+|.++..-=+.=+ |+-.+=..|++.||.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 456666666555544 777788899999987533 469986
No 396
>PRK05978 hypothetical protein; Provisional
Probab=57.99 E-value=6.2 Score=32.80 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=22.2
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
+||-|++ |+-|. .+++- +..||.|+..+..
T Consensus 35 rCP~CG~----------G~LF~-----g~Lkv-~~~C~~CG~~~~~ 64 (148)
T PRK05978 35 RCPACGE----------GKLFR-----AFLKP-VDHCAACGEDFTH 64 (148)
T ss_pred cCCCCCC----------Ccccc-----ccccc-CCCccccCCcccc
Confidence 8999888 77774 44453 6779999988753
No 397
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=57.66 E-value=50 Score=29.11 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=46.5
Q ss_pred cHHHHHHcCchHHHHHHhcCC---C---------------cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHh
Q 014817 275 TRYKAVAAGAAETLVDRLADF---D---------------KCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~~~---~---------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~ 335 (418)
....+.+.|++..++++|..+ . ..+...+..+|...+. +.++...+..+ ++.++..+.
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~~ 111 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIFM 111 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----HH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHHH
Confidence 344445689999999999632 1 1345678888888885 45677777765 444444444
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.......-.+..+|..+-.++++....+.+.. +..++.++...+ .+..-..+|+.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC---CChHHHHHHhhhccc
Confidence 32223334667778888887887777665544 888888886642 222344555555554
No 398
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=50 Score=33.72 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
|.+|++.|+.+|+..+..+ ...+...|++|... +..+|...+.+|.-.+ .... . .-++..
T Consensus 565 nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiac---ag~G------~-~~a~di 625 (926)
T COG5116 565 NDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIAC---AGTG------D-KVATDI 625 (926)
T ss_pred chHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhh---cCCc------c-HHHHHH
Confidence 5567777777777666544 34566667777544 6777777777776663 2211 1 123444
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHc
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALC 270 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~ 270 (418)
|-.+..+. +.-+++.|+-++.-+-
T Consensus 626 L~~L~~D~--~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 626 LEALMYDT--NDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHHhhCc--HHHHHHHHHHHHHHHH
Confidence 55555665 5677777777777664
No 399
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=57.08 E-value=5 Score=37.07 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=25.8
Q ss_pred cCcCccccccCCe-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 19 ~Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
.|--|.....-=- +++|.|.||.+|-.. ...+.||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHH
Confidence 4555554322111 789999999999432 2256799997543
No 400
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=56.40 E-value=1.8e+02 Score=27.57 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=93.1
Q ss_pred hHHHHHHHhhcCC--CChhhhHHHHHHHHHHcc-ccccHHHHHHc-----------CchHHHHHHhcCC------CcccH
Q 014817 241 IFEGVIDILKNLS--SYPRGLKVGIKALFALCL-VKQTRYKAVAA-----------GAAETLVDRLADF------DKCDA 300 (418)
Q Consensus 241 ~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~-~~~n~~~i~~~-----------G~v~~Lv~lL~~~------~~~~~ 300 (418)
+|..|+.+.-... ..-..+.+|+.++..... +.+.+..+++. .....|+..|.+. |+--.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 5566666544331 134677788888887765 45566666521 1122355555422 22111
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHhc-cC----------ChHHHHHHHhc--C-ChHHHHHHHHHHHHHhc---CCHHHHHH
Q 014817 301 ERALATVELLC-RIPAGCAEFAEH-AL----------TVPLLVKTILK--I-SDRATEYAAGALAALCS---ASERCQRD 362 (418)
Q Consensus 301 ~~a~~~L~~L~-~~~~~~~~i~~~-~g----------~i~~Lv~~l~~--~-~~~~~~~A~~~L~~l~~---~~~~~~~~ 362 (418)
=-|+.+|..|. .+++.|+.+..- .| .+..+..+|.. . +.+ .+-.++.|.-|+. +++.....
T Consensus 115 wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d-~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 115 WFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSD-PRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T---HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCc-hhHHHHHHHHHHHHHhCCHHHHHH
Confidence 13555555555 566777766442 11 34455555544 1 212 3334444555554 88998888
Q ss_pred HHhcC-hHHHHHHHHh--hCCCHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014817 363 AVSAG-VLTQLLLLVQ--SDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDD 409 (418)
Q Consensus 363 ~~~~g-~i~~L~~ll~--~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~ 409 (418)
+.++| .++.|+.... ++.+.-++-.++.+|..+.++...+++....+
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~~R~~ 243 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPIPRAT 243 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-HHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCcCHHH
Confidence 88875 8999998763 23468899999999999999886666766544
No 401
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.35 E-value=12 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHH
Q 014817 36 GQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLR 74 (418)
Q Consensus 36 g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~ 74 (418)
-+|||..|.+.-+ +..||-|+..+......|...|.
T Consensus 28 EcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 28 ECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred eeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHHh
Confidence 4599999988654 46799999888766666654443
No 402
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=55.95 E-value=61 Score=31.45 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=60.9
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 325 LTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 325 g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.++..+.+.|.+.++.+...|+..|-.+.. -....+.++-.......|..++.+...++++++-+.++...++..
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 356678888888999999999999988877 335678889999999999999985548889988888888777643
No 403
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=54.07 E-value=4 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=9.2
Q ss_pred ccCcCccccccCCe
Q 014817 18 FRCPISLELMCDPV 31 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv 31 (418)
|.||+|+..|.++.
T Consensus 1 y~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 1 YKCPICGKSFSSKS 14 (23)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCccCCHH
Confidence 46777777766553
No 404
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=53.62 E-value=1e+02 Score=23.73 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=51.2
Q ss_pred HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817 281 AAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349 (418)
Q Consensus 281 ~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L 349 (418)
+.+.+..|++-....+....+.++..|..|+.++.+.+.+..- |++.-|-++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i-G~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI-GAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc-cHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456666777777777778899999999999999999999885 8888877755546666665554444
No 405
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.56 E-value=1.6e+02 Score=30.47 Aligned_cols=101 Identities=19% Similarity=0.118 Sum_probs=69.1
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHH
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA 318 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 318 (418)
.|.+..+++-++++ +..++...+..|.-++.+-......+..|.+..|.+-+.+..+-++..|+.+|..+-....+-+
T Consensus 90 ~~~~~h~lRg~esk--dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESK--DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCc--chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 46777777777777 7889999999998888766655666777888888888877778888888888876653222211
Q ss_pred HHHhccCChHHHHHHHhc-CChHHHHHHH
Q 014817 319 EFAEHALTVPLLVKTILK-ISDRATEYAA 346 (418)
Q Consensus 319 ~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~ 346 (418)
.... -.|+.++++ ++..++..|+
T Consensus 168 n~~~-----n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 168 NRIV-----NLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHHH-----HHHHHHHhcCcHHHHHHHHH
Confidence 1111 134445555 5666666554
No 406
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=53.37 E-value=1.9e+02 Score=26.74 Aligned_cols=125 Identities=15% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhcC-h---hhhhHHhhcChHH-HHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 122 LSALRRLRGLARDS-D---KNRSLISSHNVRA-ILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 122 ~~Al~~L~~l~~~~-~---~~~~~i~~~g~i~-~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
...++.|.+..+.+ + ..+.++.+.+++. -|+.+|.+... +..+...++.+|.+|.+.-+-. . +.
T Consensus 12 l~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~-----~~~l~~~~l~LLV~LT~P~~~~---~---~~ 80 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKD-----DDKLFLACLRLLVNLTWPIELL---V---ES 80 (266)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccC-----chHHHHHHHHHHHHhCCCHHHh---c---cC
Confidence 44555555544322 2 3355566666666 46666655432 5788899999999999876221 0 10
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC---------CCChhhhHHHHHHHH
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---------SSYPRGLKVGIKALF 267 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~---------~~~~~~~~~a~~aL~ 267 (418)
. ..+...+.........+ -.+|+.+.. .+++..++.++... ..+....+..+..++
T Consensus 81 ~--------~~~~~~~~~~~~l~~~l------~~yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiR 145 (266)
T PF04821_consen 81 Q--------PKDKNQRRNIPELLKYL------QSYKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIR 145 (266)
T ss_pred C--------CCChHHHHHHHHHHHHH------HHHHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHH
Confidence 0 01233333334444444 344666654 56777666655321 002346677788888
Q ss_pred HHccc
Q 014817 268 ALCLV 272 (418)
Q Consensus 268 ~L~~~ 272 (418)
|+..-
T Consensus 146 NlL~I 150 (266)
T PF04821_consen 146 NLLAI 150 (266)
T ss_pred HHhcC
Confidence 88543
No 407
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.97 E-value=1e+02 Score=32.70 Aligned_cols=113 Identities=11% Similarity=-0.070 Sum_probs=72.7
Q ss_pred hhhHHHHHHHhhcCC------CChhhhHHHHHHHHHHcc--cc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHH
Q 014817 239 DEIFEGVIDILKNLS------SYPRGLKVGIKALFALCL--VK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVEL 309 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~------~~~~~~~~a~~aL~~L~~--~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~ 309 (418)
.|.++.++..|.... .++...+-|++.+.++.. .. .-..-+.+.=.++.++..+++...-++..++..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 689999999994211 134556667777777765 22 223334455577777777888778889999999988
Q ss_pred HhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 310 LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 310 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
+.. +-+..-.- -.+.....+++.+.+..++-.|+-||.-+-.
T Consensus 487 ~ee--Dfkd~~il-l~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 487 IEE--DFKDNGIL-LEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred HHH--hcccchHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 842 21111111 1234566677777777788888888777655
No 408
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=50.75 E-value=18 Score=36.24 Aligned_cols=170 Identities=15% Similarity=0.084 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHH--HHH
Q 014817 214 NSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETL--VDR 291 (418)
Q Consensus 214 ~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~L--v~l 291 (418)
.-+..+..- ..++.++..++....+|..+..+..++ ..+.+.++.++..++....-..+.+....+.+- +.-
T Consensus 224 ~~~~~fv~k---~e~e~n~~~iGk~~~~I~~~~~~ieS~---~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~ 297 (763)
T KOG4231|consen 224 LLASTFVKK---MEDEGNRSVIGKDENAIRQLISMIESD---QHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLK 297 (763)
T ss_pred hHHHHHHHH---hhCcccceeecccchhhhhhccccccc---chhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 344556666 688899999987666677776666553 334444444444333222111111111111000 011
Q ss_pred hcCCCcccHHHHHHHHHHHhc--CHhHHHHHHhccCChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcCh
Q 014817 292 LADFDKCDAERALATVELLCR--IPAGCAEFAEHALTVPLLVKTI-LKISDRATEYAAGALAALCSASERCQRDAVSAGV 368 (418)
Q Consensus 292 L~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~~g~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~ 368 (418)
|.+++ ....+..+..++. ....++.... .+..+++.+ -..+++++++|..++.+++...+..+..+-+...
T Consensus 298 l~~~~---I~~l~~~v~~~~~~s~s~~Qe~~~K---~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l 371 (763)
T KOG4231|consen 298 LSSPD---IISLLQVVVTLAFVSDSVSQEMLTK---DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSL 371 (763)
T ss_pred hcccc---HhhHHHHHhcCCchhhhHHhhhhHH---HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHH
Confidence 11111 1111112221221 1111222211 122333333 2379999999999999988743322222223334
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 369 LTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 369 i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
-..+++++-.+ -++.-+.|+.++..+-
T Consensus 372 ~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 372 RELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 44555666444 4555555555554443
No 409
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.16 E-value=18 Score=31.16 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC-CcccHHHHHHHHHHHHh
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT-LIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~-l~~n~~L~~~i~~~~~~ 83 (418)
+..|.||-|+.- .||.- + .+ ..+.||.|+..+...+ -.....|++.|....+.
T Consensus 115 ~~~Y~Cp~C~~r----------ytf~e-A----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIR----------FTFDE-A----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcE----------EeHHH-H----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 356788887642 23432 2 23 3688999999986433 22234566666666554
No 410
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.09 E-value=11 Score=35.89 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccC
Q 014817 123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDA 194 (418)
Q Consensus 123 ~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 194 (418)
+-.+.+..+|...+.+.+.+++.||++.+++=-.-++ ++|-+++....++++|..++.+|++.|.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD-----~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDD-----WNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCC-----CChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 3567888899999999999999999998775443333 388999999999999998888888888654
No 411
>PLN02400 cellulose synthase
Probab=49.95 E-value=8.7 Score=42.11 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=35.1
Q ss_pred cCcCccccc-----cCCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELM-----CDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~-----~dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.||++-. -+|-+- .||.-.||.|.|-=.++|+..||+|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 899999853 345544 699999999996545678899999997764
No 412
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.36 E-value=43 Score=36.04 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHhcCCCChhH-----------------------------------HHhhcccCCchHHHHHHhcCC---
Q 014817 166 SPELAHESLALLVMFPLTETE-----------------------------------CMEIASDADKITSLSSLLFHS--- 207 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~-----------------------------------~~~~i~~~g~i~~Lv~~L~~~--- 207 (418)
+++++..|+.+|.|+....++ ....+...++|..|+++|+-.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 789999999999888654411 133455678899999999754
Q ss_pred --CHHHHHHHHHHHHHHHhcccchhhhhHhh
Q 014817 208 --SIEVRVNSAALIEIVLAGMRSQELRAQIS 236 (418)
Q Consensus 208 --~~~~~~~a~~~L~~L~~~s~~~~~~~~i~ 236 (418)
...+|..|+.+|..| +.++..++.+.
T Consensus 755 t~aD~IRalAc~~L~GL---aR~~tVrQIlt 782 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGL---ARDDTVRQILT 782 (1516)
T ss_pred CcHHHHHHHHHHHHhcc---ccCcHHHHHHH
Confidence 368899999999999 89999988875
No 413
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=48.16 E-value=2.1e+02 Score=30.10 Aligned_cols=184 Identities=8% Similarity=0.002 Sum_probs=109.4
Q ss_pred hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817 144 SHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVL 223 (418)
Q Consensus 144 ~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~ 223 (418)
+.+++|.|+++++..+ ..++-.-+. .+-..-+.....+.+.-+++.+..-+.+.++-+|+.++..+..|+
T Consensus 328 q~~i~p~l~kLF~~~D-------r~iR~~LL~---~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPD-------RQIRLLLLQ---YIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred ccchhhhHHHHhcCcc-------hHHHHHHHH---hHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 4568999999998873 555543333 221111133445567778999999999999999999999999995
Q ss_pred hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc-hHHHHHHhcCCCcccHHH
Q 014817 224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA-AETLVDRLADFDKCDAER 302 (418)
Q Consensus 224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~-v~~Lv~lL~~~~~~~~~~ 302 (418)
+.-. +..+. ...+..|.++-.+. +...+.+..-+|..++....... +.++ +-+..+-+.++-...+..
T Consensus 398 --~kL~--~~~Ln--~Ellr~~ar~q~d~--~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a 466 (690)
T KOG1243|consen 398 --PKLS--KRNLN--GELLRYLARLQPDE--HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKA 466 (690)
T ss_pred --hhhc--hhhhc--HHHHHHHHhhCccc--cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhh
Confidence 2222 22342 23556665555533 67788888778887776643221 3332 223444455544455555
Q ss_pred HHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 303 ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 303 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
++.++......-+..... ...+|.++.+....+..++..|-.++..
T Consensus 467 ~v~~l~at~~~~~~~~va---~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 467 GVLALAATQEYFDQSEVA---NKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hhHHHhhcccccchhhhh---hhccccccccccCcccchhhHHHHHHHH
Confidence 555555444332222211 1456667766666677777777766554
No 414
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=47.85 E-value=16 Score=40.41 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=27.0
Q ss_pred CCCCcccCcCccc--cccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLE--LMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 13 ~~~~~~~Cpi~~~--~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
++|++++||-|+. .+.|+-+= +| |+ .....||.|+.++..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~svg-sG--fD---------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDGSVG-SG--FD---------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCCCcC-CC--CC---------CCCCCCCcCCCcccc
Confidence 6799999999974 33333222 23 43 256889999999853
No 415
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=47.65 E-value=11 Score=30.63 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=31.2
Q ss_pred cccCcCccccccC--Cee-cCCC------CcccHHHHHHHHHcCCCCCCCCCC
Q 014817 17 HFRCPISLELMCD--PVT-VCTG------QTYDRPSIESWVATGNTTCPVTRS 60 (418)
Q Consensus 17 ~~~Cpi~~~~~~d--Pv~-~~~g------~~~~r~~i~~~~~~~~~~cp~~~~ 60 (418)
..-|.||.+-.-+ =|+ +.|| |.||..|+++|... ....|.-+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccc
Confidence 3469999999888 443 3565 57999999999643 566776543
No 416
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=47.45 E-value=10 Score=31.56 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 014817 52 NTTCPVTRSPLTD 64 (418)
Q Consensus 52 ~~~cp~~~~~l~~ 64 (418)
...||.|+..+..
T Consensus 123 ~f~Cp~Cg~~l~~ 135 (147)
T smart00531 123 TFTCPRCGEELEE 135 (147)
T ss_pred cEECCCCCCEEEE
Confidence 4779999988743
No 417
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.87 E-value=11 Score=22.74 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 014817 52 NTTCPVTRSP 61 (418)
Q Consensus 52 ~~~cp~~~~~ 61 (418)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3578988764
No 418
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.89 E-value=11 Score=37.26 Aligned_cols=65 Identities=23% Similarity=0.456 Sum_probs=45.0
Q ss_pred CCCCcccCcCc-cccccCCeec--CCCCcccHHHHHHHHHcC-CCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817 13 QIPYHFRCPIS-LELMCDPVTV--CTGQTYDRPSIESWVATG-NTTCPVTRSPLTDFTLIPNHTLRRLIQD 79 (418)
Q Consensus 13 ~~~~~~~Cpi~-~~~~~dPv~~--~~g~~~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n~~L~~~i~~ 79 (418)
..++++.||+| .+.|.|-.++ .|..+||..||.+.+... ...|..|.. ....+.++..++..+..
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~ 283 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINR 283 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHH
Confidence 67888999999 9999999998 489999999999987642 233444432 23344555555554433
No 419
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=45.76 E-value=2.5e+02 Score=25.92 Aligned_cols=215 Identities=19% Similarity=0.163 Sum_probs=125.1
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH
Q 014817 107 LLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE 186 (418)
Q Consensus 107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 186 (418)
|=..|.+. +...|.+|+..|......-+... ....-+..|++++.+.-. +......++.+|..|.... .
T Consensus 4 Lg~~Ltse--d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~-----D~~~~~~~l~gl~~L~~~~-~ 72 (262)
T PF14500_consen 4 LGEYLTSE--DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD-----DHACVQPALKGLLALVKMK-N 72 (262)
T ss_pred hhhhhCCC--CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc-----cHhhHHHHHHHHHHHHhCc-C
Confidence 33455554 44457889999988776544322 222336677777654321 3444444455555443222 1
Q ss_pred HHhhcccCCchHHHHHHh-c-----CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 187 CMEIASDADKITSLSSLL-F-----HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 187 ~~~~i~~~g~i~~Lv~~L-~-----~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
...+....+++.+ + +-....|.....+|..|. ....+.-..++ .+.+..+++.++... ||+-..
T Consensus 73 -----~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~--~~~~~~l~~~~--~~fv~~~i~~~~gEk-DPRnLl 142 (262)
T PF14500_consen 73 -----FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLL--ENHREALQSMG--DDFVYGFIQLIDGEK-DPRNLL 142 (262)
T ss_pred -----CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH--HHhHHHHHhch--hHHHHHHHHHhccCC-CHHHHH
Confidence 1111122222222 2 224677888888898885 33333334443 458999999998776 899999
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcC----------CCc-c-cHHHHHHHHH-HHhcCHhHHHHHHhccCCh
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD----------FDK-C-DAERALATVE-LLCRIPAGCAEFAEHALTV 327 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~----------~~~-~-~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i 327 (418)
.+...+..+...-+. ....+-+.+.+.. +++ . ..+.-...|. .|+.++.- .. -++
T Consensus 143 ~~F~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f----a~--~~~ 210 (262)
T PF14500_consen 143 LSFKLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF----AP--FAF 210 (262)
T ss_pred HHHHHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh----HH--HHH
Confidence 999888888655442 2334445555431 122 2 3344444443 34433332 22 468
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 328 PLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 328 ~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
|.|++.|.+++..++.-++.+|...+.
T Consensus 211 p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 211 PLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999999988555
No 420
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.59 E-value=19 Score=33.48 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=31.5
Q ss_pred CcccCcCcccc--------------ccCCe-----ecCCCCcccHHHHHHHHHc----C----CCCCCCCCCCCC
Q 014817 16 YHFRCPISLEL--------------MCDPV-----TVCTGQTYDRPSIESWVAT----G----NTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~--------------~~dPv-----~~~~g~~~~r~~i~~~~~~----~----~~~cp~~~~~l~ 63 (418)
.+-.||+|+.+ +-|+- -.||||....+...-|-.- | +..||+|...+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 35679999864 12222 3489999888777777542 1 245999987764
No 421
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.42 E-value=11 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=28.1
Q ss_pred CCCcccCcCccccccCCe----ecCCCCcccHHHHHHH
Q 014817 14 IPYHFRCPISLELMCDPV----TVCTGQTYDRPSIESW 47 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~ 47 (418)
-..+|+||+...+|.+-- +-.+|..||..+|++.
T Consensus 98 s~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 98 SEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CCCcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 356789999999998875 2358999999999985
No 422
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.28 E-value=3e+02 Score=26.82 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH-HhhcCCCChhhhHHHHHHHHHHccccc-------------
Q 014817 209 IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID-ILKNLSSYPRGLKVGIKALFALCLVKQ------------- 274 (418)
Q Consensus 209 ~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L~~~~~------------- 274 (418)
..-|..|+..|+.|+ ...+..-..+. .+.+..++. .-.++..+...+..|+..+..|+....
T Consensus 225 ~TrR~AA~dfl~~L~--~~~~~~v~~i~--~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLC--KKFEKQVTSIL--MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHH--HHHhHHHHHHH--HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 455678888999994 21111111111 122332222 112332367888899999999986543
Q ss_pred cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817 275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L 349 (418)
+...+...-++|-|- -=.+..+-++..|++.+...-.. -.++.+. +.++.++..|.+++..+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 233444444444443 00122344667777777655532 2233333 4689999999999999998888764
No 423
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=44.98 E-value=4.2e+02 Score=28.41 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccC-CChhHHHHHHHHHhcCCC--ChhHHHhhcccCCchH
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTA-SSPELAHESLALLVMFPL--TETECMEIASDADKIT 198 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~ 198 (418)
..|+..+-...+.. .+..+ .|+++.+++.|......+.. .++.-.+.|+..++++.. +...--..+.+.=.++
T Consensus 388 laal~fl~~~~sKr--ke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 388 LAALFFLIISKSKR--KEETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHHhccc--chhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 45555555554332 12212 58999999999543321111 245555667776665432 1111122222333455
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHH
Q 014817 199 SLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK 278 (418)
Q Consensus 199 ~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~ 278 (418)
.+...+++...-.+..|+..+..+ + .+.+..-.. ..+.+.....+++. +-.++..|+-||.-+-.+++....
T Consensus 464 hv~P~f~s~ygfL~Srace~is~~---e--eDfkd~~il-l~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACEFISTI---E--EDFKDNGIL-LEAYENTHNCLKNN--HLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HhhHhhcCcccchHHHHHHHHHHH---H--HhcccchHH-HHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhchhhhHH
Confidence 556666777777788888888877 2 233332222 34677788888886 788888888999888777754444
Q ss_pred H
Q 014817 279 A 279 (418)
Q Consensus 279 i 279 (418)
+
T Consensus 536 ~ 536 (970)
T COG5656 536 F 536 (970)
T ss_pred H
Confidence 3
No 424
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=44.21 E-value=7.7 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=5.7
Q ss_pred ccCcCccccccC
Q 014817 18 FRCPISLELMCD 29 (418)
Q Consensus 18 ~~Cpi~~~~~~d 29 (418)
|.||+|+..+.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666665544
No 425
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.04 E-value=25 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817 211 VRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK 250 (418)
Q Consensus 211 ~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~ 250 (418)
+|..|+++|..+ .. ..++++|++.|+
T Consensus 1 VR~~Aa~aLg~i---gd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI---GD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG----S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc---CC-----------HHHHHHHHHHhc
Confidence 466777777777 21 346788887775
No 426
>PRK01343 zinc-binding protein; Provisional
Probab=43.78 E-value=19 Score=24.54 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=17.0
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHc
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT 50 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~ 50 (418)
...||+|+..+..+..-=|....-.-=+.+|+.+
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e 42 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSG 42 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCC
Confidence 4569999887654432112222222234556654
No 427
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=20 Score=32.86 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=26.4
Q ss_pred cccCcCccccccCCeecCC----CCcccHHHHHHHHH
Q 014817 17 HFRCPISLELMCDPVTVCT----GQTYDRPSIESWVA 49 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~----g~~~~r~~i~~~~~ 49 (418)
.++|.+|.+=+.|-.-+.| +|.||--|=.+.++
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 4899999999999886644 79999777666654
No 428
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.65 E-value=2.7e+02 Score=25.93 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=48.6
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHH--HHHHcCchHHHHHHhc------------CCCcccHHHHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRY--KAVAAGAAETLVDRLA------------DFDKCDAERALAT 306 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~--~i~~~G~v~~Lv~lL~------------~~~~~~~~~a~~~ 306 (418)
++|+++.++++. ++..+..++.+|..+..+-.... .+.+.|..+.+-+.|. .....+...+..+
T Consensus 120 iiP~iL~llDD~--~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 120 IIPPILNLLDDY--SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHhhHHHHhcCC--CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 799999999998 89999999999999987544322 3556776665555443 1223455667777
Q ss_pred HHHHh
Q 014817 307 VELLC 311 (418)
Q Consensus 307 L~~L~ 311 (418)
|..|+
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 77764
No 429
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=42.65 E-value=7.1 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=14.6
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817 34 CTGQTYDRPSIESWVATGNTTCPVTRS 60 (418)
Q Consensus 34 ~~g~~~~r~~i~~~~~~~~~~cp~~~~ 60 (418)
.|||+|+... ...+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 5777777432 111123567999987
No 430
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=42.20 E-value=19 Score=31.52 Aligned_cols=43 Identities=16% Similarity=0.393 Sum_probs=34.8
Q ss_pred cCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
.|-+|..+.-.=+.- +||-.|-+.|+++++.+ ...||.|+--.
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 799999987666655 58888899999999987 78899996443
No 431
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.81 E-value=21 Score=27.97 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCC
Q 014817 53 TTCPVTRSPLTDF 65 (418)
Q Consensus 53 ~~cp~~~~~l~~~ 65 (418)
-+||.|+..+...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3477776655433
No 432
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.36 E-value=17 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCcccCcCccccccC-CeecCCCCcccHHHHHHHHHc
Q 014817 15 PYHFRCPISLELMCD-PVTVCTGQTYDRPSIESWVAT 50 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~~ 50 (418)
..+..|.||.+...+ .+.+.|||.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345789999998886 666689999999999999864
No 433
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.78 E-value=1.9e+02 Score=23.22 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=63.0
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc-----------hhhhhHhhc-hhhhHHHHHHHhhcCCCC--hhhhH
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS-----------QELRAQISN-LDEIFEGVIDILKNLSSY--PRGLK 260 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~-----------~~~~~~i~~-~~g~i~~Lv~lL~~~~~~--~~~~~ 260 (418)
+.++.++..+++ ++........+|..+.....+ .+.+..+.. ...+++.+.+++...... .+...
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 456666666655 344455555555555210000 011111211 134566666666655211 67788
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
.++.++..... --....+...+.++.+.++|.. +.+.+.|+.+|
T Consensus 105 ~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWIS-WIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 89999988877 3344566677899999999954 56677887765
No 434
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.73 E-value=37 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.4
Q ss_pred CcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 37 QTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 37 ~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|||..|.+..+ ...||-|+..|.
T Consensus 29 CTFC~~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETML---NGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHh---cCcCcCCCCccc
Confidence 499999998876 367999987764
No 435
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.17 E-value=20 Score=28.81 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.7
Q ss_pred CcccCcCccccc
Q 014817 16 YHFRCPISLELM 27 (418)
Q Consensus 16 ~~~~Cpi~~~~~ 27 (418)
....||-|+.=|
T Consensus 8 tKr~Cp~cg~kF 19 (129)
T TIGR02300 8 TKRICPNTGSKF 19 (129)
T ss_pred ccccCCCcCccc
Confidence 345677666543
No 436
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.80 E-value=1.4e+02 Score=23.91 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=29.9
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHHHHHhc
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCR--IPAGCAEFAEH 323 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~ 323 (418)
++..|..-|.+.++.++.+++.+|..|+. +++.+..+...
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 45667778887778888999999999994 44555555554
No 437
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.68 E-value=85 Score=31.59 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhC-CCHHHHHHHHHHHHHH
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSD-CTDRAKRKAQLLLKLL 395 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l 395 (418)
++..|.+.+.+.++.++..|+.+|-.+.+. ...+..++.+.+++.-++.+.... .+..+|+++..+|.-=
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 355666777777789999999977776662 345667888999999998888765 5788898877766543
No 438
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.45 E-value=2.5e+02 Score=24.27 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=66.7
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc----cC---------------CchHHHHHHhcCC
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS----DA---------------DKITSLSSLLFHS 207 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~---------------g~i~~Lv~~L~~~ 207 (418)
.-+.|+.++-.+. ++.++..|+.+|..|-.+....-.... .. ..-..|+..|+..
T Consensus 40 ~~~sLlt~il~Dp------~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E 113 (182)
T PF13251_consen 40 ATPSLLTCILKDP------SPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE 113 (182)
T ss_pred CCcchhHHHHcCC------chhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556666665443 688999999988866544311100000 01 1123344555444
Q ss_pred -CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817 208 -SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 208 -~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
+..+.....+.|..|+ ...+-.|-..+--..++..+-.++.+. |+.++..++.++..|.....
T Consensus 114 ~~~~~l~q~lK~la~Lv--~~tPY~rL~~~ll~~~v~~v~~~l~~~--d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 114 KSPPVLTQLLKCLAVLV--QATPYHRLPPGLLTEVVTQVRPLLRHR--DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cccHHHHHHHHHHHHHH--ccCChhhcCHhHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCC
Confidence 5667777888888885 222222222211123455555566676 88899999999888876543
No 439
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.35 E-value=24 Score=29.78 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 014817 52 NTTCPVTRSPLTDFT 66 (418)
Q Consensus 52 ~~~cp~~~~~l~~~~ 66 (418)
.+.||.|+..+...+
T Consensus 128 ~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 128 NFTCPRCGAMLDYLD 142 (158)
T ss_pred CCcCCCCCCEeeecc
Confidence 688999999875433
No 440
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.33 E-value=1.1e+02 Score=29.18 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHccccccHHHHHHcC--chHHHHHHhcCCC---cccHHHHHHHHHHHhcCHhHHHHHHh-------ccC
Q 014817 258 GLKVGIKALFALCLVKQTRYKAVAAG--AAETLVDRLADFD---KCDAERALATVELLCRIPAGCAEFAE-------HAL 325 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i~~~G--~v~~Lv~lL~~~~---~~~~~~a~~~L~~L~~~~~~~~~i~~-------~~g 325 (418)
++-.|+..|..+.........+...+ .+..|++++..++ ..++..|+.+|..|+....-...+.. | |
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H-G 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH-G 316 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc-c
Confidence 44445555555555666778888777 9999999998543 46778899999999864432222222 3 6
Q ss_pred ChHHHHHHH
Q 014817 326 TVPLLVKTI 334 (418)
Q Consensus 326 ~i~~Lv~~l 334 (418)
.++.+++.+
T Consensus 317 iL~~llR~~ 325 (329)
T PF06012_consen 317 ILPQLLRKC 325 (329)
T ss_pred cHHHHHHHH
Confidence 666666543
No 441
>PLN03086 PRLI-interacting factor K; Provisional
Probab=39.29 E-value=39 Score=34.78 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=26.5
Q ss_pred CCCCcccCcCcccccc------------CCeecCCCCcccHHHHHHHHHcC----CCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMC------------DPVTVCTGQTYDRPSIESWVATG----NTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~------------dPv~~~~g~~~~r~~i~~~~~~~----~~~cp~~~~~l~ 63 (418)
+++..+.|+.|++.|. .|+.-+||..+.|..+.++.... ...|+.|+..+.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 4455566777766542 23333466666666665554321 223666665553
No 442
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=39.10 E-value=22 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.8
Q ss_pred CCCCCCCCCCC
Q 014817 52 NTTCPVTRSPL 62 (418)
Q Consensus 52 ~~~cp~~~~~l 62 (418)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 45699998743
No 443
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=38.81 E-value=26 Score=35.06 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
+..+.+.+..+. +++.+..|..++.+++.+.+||...+- ...-..+++++..+.+++-+.+..+|..+..+
T Consensus 329 ~~~~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 329 MLKALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHHHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 334444444443 899999999999999999998876653 34455677777777777777777777776653
No 444
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=38.72 E-value=1.2e+02 Score=25.36 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=15.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
-|.+|+.+|.+.+..+...|+.+|.+
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 36677777766677777777777666
No 445
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.25 E-value=16 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHc------------CCCCCCCCCCCCCCC
Q 014817 38 TYDRPSIESWVAT------------GNTTCPVTRSPLTDF 65 (418)
Q Consensus 38 ~~~r~~i~~~~~~------------~~~~cp~~~~~l~~~ 65 (418)
..||+|+.+|+.. |..+||.|++++.-.
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 4568999999852 456799999987643
No 446
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.11 E-value=4.4e+02 Score=26.67 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
+..++.-|+..|.+.+...++-.... ..-.+..++.-|-+ .+.++...+...|..+.....+++....+ ..+.-.
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~---l~ialr 346 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL---LNIALR 346 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc---hhHHHH
Confidence 56788889999999887632222211 12234445554443 45788888888777773212222221111 123345
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHccccc--cHHHHHH--cCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVKQ--TRYKAVA--AGAAETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
+..+.++. +++.+.+|..+...|+.... -+.-+.+ .+...+++-.|.++++.+ ..|+......+
T Consensus 347 lR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c 414 (533)
T KOG2032|consen 347 LRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTC 414 (533)
T ss_pred HHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhc
Confidence 66677777 88999999998888875433 3333343 233334444555544433 34444444433
No 447
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.53 E-value=73 Score=28.23 Aligned_cols=61 Identities=15% Similarity=0.366 Sum_probs=41.4
Q ss_pred cCcCccccc--cCCeecCCCCcccHHHHHHHHHc-------CCCCCCCCCCCC-CCCCCc-cc-HHHHHHHHH
Q 014817 19 RCPISLELM--CDPVTVCTGQTYDRPSIESWVAT-------GNTTCPVTRSPL-TDFTLI-PN-HTLRRLIQD 79 (418)
Q Consensus 19 ~Cpi~~~~~--~dPv~~~~g~~~~r~~i~~~~~~-------~~~~cp~~~~~l-~~~~l~-~n-~~L~~~i~~ 79 (418)
-|.+|+..+ .|-+-+-|=|.|--.|+.+|..+ ....||.|.+++ ++.++. |. .+|++...+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLre~L~q 124 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALREQLKQ 124 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHHHHHHh
Confidence 588888776 46677789999999999999754 134599998664 554442 21 255555444
No 448
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.39 E-value=27 Score=36.69 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHHcC----CCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATG----NTTCPVTRSPLTDFT 66 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~----~~~cp~~~~~l~~~~ 66 (418)
.||-|+.. ++-|..||.+| | ...||.|+..++...
T Consensus 3 ~Cp~Cg~~------n~~~akFC~~C-------G~~l~~~~Cp~CG~~~~~~~ 41 (645)
T PRK14559 3 ICPQCQFE------NPNNNRFCQKC-------GTSLTHKPCPQCGTEVPVDE 41 (645)
T ss_pred cCCCCCCc------CCCCCcccccc-------CCCCCCCcCCCCCCCCCccc
No 449
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=5.7e+02 Score=27.75 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=76.2
Q ss_pred hhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc-HHHHH-HcCchHHHHHHh-------cCCCcccHHHHHHHHH-H
Q 014817 240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT-RYKAV-AAGAAETLVDRL-------ADFDKCDAERALATVE-L 309 (418)
Q Consensus 240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n-~~~i~-~~G~v~~Lv~lL-------~~~~~~~~~~a~~~L~-~ 309 (418)
..+|.+++.|+.+ +..+=..|+.++-.+-...++ ...+- .....|.+..+| ..+...--+-.+.++. .
T Consensus 498 ~~~p~li~~L~a~--s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRi 575 (960)
T KOG1992|consen 498 ALLPRLIRFLEAE--SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRI 575 (960)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHH
Confidence 3789999999988 677777888888877644333 33332 333333222222 1222211223333333 3
Q ss_pred HhcCHhHHHHHHhccCChHHHHHHHh----c-CChHHH---HHHHHHHHHH-hcCCHHHHHHHHhcChHHHHHHHHhhCC
Q 014817 310 LCRIPAGCAEFAEHALTVPLLVKTIL----K-ISDRAT---EYAAGALAAL-CSASERCQRDAVSAGVLTQLLLLVQSDC 380 (418)
Q Consensus 310 L~~~~~~~~~i~~~~g~i~~Lv~~l~----~-~~~~~~---~~A~~~L~~l-~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 380 (418)
+...++....... -.+..|.+++. + .++... -.+++++.+. |..++... .-.+...++.+..+++.+
T Consensus 576 i~i~~~~i~p~~~--~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eD- 651 (960)
T KOG1992|consen 576 ISILQSAIIPHAP--ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSED- 651 (960)
T ss_pred HHhCHHhhhhhhh--HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHH-
Confidence 3333332211111 12333444332 2 233222 2344444443 44444333 345566777777777544
Q ss_pred CHHHHHHHHHHHHHHHhhCC
Q 014817 381 TDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 381 ~~~~~~~A~~~L~~l~~~~~ 400 (418)
-.+.--.+..+|..+.++..
T Consensus 652 I~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 652 IQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34444456667777777654
No 450
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=37.17 E-value=25 Score=27.43 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=15.5
Q ss_pred CCeec---CCCCcccHHHHHHHHH
Q 014817 29 DPVTV---CTGQTYDRPSIESWVA 49 (418)
Q Consensus 29 dPv~~---~~g~~~~r~~i~~~~~ 49 (418)
.||-+ .|+ |.||.||++|=.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 57755 466 899999999954
No 451
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=36.48 E-value=55 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCC-cccHHHHHHHHHHHHh
Q 014817 52 NTTCPVTRSPLTDFTL-IPNHTLRRLIQDWCVA 83 (418)
Q Consensus 52 ~~~cp~~~~~l~~~~l-~~n~~L~~~i~~~~~~ 83 (418)
.++||.|+..+...+- .-...+.+.++.....
T Consensus 132 ~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 132 GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 4889999998864432 2233455555554443
No 452
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.47 E-value=5e+02 Score=27.65 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
..+.-+-.++..|..+....+.....+.+...+..|+..|+.+.+..+--.|..+|-+|-.
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 3456678888888888888888899999999999999999888677887788777776655
No 453
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.43 E-value=2.8e+02 Score=23.97 Aligned_cols=109 Identities=25% Similarity=0.248 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHh-------------hchh-----hhHHHHHHHhhcCCCChhhh
Q 014817 198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI-------------SNLD-----EIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i-------------~~~~-----g~i~~Lv~lL~~~~~~~~~~ 259 (418)
..+.-++.+.++.+|..|+.+|..|..++ ..+-... .... ..=..|+..|+.+. +..+.
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l 119 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVL 119 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHH
Confidence 33344556677888888888888775322 1110000 0001 11234666666664 77888
Q ss_pred HHHHHHHHHHccccc-cHHHHHHcCchHHHH----HHhcCCCcccHHHHHHHHHHHhc
Q 014817 260 KVGIKALFALCLVKQ-TRYKAVAAGAAETLV----DRLADFDKCDAERALATVELLCR 312 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv----~lL~~~~~~~~~~a~~~L~~L~~ 312 (418)
...+++|..|..+.. +|- ..|.++.++ .++.+.|..++..++.++..|..
T Consensus 120 ~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 899999999987755 222 235555544 45567888999999888887765
No 454
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.39 E-value=18 Score=26.96 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=11.0
Q ss_pred ccHHHHHHHHHc
Q 014817 39 YDRPSIESWVAT 50 (418)
Q Consensus 39 ~~r~~i~~~~~~ 50 (418)
|||.|+.+|...
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 455
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=35.55 E-value=4.5e+02 Score=26.03 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHhhcccCCchHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC--------CCh
Q 014817 186 ECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS--------SYP 256 (418)
Q Consensus 186 ~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~ 256 (418)
+.|..+. ..+..+|..+- ...+.....+++-| +.+.+.-+.+.. ...+..|+.+.+-.. .+.
T Consensus 41 d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrIL---SRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~ 111 (532)
T KOG4464|consen 41 DDRKELG-----ERIFEVLENGEPLTHRVVCLETVRIL---SRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADM 111 (532)
T ss_pred hhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHH---hccccccccccc-hHHHHHHHHHHHhccccCCCCcccch
Confidence 4466553 56778887775 55567788899999 777776666544 335666666654210 033
Q ss_pred hhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCC-----CcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHH
Q 014817 257 RGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADF-----DKCDAERALATVELLC-RIPAGCAEFAEHALTVPL 329 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~ 329 (418)
.+...++.+|.|+..+.. .+....+...+..+++.+... ...+.---+.+|..|. -....|.++....+|++.
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 678889999999997765 667777887777777766421 1233444555555554 245778877777799999
Q ss_pred HHHHHhc
Q 014817 330 LVKTILK 336 (418)
Q Consensus 330 Lv~~l~~ 336 (418)
+.+++..
T Consensus 192 lt~~led 198 (532)
T KOG4464|consen 192 LTNWLED 198 (532)
T ss_pred HHHHhhc
Confidence 9999865
No 456
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=35.27 E-value=4e+02 Score=25.33 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=139.4
Q ss_pred HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh----HHHhhcc-cCCchHHHHHHhcCCCHHHHHHHH
Q 014817 142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET----ECMEIAS-DADKITSLSSLLFHSSIEVRVNSA 216 (418)
Q Consensus 142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~----~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~ 216 (418)
+..+|....|+..|..- +-+.+..++.+..++-.-+- .....+. ....+..|++-=.. .+++...+-
T Consensus 75 f~~~~~l~~lI~~l~~l-------~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg 146 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKL-------EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCG 146 (342)
T ss_pred HHhCCchHHHHHhhhcc-------cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHH
Confidence 55678888888888665 35666667666555432221 1222332 33445555544111 466666666
Q ss_pred HHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCc----hHHHHHH
Q 014817 217 ALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGA----AETLVDR 291 (418)
Q Consensus 217 ~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~----v~~Lv~l 291 (418)
..|+.. ..++...+.|-. ..-........+.+ +=++...|..+...+-..+ .....+....- .+.--.+
T Consensus 147 ~mlrEc---irhe~LakiiL~-s~~~~~FF~~vq~p--~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~L 220 (342)
T KOG1566|consen 147 NMLREC---IRHEFLAKIILE-STNFEKFFLYVQLP--NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKL 220 (342)
T ss_pred HHHHHH---HhhHHHHHHHHc-chhHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHH
Confidence 777777 677777776655 44678888888887 6688888888888887554 34455554433 2334456
Q ss_pred hcCCCcccHHHHHHHHHHHhcCHhHHHHHHh---ccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHHhc
Q 014817 292 LADFDKCDAERALATVELLCRIPAGCAEFAE---HALTVPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAVSA 366 (418)
Q Consensus 292 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~~~ 366 (418)
+.+++--.+..++.+|..+-.+..+...+.. ....+..++.+|+..+...|-.|-.+-+-..+ +.++-...+.-.
T Consensus 221 l~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~ 300 (342)
T KOG1566|consen 221 LRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVR 300 (342)
T ss_pred hcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHh
Confidence 6777777888999999888755544443332 23567788888888999999999999888777 222222222222
Q ss_pred ChHHHHHHHHh
Q 014817 367 GVLTQLLLLVQ 377 (418)
Q Consensus 367 g~i~~L~~ll~ 377 (418)
-=++|+.+++
T Consensus 301 -Nr~KLl~~l~ 310 (342)
T KOG1566|consen 301 -NRPKLLELLH 310 (342)
T ss_pred -CcHHHHHHHH
Confidence 2256666664
No 457
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=35.08 E-value=3.1e+02 Score=27.84 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=55.8
Q ss_pred HHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhc---C----------CHHHHHHHHhcChHHHHHHHHhh-CCCH
Q 014817 318 AEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCS---A----------SERCQRDAVSAGVLTQLLLLVQS-DCTD 382 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~---~----------~~~~~~~~~~~g~i~~L~~ll~~-~~~~ 382 (418)
+.+.+ .+.|+.|+..|.. .+...+.+|+..|..|.. . ..+....+.....+..|+..+-. .+..
T Consensus 56 ewL~~-q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 56 EWLAE-QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHH-hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 33444 4999999999975 677789999888777654 1 13455667788899999988863 3355
Q ss_pred HHHHHHHHHHHHHHhh
Q 014817 383 RAKRKAQLLLKLLRDS 398 (418)
Q Consensus 383 ~~~~~A~~~L~~l~~~ 398 (418)
.+.-...-++..++++
T Consensus 135 ~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 135 SLVNGVSILIELIRKN 150 (475)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 5555566667777554
No 458
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.94 E-value=82 Score=27.70 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=45.7
Q ss_pred hhhhHHhhcChHHHHHHHhhcccccc-----------cCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc
Q 014817 137 KNRSLISSHNVRAILSQVFFTNINVK-----------TASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF 205 (418)
Q Consensus 137 ~~~~~i~~~g~i~~Lv~lL~~~~~~~-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~ 205 (418)
.+...+...|++..++++|..+.... ...-.++...+...|..++.++.+|+..+.+. ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45566888999999999997653211 00013455666777777777776777776543 222223222
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817 206 HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 206 ~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~ 273 (418)
......-..+..+|..+. ..+.+....+.+ ..|..++.++... . -...-+..|..|+..+
T Consensus 112 ~~~~~~~~~~~d~l~~i~--~dN~~L~~~i~e--~~I~~~i~ll~~~--g--r~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIF--RDNPELCESISE--EHIEKFIELLRKH--G--RQPRYLDFLSSLCVCN 171 (207)
T ss_dssp CCCH-TTHHHHHHHHHHH--TT----------------------------------------------
T ss_pred HhhccCCchHHHHHHHHH--HCcHHHHHHhhH--HHHHHHHHHHHHc--C--CChHHHHHHhhhcccC
Confidence 211111123455566664 455555555543 2477777777763 1 1122445555555443
No 459
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=34.37 E-value=3.1e+02 Score=23.78 Aligned_cols=114 Identities=16% Similarity=0.057 Sum_probs=62.0
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHH
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH-ALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRD 362 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 362 (418)
.+|.+++=|.+.+....--|..-...|... .+.+++.-. ...|.++-..|.+.++.+...++.+|..|+..++..-..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344445544444444343444444444333 222222211 245666666677789999999999999997644433333
Q ss_pred HHhcChHHHHHHHHh----hC----------CCHHHHHHHHHHHHHHHhhCC
Q 014817 363 AVSAGVLTQLLLLVQ----SD----------CTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 363 ~~~~g~i~~L~~ll~----~~----------~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++-. ...|+-.+. .. .....++....+|+.|.++..
T Consensus 118 LvPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 118 LVPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 2221 222222222 11 136677888888888887743
No 460
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.37 E-value=71 Score=22.02 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCC
Q 014817 51 GNTTCPVTRSPLTDFT 66 (418)
Q Consensus 51 ~~~~cp~~~~~l~~~~ 66 (418)
.+..||.|+.+++++.
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 4677999988876543
No 461
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.26 E-value=2.1e+02 Score=31.34 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHH----HHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 014817 284 AAETLVDRLADFDKCDAERALATVE----LLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC 359 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~----~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~ 359 (418)
++..-..+|.+.+..++-+++.+|. .|+.+++.---++. ..-+.+++.+...++.+-..|..+|.+++..+...
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh--q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH--QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH--hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 5555667777878888888988886 34455554444443 56899999999999999999999999999966666
Q ss_pred HHHHHhcChHHHHHHHHhh
Q 014817 360 QRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 360 ~~~~~~~g~i~~L~~ll~~ 378 (418)
...=.-..++|.|-.+++.
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555556678887666643
No 462
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=34.24 E-value=2.3e+02 Score=27.12 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCC-CChhhhHHHHHHHHHHccccccHHHHH-------
Q 014817 210 EVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLS-SYPRGLKVGIKALFALCLVKQTRYKAV------- 280 (418)
Q Consensus 210 ~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~-~~~~~~~~a~~aL~~L~~~~~n~~~i~------- 280 (418)
.+|..|...|..+ .........+.. +.+++..|+++++.+. ....++..|+.+|..|+....-...++
T Consensus 237 ~iRllAi~~l~~~---~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v 313 (329)
T PF06012_consen 237 QIRLLAIANLVYI---HPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANV 313 (329)
T ss_pred HHHHHHHHHHHhh---CCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCC
Confidence 5566677777777 555555566543 3459999999998652 245788999999999998655444443
Q ss_pred HcCchHHHHHH
Q 014817 281 AAGAAETLVDR 291 (418)
Q Consensus 281 ~~G~v~~Lv~l 291 (418)
..|.++.+++-
T Consensus 314 ~HGiL~~llR~ 324 (329)
T PF06012_consen 314 SHGILPQLLRK 324 (329)
T ss_pred CcccHHHHHHH
Confidence 34556555543
No 463
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=34.18 E-value=18 Score=20.21 Aligned_cols=9 Identities=22% Similarity=0.925 Sum_probs=5.1
Q ss_pred cCcCccccc
Q 014817 19 RCPISLELM 27 (418)
Q Consensus 19 ~Cpi~~~~~ 27 (418)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 366665544
No 464
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=33.88 E-value=50 Score=27.49 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=20.5
Q ss_pred CCCCcccH-----HHHHHHHHcCCCCCCCCCCCC-CCCCCccc
Q 014817 34 CTGQTYDR-----PSIESWVATGNTTCPVTRSPL-TDFTLIPN 70 (418)
Q Consensus 34 ~~g~~~~r-----~~i~~~~~~~~~~cp~~~~~l-~~~~l~~n 70 (418)
.+||+|+- ...++-...|--+||+|+..- ....+-|+
T Consensus 9 ~~gH~FEgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~ 51 (148)
T PF06676_consen 9 ENGHEFEGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPA 51 (148)
T ss_pred CCCCccceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCe
Confidence 46899963 222222233556799998653 34444554
No 465
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=33.77 E-value=32 Score=32.45 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=46.6
Q ss_pred CcccCcCccccccCCeecCCCCcccHHHHHHHHHc-CCCCCCCCCCCCCCCCCcccH--HHHHHHHHHHHhccCCCc
Q 014817 16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-GNTTCPVTRSPLTDFTLIPNH--TLRRLIQDWCVANRSFGV 89 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~~~~l~~n~--~L~~~i~~~~~~~~~~~~ 89 (418)
+.-.|-||.+-+.=--++||||..|-.|--+.-.. ....||.|+..-...-+...+ .+.+ ...|+.++.-.|+
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI~D-~~~~k~~~EK~GI 135 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADITD-RRQWKGREEKVGI 135 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcchh-Hhhhcccccceee
Confidence 34689999998888888999999999887764331 246799998653211111000 1111 3568887765554
No 466
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.29 E-value=69 Score=25.36 Aligned_cols=40 Identities=23% Similarity=0.119 Sum_probs=33.9
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH 323 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 323 (418)
+++.|+.-|.+.+.++...|+.+|...+..++..+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 6788999999888999999999999999877766666653
No 467
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=33.18 E-value=3.4e+02 Score=30.96 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH-HHccccccHHHHHHcCchHH
Q 014817 209 IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF-ALCLVKQTRYKAVAAGAAET 287 (418)
Q Consensus 209 ~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~-~L~~~~~n~~~i~~~G~v~~ 287 (418)
..+++..+++|..+ -.+.+.. .+ ...++.+..++... .-+.+.-.+..+. +++...+.-. ..-.-+++.
T Consensus 143 apVre~caq~L~~~---l~~~~~s-~~---~~~~~il~q~~~q~--~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~ 212 (1549)
T KOG0392|consen 143 APVREACAQALGAY---LKHMDES-LI---KETLDILLQMLRQP--NWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDF 212 (1549)
T ss_pred hhhHHHHHHHHHHH---HHhhhhH-hh---HHHHHHHHHHHcCc--chhheechHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 47788888888888 3333321 22 23577788888766 4555554444443 3331111111 111235666
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhcCChH-H-HHHHHHHHHHHhcCCHHHHH---
Q 014817 288 LVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH-ALTVPLLVKTILKISDR-A-TEYAAGALAALCSASERCQR--- 361 (418)
Q Consensus 288 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~~~~~-~-~~~A~~~L~~l~~~~~~~~~--- 361 (418)
.++-|.+.+..+...|+..|.-.+..-- ...... +..+..+...+...+.. . ...-...|..+|... +...
T Consensus 213 ~i~~L~ds~ddv~~~aa~~l~~~~s~~v--~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~ 289 (1549)
T KOG0392|consen 213 VIEGLEDSDDDVRSVAAQFLVPAPSIQV--KLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFE 289 (1549)
T ss_pred HHhhhhhcchHHHHHHHHHhhhhhHHHH--hhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHH
Confidence 6777777677777777777665543220 111110 11222333333322221 1 112222334455422 2211
Q ss_pred HH-HhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 362 DA-VSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 362 ~~-~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.. ...|.++.++-++.+. =..+++.+..++..|.....
T Consensus 290 ~~n~~~~Lvp~~~p~l~~~-i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 290 QQNLEVGLVPRLWPFLRHT-ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HhhhhhccchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 11 2258899998888776 78888999999988888754
No 468
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.01 E-value=35 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.580 Sum_probs=23.8
Q ss_pred cCCCCcccHHHHHHHHHc-----C-----CCCCCCCCCCCC
Q 014817 33 VCTGQTYDRPSIESWVAT-----G-----NTTCPVTRSPLT 63 (418)
Q Consensus 33 ~~~g~~~~r~~i~~~~~~-----~-----~~~cp~~~~~l~ 63 (418)
+.||+.|-.-|+.+|+.. . -..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 469999999999999863 1 135999977653
No 469
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.53 E-value=8.4 Score=27.83 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=9.8
Q ss_pred ccCcCccccccCCe
Q 014817 18 FRCPISLELMCDPV 31 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv 31 (418)
+.||+|.--|.--+
T Consensus 2 llCP~C~v~l~~~~ 15 (88)
T COG3809 2 LLCPICGVELVMSV 15 (88)
T ss_pred cccCcCCceeeeee
Confidence 46999988765433
No 470
>COG1773 Rubredoxin [Energy production and conversion]
Probab=32.48 E-value=22 Score=24.01 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.3
Q ss_pred CCCCCcccCcCccc
Q 014817 12 VQIPYHFRCPISLE 25 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~ 25 (418)
.++|++..||.|+-
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 48999999999984
No 471
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=32.39 E-value=37 Score=29.24 Aligned_cols=33 Identities=24% Similarity=0.628 Sum_probs=20.4
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTR 59 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~ 59 (418)
+.||.++.+|-|-+-- --+.+|-+|++. ||.-.
T Consensus 88 YICPFTGKVF~DNt~~-----nPQDAIYDWvSk----CPeN~ 120 (238)
T PF10915_consen 88 YICPFTGKVFGDNTHP-----NPQDAIYDWVSK----CPENT 120 (238)
T ss_pred EEcCCcCccccCCCCC-----ChHHHHHHHHhh----CCccc
Confidence 5777777777765432 226677777765 66543
No 472
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.11 E-value=87 Score=17.62 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc
Q 014817 210 EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN 251 (418)
Q Consensus 210 ~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~ 251 (418)
.+|..|+.+|.++ . ...+++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~---~-----------~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL---G-----------DEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc---C-----------CHhHHHHHHHHhcC
Confidence 3567778888777 2 13356667766654
No 473
>PRK00420 hypothetical protein; Validated
Probab=32.03 E-value=17 Score=28.60 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCC
Q 014817 51 GNTTCPVTRSPLT 63 (418)
Q Consensus 51 ~~~~cp~~~~~l~ 63 (418)
|...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 4556899987654
No 474
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=1.3e+02 Score=33.42 Aligned_cols=80 Identities=25% Similarity=0.105 Sum_probs=63.9
Q ss_pred cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc---CChHHHHHHHHHHHH
Q 014817 275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK---ISDRATEYAAGALAA 351 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~---~~~~~~~~A~~~L~~ 351 (418)
.+.++..+|++..|++.+....+.++-.-+.+|..+++....-+......|++..|++++.- ++.....+|.+++.-
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 57788889999999998887788888899999999997554444444447999999998743 666678888888888
Q ss_pred Hhc
Q 014817 352 LCS 354 (418)
Q Consensus 352 l~~ 354 (418)
+|.
T Consensus 980 Lga 982 (2799)
T KOG1788|consen 980 LGA 982 (2799)
T ss_pred Hhh
Confidence 887
No 475
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.63 E-value=34 Score=37.32 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=29.3
Q ss_pred cccCcCccccccCCeecCCCC-----cccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQ-----TYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+.||-|+....-..--.||. .||..| .+. .+...||.|+.....
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTP 675 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCc
Confidence 458999998863333334884 488888 221 234679999988753
No 476
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=31.58 E-value=38 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHH--cCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA--TGNTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~--~~~~~cp~~~~~l~ 63 (418)
.=+..|.||+|+. +|.---+.+.+. .+.+.|-.|+..+-
T Consensus 124 t~~~~Y~Cp~C~k------------kyt~Lea~~L~~~~~~~F~C~~C~gelv 164 (436)
T KOG2593|consen 124 TNVAGYVCPNCQK------------KYTSLEALQLLDNETGEFHCENCGGELV 164 (436)
T ss_pred cccccccCCcccc------------chhhhHHHHhhcccCceEEEecCCCchh
Confidence 4456788888876 444444444444 24667888887764
No 477
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.17 E-value=4e+02 Score=27.02 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCH--------------hHHHHHHhccCChHHHHHHHhc-CCh
Q 014817 276 RYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRIP--------------AGCAEFAEHALTVPLLVKTILK-ISD 339 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~--------------~~~~~i~~~~g~i~~Lv~~l~~-~~~ 339 (418)
...+.+.+.|+.|+.+|. +.+..++..|..+|..+.... .--..+.. ...|..|+..+.. ...
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCc
Confidence 344557999999999997 335567888888877665321 12233444 3677778888774 335
Q ss_pred HHHHHHHHHHHHHhc
Q 014817 340 RATEYAAGALAALCS 354 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~ 354 (418)
..-.+++.++..|-+
T Consensus 134 s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 134 SSLVNGVSILIELIR 148 (475)
T ss_pred chHHHHHHHHHHHHH
Confidence 566777777777665
No 478
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.08 E-value=5.9e+02 Score=27.70 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=83.9
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHH-H-------HHHhcCC-CHHHHHHHHH
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITS-L-------SSLLFHS-SIEVRVNSAA 217 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~-L-------v~~L~~~-~~~~~~~a~~ 217 (418)
.+|.+++.|.++ ..-|-..|+.++-.+-.-.+.+...+..++-+.+ + .+.++.+ +.+-....=.
T Consensus 499 ~~p~li~~L~a~-------s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 499 LLPRLIRFLEAE-------SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred HHHHHHHhccCc-------chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 588888888876 4667777888777554333233444444433332 1 2222222 1111111222
Q ss_pred HHHHHHhcccchhhhhHhhchhhhHHHHHHHh----hcCCCChhhhHHHHHHHH----HHccccccHHHHHHcCchHHHH
Q 014817 218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDIL----KNLSSYPRGLKVGIKALF----ALCLVKQTRYKAVAAGAAETLV 289 (418)
Q Consensus 218 ~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~aL~----~L~~~~~n~~~i~~~G~v~~Lv 289 (418)
+++.+ ...++.....+. -.+..|.+++ ++.+ +|..-..-..++. ..+..+.....-.+...+|.+-
T Consensus 572 ImRii---~i~~~~i~p~~~--~~l~~Lteiv~~v~KNPs-~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq 645 (960)
T KOG1992|consen 572 IMRII---SILQSAIIPHAP--ELLRQLTEIVEEVSKNPS-NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQ 645 (960)
T ss_pred HHHHH---HhCHHhhhhhhh--HHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 34444 334443322221 1344444443 4443 5655444444433 3343333333334555777777
Q ss_pred HHhcCCCcccHHHHHHHHHHHhcCHhH-----H---------HHHHhccCChHHHHHHHhc
Q 014817 290 DRLADFDKCDAERALATVELLCRIPAG-----C---------AEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 290 ~lL~~~~~~~~~~a~~~L~~L~~~~~~-----~---------~~i~~~~g~i~~Lv~~l~~ 336 (418)
.+|..+=.+..--+..+|..|.....+ - ..+.+..|-||++|.++..
T Consensus 646 ~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 646 TILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 777653233333444444444422221 1 1233345888888888765
No 479
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=30.64 E-value=13 Score=28.65 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred ccCcCccccc--cCCeec--CCCCcccHHHHHHHH--HcCCCCCCCCCCCC
Q 014817 18 FRCPISLELM--CDPVTV--CTGQTYDRPSIESWV--ATGNTTCPVTRSPL 62 (418)
Q Consensus 18 ~~Cpi~~~~~--~dPv~~--~~g~~~~r~~i~~~~--~~~~~~cp~~~~~l 62 (418)
-.||+|...+ .|+... +-||+|.|-++.--. .-+...|+.|+...
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 5799999965 566544 569999885443321 12245699998664
No 480
>PF12773 DZR: Double zinc ribbon
Probab=30.51 E-value=44 Score=21.71 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCC
Q 014817 52 NTTCPVTRSPLT 63 (418)
Q Consensus 52 ~~~cp~~~~~l~ 63 (418)
...||.|+..+.
T Consensus 29 ~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 29 KKICPNCGAENP 40 (50)
T ss_pred CCCCcCCcCCCc
Confidence 345777766543
No 481
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.45 E-value=2.2e+02 Score=23.88 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred cccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH-HhhcCCCChhhhHHHHHHHHHH
Q 014817 191 ASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID-ILKNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 191 i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L 269 (418)
+++....+.|.+.+.+.+..+...++.++..+.. ......+..+ +=.++.++. +++........+..++.++..+
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~-~~~~~Lk~el---e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS-RFRSHLKLEL---EVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3355567777887777778888899999999942 2222333333 125666666 6665532346778899999999
Q ss_pred ccccccHH
Q 014817 270 CLVKQTRY 277 (418)
Q Consensus 270 ~~~~~n~~ 277 (418)
+.......
T Consensus 145 ~~~p~~l~ 152 (168)
T PF12783_consen 145 CKDPQFLV 152 (168)
T ss_pred HhChhHHH
Confidence 98665433
No 482
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.41 E-value=80 Score=29.63 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=42.2
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc---------------cccHHHHHHcCchHHHHHHhc
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV---------------KQTRYKAVAAGAAETLVDRLA 293 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~---------------~~n~~~i~~~G~v~~Lv~lL~ 293 (418)
...+..+++-|... +...+..|+++|..++.+ ..|...+.+.|++++|+.+|.
T Consensus 59 ~~~i~~ll~~L~~~--~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESS--DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhcccc--chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45777788888877 778888899999988652 126677789999999999996
No 483
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=30.26 E-value=88 Score=21.35 Aligned_cols=26 Identities=8% Similarity=0.117 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHH
Q 014817 51 GNTTCPVTRSPLTDFTLIPNHTLRRL 76 (418)
Q Consensus 51 ~~~~cp~~~~~l~~~~l~~n~~L~~~ 76 (418)
.+..|++|+++++++...-....+++
T Consensus 7 PH~HC~VCg~aIp~de~~CSe~C~ei 32 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVCSEECGEI 32 (64)
T ss_pred CCccccccCCcCCCccchHHHHHHHH
Confidence 36679999999887665444444443
No 484
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.13 E-value=6.4e+02 Score=29.65 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHhcCCCC-hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817 166 SPELAHESLALLVMFPLT-ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG 244 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~ 244 (418)
++.++.-+......+... +..+|+. ++..|+..+.+|+..-...|..+|..|+ . .+...+....-.|..
T Consensus 448 e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg~~~ev~~aL~vL~~L~---~--~~~~~l~~fa~~l~g 517 (1426)
T PF14631_consen 448 EPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSGNSQEVDAALDVLCELA---E--KNPSELQPFATFLKG 517 (1426)
T ss_dssp SHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHH---H--H-HHHHHHTHHHHHG
T ss_pred CHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCCcHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHH
Confidence 466666666544433222 2124444 5889999998898777788999999994 2 223344333446777
Q ss_pred HHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817 245 VIDILKNLSSYPRGLKVGIKALFALCLVK 273 (418)
Q Consensus 245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~ 273 (418)
+++.+.+- +..-.+.....|..|+..+
T Consensus 518 iLD~l~~L--s~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 518 ILDYLDNL--SLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp GGGGGGG----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHhcCC
Confidence 77777776 6777778888888888654
No 485
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.88 E-value=1.1e+02 Score=24.27 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=32.8
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA 281 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~ 281 (418)
+|+.|+.-|.+. ++++...|..+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~--~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP--SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 689999999988 889999999999999988865555554
No 486
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=29.87 E-value=41 Score=26.26 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=27.2
Q ss_pred cccCcCccccccCCeecCC-C-----CcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCT-G-----QTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~-g-----~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+.|||++.+-.+=|-+.. + .-|++.++.+....| ..=|.+++++..
T Consensus 40 ~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~ 92 (113)
T PF06416_consen 40 HLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITP 92 (113)
T ss_dssp HH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----T
T ss_pred HcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCCh
Confidence 4699999999888885531 1 368999999998873 345777777754
No 487
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.80 E-value=5e+02 Score=24.73 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-chh-hh-HH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-NLD-EI-FE 243 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~~~-g~-i~ 243 (418)
+++.-.+...|....... ..-+.+....-....-..++.++-++...|..+...+. ..++.....+. ... .. .+
T Consensus 139 ~~iaL~cg~mlrEcirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~ll--t~Hk~~vaEfl~~n~d~ff~e 215 (342)
T KOG1566|consen 139 PEIALTCGNMLRECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELL--TRHKSVVAEFLIRNYDNFFAE 215 (342)
T ss_pred hHHHHHHHHHHHHHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHH--HHhHHHHHHHHHhChhhhHHH
Confidence 555555556666665555 55666667777888888888888888888888888886 44543333332 111 12 22
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRIP 314 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 314 (418)
.--.+++++ +.-++..+..+|..+-....|...|.. ...+..++.+|++....++-+|--+-.....++
T Consensus 216 ~~~~Ll~s~--Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 216 VYEKLLRSE--NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhccc--ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 345577777 889999999999999888777666643 467888999999988899988888777666544
No 488
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=29.49 E-value=17 Score=19.63 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=10.1
Q ss_pred ccCcCccccccCCee
Q 014817 18 FRCPISLELMCDPVT 32 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~ 32 (418)
|.|.+|...|.++..
T Consensus 1 ~~C~~C~~~f~s~~~ 15 (25)
T PF12874_consen 1 FYCDICNKSFSSENS 15 (25)
T ss_dssp EEETTTTEEESSHHH
T ss_pred CCCCCCCCCcCCHHH
Confidence 567788777766543
No 489
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.16 E-value=4.3e+02 Score=23.78 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC---------C----c-cc----HHHHHHHHHHHhcCHhHH
Q 014817 256 PRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF---------D----K-CD----AERALATVELLCRIPAGC 317 (418)
Q Consensus 256 ~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~---------~----~-~~----~~~a~~~L~~L~~~~~~~ 317 (418)
..-...++..+..|...++....+.+.+.++.+.+.|..- + + .+ ...=...|..|+.+++|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4556677888888888877777777888998888888532 1 0 01 111235667888899999
Q ss_pred HHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 318 AEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
+.+-+. +....+.+++...+. .....-+|.++=.. +...|. .|-..|.++ +..+|-.|...|+.+.
T Consensus 158 ~lLe~~-~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~---------iLsKaLt~~-s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERW-NIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRI---------ILSKALTSG-SESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHC-CHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHH---------HHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 888774 888888887765433 22333344444321 222232 123334445 9999999999999875
Q ss_pred h
Q 014817 397 D 397 (418)
Q Consensus 397 ~ 397 (418)
+
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 4
No 490
>PHA00626 hypothetical protein
Probab=28.42 E-value=53 Score=22.22 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=4.8
Q ss_pred cCcCccc
Q 014817 19 RCPISLE 25 (418)
Q Consensus 19 ~Cpi~~~ 25 (418)
.||-|+.
T Consensus 2 ~CP~CGS 8 (59)
T PHA00626 2 SCPKCGS 8 (59)
T ss_pred CCCCCCC
Confidence 4777775
No 491
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=28.37 E-value=22 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=9.6
Q ss_pred CcccCcCcccccc
Q 014817 16 YHFRCPISLELMC 28 (418)
Q Consensus 16 ~~~~Cpi~~~~~~ 28 (418)
+|..||+|+.=-+
T Consensus 3 ~Wi~CP~CgnKTR 15 (55)
T PF14205_consen 3 EWILCPICGNKTR 15 (55)
T ss_pred eEEECCCCCCccc
Confidence 5789999985433
No 492
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=28.33 E-value=42 Score=31.65 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCCc-ccCcCccccccC----CeecCCCC-----cccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817 13 QIPYH-FRCPISLELMCD----PVTVCTGQ-----TYDRPSIESWVA-TGNTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~-~~Cpi~~~~~~d----Pv~~~~g~-----~~~r~~i~~~~~-~~~~~cp~~~~~l~ 63 (418)
+.|.+ ..|-||....-. |+..+|.. ..-|.|++.|+. .+...|..|...+.
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 33443 789999885533 56777632 234899999987 55778999987654
No 493
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=28.26 E-value=36 Score=26.23 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=24.2
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
..+|..|.||-|+. .+-||.+ .| ..++..||.|+...
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~~~h~~C~~CG~y~ 52 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------NIAIITCGNCGLYT 52 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------CcceEECCCCCCcc
Confidence 56788999999994 2333322 22 13577799998664
No 494
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=27.94 E-value=35 Score=18.91 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=10.7
Q ss_pred ccCcCccccccCCee
Q 014817 18 FRCPISLELMCDPVT 32 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~ 32 (418)
|.|++|...|.+.-.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T PF12171_consen 2 FYCDACDKYFSSENQ 16 (27)
T ss_dssp CBBTTTTBBBSSHHH
T ss_pred CCcccCCCCcCCHHH
Confidence 678888887776543
No 495
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=27.75 E-value=4.9e+02 Score=24.00 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=71.0
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--------cHHHHHHcCchHHHHHHhcCCC----cccHHHHHHHHH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--------TRYKAVAAGAAETLVDRLADFD----KCDAERALATVE 308 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--------n~~~i~~~G~v~~Lv~lL~~~~----~~~~~~a~~~L~ 308 (418)
..+.|..++-.|--+....+.++..|..|....+ +|-.+.=.+.+|.++.-+..++ ......++..|.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred CchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 3444455444443245677778888888865332 3444444556777777776655 133456666777
Q ss_pred HHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHH
Q 014817 309 LLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKR 386 (418)
Q Consensus 309 ~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 386 (418)
.+|.... -..+..++....+ .-....+....+...|+.+ -|+.- ...+..|+.+|.++ .+-.|.
T Consensus 141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~-----~~~l~~Ll~lL~n~-~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHE-----FQILTFLLGLLENG-PPWLRR 206 (262)
T ss_pred HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhH-----HHHHHHHHHHHhCC-cHHHHH
Confidence 6662100 0112222222221 1222222222222223221 12211 22445566666444 666666
Q ss_pred HHHHHHHHHHhhCCCC
Q 014817 387 KAQLLLKLLRDSWPQD 402 (418)
Q Consensus 387 ~A~~~L~~l~~~~~~~ 402 (418)
+...+|+.+-.+-+-+
T Consensus 207 ~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMR 222 (262)
T ss_pred HHHHHHHHHhccccCC
Confidence 6666666666654433
No 496
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=27.43 E-value=3.1e+02 Score=21.54 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817 299 DAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS 378 (418)
Q Consensus 299 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 378 (418)
++..++.+=..+..+.+.|.+..+. -..++. |..-...++..+..|+. .|+.=..+++.|+++.|+.+|.+
T Consensus 28 lkklvl~fek~i~kN~e~R~K~~dd---P~KFmd-----SE~dLd~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 28 LKKLVLSFEKRINKNQEMRIKYPDD---PEKFMD-----SEVDLDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCCC---HHHHHH-----hHHHHHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCC
Confidence 3344444445555666777666554 233332 34445566777777777 77888889999999999999976
Q ss_pred C
Q 014817 379 D 379 (418)
Q Consensus 379 ~ 379 (418)
.
T Consensus 99 e 99 (108)
T PF08216_consen 99 E 99 (108)
T ss_pred C
Confidence 5
No 497
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=27.30 E-value=19 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=12.3
Q ss_pred CCcccCcCccccccCC
Q 014817 15 PYHFRCPISLELMCDP 30 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dP 30 (418)
...|.||-|+.+|++-
T Consensus 15 E~~lrCPRC~~~FR~~ 30 (65)
T COG4049 15 EEFLRCPRCGMVFRRR 30 (65)
T ss_pred ceeeeCCchhHHHHHh
Confidence 3457899999988863
No 498
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=27.01 E-value=20 Score=28.97 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=7.3
Q ss_pred ccCcCccccc
Q 014817 18 FRCPISLELM 27 (418)
Q Consensus 18 ~~Cpi~~~~~ 27 (418)
..||.|+-++
T Consensus 29 ~hCp~Cg~PL 38 (131)
T COG1645 29 KHCPKCGTPL 38 (131)
T ss_pred hhCcccCCcc
Confidence 3788888754
No 499
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.78 E-value=4.2e+02 Score=22.96 Aligned_cols=72 Identities=13% Similarity=-0.059 Sum_probs=45.0
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP 314 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 314 (418)
.++.+++=|+.. +..-+--|...+..|-.. ...+..-+=.-.|.+|-..|.+.++++...++.+|..|+.+.
T Consensus 39 ~Lpif~dGL~Et--~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRET--EHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhcc--CccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 455555555555 444455555555555444 222222222456777778888889999999999999996543
No 500
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.69 E-value=7.5e+02 Score=27.34 Aligned_cols=158 Identities=11% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccchhhhhHhhchhh---hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHH
Q 014817 212 RVNSAALIEIVLAGMRSQELRAQISNLDE---IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETL 288 (418)
Q Consensus 212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g---~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~L 288 (418)
.......|.-| ....+.-..+.+ .| .|-.+.++-+.. +....-.+...|..|+.+......+++.|+|..|
T Consensus 326 ~~~~~q~l~~l---gey~e~lpv~~~-~g~~~~~~~~~~~~q~~--d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kl 399 (1516)
T KOG1832|consen 326 EKYCIQCLEIL---GEYVEVLPVLHE-KGVDVCIVLLERTSQLD--DSPLLPDVMKLICALAAHRKFAAMFVERRGILKL 399 (1516)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHH-hCchhhhhhhhhhhccc--cccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHH
Q ss_pred HHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-----CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 014817 289 VDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-----LTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDA 363 (418)
Q Consensus 289 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-----g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 363 (418)
+.+=+- .+..-..-.+|+.|......-+.+..++ .+|..-+.+|.-+....+.++... ..+|..-......+
T Consensus 400 l~vpr~--s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~f-f~~~f~frail~~f 476 (1516)
T KOG1832|consen 400 LAVPRV--SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALF-FAAAFVFRAILDAF 476 (1516)
T ss_pred hcCCCc--hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHH-HHHHHHHHHHHHHH
Q ss_pred HhcChHHHHHHHHhh
Q 014817 364 VSAGVLTQLLLLVQS 378 (418)
Q Consensus 364 ~~~g~i~~L~~ll~~ 378 (418)
-....+.+|+.+|+.
T Consensus 477 d~~d~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 477 DAQDSLQKLLAILKD 491 (1516)
T ss_pred hhhhHHHHHHHHHHH
Done!