Query 014817
Match_columns 418
No_of_seqs 272 out of 2270
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 8.7E-35 3E-39 278.9 26.5 272 120-400 48-337 (354)
2 3nmz_A APC variant protein; pr 100.0 1.2E-33 4.1E-38 278.9 25.1 272 122-401 166-454 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 4E-32 1.4E-36 270.8 21.2 282 103-400 3-363 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 2.5E-31 8.5E-36 268.1 23.5 285 100-400 46-387 (584)
5 3nmz_A APC variant protein; pr 100.0 7.1E-31 2.4E-35 259.1 24.5 290 102-397 70-408 (458)
6 3now_A UNC-45 protein, SD10334 100.0 4.2E-30 1.4E-34 267.3 29.2 283 101-398 420-738 (810)
7 3ul1_B Importin subunit alpha- 100.0 7.1E-30 2.4E-34 258.2 26.2 284 100-398 98-388 (510)
8 3tpo_A Importin subunit alpha- 100.0 2.8E-29 9.6E-34 255.1 28.7 284 100-398 117-407 (529)
9 1xm9_A Plakophilin 1; armadill 100.0 7.6E-30 2.6E-34 254.4 23.7 284 101-400 43-452 (457)
10 3l6x_A Catenin delta-1; cateni 100.0 4.5E-30 1.5E-34 258.9 21.6 284 101-398 89-477 (584)
11 3ul1_B Importin subunit alpha- 100.0 5.8E-30 2E-34 258.9 22.4 285 102-398 57-346 (510)
12 3nmw_A APC variant protein; AR 100.0 2.8E-29 9.5E-34 240.7 20.1 246 102-359 73-339 (354)
13 3tpo_A Importin subunit alpha- 100.0 1.1E-28 3.7E-33 250.8 24.7 284 103-398 77-365 (529)
14 3now_A UNC-45 protein, SD10334 100.0 2.2E-28 7.6E-33 254.4 23.9 283 102-400 495-785 (810)
15 4hxt_A De novo protein OR329; 100.0 1.2E-27 4E-32 218.7 24.5 241 146-401 2-245 (252)
16 4b8j_A Importin subunit alpha- 100.0 1.2E-27 4.2E-32 242.9 27.1 285 101-398 73-359 (528)
17 4b8j_A Importin subunit alpha- 100.0 6.8E-27 2.3E-31 237.4 29.5 281 102-398 117-401 (528)
18 4db8_A Armadillo-repeat protei 100.0 2.7E-27 9.3E-32 216.9 19.5 239 146-398 12-252 (252)
19 4db8_A Armadillo-repeat protei 99.9 9.1E-27 3.1E-31 213.3 21.1 237 102-354 12-251 (252)
20 4hxt_A De novo protein OR329; 99.9 2.6E-26 9E-31 209.7 23.7 238 103-355 3-242 (252)
21 1wa5_B Importin alpha subunit; 99.9 6.7E-26 2.3E-30 230.3 27.9 282 102-399 130-414 (530)
22 1wa5_B Importin alpha subunit; 99.9 7.9E-26 2.7E-30 229.7 27.5 282 102-398 87-371 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 1.9E-25 6.3E-30 221.6 29.4 280 102-398 64-348 (450)
24 1jdh_A Beta-catenin; beta-cate 99.9 1.6E-25 5.3E-30 226.9 22.6 282 101-398 58-340 (529)
25 2jdq_A Importin alpha-1 subuni 99.9 1.1E-24 3.9E-29 216.0 27.1 281 102-399 107-392 (450)
26 3tt9_A Plakophilin-2; cell adh 99.9 4.2E-26 1.5E-30 204.5 14.6 198 147-355 9-230 (233)
27 2z6h_A Catenin beta-1, beta-ca 99.9 3.8E-25 1.3E-29 229.9 22.7 282 101-398 55-337 (644)
28 3tt9_A Plakophilin-2; cell adh 99.9 8.7E-25 3E-29 196.0 16.1 197 195-398 8-230 (233)
29 1jdh_A Beta-catenin; beta-cate 99.9 2.9E-24 9.9E-29 217.6 21.6 279 102-398 101-386 (529)
30 4db6_A Armadillo repeat protei 99.9 1.3E-23 4.4E-28 186.9 22.5 199 193-398 10-210 (210)
31 2z6g_A B-catenin; FULL-length, 99.9 8.9E-24 3E-28 223.7 22.9 281 102-398 192-473 (780)
32 2z6h_A Catenin beta-1, beta-ca 99.9 1.1E-23 3.7E-28 219.0 22.8 279 100-398 12-293 (644)
33 4db6_A Armadillo repeat protei 99.9 3.5E-23 1.2E-27 184.1 18.9 198 144-354 10-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 7E-23 2.4E-27 209.5 22.0 251 138-400 449-731 (778)
35 2z6g_A B-catenin; FULL-length, 99.9 1.7E-22 5.8E-27 213.8 23.6 271 103-399 116-391 (780)
36 1xqr_A HSPBP1 protein; armadil 99.9 1.7E-21 5.7E-26 182.0 22.0 225 167-397 54-287 (296)
37 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-21 1E-25 180.3 22.5 199 102-313 28-239 (296)
38 3opb_A SWI5-dependent HO expre 99.9 7.2E-21 2.5E-25 194.7 23.7 327 34-397 283-683 (778)
39 1wgm_A Ubiquitin conjugation f 99.9 9E-22 3.1E-26 151.8 8.3 78 8-86 13-91 (98)
40 2kr4_A Ubiquitin conjugation f 99.9 6.2E-22 2.1E-26 148.9 7.2 73 12-85 9-81 (85)
41 2kre_A Ubiquitin conjugation f 99.8 8.8E-22 3E-26 152.4 7.2 75 11-86 23-97 (100)
42 2f42_A STIP1 homology and U-bo 99.8 1.6E-20 5.6E-25 159.4 6.9 75 11-85 100-174 (179)
43 1t1h_A Gspef-atpub14, armadill 99.8 4E-20 1.4E-24 137.3 6.0 75 11-85 2-76 (78)
44 2yu4_A E3 SUMO-protein ligase 99.8 3.8E-19 1.3E-23 136.5 5.5 74 13-86 3-85 (94)
45 2c2l_A CHIP, carboxy terminus 99.7 1.3E-18 4.5E-23 162.0 6.2 76 10-85 201-276 (281)
46 3grl_A General vesicular trans 99.7 6E-16 2E-20 154.7 22.7 289 95-397 14-342 (651)
47 3ztg_A E3 ubiquitin-protein li 99.7 1.1E-16 3.8E-21 122.6 8.4 75 11-85 7-84 (92)
48 2bay_A PRE-mRNA splicing facto 99.6 1.8E-16 6.3E-21 110.4 1.9 54 17-71 3-57 (61)
49 3grl_A General vesicular trans 99.6 2.9E-13 9.9E-18 135.4 25.1 285 102-397 60-394 (651)
50 3fl2_A E3 ubiquitin-protein li 99.6 1.1E-15 3.9E-20 123.8 5.3 71 13-83 48-119 (124)
51 3htk_C E3 SUMO-protein ligase 99.5 1.5E-15 5.1E-20 134.8 3.4 70 14-83 178-251 (267)
52 1z6u_A NP95-like ring finger p 99.5 3.5E-15 1.2E-19 124.5 5.3 70 13-82 74-144 (150)
53 3l11_A E3 ubiquitin-protein li 99.5 1.5E-15 5E-20 121.4 2.5 79 3-81 1-86 (115)
54 2y43_A E3 ubiquitin-protein li 99.5 7.9E-15 2.7E-19 113.8 4.1 72 13-85 18-90 (99)
55 3m62_A Ubiquitin conjugation f 99.5 1.1E-14 3.9E-19 150.7 6.4 74 12-86 886-960 (968)
56 2ecy_A TNF receptor-associated 99.5 3.5E-14 1.2E-18 101.3 6.8 60 8-67 6-65 (66)
57 2yur_A Retinoblastoma-binding 99.5 3.8E-14 1.3E-18 103.6 6.6 65 6-70 4-71 (74)
58 3lrq_A E3 ubiquitin-protein li 99.5 1.9E-14 6.4E-19 111.7 4.6 72 13-84 18-90 (100)
59 2ecw_A Tripartite motif-contai 99.5 1E-14 3.5E-19 109.9 3.0 66 10-75 12-82 (85)
60 2egp_A Tripartite motif-contai 99.5 1.9E-15 6.6E-20 112.2 -1.6 66 10-75 5-76 (79)
61 2djb_A Polycomb group ring fin 99.5 1.2E-13 4.1E-18 100.4 7.3 61 9-70 7-68 (72)
62 2ckl_A Polycomb group ring fin 99.5 3.6E-14 1.2E-18 111.9 4.8 69 13-82 11-84 (108)
63 2ecv_A Tripartite motif-contai 99.5 1.5E-14 5E-19 109.0 2.4 67 9-75 11-82 (85)
64 2csy_A Zinc finger protein 183 99.5 1.4E-13 4.8E-18 102.5 7.6 65 9-75 7-71 (81)
65 3hct_A TNF receptor-associated 99.4 4.8E-14 1.6E-18 113.0 4.8 71 11-81 12-82 (118)
66 2ysj_A Tripartite motif-contai 99.4 1.6E-13 5.3E-18 96.9 6.5 54 5-58 8-63 (63)
67 1jm7_B BARD1, BRCA1-associated 99.4 3E-14 1E-18 114.0 2.2 69 13-84 18-87 (117)
68 2ysl_A Tripartite motif-contai 99.4 2.2E-13 7.5E-18 99.3 6.6 62 6-67 9-72 (73)
69 2ckl_B Ubiquitin ligase protei 99.4 7.3E-14 2.5E-18 119.0 4.3 71 13-83 50-122 (165)
70 3ltm_A Alpha-REP4; protein eng 99.4 2.5E-11 8.5E-16 107.4 19.8 189 145-400 18-206 (211)
71 1jm7_A BRCA1, breast cancer ty 99.4 2E-13 6.9E-18 108.4 4.2 69 14-82 18-88 (112)
72 1rmd_A RAG1; V(D)J recombinati 99.4 1E-13 3.6E-18 110.7 2.5 69 12-80 18-87 (116)
73 4ayc_A E3 ubiquitin-protein li 99.4 2.7E-13 9.1E-18 111.8 4.0 63 15-80 51-113 (138)
74 1g25_A CDK-activating kinase a 99.4 5.6E-13 1.9E-17 94.7 4.9 55 16-70 2-61 (65)
75 2ecj_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 90.6 5.7 51 8-58 6-58 (58)
76 3ltj_A Alpharep-4; protein eng 99.3 1E-10 3.4E-15 102.6 19.6 186 145-397 13-198 (201)
77 3hcs_A TNF receptor-associated 99.3 7.9E-13 2.7E-17 113.2 4.4 70 11-80 12-81 (170)
78 2d8t_A Dactylidin, ring finger 99.3 1.1E-12 3.8E-17 94.9 4.1 56 8-64 6-61 (71)
79 3knv_A TNF receptor-associated 99.3 2.2E-13 7.6E-18 112.2 0.3 67 13-79 27-102 (141)
80 2ct2_A Tripartite motif protei 99.3 3.6E-12 1.2E-16 96.4 7.0 58 8-65 6-69 (88)
81 1oyz_A Hypothetical protein YI 99.3 3.1E-10 1.1E-14 104.9 20.8 225 103-396 24-249 (280)
82 3ltm_A Alpha-REP4; protein eng 99.3 2.5E-10 8.5E-15 100.9 19.2 187 100-354 17-203 (211)
83 2ea6_A Ring finger protein 4; 99.3 3E-12 1E-16 92.0 5.0 59 5-64 3-68 (69)
84 3ltj_A Alpharep-4; protein eng 99.3 5.6E-10 1.9E-14 97.8 20.3 187 99-353 11-197 (201)
85 3ng2_A RNF4, snurf, ring finge 99.3 2.3E-12 7.8E-17 93.3 3.7 57 13-70 6-69 (71)
86 2ect_A Ring finger protein 126 99.2 1.2E-11 4.1E-16 91.2 5.8 63 7-70 5-70 (78)
87 1e4u_A Transcriptional repress 99.2 1.4E-11 4.8E-16 90.2 5.6 56 12-67 6-65 (78)
88 1oyz_A Hypothetical protein YI 99.2 7.9E-10 2.7E-14 102.1 18.9 200 143-396 20-220 (280)
89 2xeu_A Ring finger protein 4; 99.2 7E-12 2.4E-16 88.6 2.5 54 16-70 2-62 (64)
90 4gmo_A Putative uncharacterize 99.1 6.1E-10 2.1E-14 116.0 15.2 195 196-398 35-259 (684)
91 4fdd_A Transportin-1; heat rep 99.1 2.4E-09 8.4E-14 114.4 19.8 273 102-398 128-430 (852)
92 2ep4_A Ring finger protein 24; 99.1 1.3E-10 4.6E-15 84.6 6.2 56 8-64 6-64 (74)
93 2kiz_A E3 ubiquitin-protein li 99.0 3.8E-10 1.3E-14 80.9 6.5 53 12-65 9-64 (69)
94 1chc_A Equine herpes virus-1 r 99.0 1.6E-10 5.4E-15 82.6 4.3 47 16-63 4-51 (68)
95 4fdd_A Transportin-1; heat rep 99.0 1.7E-09 5.8E-14 115.6 13.8 276 104-399 176-473 (852)
96 2ecn_A Ring finger protein 141 99.0 5.5E-11 1.9E-15 85.6 1.5 53 12-66 10-62 (70)
97 1bor_A Transcription factor PM 99.0 7.1E-11 2.4E-15 80.8 1.9 46 15-64 4-49 (56)
98 2ecm_A Ring finger and CHY zin 99.0 1.9E-10 6.5E-15 78.5 4.0 47 16-63 4-54 (55)
99 4gmo_A Putative uncharacterize 99.0 3.7E-09 1.3E-13 110.0 14.3 196 148-354 36-258 (684)
100 4ap4_A E3 ubiquitin ligase RNF 99.0 1.6E-10 5.6E-15 94.4 3.0 55 15-70 5-66 (133)
101 2l0b_A E3 ubiquitin-protein li 99.0 3.6E-10 1.2E-14 85.7 4.4 50 14-64 37-89 (91)
102 1iym_A EL5; ring-H2 finger, ub 99.0 3.3E-10 1.1E-14 77.3 3.7 49 14-63 2-54 (55)
103 1x4j_A Ring finger protein 38; 99.0 4.9E-10 1.7E-14 81.7 4.4 50 14-64 20-72 (75)
104 1v87_A Deltex protein 2; ring- 98.9 1E-09 3.5E-14 87.1 5.1 50 14-63 22-93 (114)
105 1ibr_B P95, importin beta-1 su 98.9 2.2E-08 7.5E-13 98.7 15.6 281 102-400 128-440 (462)
106 4ic3_A E3 ubiquitin-protein li 98.9 5.7E-10 2E-14 81.0 1.6 45 14-63 21-66 (74)
107 1b3u_A Protein (protein phosph 98.8 9.1E-08 3.1E-12 97.2 18.2 265 105-398 284-549 (588)
108 2ecg_A Baculoviral IAP repeat- 98.8 4.3E-10 1.5E-14 82.0 -0.3 47 13-64 21-68 (75)
109 1b3u_A Protein (protein phosph 98.8 2.4E-07 8.2E-12 94.1 19.8 253 117-397 100-353 (588)
110 2y1n_A E3 ubiquitin-protein li 98.8 3.3E-09 1.1E-13 100.4 4.5 49 17-65 332-380 (389)
111 2vgl_B AP-2 complex subunit be 98.7 3.6E-07 1.2E-11 93.5 18.9 266 105-400 124-422 (591)
112 2ecl_A Ring-box protein 2; RNF 98.7 1.4E-08 4.9E-13 75.0 5.6 48 16-64 14-76 (81)
113 4ap4_A E3 ubiquitin ligase RNF 98.7 2.8E-09 9.7E-14 86.9 1.5 55 15-70 70-131 (133)
114 2vgl_B AP-2 complex subunit be 98.7 9.3E-08 3.2E-12 97.9 13.2 260 103-400 50-314 (591)
115 1wim_A KIAA0161 protein; ring 98.6 4.4E-09 1.5E-13 80.2 0.8 67 16-83 4-84 (94)
116 2vje_A E3 ubiquitin-protein li 98.6 2.1E-08 7.2E-13 70.4 3.2 48 15-63 6-56 (64)
117 1w63_A Adapter-related protein 98.6 5.1E-06 1.7E-10 85.4 22.3 253 105-399 145-416 (618)
118 1qgr_A Protein (importin beta 98.6 5.4E-06 1.8E-10 88.4 23.1 280 102-400 128-440 (876)
119 2vje_B MDM4 protein; proto-onc 98.6 2.7E-08 9.3E-13 69.5 2.9 47 16-63 6-55 (63)
120 1qgr_A Protein (importin beta 98.6 3.2E-06 1.1E-10 90.1 20.3 277 105-399 175-481 (876)
121 2bpt_A Importin beta-1 subunit 98.5 2.5E-06 8.4E-11 90.8 17.9 261 117-398 382-669 (861)
122 1w63_A Adapter-related protein 98.5 1.5E-05 5.1E-10 81.9 22.3 256 104-398 36-343 (618)
123 3dpl_R Ring-box protein 1; ubi 98.5 9.6E-08 3.3E-12 74.0 4.3 46 17-63 37-100 (106)
124 2yho_A E3 ubiquitin-protein li 98.5 2.6E-08 8.9E-13 73.0 1.0 47 13-64 14-61 (79)
125 2ea5_A Cell growth regulator w 98.5 1.9E-07 6.5E-12 66.2 5.1 49 11-64 9-58 (68)
126 1ibr_B P95, importin beta-1 su 98.5 8.7E-06 3E-10 79.9 19.1 237 146-398 128-396 (462)
127 3t6p_A Baculoviral IAP repeat- 98.4 6.1E-08 2.1E-12 91.3 1.0 44 15-63 293-337 (345)
128 1u6g_C TIP120 protein, CAND1; 98.4 9.5E-07 3.2E-11 98.1 10.3 274 101-400 5-287 (1230)
129 2bpt_A Importin beta-1 subunit 98.3 1.9E-05 6.4E-10 84.0 19.6 278 102-399 134-442 (861)
130 2qk2_A LP04448P; mini spindles 98.3 7.1E-06 2.4E-10 73.7 13.2 186 198-399 18-207 (242)
131 1te4_A Conserved protein MTH18 98.3 2.6E-07 8.9E-12 74.9 3.0 120 145-309 11-130 (131)
132 3b2a_A TON_1937, putative unch 98.3 4.6E-06 1.6E-10 72.5 10.5 220 147-397 34-261 (265)
133 2d8s_A Cellular modulator of i 98.2 2.9E-06 9.9E-11 62.0 6.2 50 15-64 13-70 (80)
134 2qk2_A LP04448P; mini spindles 98.2 7E-06 2.4E-10 73.7 10.1 182 150-354 19-205 (242)
135 3b2a_A TON_1937, putative unch 98.1 1.8E-05 6.2E-10 68.8 10.8 213 68-314 7-220 (265)
136 2vgl_A Adaptor protein complex 98.1 0.00018 6.1E-09 73.8 20.2 257 106-399 150-435 (621)
137 4a0k_B E3 ubiquitin-protein li 98.1 3.9E-07 1.3E-11 71.6 0.0 45 18-63 49-111 (117)
138 1te4_A Conserved protein MTH18 98.1 2.1E-07 7.3E-12 75.4 -1.7 121 193-351 10-130 (131)
139 2qk1_A Protein STU2; STU2P, XM 98.1 4.9E-05 1.7E-09 68.6 13.4 193 200-399 21-222 (249)
140 2db0_A 253AA long hypothetical 98.0 0.002 6.7E-08 54.0 21.0 215 146-398 32-247 (253)
141 3dad_A FH1/FH2 domain-containi 98.0 9.5E-05 3.2E-09 68.3 14.0 144 255-398 131-287 (339)
142 2qk1_A Protein STU2; STU2P, XM 98.0 8.3E-05 2.8E-09 67.1 13.6 179 166-354 29-220 (249)
143 1ho8_A Vacuolar ATP synthase s 98.0 0.00013 4.5E-09 70.7 15.6 223 168-398 183-477 (480)
144 2vgl_A Adaptor protein complex 98.0 0.0031 1E-07 64.6 25.7 258 105-397 114-398 (621)
145 3dad_A FH1/FH2 domain-containi 97.9 0.00029 1E-08 65.0 14.8 186 197-387 120-326 (339)
146 1u6g_C TIP120 protein, CAND1; 97.9 3.7E-05 1.3E-09 85.3 10.1 230 148-399 8-245 (1230)
147 3tjz_B Coatomer subunit gamma; 97.7 0.00052 1.8E-08 64.8 13.6 214 148-400 106-319 (355)
148 2iw3_A Elongation factor 3A; a 97.7 0.0022 7.4E-08 68.3 19.6 251 122-400 70-327 (986)
149 3vk6_A E3 ubiquitin-protein li 97.6 3.4E-05 1.2E-09 57.3 3.7 46 19-64 3-49 (101)
150 4ady_A RPN2, 26S proteasome re 97.6 0.003 1E-07 66.6 18.8 202 147-398 473-677 (963)
151 2ct0_A Non-SMC element 1 homol 97.4 0.00017 5.7E-09 51.5 4.7 46 18-63 16-63 (74)
152 2db0_A 253AA long hypothetical 97.4 0.016 5.6E-07 48.5 16.7 182 193-399 30-212 (253)
153 4ady_A RPN2, 26S proteasome re 97.4 0.016 5.4E-07 61.2 20.7 245 104-398 394-642 (963)
154 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00036 1.2E-08 47.6 4.8 47 17-63 6-58 (60)
155 3tjz_B Coatomer subunit gamma; 97.2 0.019 6.5E-07 54.1 17.3 207 147-397 69-279 (355)
156 2iw3_A Elongation factor 3A; a 97.1 0.032 1.1E-06 59.4 19.8 261 104-399 16-282 (986)
157 1ho8_A Vacuolar ATP synthase s 96.9 0.23 8E-06 48.1 22.3 238 145-400 76-353 (480)
158 3ebb_A Phospholipase A2-activa 96.8 0.0079 2.7E-07 55.5 11.0 192 198-394 106-303 (304)
159 4ffb_C Protein STU2; tubulin f 96.5 0.022 7.4E-07 51.8 11.7 192 197-399 12-214 (278)
160 1wa5_C Importin alpha RE-expor 96.4 0.041 1.4E-06 59.2 15.0 221 166-399 418-672 (960)
161 3oc3_A Helicase MOT1, MOT1; re 96.4 0.034 1.2E-06 54.7 12.5 250 104-393 176-432 (800)
162 2fv2_A RCD1 required for cell 96.2 0.23 7.8E-06 43.9 15.7 238 102-352 3-266 (268)
163 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0022 7.7E-08 48.8 2.6 33 16-48 2-37 (101)
164 3ebb_A Phospholipase A2-activa 96.1 0.26 8.9E-06 45.3 16.7 169 102-282 103-274 (304)
165 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0016 5.4E-08 60.0 1.4 47 17-63 308-372 (381)
166 3i2d_A E3 SUMO-protein ligase 95.9 0.0068 2.3E-07 56.6 4.6 63 17-79 249-315 (371)
167 4ffb_C Protein STU2; tubulin f 95.8 0.11 3.7E-06 47.1 12.5 185 107-312 14-212 (278)
168 2fv2_A RCD1 required for cell 95.6 0.41 1.4E-05 42.3 14.6 142 255-398 14-175 (268)
169 2of3_A ZYG-9; multifunctional 95.3 0.28 9.4E-06 44.1 12.8 169 117-311 59-235 (266)
170 2x1g_F Cadmus; transport prote 95.3 1.9 6.5E-05 46.2 21.9 215 166-399 477-724 (971)
171 4fo9_A E3 SUMO-protein ligase 95.2 0.016 5.5E-07 54.0 4.6 63 17-79 215-281 (360)
172 3c2g_A SYS-1 protein; beta-cat 94.0 1.1 3.9E-05 41.3 13.5 115 172-293 262-377 (619)
173 3nw0_A Non-structural maintena 93.7 0.059 2E-06 47.7 4.5 47 18-64 181-229 (238)
174 2x19_B Importin-13; nuclear tr 93.7 4.2 0.00014 43.4 20.0 216 166-400 462-717 (963)
175 1upk_A MO25 protein; transfera 93.1 2.5 8.5E-05 38.9 14.4 143 166-313 136-284 (341)
176 1wa5_C Importin alpha RE-expor 93.0 0.85 2.9E-05 48.9 13.1 192 147-354 288-525 (960)
177 2of3_A ZYG-9; multifunctional 92.7 3.4 0.00012 36.9 14.6 176 199-399 50-238 (266)
178 3u0r_A Apoptosis inhibitor 5; 92.4 0.85 2.9E-05 44.1 10.7 122 205-351 38-160 (507)
179 4hat_C Exportin-1; heat repeat 92.1 1.2 4E-05 48.2 12.7 141 207-354 465-618 (1023)
180 1upk_A MO25 protein; transfera 92.1 7.2 0.00024 35.9 16.0 203 189-399 72-285 (341)
181 2f31_A Diaphanous protein homo 92.0 3.7 0.00013 35.8 13.9 180 107-293 5-208 (233)
182 3eg5_B Protein diaphanous homo 91.8 6.8 0.00023 37.0 16.4 184 105-295 69-276 (383)
183 2x1g_F Cadmus; transport prote 91.4 3.8 0.00013 43.8 15.9 218 117-354 477-722 (971)
184 3oc3_A Helicase MOT1, MOT1; re 91.2 0.58 2E-05 46.2 8.1 167 146-349 263-431 (800)
185 2f31_A Diaphanous protein homo 90.9 0.84 2.9E-05 40.1 8.4 118 281-398 41-181 (233)
186 3eg5_B Protein diaphanous homo 90.6 1.7 5.8E-05 41.2 10.8 121 277-398 104-247 (383)
187 1weo_A Cellulose synthase, cat 90.5 0.39 1.3E-05 34.6 4.7 46 18-63 17-69 (93)
188 3ibv_A Exportin-T; karyopherin 90.3 10 0.00036 40.6 17.9 237 98-364 2-272 (980)
189 1x5b_A Signal transducing adap 89.8 1.5 5.1E-05 36.1 8.5 75 326-400 53-128 (163)
190 2x19_B Importin-13; nuclear tr 89.8 6.8 0.00023 41.7 16.0 178 205-397 459-646 (963)
191 4hat_C Exportin-1; heat repeat 89.5 1.3 4.5E-05 47.8 10.1 98 255-354 466-569 (1023)
192 3u0r_A Apoptosis inhibitor 5; 88.3 19 0.00066 34.8 18.9 133 102-269 29-161 (507)
193 3ldz_A STAM-1, signal transduc 88.2 1.8 6.2E-05 34.6 7.7 74 326-400 43-117 (140)
194 2bnx_A Diaphanous protein homo 88.1 15 0.00051 34.7 15.4 182 106-294 8-213 (386)
195 3zyq_A Hepatocyte growth facto 87.6 1.6 5.4E-05 38.1 7.6 75 326-400 46-121 (226)
196 3c2g_A SYS-1 protein; beta-cat 86.4 16 0.00054 33.9 13.5 128 266-395 266-401 (619)
197 2bnx_A Diaphanous protein homo 85.6 3.3 0.00011 39.3 9.2 117 282-398 46-185 (386)
198 3g2s_A C-terminal fragment of 85.0 3.9 0.00013 33.0 8.1 74 326-399 49-128 (149)
199 3mjh_B Early endosome antigen 85.0 0.19 6.5E-06 29.4 0.2 17 17-33 5-21 (34)
200 1dvp_A HRS, hepatocyte growth 84.6 2.8 9.5E-05 36.3 7.6 74 326-399 43-117 (220)
201 1lsh_A Lipovitellin (LV-1N, LV 84.0 51 0.0017 35.6 22.6 134 196-351 392-540 (1056)
202 1juq_A ADP-ribosylation factor 83.7 3.4 0.00012 34.2 7.4 74 326-399 51-130 (171)
203 3m1i_C Exportin-1; heat repeat 83.4 19 0.00066 38.7 15.3 100 166-272 466-570 (1049)
204 1mhq_A ADP-ribosylation factor 83.4 3.3 0.00011 33.4 7.1 74 326-399 39-118 (148)
205 3l9t_A Putative uncharacterize 82.8 11 0.00039 32.7 10.6 144 197-365 73-218 (240)
206 3ibv_A Exportin-T; karyopherin 82.6 8 0.00027 41.5 11.6 216 166-398 456-731 (980)
207 1lsh_A Lipovitellin (LV-1N, LV 82.5 19 0.00066 38.9 14.7 124 200-354 445-576 (1056)
208 3l9t_A Putative uncharacterize 81.2 6 0.00021 34.5 8.2 148 101-281 69-218 (240)
209 3m1i_C Exportin-1; heat repeat 78.9 25 0.00084 37.9 14.1 111 242-354 453-569 (1049)
210 2jvx_A NF-kappa-B essential mo 78.1 0.59 2E-05 26.0 0.5 18 15-32 1-18 (28)
211 3a6p_A Exportin-5; exportin-5, 76.4 58 0.002 35.7 16.3 143 103-271 12-162 (1204)
212 1lrv_A LRV, leucine-rich repea 75.3 1.4 4.7E-05 39.0 2.4 34 184-217 63-96 (244)
213 1elk_A Target of MYB1; superhe 74.4 10 0.00034 30.8 7.3 75 326-400 54-133 (157)
214 1x5b_A Signal transducing adap 73.4 16 0.00056 29.7 8.4 74 195-271 52-125 (163)
215 3qml_C Protein SLS1, nucleotid 72.9 26 0.0009 31.7 10.1 154 102-271 22-189 (315)
216 2ko5_A Ring finger protein Z; 72.6 2.5 8.7E-05 30.8 2.8 46 17-65 28-74 (99)
217 3qml_C Protein SLS1, nucleotid 72.1 57 0.002 29.5 12.2 137 167-311 42-188 (315)
218 6rxn_A Rubredoxin; electron tr 71.9 1.2 4E-05 28.1 0.8 14 13-26 26-39 (46)
219 3gjx_A Exportin-1; transport, 70.1 60 0.0021 35.1 14.0 223 97-354 23-275 (1073)
220 1lrv_A LRV, leucine-rich repea 69.3 1.3 4.6E-05 39.1 0.9 18 200-217 127-144 (244)
221 1e8j_A Rubredoxin; iron-sulfur 69.0 1.8 6.1E-05 28.1 1.2 15 12-26 31-45 (52)
222 4rxn_A Rubredoxin; electron tr 67.7 1.6 5.6E-05 28.5 0.8 15 12-26 31-45 (54)
223 3ldz_A STAM-1, signal transduc 67.6 27 0.00093 27.6 8.3 73 195-271 42-114 (140)
224 1vdy_A Hypothetical protein (R 67.3 11 0.00037 30.0 5.7 75 326-400 50-133 (140)
225 2jne_A Hypothetical protein YF 66.2 0.21 7.2E-06 36.6 -4.0 41 17-63 32-72 (101)
226 3zyq_A Hepatocyte growth facto 65.2 25 0.00087 30.3 8.3 74 195-271 45-118 (226)
227 1juq_A ADP-ribosylation factor 63.7 30 0.001 28.4 8.1 72 196-271 51-128 (171)
228 1m3v_A FLIN4, fusion of the LI 63.3 3.7 0.00013 31.8 2.3 49 18-67 33-84 (122)
229 1yk4_A Rubredoxin, RD; electro 63.1 2.2 7.7E-05 27.6 0.8 14 13-26 31-44 (52)
230 2kn9_A Rubredoxin; metalloprot 62.7 2.7 9.1E-05 30.0 1.2 18 12-29 55-72 (81)
231 2v3b_B Rubredoxin 2, rubredoxi 62.3 2.3 7.9E-05 27.9 0.8 14 13-26 32-45 (55)
232 1mhq_A ADP-ribosylation factor 62.3 29 0.00098 27.7 7.6 75 195-271 38-116 (148)
233 3pst_A Protein DOA1; protein d 61.5 55 0.0019 31.1 10.4 102 166-275 275-393 (425)
234 3gae_A Protein DOA1; UFD3, CDC 60.1 17 0.00057 32.1 6.3 135 121-274 71-220 (253)
235 2cs3_A Protein C14ORF4, MY039 60.0 16 0.00054 25.7 4.7 35 15-49 13-51 (93)
236 2kre_A Ubiquitin conjugation f 59.9 5.3 0.00018 29.7 2.5 33 17-51 63-95 (100)
237 1dvp_A HRS, hepatocyte growth 59.6 38 0.0013 29.0 8.4 73 195-270 42-114 (220)
238 3g2s_A C-terminal fragment of 58.8 55 0.0019 26.1 8.6 74 196-271 49-126 (149)
239 1dx8_A Rubredoxin; electron tr 58.5 3 0.0001 28.9 0.8 20 12-31 35-54 (70)
240 3o2t_A Symplekin; heat repeat, 58.1 1.2E+02 0.0042 28.4 13.2 146 100-269 23-181 (386)
241 3vhs_A ATPase wrnip1; zinc fin 56.5 2.9 9.9E-05 22.2 0.4 12 18-29 7-18 (29)
242 1s24_A Rubredoxin 2; electron 54.7 3.8 0.00013 29.6 0.9 15 12-26 63-77 (87)
243 3l3f_X Protein DOA1, DOA1/UFD3 54.6 48 0.0016 30.8 8.6 132 121-273 180-328 (362)
244 2o35_A Hypothetical protein DU 50.5 6.7 0.00023 28.8 1.6 12 39-50 43-54 (105)
245 3fyb_A Protein of unknown func 50.1 6.9 0.00024 28.7 1.6 12 39-50 42-53 (104)
246 3gjx_A Exportin-1; transport, 48.9 32 0.0011 37.2 7.3 97 255-354 492-595 (1073)
247 2jrp_A Putative cytoplasmic pr 48.1 0.88 3E-05 32.4 -3.3 40 18-63 3-42 (81)
248 1wgm_A Ubiquitin conjugation f 47.3 8.9 0.0003 28.3 2.0 32 17-50 57-88 (98)
249 2xqn_T Testin, TESS; metal-bin 44.1 18 0.00062 27.7 3.4 47 16-65 29-76 (126)
250 3o2t_A Symplekin; heat repeat, 44.0 1.6E+02 0.0055 27.5 10.5 130 282-417 62-209 (386)
251 2xjy_A Rhombotin-2; oncoprotei 43.0 14 0.00049 28.5 2.7 50 15-65 27-79 (131)
252 3t7l_A Zinc finger FYVE domain 40.8 19 0.00064 26.1 2.8 27 19-45 22-52 (90)
253 3gs3_A Symplekin, LD45768P; he 38.8 2E+02 0.0068 25.1 13.1 127 285-417 55-196 (257)
254 2kpi_A Uncharacterized protein 38.4 20 0.00068 23.4 2.3 16 12-27 5-20 (56)
255 3rru_A TOM1L1 protein; structu 38.0 39 0.0013 27.1 4.6 75 326-400 54-133 (152)
256 1elk_A Target of MYB1; superhe 37.0 1.5E+02 0.005 23.7 8.0 74 196-271 54-130 (157)
257 2kkx_A Uncharacterized protein 36.3 35 0.0012 25.1 3.5 50 15-65 25-80 (102)
258 1rut_X Flinc4, fusion protein 36.0 9.8 0.00034 31.8 0.7 49 16-65 31-82 (188)
259 1x62_A C-terminal LIM domain p 34.8 39 0.0013 23.3 3.7 42 13-63 11-52 (79)
260 2jtn_A LIM domain-binding prot 33.6 42 0.0014 27.6 4.3 46 17-65 87-132 (182)
261 2ebt_A Krueppel-like factor 5; 33.6 73 0.0025 22.3 5.3 51 13-63 11-86 (100)
262 3gs3_A Symplekin, LD45768P; he 32.9 2.5E+02 0.0085 24.5 12.2 145 102-269 15-171 (257)
263 2rgt_A Fusion of LIM/homeobox 32.1 46 0.0016 27.0 4.3 48 15-65 31-78 (169)
264 1x61_A Thyroid receptor intera 31.0 49 0.0017 22.1 3.6 33 18-50 34-67 (72)
265 2cup_A Skeletal muscle LIM-pro 29.9 37 0.0013 24.7 3.0 45 17-64 33-78 (101)
266 3uk3_C Zinc finger protein 217 29.7 16 0.00055 22.8 0.8 40 17-63 4-43 (57)
267 3pwf_A Rubrerythrin; non heme 29.6 18 0.00061 29.8 1.3 21 34-62 143-163 (170)
268 3vth_A Hydrogenase maturation 29.6 45 0.0015 34.5 4.5 70 13-82 106-214 (761)
269 3pst_A Protein DOA1; protein d 29.1 1E+02 0.0035 29.3 6.5 104 203-312 270-389 (425)
270 2gmg_A Hypothetical protein PF 28.8 11 0.00039 28.1 -0.1 30 26-61 64-93 (105)
271 2jmo_A Parkin; IBR, E3 ligase, 28.6 6.6 0.00023 27.8 -1.4 31 17-47 25-68 (80)
272 2lcq_A Putative toxin VAPC6; P 28.3 11 0.00039 30.7 -0.2 23 33-62 136-158 (165)
273 1wfh_A Zinc finger (AN1-like) 28.3 74 0.0025 21.3 3.8 28 16-43 14-42 (64)
274 2d8x_A Protein pinch; LIM doma 27.7 38 0.0013 22.6 2.5 29 18-46 32-61 (70)
275 2kdx_A HYPA, hydrogenase/ureas 27.3 22 0.00076 27.2 1.3 10 52-61 89-99 (119)
276 1wig_A KIAA1808 protein; LIM d 27.2 25 0.00085 24.0 1.5 30 18-47 32-63 (73)
277 2dar_A PDZ and LIM domain prot 26.6 45 0.0015 23.7 2.9 39 19-66 27-65 (90)
278 2d8z_A Four and A half LIM dom 26.5 47 0.0016 22.1 2.8 29 18-46 32-61 (70)
279 2l4z_A DNA endonuclease RBBP8, 26.2 42 0.0014 25.7 2.8 38 17-63 61-99 (123)
280 2cur_A Skeletal muscle LIM-pro 25.9 61 0.0021 21.4 3.3 31 18-48 32-63 (69)
281 3l3f_X Protein DOA1, DOA1/UFD3 25.8 92 0.0032 28.9 5.5 103 204-312 208-326 (362)
282 2lce_A B-cell lymphoma 6 prote 25.6 22 0.00075 23.8 1.0 38 15-63 15-56 (74)
283 1wg2_A Zinc finger (AN1-like) 25.2 91 0.0031 20.9 3.8 27 16-42 14-41 (64)
284 1x6a_A LIMK-2, LIM domain kina 24.3 65 0.0022 22.2 3.3 30 18-47 42-74 (81)
285 4g9i_A Hydrogenase maturation 23.5 1.3E+02 0.0043 31.2 6.5 124 13-140 101-272 (772)
286 1ard_A Yeast transcription fac 23.5 28 0.00097 17.5 1.0 11 18-28 3-13 (29)
287 1wfp_A Zinc finger (AN1-like) 23.0 1E+02 0.0034 21.3 3.8 27 17-43 25-52 (74)
288 1iml_A CRIP, cysteine rich int 22.9 56 0.0019 22.2 2.7 44 16-62 26-71 (76)
289 2k5c_A Uncharacterized protein 22.6 21 0.00072 25.0 0.3 11 18-28 52-62 (95)
290 1nyp_A Pinch protein; LIM doma 22.4 47 0.0016 21.8 2.1 36 19-63 7-42 (66)
291 2ctd_A Zinc finger protein 512 22.3 41 0.0014 24.2 2.0 29 35-63 40-73 (96)
292 2m0e_A Zinc finger and BTB dom 22.1 32 0.0011 17.2 1.0 10 18-27 3-12 (29)
293 2l3k_A Rhombotin-2, linker, LI 22.0 51 0.0017 25.1 2.6 34 16-49 35-70 (123)
294 1klr_A Zinc finger Y-chromosom 22.0 33 0.0011 17.3 1.1 12 18-29 3-14 (30)
295 1rik_A E6APC1 peptide; E6-bind 21.9 28 0.00096 17.6 0.7 12 18-29 3-14 (29)
296 1x64_A Alpha-actinin-2 associa 21.6 1.4E+02 0.0049 20.8 4.8 44 14-66 22-65 (89)
297 1znf_A 31ST zinc finger from X 21.5 28 0.00096 17.3 0.7 11 18-28 2-12 (27)
298 2pk7_A Uncharacterized protein 21.3 29 0.00098 23.8 0.8 35 13-64 4-38 (69)
299 1paa_A Yeast transcription fac 20.9 37 0.0013 17.3 1.1 11 18-28 3-13 (30)
300 1yc5_A NAD-dependent deacetyla 20.9 77 0.0026 27.6 3.8 50 33-83 125-180 (246)
301 1vdy_A Hypothetical protein (R 20.9 3E+02 0.01 21.5 6.9 40 284-323 50-91 (140)
302 3gae_A Protein DOA1; UFD3, CDC 20.8 4.1E+02 0.014 22.9 9.3 118 102-223 89-216 (253)
303 1wii_A Hypothetical UPF0222 pr 20.7 36 0.0012 24.3 1.3 41 12-63 18-58 (85)
304 2d8y_A Eplin protein; LIM doma 20.7 1.7E+02 0.0057 20.6 5.0 44 13-65 11-55 (91)
305 1lko_A Rubrerythrin all-iron(I 20.6 26 0.00089 29.3 0.6 22 33-61 159-180 (191)
306 2dmd_A Zinc finger protein 64, 20.3 1.7E+02 0.0059 20.0 5.1 14 16-29 7-20 (96)
307 2m0f_A Zinc finger and BTB dom 20.0 25 0.00084 17.8 0.2 11 18-28 3-13 (29)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=8.7e-35 Score=278.91 Aligned_cols=272 Identities=14% Similarity=0.102 Sum_probs=238.1
Q ss_pred hhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccc----cccCCChhHHHHHHHHHhcCCCChhHHHhhccc-C
Q 014817 120 SRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN----VKTASSPELAHESLALLVMFPLTETECMEIASD-A 194 (418)
Q Consensus 120 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~ 194 (418)
....|+++|.+++.+ +++|+.|++.|+++.|+.+|..+.. .....++++++.|+++|.+|+.+++++|..+.. .
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 456899999999875 8999999999999999999963210 000014679999999999999888678888864 5
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--chhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR--SQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~--~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
|+|+.|+++|+++++++++.|+++|+|| +. ++++|..|.. .|+|++|+++| +++ ++.+++.|+++|+||+.
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nL---s~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNL---SWRADVNSKKTLRE-VGSVKALMECALEVK--KESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHH---HTTCCHHHHHHHHH-TTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHH---hccCCHHHHHHHHH-CCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence 6699999999999999999999999999 44 4678999875 79999999986 455 78999999999999998
Q ss_pred -ccccHHHHH-HcCchHHHHHHhcCCCc----ccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 272 -VKQTRYKAV-AAGAAETLVDRLADFDK----CDAERALATVELLCR----IPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 272 -~~~n~~~i~-~~G~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
+++|+..++ +.|++|.|+++|.+++. ++++.++++|++|+. ++++++.+.+ .|+++.|+++|.+++..+
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHH
Confidence 668899988 79999999999987654 388999999999995 8999999988 599999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++.|+++|+||+.++++.++.+.+.|+++.|+.+|+++ ++++|+.|+++|++|..+.+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence 99999999999988999999999999999999999877 99999999999999998744
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=278.86 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=236.8
Q ss_pred HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccc----ccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCc
Q 014817 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINV----KTASSPELAHESLALLVMFPLTETECMEIAS-DADK 196 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~ 196 (418)
..|+++|.+++. ++++|+.|++.|++++|+.+|..+... ....++.+++.|+++|.+|+.+++.++..+. ..|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 489999999965 599999999999999999999532000 0001467899999999999988866787776 4566
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-cc
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMR--SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-VK 273 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-~~ 273 (418)
|+.|+++|++++.++++.|+++|+|| +. ++++|..|.. .|+|++|+++|.... ++.+++.|+.+|+||+. ++
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nL---s~~~~~~~k~~I~~-~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNL---SWRADVNSKKTLRE-VGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHH---TSSCCHHHHHHHHH-TTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH---hcCCCHHHHHHHHH-cCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCH
Confidence 99999999999999999999999999 55 4678888875 799999999865432 78999999999999998 67
Q ss_pred ccHHHHH-HcCchHHHHHHhcCCCcc----cHHHHHHHHHHHh----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817 274 QTRYKAV-AAGAAETLVDRLADFDKC----DAERALATVELLC----RIPAGCAEFAEHALTVPLLVKTILKISDRATEY 344 (418)
Q Consensus 274 ~n~~~i~-~~G~v~~Lv~lL~~~~~~----~~~~a~~~L~~L~----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~ 344 (418)
+|+..++ +.|+++.|+++|.+++.. +++.++++|++|+ .++++++.+.+ +|+++.|+++|.+++..++++
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHH
Confidence 8999998 799999999999876543 8999999999999 48999999998 499999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC
Q 014817 345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ 401 (418)
Q Consensus 345 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 401 (418)
|+++|+||+.++++.+..+++.|+++.|+.+|+++ ++++++.|+++|++|..+.+.
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHh
Confidence 99999999988999999999999999999999877 999999999999999987543
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4e-32 Score=270.85 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=237.4
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
+++.+++.|++++.+ .+..|+..|++++..++.++..+++.|++|.|+++|.++ ++++++.|+++|.+|+.
T Consensus 3 ~l~~lv~~L~s~~~~--~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEK--YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRNLVF 73 (457)
T ss_dssp CHHHHHHHHHSSCTH--HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhc
Confidence 478999999988654 468999999999988888898999999999999999976 68999999999999998
Q ss_pred ChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh--------cCC
Q 014817 183 TETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK--------NLS 253 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~--------~~~ 253 (418)
+++++|..|++.|+|+.|+++|+ +++.++++.++++|+|| +.++++|..+.. |++++|+++|. +..
T Consensus 74 ~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL---a~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL---SSTDELKEELIA--DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH---HTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC----
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH---hcCHHhHHHHHh--ccHHHHHHHHhccccccccCcc
Confidence 75689999999999999999999 88999999999999999 666888988864 99999999993 220
Q ss_pred ------CChhhhHHHHHHHHHHccccccHHHHHHc-CchHHHHHHhcC------CCcccHHHHHHHHHHHhcCH------
Q 014817 254 ------SYPRGLKVGIKALFALCLVKQTRYKAVAA-GAAETLVDRLAD------FDKCDAERALATVELLCRIP------ 314 (418)
Q Consensus 254 ------~~~~~~~~a~~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~------ 314 (418)
.++.+.+.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+++.++.+|.+|+...
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~ 228 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred chhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcc
Confidence 14567779999999999988899999998 999999999985 45678999999999997321
Q ss_pred ---------------------------------------------hHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHH
Q 014817 315 ---------------------------------------------AGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGA 348 (418)
Q Consensus 315 ---------------------------------------------~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~ 348 (418)
.+.+.+.. .|+++.|+.+|.+ .++.+++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~a 307 (457)
T 1xm9_A 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGA 307 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHH
Confidence 11122333 4778999999977 578999999999
Q ss_pred HHHHhcCCHH----H-HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 349 LAALCSASER----C-QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 349 L~~l~~~~~~----~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
|+|||.++.. . +..+.++|+++.|+.+|.++ ++++++.|+++|++|+...+
T Consensus 308 L~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGG
T ss_pred HHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHH
Confidence 9999985432 2 23344689999999999887 99999999999999988543
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=2.5e-31 Score=268.07 Aligned_cols=285 Identities=13% Similarity=0.113 Sum_probs=237.6
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
....++.||+.|.+++. ..+..|+.+|++++..++.+|..+++.|+||.|+++|.++ +.++++.|+++|.+
T Consensus 46 ~~~~i~~LV~~L~s~~~--~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL~n 116 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLD--AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGALKN 116 (584)
T ss_dssp CCCCHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHHHH
Confidence 34579999999998754 3468899999999999999999999999999999999887 68999999999999
Q ss_pred CCCC-hhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc------
Q 014817 180 FPLT-ETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN------ 251 (418)
Q Consensus 180 l~~~-~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~------ 251 (418)
|+.+ +.++|..|++.|+|+.|+++|++ .+.++++.++++|++| +.++++|..|+. |+|++|++++..
T Consensus 117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL---S~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 117 ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL---SSHDSIKMEIVD--HALHALTDEVIIPHSGWE 191 (584)
T ss_dssp HTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH---TTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC
T ss_pred HHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH---hCCchhhHHHHh--ccHHHHHHHHhccccccc
Confidence 9985 45899999999999999999997 5789999999999999 788999999973 579999998720
Q ss_pred ----------CCCChhhhHHHHHHHHHHccccc-cHHHHHHc-CchHHHHHHhcC------CCcccHHHHHHHHHHHhcC
Q 014817 252 ----------LSSYPRGLKVGIKALFALCLVKQ-TRYKAVAA-GAAETLVDRLAD------FDKCDAERALATVELLCRI 313 (418)
Q Consensus 252 ----------~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~-G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~ 313 (418)
...++.++++|+++|+||+..++ +|..+++. |+++.|+.+|.+ .+...++.|+++|+||+..
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 11157899999999999998875 58989885 667899999974 3567889999999999965
Q ss_pred HhHH--------------------------HHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCC----HHHHHH
Q 014817 314 PAGC--------------------------AEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSAS----ERCQRD 362 (418)
Q Consensus 314 ~~~~--------------------------~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~----~~~~~~ 362 (418)
-+.. +.+.. .++++.|+.+|.. .++.+++.|+++|+|||.++ ...+..
T Consensus 272 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 272 VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp HHHHSTTCCC--------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred ccccccchhhhhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 3211 11111 2456778888865 68999999999999999855 234455
Q ss_pred HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 363 AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 363 ~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
+.++|+++.|+.+|.++ ++.+++.|+++|++|+...+
T Consensus 351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCS
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChh
Confidence 56789999999999887 99999999999999998754
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=7.1e-31 Score=259.11 Aligned_cols=290 Identities=14% Similarity=0.101 Sum_probs=241.0
Q ss_pred HHHHHHHHHhhcCCC----------chhhhHHHHHHHHHhhhcChhhhhHHhhcChH----------HHHHHHhhccc--
Q 014817 102 SLVRTLLNQASSESN----------TYGSRLSALRRLRGLARDSDKNRSLISSHNVR----------AILSQVFFTNI-- 159 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~----------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i----------~~Lv~lL~~~~-- 159 (418)
+-++.||+.|+..+. +.+.+.+|+++|.+++...++..+..++.|++ +.+++++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 457889999986432 23568999999999999888888877888888 66777776542
Q ss_pred -c-cccC---CChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-----------CCHHHHHHHHHHHHHHH
Q 014817 160 -N-VKTA---SSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-----------SSIEVRVNSAALIEIVL 223 (418)
Q Consensus 160 -~-~~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~ 223 (418)
+ .+.+ .-...+.+|+++|.|++.+. ++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 0 0000 00112349999999998875 899999999999999999952 24778999999999994
Q ss_pred hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHh-cCCCcccH
Q 014817 224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRL-ADFDKCDA 300 (418)
Q Consensus 224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~ 300 (418)
..++.++..+....|+|++|+.+|+++ ++++++.|+++|+||+.. ++++..+++.|+||.|+++| .+++..++
T Consensus 229 --~~~~~~k~~i~~~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 229 --FGDVANKATLCSMKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp --TTCHHHHHHHHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred --CCCcccHHHHHHcCCcHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 344557777754467799999999988 899999999999999985 46899999999999999986 45677899
Q ss_pred HHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCCh----HHHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHH
Q 014817 301 ERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISD----RATEYAAGALAALCS---ASERCQRDAVSAGVLTQL 372 (418)
Q Consensus 301 ~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~----~~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L 372 (418)
+.++.+|.+|+. +++++..++..+|+++.|+++|.+.++ .+++.|+++|+||+. ++++.++.+.+.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 999999999998 889999998557999999999987554 489999999999996 789999999999999999
Q ss_pred HHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 373 LLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 373 ~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
+.+|.++ +..+++.|+++|.+|+.
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHc
Confidence 9999877 99999999999999984
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=4.2e-30 Score=267.34 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=245.7
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-----------------------------hhh---hHHhhcChH
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-----------------------------KNR---SLISSHNVR 148 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i 148 (418)
.+.++.||+.|++++.. .+..|++.|.+++...+ .++ +.+++.|++
T Consensus 420 ~g~Ip~LV~LL~s~d~~--i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 420 KASIHALMDLARGGNQS--CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HHHHHHHHHHHHTTCGG--GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cchHHHHHHHhCCCChH--HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 46789999999986543 45899999999997542 233 678899999
Q ss_pred HHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc
Q 014817 149 AILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS 228 (418)
Q Consensus 149 ~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~ 228 (418)
|.|+.+|.++ ++.+++.|+++|.|++.+. ++|..+++.|++++|+.+|++++...++.|+++|.+|+ .+
T Consensus 498 p~LV~LL~s~-------s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~---~~ 566 (810)
T 3now_A 498 TALCALAKTE-------SHNSQELIARVLNAVCGLK-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG---IT 566 (810)
T ss_dssp HHHHHHHTCC-------CHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh---cC
Confidence 9999999987 6899999999999999765 79999999999999999999999999999999999994 43
Q ss_pred hhhhhHhhc--hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817 229 QELRAQISN--LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALA 305 (418)
Q Consensus 229 ~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~ 305 (418)
.+....+.. ..|++++|+.+|.++. +...+..|+++|.||+.. ++++..++++|+++.|+.+|.+++..+++.|++
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 332333321 2479999999998652 345567899999999987 478999999999999999999999999999999
Q ss_pred HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh-cChHHHHHHHHhhCCCHHH
Q 014817 306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS-AGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~ 384 (418)
+|.||+.+++.+..+.+..|+++.|+.++...+..+++.|+++|.+|+.+++...+.+++ .|+++.|+.+|.++ +..+
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~v 724 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAV 724 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHH
Confidence 999999999999988864589999999999999999999999999999988888888898 89999999999877 9999
Q ss_pred HHHHHHHHHHHHhh
Q 014817 385 KRKAQLLLKLLRDS 398 (418)
Q Consensus 385 ~~~A~~~L~~l~~~ 398 (418)
|+.|+++|.|+...
T Consensus 725 q~~A~~aL~NL~~~ 738 (810)
T 3now_A 725 QHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=7.1e-30 Score=258.24 Aligned_cols=284 Identities=10% Similarity=0.105 Sum_probs=250.4
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
+.+.|+.||+.|+.++.+ ..+..|+++|.++++.+++++..+++.|++|.|+.+|.++ +.++++.|+++|++
T Consensus 98 ~~G~ip~LV~lL~~~~~~-~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-------~~~v~e~A~~aL~n 169 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCS-PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGN 169 (510)
T ss_dssp HTTHHHHHHHHTTCTTCH-HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 356789999999866433 3468999999999999999999999999999999999887 68999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS 254 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 254 (418)
|+.+.+++|..+.+.|++++|+.+|.+.+ ...+..++++|.++ +.+......+....|+++.|+.+|.+.
T Consensus 170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl---~~~~~~~~~~~~~~~~lp~L~~LL~~~-- 244 (510)
T 3ul1_B 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQILPTLVRLLHHN-- 244 (510)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH---HCCCSSCCCHHHHHHHHHHHHHHTTCS--
T ss_pred HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH---hhcccchhHHHHHHhHHHHHHHHHhcC--
Confidence 99887788999999999999999998654 56788999999999 565555555444468999999999998
Q ss_pred ChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHH
Q 014817 255 YPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVK 332 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ 332 (418)
+++++..|+++|.+|+....+ ...+++.|+++.|+.+|.+++..++..++.+|.+|+. ++..+..+.+ .|+++.|+.
T Consensus 245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~ 323 (510)
T 3ul1_B 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPS 323 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-
T ss_pred CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHH
Confidence 899999999999999987654 4556789999999999999999999999999999985 5667777777 599999999
Q ss_pred HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 333 TILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 333 ~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+|.+.+..+++.|+++|.||+.+++..+..+.+.|+++.|+.++.++ +..+|+.|+++|.|++..
T Consensus 324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999877 999999999999999875
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=2.8e-29 Score=255.08 Aligned_cols=284 Identities=10% Similarity=0.103 Sum_probs=251.5
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
+.+.|+.||+.|+.++.+ ..+..|+++|.+++..++.++..+++.|++|.|+.+|.++ +.++++.|+++|++
T Consensus 117 ~~G~ip~Lv~lL~~~~~~-~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-------~~~v~e~A~~aL~n 188 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCS-PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGN 188 (529)
T ss_dssp HTTHHHHHHHHHTCTTCH-HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 346789999999866533 3468899999999999999999999999999999999888 58999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS 254 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 254 (418)
|+.+.+++|..+.+.|++++|+.+|...+ ...+..++++|.++ +.+......+....|+++.|+.+|.++
T Consensus 189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl---~~~~~~~~~~~~~~~~lp~L~~LL~~~-- 263 (529)
T 3tpo_A 189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQILPTLVRLLHHN-- 263 (529)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH---HCCCTTCCCHHHHHHHHHHHHHHTTSS--
T ss_pred HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH---HhcccchhhHHHHhhHHHHHHHHhcCC--
Confidence 99887789999999999999999997653 56788999999999 666555554444468999999999998
Q ss_pred ChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHH
Q 014817 255 YPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVK 332 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~ 332 (418)
+++++..|+++|.+|+...+ ....+++.|+++.|+.+|.+++..++..++.+|.+|+. +++.+..+.. .|+++.|+.
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~ 342 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPS 342 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHH
Confidence 89999999999999998765 45556789999999999999999999999999999985 5667777777 599999999
Q ss_pred HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 333 TILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 333 ~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+|.+.+..+++.|+++|.||+.+++..+..+.+.|+++.|+.++.++ +..+|+.|+++|.|+...
T Consensus 343 LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 343 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999887 999999999999999875
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=7.6e-30 Score=254.40 Aligned_cols=284 Identities=16% Similarity=0.135 Sum_probs=238.5
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh-cccccccCCChhHHHHHHHHHhc
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF-TNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
.+.++.||+.|++++.+ .+..|+++|++++..++.+|..+++.|++|.|+++|. ++ ++++++.|+++|.+
T Consensus 43 ~g~i~~Lv~lL~s~~~~--~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~-------~~~~~~~a~~aL~n 113 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQN--VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-------NAEIQKQLTGLLWN 113 (457)
T ss_dssp TTHHHHHHHHTTSSCHH--HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC-------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC-------CHHHHHHHHHHHHH
Confidence 46789999999976543 4689999999999988999999999999999999998 54 58999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhc--------CC--------CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817 180 FPLTETECMEIASDADKITSLSSLLF--------HS--------SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~--------~~--------~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~ 243 (418)
|+.++ ++|..+++ |+++.|+++|. ++ +.+++..|+++|+|| +.+++++..+....|+++
T Consensus 114 La~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL---s~~~~~~~~i~~~~g~i~ 188 (457)
T 1xm9_A 114 LSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL---SSADAGRQTMRNYSGLID 188 (457)
T ss_dssp HHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH---TTSHHHHHHHTTSTTHHH
T ss_pred HhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH---ccCHHHHHHHHHcCCCHH
Confidence 99885 78998999 99999999993 32 355666999999999 666888888876339999
Q ss_pred HHHHHhhcC------C----------------------------------------------------------------
Q 014817 244 GVIDILKNL------S---------------------------------------------------------------- 253 (418)
Q Consensus 244 ~Lv~lL~~~------~---------------------------------------------------------------- 253 (418)
+|+.+|+++ .
T Consensus 189 ~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
T 1xm9_A 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268 (457)
T ss_dssp HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccc
Confidence 999888741 0
Q ss_pred ---------------------------CChhhhHHHHHHHHHHccccccH-----HHHH-HcCchHHHHHHhcCCCcccH
Q 014817 254 ---------------------------SYPRGLKVGIKALFALCLVKQTR-----YKAV-AAGAAETLVDRLADFDKCDA 300 (418)
Q Consensus 254 ---------------------------~~~~~~~~a~~aL~~L~~~~~n~-----~~i~-~~G~v~~Lv~lL~~~~~~~~ 300 (418)
.++.+++.|+|+|+||+..+... ..++ ++|++|.|+++|.+++.+++
T Consensus 269 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~ 348 (457)
T 1xm9_A 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348 (457)
T ss_dssp CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHH
T ss_pred cccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHH
Confidence 02456667899999999765321 2334 68999999999999999999
Q ss_pred HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC------hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHH
Q 014817 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS------DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLL 374 (418)
Q Consensus 301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~------~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 374 (418)
..|+++|.+|+.+++.+..+.. |+++.|+++|...+ ..+...++++|.++..++++....+.+.|++++|+.
T Consensus 349 ~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 349 RSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 9999999999998888877764 78999999998754 357789999999999988899999999999999999
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 375 LVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 375 ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++.++.+++++++|.++|.++-.+.+
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99766589999999999998877655
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=4.5e-30 Score=258.93 Aligned_cols=284 Identities=15% Similarity=0.144 Sum_probs=233.9
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
.+.|+.||+.|++++.+ .+..|+++|++++.. ++.+|..|++.|+||.|+++|.+.. +.++++.|+.+|.+
T Consensus 89 ~G~Ip~LV~LL~s~~~~--vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~------~~~~~e~aa~aL~n 160 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKE--VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR------DMDLTEVITGTLWN 160 (584)
T ss_dssp TTHHHHHHHGGGCSSHH--HHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC------SHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC------CHHHHHHHHHHHHH
Confidence 35789999999987543 468999999999985 6899999999999999999998753 57899999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhc------------------CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh
Q 014817 180 FPLTETECMEIASDADKITSLSSLLF------------------HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI 241 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~------------------~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~ 241 (418)
|+..+ ++|..|++ ++|+.|+++|. ..+.+++++|+++|+||+ +.++++|..|....|+
T Consensus 161 LS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs--~~~~~~R~~i~~~~Gl 236 (584)
T 3l6x_A 161 LSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVS--SERSEARRKLRECDGL 236 (584)
T ss_dssp HTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHT--SSCHHHHHHHHHSTTH
T ss_pred HhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHh--cCCHHHHHHHHHcCCc
Confidence 99876 88988885 57999999872 225799999999999994 3445668887765677
Q ss_pred HHHHHHHhhcC-----C---------------------------------------------------------------
Q 014817 242 FEGVIDILKNL-----S--------------------------------------------------------------- 253 (418)
Q Consensus 242 i~~Lv~lL~~~-----~--------------------------------------------------------------- 253 (418)
+++|+.+|++. .
T Consensus 237 i~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~L 316 (584)
T 3l6x_A 237 VDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316 (584)
T ss_dssp HHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHH
Confidence 77777776531 0
Q ss_pred ----CChhhhHHHHHHHHHHcccc-----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc
Q 014817 254 ----SYPRGLKVGIKALFALCLVK-----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA 324 (418)
Q Consensus 254 ----~~~~~~~~a~~aL~~L~~~~-----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 324 (418)
.++.++++|++||+||+.+. .++..+.+.|++|.|+.+|.+++..+++.++++|.+|+.++.++..| . .
T Consensus 317 L~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~ 394 (584)
T 3l6x_A 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-K 394 (584)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-H
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-h
Confidence 03455667777777776543 23334445799999999999999999999999999999988888777 4 3
Q ss_pred CChHHHHHHHhcC--------ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-CCHHHHHHHHHHHHHH
Q 014817 325 LTVPLLVKTILKI--------SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-CTDRAKRKAQLLLKLL 395 (418)
Q Consensus 325 g~i~~Lv~~l~~~--------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l 395 (418)
|+++.||++|.++ +..+...|+++|.||+.++++.++.+.+.|++++|+.++.++ .++++++.|+++|.+|
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 8999999999875 457788999999999998999999999999999999999764 4789999999999999
Q ss_pred Hhh
Q 014817 396 RDS 398 (418)
Q Consensus 396 ~~~ 398 (418)
..+
T Consensus 475 ~~~ 477 (584)
T 3l6x_A 475 WGY 477 (584)
T ss_dssp HTS
T ss_pred HcC
Confidence 753
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=5.8e-30 Score=258.88 Aligned_cols=285 Identities=15% Similarity=0.102 Sum_probs=244.8
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
..++.+|+.+++++. +.+..|+..+|++.+. .....+.+++.|+||.|+++|...+ +++++..|+++|.||
T Consensus 57 ~~i~~~v~~l~s~d~--~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~------~~~lq~~Aa~aL~ni 128 (510)
T 3ul1_B 57 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTNI 128 (510)
T ss_dssp CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT------CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHH
Confidence 458999999999854 4568999999987653 3344678999999999999998764 689999999999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC---Chh
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS---YPR 257 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~ 257 (418)
+.++++++..+++.|+|+.|+.+|++++.++++.|+++|+||+ ...++.+..+.. .|++++|+.+|..... ...
T Consensus 129 as~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa--~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHH
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHH
Confidence 8877789999999999999999999999999999999999994 445677777755 7999999999987521 234
Q ss_pred hhHHHHHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817 258 GLKVGIKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
.+..++++|.+++.+..+...+ ...|++|.|+.+|.+.+.+++..++++|.+|+..+..+..++...|+++.|+++|.+
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 6788999999999887654444 447899999999999999999999999999998766555554446999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+..++..|+++|.+|+.+++..+..+++.|+++.|+.+|.++ ++.+|+.|+++|.+|+..
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAG 346 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTS
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998999999999999999999999777 999999999999999864
No 12
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.8e-29 Score=240.68 Aligned_cols=246 Identities=14% Similarity=0.066 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhcC---------CCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHH
Q 014817 102 SLVRTLLNQASSE---------SNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAH 171 (418)
Q Consensus 102 ~~i~~lv~~L~~~---------~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~ 171 (418)
+.++.|++.|.+. ..+...+..|++.|.+++..++.+|..+.. .|+||.|+++|.++ ++++++
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~ 145 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQ 145 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-------CHHHHH
Confidence 5678888888531 011234689999999999988889988865 45699999999876 589999
Q ss_pred HHHHHHhcCCCC-hhHHHhhcccCCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhccc-chhhhhHhhchhhhHHHHHHH
Q 014817 172 ESLALLVMFPLT-ETECMEIASDADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMR-SQELRAQISNLDEIFEGVIDI 248 (418)
Q Consensus 172 ~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~-~~~~~~~i~~~~g~i~~Lv~l 248 (418)
.|+++|++|+.. ++++|..+++.|+|+.|+++| ++++.++++.|+++|+|| +. .++++..|+...|+|+.|+++
T Consensus 146 ~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL---s~~~~~nk~~i~~~~Gai~~Lv~l 222 (354)
T 3nmw_A 146 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL---SAHCTENKADICAVDGALAFLVGT 222 (354)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH---HccChhhhHHHHHhcCcHHHHHHH
Confidence 999999999985 457899999999999999975 667899999999999999 55 778888887447999999999
Q ss_pred hhcCCCCh---hhhHHHHHHHHHHcc----ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHH
Q 014817 249 LKNLSSYP---RGLKVGIKALFALCL----VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEF 320 (418)
Q Consensus 249 L~~~~~~~---~~~~~a~~aL~~L~~----~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i 320 (418)
|.++. +. ++++.|+++|+||+. +++++..++++|+++.|+++|.+++..+++.|+++|.+|+ .++++++.+
T Consensus 223 L~~~~-~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 301 (354)
T 3nmw_A 223 LTYRS-QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301 (354)
T ss_dssp TTCCC-SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hccCC-CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99773 22 589999999999996 7789999999999999999999999999999999999999 578999999
Q ss_pred HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 014817 321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC 359 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~ 359 (418)
.+ .|+++.|++++.+++..+++.|+++|.||+.+++..
T Consensus 302 ~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 302 WD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 98 599999999999999999999999999999965553
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=1.1e-28 Score=250.76 Aligned_cols=284 Identities=15% Similarity=0.109 Sum_probs=245.2
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
.++.+++.+.+.+. +.+..|+..++++.+ +.....+.+++.|++|.|+++|...+ +++++..|+++|.+++
T Consensus 77 ~l~~lv~~l~s~d~--~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~------~~~~q~~Aa~aL~nia 148 (529)
T 3tpo_A 77 SVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTNIA 148 (529)
T ss_dssp CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC------CHHHHHHHHHHHHHHH
Confidence 57899999998754 346899999998764 34445678999999999999998764 6899999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC---Chhh
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS---YPRG 258 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~ 258 (418)
.+..+.+..+++.|+|+.|+.+|.+++.++++.|+++|+||+ ..+++++..+.. .|++++|+.+|..... ....
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa--~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--ccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHH
Confidence 887788899999999999999999999999999999999995 456778888865 7999999999986521 2346
Q ss_pred hHHHHHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817 259 LKVGIKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~ 337 (418)
...++++|.+++.+..+...+ ...|++|.|+.+|.+++..++..++++|.+|+..+..+..++...|+++.|+++|.+.
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 788999999999887654443 4478999999999999999999999999999977655555444469999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+..++..|+.+|.||+.+++.....+.+.|+++.|+.+|.++ ++.+|+.|+++|.+|+..
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAG 365 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTS
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcc
Confidence 999999999999999998999999999999999999999877 999999999999999875
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=2.2e-28 Score=254.42 Aligned_cols=283 Identities=14% Similarity=0.067 Sum_probs=245.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|+..|++++++ .+..|+++|.+++. ++.+|..+++.|++|+|+.+|.++ +...++.|+++|.+|+
T Consensus 495 GaVp~LV~LL~s~s~~--vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 495 GITTALCALAKTESHN--SQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-------TEKGKRHATQALARIG 564 (810)
T ss_dssp THHHHHHHHHTCCCHH--HHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-------CHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCHH--HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-------CHHHHHHHHHHHHHHh
Confidence 4578899999887543 46899999999985 577999999999999999999877 4788999999999987
Q ss_pred CChhHHHhhcc---cCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817 182 LTETECMEIAS---DADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR 257 (418)
Q Consensus 182 ~~~~~~~~~i~---~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 257 (418)
.+.+. ...+. ..|++++|+.+|.++ +...+..|+++|.||+ +..++++..|.. .|+++.|+.+|.++ ++.
T Consensus 565 ~~~~p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa--~~~d~~~~~Ii~-aG~l~~Lv~LL~s~--~~~ 638 (810)
T 3now_A 565 ITINP-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA--SMNESVRQRIIK-EQGVSKIEYYLMED--HLY 638 (810)
T ss_dssp HHSCH-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT--TSCHHHHHHHHH-TTHHHHHHHHHHSC--CTT
T ss_pred cCCCh-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh--cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHH
Confidence 64312 22221 146999999999876 4555678999999995 445788888876 78999999999998 899
Q ss_pred hhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHh
Q 014817 258 GLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTIL 335 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~ 335 (418)
+++.|+++|.||+.+++.+..+++ .|+++.|+.++.+.+..+++.|+++|.+|+. ++...+.+++.+|+++.|+.++.
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence 999999999999999999888886 7999999999999899999999999999998 78888888884599999999999
Q ss_pred cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC--CCHHHHHHHHHHHHHHHhhCC
Q 014817 336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD--CTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~l~~~~~ 400 (418)
+++..++..|+++|.|++.++++....+.+.|++++|..+++.. .+.++.+.|..+|.++-.+..
T Consensus 719 s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 719 NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988889999999999999999999643 478999999999999998754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.2e-27 Score=218.70 Aligned_cols=241 Identities=20% Similarity=0.179 Sum_probs=221.5
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
|+++.|+++|.++ +++++..|+.+|.+++....+++..+.+.|+++.|+++|++++.+++..++++|.++
T Consensus 2 ~~i~~L~~~L~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l--- 71 (252)
T 4hxt_A 2 NDVEKLVKLLTST-------DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI--- 71 (252)
T ss_dssp CHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 6899999999887 589999999999999887767899999999999999999999999999999999999
Q ss_pred ccc-hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHc-cccccHHHHHHcCchHHHHHHhcCCCcccHHHH
Q 014817 226 MRS-QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALC-LVKQTRYKAVAAGAAETLVDRLADFDKCDAERA 303 (418)
Q Consensus 226 s~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~-~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a 303 (418)
+.. ++++..+.. .|+++.|+.+|+++ ++.++..|+++|.+|+ .+++++..+++.|+++.|+++|.+++..++..+
T Consensus 72 ~~~~~~~~~~~~~-~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a 148 (252)
T 4hxt_A 72 ASGPDEAIKAIVD-AGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 148 (252)
T ss_dssp TTSCHHHHHHHHH-TTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HcCChHHHHHHHH-CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 555 888888865 79999999999988 8999999999999999 566789999999999999999999999999999
Q ss_pred HHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCH
Q 014817 304 LATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTD 382 (418)
Q Consensus 304 ~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 382 (418)
+++|.+|+. .++.+..+.+ .|+++.|++++.+.++.++..|+++|.+++.+++..++.+.+.|+++.|+.+++++ ++
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~ 226 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DS 226 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cH
Confidence 999999997 4556677777 59999999999999999999999999999998899999999999999999999877 99
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 014817 383 RAKRKAQLLLKLLRDSWPQ 401 (418)
Q Consensus 383 ~~~~~A~~~L~~l~~~~~~ 401 (418)
.+++.|.++|.+|..+...
T Consensus 227 ~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 9999999999999998763
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1.2e-27 Score=242.92 Aligned_cols=285 Identities=16% Similarity=0.099 Sum_probs=248.7
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
...++.+++.|.+++ ...+..|+..|+.+++... .+...+++.|++|.|+.+|.+++ ++.++..|+++|.+
T Consensus 73 ~~~l~~lv~~L~s~~--~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~~v~~~A~~~L~~ 144 (528)
T 4b8j_A 73 LESLPAMIGGVYSDD--NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED------FPQLQFEAAWALTN 144 (528)
T ss_dssp --CHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHH
Confidence 356899999998774 3456899999999976554 67788999999999999998773 48999999999999
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
++.+..+++..+++.|+++.|+.+|.+++.+++..|+++|.+|+ ...+.++..+.. .|++++|+.+|.... ++.++
T Consensus 145 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~~~i~~-~g~l~~Ll~lL~~~~-~~~v~ 220 (528)
T 4b8j_A 145 IASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA--GDSPKCRDLVLA-NGALLPLLAQLNEHT-KLSML 220 (528)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--HTCHHHHHHHHH-TTCHHHHHHTCCTTC-CHHHH
T ss_pred HhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh--CCChhhHHHHHH-CCcHHHHHHHHhcCC-CHHHH
Confidence 99886688999999999999999999999999999999999995 445667777765 689999999995433 89999
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH-HHHHhccCChHHHHHHHhcCC
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGC-AEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
..|+++|.+|+....+.......|+++.|+.+|.+.+..++..++++|.+|+.....+ +.+.. .|+++.|+.+|.+.+
T Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCC
Confidence 9999999999988766666677999999999999999999999999999999766555 45566 599999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..++..|+++|.+|+.+++...+.+.+.|+++.|+.+|.++.++.+++.|+++|.+|+..
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999999999999999988999999999999999999997665899999999999999863
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=6.8e-27 Score=237.41 Aligned_cols=281 Identities=14% Similarity=0.146 Sum_probs=249.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|++++. ...+..|+++|.+++..++.++..+++.|+++.|+.+|.++ +.++++.|+++|.+|+
T Consensus 117 g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 117 GVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-------SDDVREQAVWALGNVA 188 (528)
T ss_dssp TCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-------CHHHHHHHHHHHHHHh
Confidence 458899999987642 33468999999999998899999999999999999999886 5899999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 182 LTETECMEIASDADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.+...++..+...|+++.|+.+| .+.+..++..++++|.+| +........... .|+++.|+.+|.+. ++.++.
T Consensus 189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L---~~~~~~~~~~~~-~~~l~~L~~lL~~~--~~~v~~ 262 (528)
T 4b8j_A 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF---CRGKPQPSFEQT-RPALPALARLIHSN--DEEVLT 262 (528)
T ss_dssp HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH---HCSSSCCCHHHH-TTHHHHHHHHTTCC--CHHHHH
T ss_pred CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH---HcCCCCCcHHHH-HHHHHHHHHHHCCC--CHHHHH
Confidence 77667899999999999999999 667899999999999999 444333333333 68999999999988 899999
Q ss_pred HHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC-
Q 014817 261 VGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI- 337 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~- 337 (418)
.|+++|.+|+...+++ ..+++.|+++.|+.+|.+++..++..|+++|.+|+. .+..++.+.. .|+++.|+.+|.+.
T Consensus 263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCC
Confidence 9999999999876654 567889999999999999889999999999999996 5667777777 59999999999998
Q ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+..++..|+++|.||+.++++....+++.|+++.|+.+|.++ ++.+++.|+++|.++...
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 999999999999999998888888999999999999999888 999999999999999987
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.7e-27 Score=216.86 Aligned_cols=239 Identities=15% Similarity=0.152 Sum_probs=214.8
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
...+.++..|.++ +++++..|+.+|.++....++++..+.+.|+++.|+++|++++++++..|+++|.+++
T Consensus 12 ~~~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-- 82 (252)
T 4db8_A 12 SELPQMTQQLNSD-------DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-- 82 (252)
T ss_dssp CSHHHHHHHHHSS-------CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT--
T ss_pred chHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh--
Confidence 4588899999888 5789999999997654445578889999999999999999999999999999999994
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
..+++++..+.. .|+++.|+.+|+++ ++.++..|+++|.||+.+.+++ ..+++.|+++.|+++|.+++..++..++
T Consensus 83 ~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 159 (252)
T 4db8_A 83 SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (252)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 347888888865 79999999999998 8999999999999999999888 8889999999999999998999999999
Q ss_pred HHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH
Q 014817 305 ATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR 383 (418)
Q Consensus 305 ~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 383 (418)
++|.+|+. .++.+..+.+ .|+++.|++++.++++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.+++++ ++.
T Consensus 160 ~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~ 237 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEK 237 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSH
T ss_pred HHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHH
Confidence 99999997 4566777777 59999999999999999999999999999988899999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHhh
Q 014817 384 AKRKAQLLLKLLRDS 398 (418)
Q Consensus 384 ~~~~A~~~L~~l~~~ 398 (418)
+|+.|+++|.+|+.+
T Consensus 238 v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 238 IQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHTHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=9.1e-27 Score=213.35 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=212.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
...+.+++.|++++.+ .+..|++.|+++...++.++..+++.|+++.|+++|.+. +++++..|+++|.+++
T Consensus 12 ~~~~~~~~~L~s~~~~--~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~ 82 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ--EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIA 82 (252)
T ss_dssp CSHHHHHHHHHSSCSS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 3478899999998655 458999999887776788899999999999999999887 5899999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhh-hHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.+.++++..+.+.|+++.|+.+|++++++++..|+++|.+| +.+++.+ ..+.. .|+++.|+.+|+++ ++.++.
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~-~~~i~~L~~lL~~~--~~~v~~ 156 (252)
T 4db8_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI---ASGGNEQIQAVID-AGALPALVQLLSSP--NEQILQ 156 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH---TTSCHHHHHHHHH-TTHHHHHHHGGGCS--CHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh---hcCCchHHHHHHH-CCCHHHHHHHHhCC--CHHHHH
Confidence 87668999999999999999999999999999999999999 7777777 66654 79999999999988 899999
Q ss_pred HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817 261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
.|+++|.+|+... +++..+++.|+++.|+++|.+++..+++.++++|.+|+ .+++.+..+.+ .|+++.|++++.+++
T Consensus 157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCC
Confidence 9999999999754 57778889999999999999989999999999999999 46777888887 599999999999999
Q ss_pred hHHHHHHHHHHHHHhc
Q 014817 339 DRATEYAAGALAALCS 354 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~ 354 (418)
+.+++.|+++|.+|+.
T Consensus 236 ~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 236 EKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.6e-26 Score=209.68 Aligned_cols=238 Identities=19% Similarity=0.167 Sum_probs=216.2
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.++.|++.|++++ ...+..|++.|.+++..++.++..+++.|+++.|+++|.++ +.+++..|+++|.+++.
T Consensus 3 ~i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 3 DVEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHc
Confidence 5889999999875 34568999999999999888999999999999999999887 58999999999999999
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
+.++++..+.+.|+++.|+.+|++++++++..++++|.+|+ ..+++++..+.. .|+++.|+++++++ ++.++..|
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~-~~~i~~L~~~l~~~--~~~~~~~a 148 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA--SGPDEAIKAIVD-AGGVEVLVKLLTST--DSEVQKEA 148 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT--TSCHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHH-CCCHHHHHHHHcCC--CHHHHHHH
Confidence 86689999999999999999999999999999999999993 267788888866 79999999999988 89999999
Q ss_pred HHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817 263 IKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 263 ~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
+++|.+|+... +++..+++.|+++.|+.+|.+++..++..++++|.+|+. +++.+..+.+ .|+++.|++++.++++.
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHH
Confidence 99999999865 466888999999999999999899999999999999997 6677778887 59999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 014817 341 ATEYAAGALAALCSA 355 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~ 355 (418)
+++.|+++|.+|+..
T Consensus 228 v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 228 VQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999973
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=6.7e-26 Score=230.29 Aligned_cols=282 Identities=11% Similarity=0.092 Sum_probs=248.2
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|.+++ +...+..|++.|.+++..++.++..+++.|+++.|+.+|.++ ++++++.|+++|.+++
T Consensus 130 g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 130 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNVA 201 (530)
T ss_dssp TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 45788999998762 223468899999999998888999999999999999999876 6899999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.+.++++..+...|+++.|+.+|.+.+.+++..++++|.+| +... ........ .|+++.|+.+|.+. ++.++.
T Consensus 202 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L---~~~~~~~~~~~~~-~~~l~~L~~lL~~~--d~~v~~ 275 (530)
T 1wa5_B 202 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL---CRGKKPQPDWSVV-SQALPTLAKLIYSM--DTETLV 275 (530)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH---HCCSSSCCCHHHH-GGGHHHHHHHTTCC--CHHHHH
T ss_pred CCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH---hCCCCCCCcHHHH-HhHHHHHHHHHcCC--CHHHHH
Confidence 87667899999999999999999999999999999999999 4443 33333333 68999999999988 899999
Q ss_pred HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCC
Q 014817 261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
.|+++|.+|+... +....+++.|+++.|+.+|.+.+..++..++.+|.+|+.. +...+.+.. .|+++.|+.+|.+++
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~ 354 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPK 354 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCC
Confidence 9999999999764 5677788899999999999988889999999999999954 566677777 499999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
..+++.|+++|.+|+.++++..+.+++.|+++.|+.+|.++ ++.+++.|+++|.++....
T Consensus 355 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998888888889999999999999877 9999999999999998863
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=7.9e-26 Score=229.74 Aligned_cols=282 Identities=18% Similarity=0.178 Sum_probs=248.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
..++.+++.|++++ ...+..|+..|++++.. +..++..+++.|++|.|+.+|.+++ ++.++..|+++|.++
T Consensus 87 ~~i~~lv~~L~s~~--~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~------~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 87 QELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------PEMLQLEAAWALTNI 158 (530)
T ss_dssp CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHHH
Confidence 34889999998874 34568999999999764 3455677888999999999998763 588999999999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
+.+..+.+..+++.|+++.|+.+|++++++++..|+++|.+|+ ...++++..+.. .|+++.|+.++.+. ++.++.
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~--~~~~~~~~~~~~-~~~l~~L~~ll~~~--~~~v~~ 233 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA--GDSTDYRDYVLQ-CNAMEPILGLFNSN--KPSLIR 233 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHGGGSC--CHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCCccchHHHHH-cCcHHHHHHHhccC--CHHHHH
Confidence 9877678888989999999999999999999999999999994 344677777765 68999999999986 899999
Q ss_pred HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCC
Q 014817 261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
.|+++|.+|+.+. .+.......|+++.|+.+|.+++..++..++++|.+|+.. ++.+..+.. .|+++.|+.+|.+.+
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCC
Confidence 9999999999876 5666667799999999999998899999999999999965 566777777 499999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..++..|+++|.+|+.+++...+.+.+.|+++.|+.+|+++ +..+++.|+++|.+++..
T Consensus 313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999999998888888899999999999999877 899999999999999864
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=1.9e-25 Score=221.64 Aligned_cols=280 Identities=12% Similarity=0.101 Sum_probs=245.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|++++. ...+..|++.|.+++..++.+...+++.|+++.|+++|.++ ++++++.|+++|.+++
T Consensus 64 ~~i~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 64 GVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-------FEDVQEQAVWALGNIA 135 (450)
T ss_dssp THHHHHHHHHTCTTC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHc
Confidence 568899999987632 23468999999999998888888889999999999999876 5899999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccc--hhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 182 LTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRS--QELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
.+..+.+..+.+.|+++.|+.+|++ .+.+++..++++|.+| +.. +..+..+. .|+++.|+.++.++ ++.+
T Consensus 136 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~--~~~l~~L~~~l~~~--~~~v 208 (450)
T 2jdq_A 136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL---CRGKSPPPEFAKV--SPCLNVLSWLLFVS--DTDV 208 (450)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH---HCCSSSCCCGGGT--GGGHHHHHHHTTCC--CHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH---hCCCCCCCCHHHH--HHHHHHHHHHHccC--CHHH
Confidence 8876789999999999999999996 6899999999999999 433 23333332 68999999999988 8999
Q ss_pred hHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhc
Q 014817 259 LKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
+..++++|.+|+... +++..+++.|+++.|+.+|.+.+..++..++++|.+|+... ..++.+.+ .|+++.|++++.+
T Consensus 209 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSS 287 (450)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcC
Confidence 999999999999864 57778889999999999999888999999999999999754 45555666 5999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+++.++..|+++|.+|+.++++..+.+.+.|+++.|+.+|.++ ++.+|+.|+++|.++...
T Consensus 288 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998888888899999999999999887 999999999999999875
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=1.6e-25 Score=226.92 Aligned_cols=282 Identities=15% Similarity=0.131 Sum_probs=246.2
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
.+.++.|++.|.+++ +...+..|+..|++++.. +.++..+.+.|+++.|+++|.++ +++++..|+++|.++
T Consensus 58 ~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l 128 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 128 (529)
T ss_dssp HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 356889999997653 233468899999999875 56999999999999999999887 588999999999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
+.+.++.+..+.+.|+++.|+++|++++.+++..++.+|.+++ ..+++++..+.. .|+++.|+++++++. ....+.
T Consensus 129 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la--~~~~~~~~~i~~-~~~i~~L~~ll~~~~-~~~~~~ 204 (529)
T 1jdh_A 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLW 204 (529)
T ss_dssp HHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred hcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-CCCHHHHHHHHHhCC-hHHHHH
Confidence 8765567888889999999999999999999999999999995 456888888876 689999999999884 566778
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
.++.+|++|+.+.+++..+++.|+++.|+.++.+++..++..++++|.+|+....... .. .|+++.|++++.+.++.
T Consensus 205 ~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-~~~i~~L~~ll~~~~~~ 281 (529)
T 1jdh_A 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDIN 281 (529)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CC-HHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HH-HhHHHHHHHHHcCCCHH
Confidence 8999999999999999999999999999999998888999999999999997543321 12 37899999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhh
Q 014817 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC-TDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~ 398 (418)
+++.|+++|.+|+.++++.+..+.+.|+++.|+.+|.+.. ++.+++.|..+|.+|...
T Consensus 282 v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999988889999999999999999997642 489999999999999765
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=1.1e-24 Score=215.98 Aligned_cols=281 Identities=16% Similarity=0.103 Sum_probs=242.7
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|++++. ..+..|++.|.+++..++.++..+.+.|+++.|+.+|.++. +.++++.|+++|.+++
T Consensus 107 ~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN------RLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC------CHHHHHHHHHHHHHHh
Confidence 468889999987643 45688999999999988899999999999999999998643 5899999999999998
Q ss_pred CCh-hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-chhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 182 LTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR-SQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 182 ~~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
.+. ...+..+. .++++.|+.+|.+++.+++..++++|.+| +. .++.+..+.. .|+++.|+.+|.+. ++.++
T Consensus 179 ~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~-~~~i~~L~~ll~~~--~~~v~ 251 (450)
T 2jdq_A 179 RGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYL---SDGPNDKIQAVID-AGVCRRLVELLMHN--DYKVV 251 (450)
T ss_dssp CCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHH---TSSSHHHHHHHHH-TTTHHHHHHHTTCS--CHHHH
T ss_pred CCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHH---HCCCcHHHHHHHH-cCcHHHHHHHHCCC--chhHH
Confidence 654 23333333 78999999999999999999999999999 54 3455555644 68999999999987 89999
Q ss_pred HHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC
Q 014817 260 KVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI 337 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~ 337 (418)
..|+++|.+|+...+ .+..+++.|+++.|+.+|.+++..++..++++|.+|+. +++..+.+.+ .|+++.|++++.++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcC
Confidence 999999999998765 45567889999999999999888999999999999995 6777788887 49999999999999
Q ss_pred ChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 338 SDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++.++..|+++|.+++. ++++..+.+.+.|+++.|+.++... ++.+++.|.++|.++....
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998 4778888888999999999999877 9999999999999998754
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=204.48 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=173.4
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
.+|.|+++|.+++. ..+++..|++.|.+|+..++++|..|.+.|+||+||++|+++++++++.|+++|+||+ .
T Consensus 9 ~i~~lV~lL~s~~~-----~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa--~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHM-----LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV--F 81 (233)
T ss_dssp CHHHHHHTCCSSCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--T
T ss_pred cHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--h
Confidence 58999999988741 2388999999999999776689999999999999999999999999999999999994 4
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc---C--------
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA---D-------- 294 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~---~-------- 294 (418)
.+++++..|.. .|+|++|+++|.+ + +.++++.|+.+|+||+..+++|..+++. ++++|++++. +
T Consensus 82 ~~~~nk~~I~~-~GaI~~Lv~lL~~~~--~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 82 EDNDNKLEVAE-LNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp TCHHHHHHHHH-TTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCC
T ss_pred CCHHHHHHHHH-cCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccc
Confidence 57899999976 7999999999985 5 7899999999999999999999999875 7999998763 1
Q ss_pred -----CCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhcC
Q 014817 295 -----FDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILK------ISDRATEYAAGALAALCSA 355 (418)
Q Consensus 295 -----~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~------~~~~~~~~A~~~L~~l~~~ 355 (418)
.+..++++|.++|++|+. ++++|+.+++..|+|+.||.+++. .+...+|+|+.+|+||+.+
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 134788999999999996 679999999876889999999986 2667899999999999973
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=229.90 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=246.1
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
.+.++.|++.|.++. +...+..|+..|+.++.. +.++..+.+.|+++.|+++|.++ ++.++..|+.+|.++
T Consensus 55 ~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nL 125 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 125 (644)
T ss_dssp HHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 356889999998753 233468899999998875 56999999999999999999887 589999999999999
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
+...+..+..+.+.|+++.|+++|++++..++..++.+|.+|+ ..+++++..+.. .|+++.|+++|++.. ....+.
T Consensus 126 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La--~~~~~~~~~i~~-~g~v~~Lv~lL~~~~-~~~~~~ 201 (644)
T 2z6h_A 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLW 201 (644)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHTTCC-CHHHHH
T ss_pred HhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH--hcCcHHHHHHHH-cCChHHHHHHHHcCC-hHHHHH
Confidence 8765567888889999999999999999999999999999994 357888988876 689999999999874 567889
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
.++.+|++|+.+.+++..+++.|+++.|+.++.+++..++..++++|.+|+...... ... .++++.|++++.+.+..
T Consensus 202 ~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~ 278 (644)
T 2z6h_A 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDIN 278 (644)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSC-HHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhh-hhHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999888899999999999999643221 112 37899999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhh
Q 014817 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT-DRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~ 398 (418)
+++.|+++|.+|+.++++.++.+.+.|+++.|+.+|.+.++ +.++..|.++|++|+..
T Consensus 279 v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999888899999999999999999987533 89999999999999754
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=8.7e-25 Score=195.96 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=174.0
Q ss_pred CchHHHHHHhcCCCH--HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-
Q 014817 195 DKITSLSSLLFHSSI--EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL- 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~- 271 (418)
-.++.||++|+++++ +++..|+++|.+|+ ..+++++..|.. .|+||+|+++|+++ ++++++.|+++|.||+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~--~~~~~~r~~I~~-~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHEC--FQKSEARKRVNQ-LRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHH-TTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHH--cCCcHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhC
Confidence 458999999999987 89999999999994 467888999976 79999999999998 89999999999999997
Q ss_pred ccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--------------
Q 014817 272 VKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-------------- 336 (418)
Q Consensus 272 ~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-------------- 336 (418)
+++|+..++++|+||+|+++|. +++.++++.++++|.+|+..+++|..+.+ ++++.|++++..
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccc
Confidence 5789999999999999999998 56889999999999999999999999987 469999986531
Q ss_pred --CChHHHHHHHHHHHHHhcCCHHHHHHHHhc-ChHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHhh
Q 014817 337 --ISDRATEYAAGALAALCSASERCQRDAVSA-GVLTQLLLLVQSD-----CTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 --~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~l~~~ 398 (418)
.+..++++|..+|+||+..+++.|+.|.+. |+|+.|+.+++.. .+++.++.|..+|+||+-.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 256899999999999999788999999986 7789999999752 3678999999999999753
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=2.9e-24 Score=217.57 Aligned_cols=279 Identities=14% Similarity=0.046 Sum_probs=241.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|+++++ ..+..|++.|.+++..++.++..+++.|++|.|+++|.++ +.+++..++.+|.+++
T Consensus 101 g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-------~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 101 GGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-------NVKFLAITTDCLQILA 171 (529)
T ss_dssp THHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHHHH
Confidence 568899999988753 3468999999999998888899999999999999999876 5789999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.++++++..+.+.|+++.|+.+|++++ ...+..++.+|.+| +.+++++..+.. .|+++.|+.++.++ ++.++.
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~-~g~~~~L~~ll~~~--~~~~~~ 245 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL---SVCSSNKPAIVE-AGGMQALGLHLTDP--SQRLVQ 245 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---TTSTTHHHHHHH-TTHHHHHHTTTTSS--CHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH---hcCcccHHHHHH-CCCHHHHHHHHhCC--ChHHHH
Confidence 876689999999999999999998775 56677889999999 788888988865 78999999999988 899999
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhc--C
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILK--I 337 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~--~ 337 (418)
.++++|.+|+....... ...|+++.|+++|.+.+..+++.++++|.+|+.. ++++..+.+. |+++.|++++.+ .
T Consensus 246 ~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 246 NCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCC
Confidence 99999999997654321 2358899999999998999999999999999975 5788888884 999999999976 3
Q ss_pred ChHHHHHHHHHHHHHhcCCH---HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 338 SDRATEYAAGALAALCSASE---RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 338 ~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
++.+++.|+++|.+|+.+++ ..+..+.+.|+++.|+.+|+++.++.+++.|+++|+++...
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 47899999999999998543 35778899999999999998774579999999999999864
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.3e-23 Score=186.93 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=179.2
Q ss_pred cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-
Q 014817 193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL- 271 (418)
Q Consensus 193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~- 271 (418)
..|..+.|+.+|++++++++..|+++|.+++ ..+++++..+.. .|+++.|+.+|+++ ++.++..|+++|.||+.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~--~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIA--SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASG 84 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHH--TSCHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999994 367787878865 79999999999998 89999999999999995
Q ss_pred ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817 272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA 350 (418)
Q Consensus 272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~ 350 (418)
+++++..+++.|+++.|+.+|.+++..+++.++++|.+|+. .++.+..+.+ .|+++.|++++.+++..+++.|+++|.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999995 5667777777 599999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 351 ALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 351 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+++..+++.+..+.+.|+++.|+.++.++ ++.+++.|.++|++|+.+
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence 99998789999999999999999999876 999999999999999753
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=8.9e-24 Score=223.65 Aligned_cols=281 Identities=15% Similarity=0.120 Sum_probs=243.7
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.++.|++.|+.+. +...+..|+..|.+++.. +.++..+.+.|+++.|+.+|.++ ++.++..|+++|.+|+
T Consensus 192 ~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 192 QMVSAIVRTMQNTN-DVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 56788899997653 334578999999998765 67799999999999999999887 5889999999999998
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
...++.+..+.+.|+++.|+++|.+++..++..++.+|.+++ ..+++++..+.. .|+++.|+.+|+++. ....+..
T Consensus 263 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~-~~~i~~Lv~lL~~~~-~~~~~~~ 338 (780)
T 2z6g_A 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLWT 338 (780)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHT-TTHHHHHHHHHTTCC-CHHHHHH
T ss_pred CCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHH-cCCHHHHHHHHhcCC-HHHHHHH
Confidence 776577888889999999999999999999999999999995 457888888876 689999999999873 4566778
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
++.+|++|+.+..++..+++.|+++.|+.+|.+.+..++..++++|.+|+...... ... .++++.|++++.+.+..+
T Consensus 339 a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~v 415 (780)
T 2z6g_A 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINV 415 (780)
T ss_dssp HHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhh-hhHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999888889999999999999654321 112 368999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhh
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT-DRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~ 398 (418)
++.|+++|.+|+.++++.+..+.+.|+++.|+.+|.+.++ +.+++.|+++|.+|+..
T Consensus 416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999888899999999999999999976423 58999999999999754
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=219.00 Aligned_cols=279 Identities=14% Similarity=0.110 Sum_probs=239.6
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
+.+.++.|+..|++.+ ...+..|+..|.+++... .++..+.. .|+++.|+++|.+.. +++++..|+.+|.
T Consensus 12 ~~g~i~~Lv~lL~~~~--~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~------~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 12 ATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLH 82 (644)
T ss_dssp CTTTHHHHHHHHTCSC--HHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCC------CHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCC--HHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCC------CHHHHHHHHHHHH
Confidence 4456899999998664 345789999999999765 46666665 489999999998653 5889999999999
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
+|+.+. +++..+.+.|+++.|+++|+++++.++..|+++|.+|+ ...+..+..+.. .|+++.|+.+|+++ ++.+
T Consensus 83 ~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~--~~~~~~~~~v~~-~g~i~~Lv~lL~~~--~~~~ 156 (644)
T 2z6h_A 83 NLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRL-AGGLQKMVALLNKT--NVKF 156 (644)
T ss_dssp HHTTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSTTHHHHHHH-TTHHHHHHHGGGCC--CHHH
T ss_pred HHhcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH--hCcchhHHHHHH-CCChHHHHHHHCcC--CHHH
Confidence 999887 68999999999999999999999999999999999995 334566666654 79999999999998 7888
Q ss_pred hHHHHHHHHHHcc-ccccHHHHHHcCchHHHHHHhcCCC-cccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817 259 LKVGIKALFALCL-VKQTRYKAVAAGAAETLVDRLADFD-KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 259 ~~~a~~aL~~L~~-~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
+..++.+|.+|+. +++++..+++.|+++.|+++|.+.+ ..++..++.+|.+|+.+++++..+++. |+++.|++++..
T Consensus 157 ~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~-g~l~~L~~ll~~ 235 (644)
T 2z6h_A 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHT-THHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHC-CCHHHHHHHHhc
Confidence 8999999999996 6789999999999999999998764 456788999999999999999999995 999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+..+++.++++|.+|+...+.. ....|+++.|+.+|.+. ++.+++.|+++|.+|+..
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN 293 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999999999843221 12247899999999877 999999999999999875
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=3.5e-23 Score=184.12 Aligned_cols=198 Identities=15% Similarity=0.093 Sum_probs=178.0
Q ss_pred hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817 144 SHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVL 223 (418)
Q Consensus 144 ~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~ 223 (418)
..|+.+.|+.+|.++ +++++..|+++|.+++..+++.+..+.+.|+++.|+++|++++++++..|+++|.+++
T Consensus 10 ~~~~~~~l~~LL~s~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNSP-------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 367899999999887 5899999999999999776688999999999999999999999999999999999993
Q ss_pred hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHH
Q 014817 224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAER 302 (418)
Q Consensus 224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~ 302 (418)
..+++++..+.. .|+++.|+.+|+++ ++.++..|+++|.||+... +++..+++.|+++.|+++|.+++..++..
T Consensus 83 --~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 157 (210)
T 4db6_A 83 --SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157 (210)
T ss_dssp --TSCHHHHHHHHH-TTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred --cCCcHHHHHHHH-CCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 367788888865 79999999999998 8999999999999999654 56678889999999999999989999999
Q ss_pred HHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 303 ALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 303 a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
++++|.+|+.. ++.+..+.+ .|+++.|++++.+++..+++.|+++|.+|+.
T Consensus 158 a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 158 ALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999999977 788888888 4999999999999999999999999999985
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7e-23 Score=209.50 Aligned_cols=251 Identities=11% Similarity=0.099 Sum_probs=209.4
Q ss_pred hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHH---HHHH
Q 014817 138 NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIE---VRVN 214 (418)
Q Consensus 138 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~---~~~~ 214 (418)
++..+.+.|++|.|+.++++. ++.+++.|+++|.+|+.+. ++|..+++.|++++|+.+|.+++.. .+..
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 677889999999999999887 5899999999999999776 8999999999999999999998655 8999
Q ss_pred HHHHHHHHHhcccchhhhhHhhc--hhhhHHHHHHHhhcCCCCh------------hhhHHHHHHHHHHccccc-----c
Q 014817 215 SAALIEIVLAGMRSQELRAQISN--LDEIFEGVIDILKNLSSYP------------RGLKVGIKALFALCLVKQ-----T 275 (418)
Q Consensus 215 a~~~L~~L~~~s~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~------------~~~~~a~~aL~~L~~~~~-----n 275 (418)
|+.+|.++ ....+....+.. ..|+|++|+.+|..+.... ..+..|+.||.||+..++ .
T Consensus 521 AA~ALArL---lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~ 597 (778)
T 3opb_A 521 GCRALTRM---LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV 597 (778)
T ss_dssp HHHHHHHH---HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHH---HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence 99999999 444444444432 1489999999998321011 237799999999998863 4
Q ss_pred HHHHHHc-CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH-HHHHhcc-----CChHHHHHHHhcCChHHHHHHHHH
Q 014817 276 RYKAVAA-GAAETLVDRLADFDKCDAERALATVELLCRIPAGC-AEFAEHA-----LTVPLLVKTILKISDRATEYAAGA 348 (418)
Q Consensus 276 ~~~i~~~-G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~-----g~i~~Lv~~l~~~~~~~~~~A~~~ 348 (418)
+..+++. |+++.|..+|.+++..++..|+.+|.||+.+++++ +++.+.. +.++.||.++..++...++.|+++
T Consensus 598 r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 598 CKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence 7888985 99999999999988899999999999999999886 4564321 237899999988999999999999
Q ss_pred HHHHhcCCHHHHHHHHhc-ChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817 349 LAALCSASERCQRDAVSA-GVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 349 L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
|.+++.+++...+.+.+. ++++.++.+++. + ++.++..++.++.||..+..
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhhc
Confidence 999987688887878886 899999999987 5 99999999999999998643
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=1.7e-22 Score=213.85 Aligned_cols=271 Identities=11% Similarity=0.091 Sum_probs=221.8
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.++.+++.|.+++.. .+..++..++.. ++..+. .|++|.|+.+|.+. ++.+++.|+.+|.+|+.
T Consensus 116 ~i~~lv~~L~~~~~~--~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQM--LKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDE-------DQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ----------CCSCH--HHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCccHH--HHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhC
Confidence 578999999987543 345566666533 333444 89999999999865 68999999999999998
Q ss_pred ChhHHHhhccc-CCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 183 TETECMEIASD-ADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 183 ~~~~~~~~i~~-~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
+. .++..+.. .|+++.|+++|+++ +.+++..|+.+|.+| +..++++..++. .|+|+.|+.+|+++ ++.++.
T Consensus 180 ~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L---s~~~~~~~~i~~-~g~I~~Lv~lL~~~--~~~v~~ 252 (780)
T 2z6g_A 180 KE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL---SHHREGLLAIFK-SGGIPALVNMLGSP--VDSVLF 252 (780)
T ss_dssp SH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HTSHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHH
T ss_pred CC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH---hCCchhHHHHHH-cCCHHHHHHHHcCC--CHHHHH
Confidence 77 56666664 58999999999866 899999999999999 777888888876 69999999999998 899999
Q ss_pred HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCC
Q 014817 261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
.|+++|.||+... +.+..+.+.|+++.|+.+|.+++..+++.++.+|.+|+. +++++..+... |+++.|++++++.+
T Consensus 253 ~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~ 331 (780)
T 2z6g_A 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYT 331 (780)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CCHHHHHHHHhcCC
Confidence 9999999999875 556666789999999999998888888999999999995 68899999885 99999999998754
Q ss_pred -hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 339 -DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 339 -~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
...++.++.+|++|+. .+..+..+++.|+++.|+.++.+. +...++.|+++|.+|+...
T Consensus 332 ~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 332 YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp CHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhccc
Confidence 4566789999999997 667788899999999999999776 8899999999999999764
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.7e-21 Score=181.95 Aligned_cols=225 Identities=14% Similarity=0.057 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIASDADKITSLSS-LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV 245 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L 245 (418)
.+-+..|+..|.++..+. ++...+.+.|+++.|+. +|++++++++..|+++|.+++ ..++..+..+.. .|++++|
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia--~~n~~~~~~vv~-~g~l~~L 129 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS--QNVAAIQEQVLG-LGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-CCCHHHH
Confidence 456788999999998776 68888899999999999 999999999999999999995 456677777765 7999999
Q ss_pred HHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhc
Q 014817 246 IDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEH 323 (418)
Q Consensus 246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~ 323 (418)
+.+|++.. +..+++.|+++|.||+.+. .....++++|+++.|+.+|.+++..++..|+++|.+|+. +++.++.+++
T Consensus 130 l~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~- 207 (296)
T 1xqr_A 130 LRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS- 207 (296)
T ss_dssp HHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred HHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-
Confidence 99999653 6889999999999999765 466788899999999999999999999999999999985 4678888888
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc--ChHHHH---HHHHhhC-CCHHHHHHHHHHHHHHHh
Q 014817 324 ALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSA--GVLTQL---LLLVQSD-CTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 324 ~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~L---~~ll~~~-~~~~~~~~A~~~L~~l~~ 397 (418)
.|+++.|+.+|.+.+..+++.|+.+|.+|+.+.+......... .....| .+-++.. .+....++|..++..+-.
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999766555443322 122222 3334322 135666777777766653
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2.9e-21 Score=180.27 Aligned_cols=199 Identities=15% Similarity=0.053 Sum_probs=172.3
Q ss_pred HHHHHHHHHhhcCC----------CchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHH-HhhcccccccCCChhHH
Q 014817 102 SLVRTLLNQASSES----------NTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQ-VFFTNINVKTASSPELA 170 (418)
Q Consensus 102 ~~i~~lv~~L~~~~----------~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~v~ 170 (418)
..++..+..|.++. .+.+.+..|+..|..++.+ ..++..|++.|++|.|+. +|.++ +++++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~-------~~~vr 99 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAG-------AAGLR 99 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCS-------SHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCC-------CHHHH
Confidence 45677777777652 1234578899999999864 568888999999999999 99877 68999
Q ss_pred HHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817 171 HESLALLVMFPLTETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL 249 (418)
Q Consensus 171 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL 249 (418)
+.|+++|++++.+++.++..+++.|++++|+.+|+++ +..++..|+|+|.+++ ..++.....+.. .|+++.|+.+|
T Consensus 100 ~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~--~~~~~~~~~~~~-~ggi~~L~~lL 176 (296)
T 1xqr_A 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV--REQEAGLLQFLR-LDGFSVLMRAM 176 (296)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH--cCCcHHHHHHHH-CCCHHHHHHHH
Confidence 9999999999988878899999999999999999864 7999999999999994 345555666655 68999999999
Q ss_pred hcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 250 KNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 250 ~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
+++ +..++..|+++|.+|+.. .+.+..+++.|+++.|+.+|.+++..+++.++.+|.+|+..
T Consensus 177 ~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 177 QQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 998 899999999999999875 56889999999999999999999999999999999999976
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.2e-21 Score=194.69 Aligned_cols=327 Identities=12% Similarity=0.080 Sum_probs=242.6
Q ss_pred CCCCcccHHHHHH----HHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccCCCcccCCCCCCCCC-hHHHHHHH
Q 014817 34 CTGQTYDRPSIES----WVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAE-PSLVRTLL 108 (418)
Q Consensus 34 ~~g~~~~r~~i~~----~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~-~~~i~~lv 108 (418)
.|.+.-||..|.+ |+...-. .+-..++++--++.-|..... .. .+ ...++.+.
T Consensus 283 ACi~~~cR~~I~~~~~~~L~~~l~-----------~~~ir~lAavvL~KL~~~~~~----------~~-~si~~La~~~~ 340 (778)
T 3opb_A 283 ACIDETMRTYITENYLQLLERSLN-----------VEDVQIYSALVLVKTWSFTKL----------TC-INLKQLSEIFI 340 (778)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHTT-----------SGGGHHHHHHHHHHHTGGGTC----------TT-CCHHHHHHHHH
T ss_pred HhCCcHHHHHHHHhHHHHHHHHhc-----------cHHHHHHHHHHHHHHhcCCCC----------Cc-CcHHHHHHHHH
Confidence 5888888888876 5553211 112333444444454543211 11 11 22345566
Q ss_pred HHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh--
Q 014817 109 NQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-- 185 (418)
Q Consensus 109 ~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-- 185 (418)
+.|..+. ...+..|+..|..++.+ +..|+.+++ .|+++.|+++++... +..+...++.+|.||+...+
T Consensus 341 ~~L~~~~--~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~------d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 341 NAISRRI--VPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQK------MTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHTTTCC--HHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHhcCC--ccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCC------CchHHHHHHHHHHHhcCCCccc
Confidence 6666542 23468899999999864 677888887 466999999998632 45678889999999876321
Q ss_pred -----------------------------------H-HHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch
Q 014817 186 -----------------------------------E-CMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ 229 (418)
Q Consensus 186 -----------------------------------~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~ 229 (418)
+ ++..+.+.|+++.|+.+++++++.+++.++++|.+| +.++
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL---S~d~ 488 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI---TRSK 488 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH---HTSG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH---cCCH
Confidence 1 567888999999999999999999999999999999 8889
Q ss_pred hhhhHhhchhhhHHHHHHHhhcCCCC-hhhhHHHHHHHHHHccccccHHHHH--H-cCchHHHHHHhcC-CCcc------
Q 014817 230 ELRAQISNLDEIFEGVIDILKNLSSY-PRGLKVGIKALFALCLVKQTRYKAV--A-AGAAETLVDRLAD-FDKC------ 298 (418)
Q Consensus 230 ~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~aL~~L~~~~~n~~~i~--~-~G~v~~Lv~lL~~-~~~~------ 298 (418)
++|..+.. .|++++|+.+|.++... ...+..|+.||.+|....+....+- + .|+|++|+++|.. ....
T Consensus 489 ~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 489 NFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 99999976 79999999999988311 1278999999999996655444331 1 3999999999983 2111
Q ss_pred ------c-HHHHHHHHHHHhcCH-----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHh
Q 014817 299 ------D-AERALATVELLCRIP-----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ-RDAVS 365 (418)
Q Consensus 299 ------~-~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~ 365 (418)
+ +..|+.+|.||+..+ +.|..++.+.|+++.|+.+|.+++..+++.|++++.||+. +++.+ +.+.+
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHh
Confidence 1 668999999999865 4578788744899999999999999999999999999998 55543 34432
Q ss_pred c------ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 366 A------GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 366 ~------g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
. +.++.|+.+++++ +...|++|+++|.|+..
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts 683 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIAT 683 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred hcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 2 2478899999777 99999999999999964
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.85 E-value=9e-22 Score=151.79 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=71.3
Q ss_pred CcCCCCCCCcccCcCccccccCCeecCCC-CcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817 8 LDLSVQIPYHFRCPISLELMCDPVTVCTG-QTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS 86 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~ 86 (418)
.....++|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.++..
T Consensus 13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 33445789999999999999999999999 99999999999986 67899999999999999999999999999998753
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.85 E-value=6.2e-22 Score=148.95 Aligned_cols=73 Identities=33% Similarity=0.479 Sum_probs=69.0
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
..+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999985 6889999999998899999999999999999874
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.85 E-value=8.8e-22 Score=152.44 Aligned_cols=75 Identities=32% Similarity=0.470 Sum_probs=70.1
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS 86 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~ 86 (418)
..++|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.+|..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999999984 78899999999999999999999999999998753
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.81 E-value=1.6e-20 Score=159.35 Aligned_cols=75 Identities=39% Similarity=0.529 Sum_probs=69.8
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
..++|++|+||||+++|+|||+++|||+|||.||++|+..+..+||.|+.++...++.||..|+++|+.|+..|+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 468899999999999999999999999999999999998644579999999998899999999999999999874
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.80 E-value=4e-20 Score=137.31 Aligned_cols=75 Identities=52% Similarity=0.933 Sum_probs=70.3
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
+.+++++|.||||+++|+|||+++|||+||+.||.+|+..+..+||.|+.++...++.+|..++++|+.|..+|+
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999999999998778899999999998899999999999999999874
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=136.52 Aligned_cols=74 Identities=27% Similarity=0.453 Sum_probs=65.0
Q ss_pred CCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHh
Q 014817 13 QIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATG-----NTTCPV--TRSP-LTDFTLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-----~~~cp~--~~~~-l~~~~l~~n~~L~~~i~~~~~~ 83 (418)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+ |... +...++.||..|+++|+.|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 5678999999999999999996 99999999999999753 468999 5544 8888999999999999999988
Q ss_pred ccC
Q 014817 84 NRS 86 (418)
Q Consensus 84 ~~~ 86 (418)
+..
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 653
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=1.3e-18 Score=161.98 Aligned_cols=76 Identities=38% Similarity=0.520 Sum_probs=70.5
Q ss_pred CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
...++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.+++..++.||..|+++|+.|+.+|+
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 3468899999999999999999999999999999999998766679999999998899999999999999998874
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=6e-16 Score=154.68 Aligned_cols=289 Identities=19% Similarity=0.158 Sum_probs=220.4
Q ss_pred CCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHH
Q 014817 95 PKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESL 174 (418)
Q Consensus 95 p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~ 174 (418)
|..+...+.|+.|+.++.++.. .+.|+.|+..|+.++++ .+. -+..++++.|+..|..+.+ +.++...++
T Consensus 14 ~~~qs~~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~---y~~-~Vg~~~l~~li~~L~~d~~-----D~e~v~~~L 83 (651)
T 3grl_A 14 GPQHTEAETIQKLCDRVASSTL-LDDRRNAVRALKSLSKK---YRL-EVGIQAMEHLIHVLQTDRS-----DSEIIGYAL 83 (651)
T ss_dssp ----CHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTT---TTT-HHHHHTHHHHHHHHHSCTT-----CHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH---hHH-HhhhhhHHHHHHHHhcccc-----cHHHHHHHH
Confidence 3334456789999999987643 34588999999999864 333 3447889999999988753 788889999
Q ss_pred HHHhcCCCChhH-----------------HHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh
Q 014817 175 ALLVMFPLTETE-----------------CMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS 236 (418)
Q Consensus 175 ~~L~~l~~~~~~-----------------~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~ 236 (418)
.+|.++...+++ ..+.+ .+.+.|+.|+.+|++.+..+|.+++..|..|+. ...+.+.+.|.
T Consensus 84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~-~r~~~~Q~~Il 162 (651)
T 3grl_A 84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLK-QLGPQVQQIIL 162 (651)
T ss_dssp HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HSHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 988765433211 12233 367889999999999999999999999999963 33344777786
Q ss_pred chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCC----cccHHHHHHHHHHHh
Q 014817 237 NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFD----KCDAERALATVELLC 311 (418)
Q Consensus 237 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~----~~~~~~a~~~L~~L~ 311 (418)
...++|+.|+.+|.+. ...++..++.+|.+|+.++.+.++++. .|+++.|+.++.... ..+++.++.+|.+|.
T Consensus 163 ~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL 240 (651)
T 3grl_A 163 VSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL 240 (651)
T ss_dssp HSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 5579999999999988 788999999999999999887777766 699999999997532 367899999999999
Q ss_pred cC-HhHHHHHHhccCChHHHHHHHhcCChH------HHHH---HHHHHHHHhcC------CHHHHHHHHhcChHHHHHHH
Q 014817 312 RI-PAGCAEFAEHALTVPLLVKTILKISDR------ATEY---AAGALAALCSA------SERCQRDAVSAGVLTQLLLL 375 (418)
Q Consensus 312 ~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~------~~~~---A~~~L~~l~~~------~~~~~~~~~~~g~i~~L~~l 375 (418)
.+ ..++..+.+. |+++.|..++..+... .-.+ ++.++.-++.. ++.++..+.+.|++..|+++
T Consensus 241 r~N~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~l 319 (651)
T 3grl_A 241 KNNNSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTI 319 (651)
T ss_dssp TTCHHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcCHHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Confidence 75 4577777775 9999999988653221 1223 55666666663 34678889999999999999
Q ss_pred HhhCC-CHHHHHHHHHHHHHHHh
Q 014817 376 VQSDC-TDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 376 l~~~~-~~~~~~~A~~~L~~l~~ 397 (418)
+.+.+ ...++..|..++..+.+
T Consensus 320 l~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 320 LMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHT
T ss_pred HccCCCCHHHHHHHHHHHHHHHh
Confidence 97543 57788888887777655
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=122.63 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=67.6
Q ss_pred CCCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHhcc
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPL-TDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l-~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
..+++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++++.|...++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 357889999999999999999999 9999999999999974 457899999997 57789999999999999998764
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.59 E-value=1.8e-16 Score=110.38 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=49.1
Q ss_pred cccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 014817 17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNH 71 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~ 71 (418)
.|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|++++...+++|++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 89999999999999986 45699999999998988875
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.59 E-value=2.9e-13 Score=135.40 Aligned_cols=285 Identities=11% Similarity=0.073 Sum_probs=216.1
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh-----------------hhhHH-hhcChHHHHHHHhhccccccc
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK-----------------NRSLI-SSHNVRAILSQVFFTNINVKT 163 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------~~~~i-~~~g~i~~Lv~lL~~~~~~~~ 163 (418)
..++.|+..|+....|.+....++..|..+...++. +.+.+ .+.+.++.|+.+|.+.
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~----- 134 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF----- 134 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-----
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-----
Confidence 457889999988766655455677777665543322 22233 3468999999999877
Q ss_pred CCChhHHHHHHHHHhcCCCChhH-HHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh
Q 014817 164 ASSPELAHESLALLVMFPLTETE-CMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI 241 (418)
Q Consensus 164 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~ 241 (418)
+..++..++..|..|+....+ .++.|. .+++|+.|+.+|.+....+|..++.+|.+| +.+....+.+...+|+
T Consensus 135 --df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L---t~~n~~iQklVAFEna 209 (651)
T 3grl_A 135 --DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL---TRSNGAIQKIVAFENA 209 (651)
T ss_dssp --CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH---HTTCHHHHHHHHHTTH
T ss_pred --cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH---hcCCHHHHHHHHHhcc
Confidence 578999999999988755434 777777 679999999999999999999999999999 5555555556566899
Q ss_pred HHHHHHHhhcCCC--ChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcc------cHHH---HHHHHHH
Q 014817 242 FEGVIDILKNLSS--YPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKC------DAER---ALATVEL 309 (418)
Q Consensus 242 i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~------~~~~---a~~~L~~ 309 (418)
++.|+.+++.... -..+...++.+|.||...+ .|+..+.|.|.++.|..+|..++.. ...+ ++.++..
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl 289 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV 289 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 9999999987510 1367889999999999775 5999999999999999999754321 2233 6777777
Q ss_pred HhcC-------HhHHHHHHhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHhcC---------hHHH
Q 014817 310 LCRI-------PAGCAEFAEHALTVPLLVKTILKI--SDRATEYAAGALAALCSASERCQRDAVSAG---------VLTQ 371 (418)
Q Consensus 310 L~~~-------~~~~~~i~~~~g~i~~Lv~~l~~~--~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g---------~i~~ 371 (418)
|... ..++..+.+. |+++.|++++... ...++..|+.++..+.++++..+..+.+.. ++..
T Consensus 290 Lv~~~~~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~l 368 (651)
T 3grl_A 290 LVSPNNPPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVL 368 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHH
Confidence 7743 2466777775 9999999999874 677899999999999999999998887654 3333
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 372 LLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 372 L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
|+.++.+......|-+|+..++....
T Consensus 369 L~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 369 LMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHh
Confidence 44445444467888888888887764
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=123.77 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=63.6
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHh
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD-FTLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~-~~l~~n~~L~~~i~~~~~~ 83 (418)
.+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++.+++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4466789999999999999999999999999999998666789999999976 7899999999999888643
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-15 Score=134.75 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHh
Q 014817 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPV--TRSPLTDFTLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~--~~~~l~~~~l~~n~~L~~~i~~~~~~ 83 (418)
...+|+||||+++|+|||++ .|||+|||.||.+||.. +...||+ |++.+...++.||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 45679999999999999986 99999999999999985 3567999 99999999999999999999999775
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=124.48 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=63.4
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF-TLIPNHTLRRLIQDWCV 82 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~-~l~~n~~L~~~i~~~~~ 82 (418)
.+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35667899999999999999999999999999999997667899999999866 89999999999998864
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.54 E-value=1.5e-15 Score=121.43 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=67.7
Q ss_pred CCCCCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC-------CCCcccHHHHH
Q 014817 3 GSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD-------FTLIPNHTLRR 75 (418)
Q Consensus 3 ~~~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~-------~~l~~n~~L~~ 75 (418)
|+|+.........+++.||||.+.|.+||+++|||+||+.||.+|+..+...||.|+..+.. .++..|..+..
T Consensus 1 gsm~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~ 80 (115)
T 3l11_A 1 GSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT 80 (115)
T ss_dssp -CCCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred CCCcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence 56777666667778999999999999999999999999999999998767889999998853 56677888888
Q ss_pred HHHHHH
Q 014817 76 LIQDWC 81 (418)
Q Consensus 76 ~i~~~~ 81 (418)
+++.|.
T Consensus 81 ~i~~~~ 86 (115)
T 3l11_A 81 IIQKHY 86 (115)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 888875
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.50 E-value=7.9e-15 Score=113.82 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR 85 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~ 85 (418)
.+++++.||||.+.|.+|+++ +|||+||+.||.+|+.. ...||.|+..+...++.+|..++++++.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 445678999999999999998 89999999999999985 5789999999988889999999999999988653
No 55
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.50 E-value=1.1e-14 Score=150.71 Aligned_cols=74 Identities=27% Similarity=0.426 Sum_probs=69.7
Q ss_pred CCCCCcccCcCccccccCCeecCCC-CcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTG-QTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS 86 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~ 86 (418)
.++|++|+|||++++|+|||++++| +||+|.+|++|+.. +.+||.|++++...+++||++|++.|+.|+.++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999997 79999999999986 67999999999999999999999999999998754
No 56
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=101.34 Aligned_cols=60 Identities=8% Similarity=0.346 Sum_probs=51.8
Q ss_pred CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
......+++++.||||++.+++|++++|||+||+.||.+|+..+...||.|+.++...++
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 6 SGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCSCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 334457788999999999999999999999999999999997667889999999876543
No 57
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=103.56 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCCcCCCCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCCC-CCCCccc
Q 014817 6 EPLDLSVQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPLT-DFTLIPN 70 (418)
Q Consensus 6 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~-~~~l~~n 70 (418)
+......++++++.||||++.|.+||+++ |||+||+.||.+|+.. +...||.|++++. ...+.+|
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 4 GSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred CcccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34445568889999999999999999999 9999999999999985 3468999999864 3444444
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=111.71 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=63.7
Q ss_pred CCCCcccCcCccccccCCee-cCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 13 QIPYHFRCPISLELMCDPVT-VCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
.+.+++.||||++.|.+||+ ++|||+||+.||.+|+......||.|+.++...++.+|..+.++++...+..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 45667899999999999999 8999999999999999975578999999999888999988888887776653
No 59
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1e-14 Score=109.85 Aligned_cols=66 Identities=29% Similarity=0.457 Sum_probs=57.2
Q ss_pred CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCcccHHHHH
Q 014817 10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG-----NTTCPVTRSPLTDFTLIPNHTLRR 75 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~-----~~~cp~~~~~l~~~~l~~n~~L~~ 75 (418)
....+.+++.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+..+...++.+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 345678899999999999999999999999999999999862 668999999998888888876544
No 60
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-15 Score=112.17 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=56.9
Q ss_pred CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC------CCCCCCCCCCCCCCCCcccHHHHH
Q 014817 10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG------NTTCPVTRSPLTDFTLIPNHTLRR 75 (418)
Q Consensus 10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~------~~~cp~~~~~l~~~~l~~n~~L~~ 75 (418)
....+.+++.||||.+.|.+|++++|||+||+.||.+|+... ...||.|+..+...++.+|..+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 345778899999999999999999999999999999998752 568999999998878888776544
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=100.36 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=53.2
Q ss_pred cCCCCCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 9 DLSVQIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 9 ~~~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
....++.+++.||||++.|.+|+++ +|||+||+.||.+|+.. ...||.|+..+...++.++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3445778899999999999999998 99999999999999986 6789999999987776554
No 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.46 E-value=3.6e-14 Score=111.89 Aligned_cols=69 Identities=14% Similarity=0.331 Sum_probs=61.2
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHHH
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDF----TLIPNHTLRRLIQDWCV 82 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~----~l~~n~~L~~~i~~~~~ 82 (418)
.+++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 567889999999999999998 99999999999999986 58899999998765 67889999999888744
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=108.96 Aligned_cols=67 Identities=24% Similarity=0.539 Sum_probs=57.5
Q ss_pred cCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc-----CCCCCCCCCCCCCCCCCcccHHHHH
Q 014817 9 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-----GNTTCPVTRSPLTDFTLIPNHTLRR 75 (418)
Q Consensus 9 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~cp~~~~~l~~~~l~~n~~L~~ 75 (418)
.....+.+++.||||.+.+++|++++|||+||+.||.+|+.. +...||.|+..+...++.+|..+++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 334577889999999999999999999999999999999875 3678999999998888888876544
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=102.49 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=54.7
Q ss_pred cCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHH
Q 014817 9 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRR 75 (418)
Q Consensus 9 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~ 75 (418)
....+...++.||||.+.|.+|++++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+.+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 7 GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred CCcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 344566778999999999999999999999999999999985 678999999986 56677754433
No 65
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.45 E-value=4.8e-14 Score=113.02 Aligned_cols=71 Identities=21% Similarity=0.412 Sum_probs=63.6
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWC 81 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~ 81 (418)
...+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.|..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 35788899999999999999999999999999999999875568999999998888889999988887753
No 66
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=96.95 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=46.0
Q ss_pred CCCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCC
Q 014817 5 LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVT 58 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~ 58 (418)
|+.......+.+++.||||.+.+.+|++++|||+||+.||.+|++. +...||.|
T Consensus 8 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cchHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3444445578889999999999999999999999999999999984 45679987
No 67
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=3e-14 Score=114.05 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=63.0
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~ 84 (418)
.+.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.+|..+..+++.|....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 456789999999999999999 9999999999999987 67999999998889999999999999887754
No 68
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=99.28 Aligned_cols=62 Identities=21% Similarity=0.428 Sum_probs=51.9
Q ss_pred CCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCCCCCCCCCCC
Q 014817 6 EPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 6 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~~~~l 67 (418)
+.......+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|++++...++
T Consensus 9 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 9 ASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 334444578889999999999999999999999999999999973 46689999998875543
No 69
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.42 E-value=7.3e-14 Score=118.95 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=62.0
Q ss_pred CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHHh
Q 014817 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLT-DFTLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~-~~~l~~n~~L~~~i~~~~~~ 83 (418)
.+.+++.||||.+.|.+||++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..+..+|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 455678999999999999998 999999999999999977888999999984 56689999999999998654
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.40 E-value=2.5e-11 Score=107.36 Aligned_cols=189 Identities=17% Similarity=0.058 Sum_probs=156.5
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
.+.++.|+..|.++ ++.++..|+.+|..+.. .+.++.|++.|.++++.+|..++.+|..+
T Consensus 18 ~~~~~~L~~~L~~~-------~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-- 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQI-- 77 (211)
T ss_dssp GGGHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH--
T ss_pred HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Confidence 56789999999866 68999999999987542 36789999999999999999999999998
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
.. .+.++.|+.+|.+. ++.++..|+.+|..+.. .++++.|+.+|.+++..++..++
T Consensus 78 -~~-----------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~ 133 (211)
T 3ltm_A 78 -GD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAA 133 (211)
T ss_dssp -CC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 31 35789999999988 89999999999998853 35889999999998999999999
Q ss_pred HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817 305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 384 (418)
.+|..+.. ...++.|++++.+.++.++..|+.+|..+.. ..+++.|..+++++ ++.+
T Consensus 134 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~v 190 (211)
T 3ltm_A 134 FALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFA 190 (211)
T ss_dssp HHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHH
T ss_pred HHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHH
Confidence 99998753 3578899999988999999999999999853 23667788888777 9999
Q ss_pred HHHHHHHHHHHHhhCC
Q 014817 385 KRKAQLLLKLLRDSWP 400 (418)
Q Consensus 385 ~~~A~~~L~~l~~~~~ 400 (418)
|+.|...|..+.....
T Consensus 191 r~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 191 RKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999999988754
No 71
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2e-13 Score=108.41 Aligned_cols=69 Identities=19% Similarity=0.430 Sum_probs=58.3
Q ss_pred CCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 014817 14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLTDFTLIPNHTLRRLIQDWCV 82 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~ 82 (418)
+.+++.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+.++...++.+|..+..+++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999853 3589999999988888888766666666543
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.38 E-value=1e-13 Score=110.74 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=56.7
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI-PNHTLRRLIQDW 80 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~-~n~~L~~~i~~~ 80 (418)
.++++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+++..+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 455667899999999999999999999999999999987667899999999866653 455566655443
No 73
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=2.7e-13 Score=111.78 Aligned_cols=63 Identities=21% Similarity=0.417 Sum_probs=50.6
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 80 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~ 80 (418)
.+++.||||.+.|.|||+++|||+||+.||.+|+.. ..+||.|+.++.... .+..+...+..+
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~ 113 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKM 113 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence 457899999999999999999999999999999985 678999999885432 344444444444
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=5.6e-13 Score=94.70 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=48.6
Q ss_pred CcccCcCccc-cccCC----eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 16 YHFRCPISLE-LMCDP----VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 16 ~~~~Cpi~~~-~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
+++.||||.+ .+.+| ++++|||+||+.||.+|+.++...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4688999999 99999 5789999999999999998767889999999987777654
No 75
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=90.62 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=44.4
Q ss_pred CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCC
Q 014817 8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVT 58 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~ 58 (418)
......+.+++.||||.+.+++|++++|||+||+.||.+|+.. ....||.|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 6 SGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4445577889999999999999999999999999999999764 46789987
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.34 E-value=1e-10 Score=102.57 Aligned_cols=186 Identities=18% Similarity=0.079 Sum_probs=156.7
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
.+..+.++++|.++ ++.++..|+.+|..+.. .+.++.|++.|.++++.+|..++.+|..+
T Consensus 13 ~~~~~~~i~~L~~~-------~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~-- 72 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQI-- 72 (201)
T ss_dssp HHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--
T ss_pred CcchHHHHHHhcCC-------CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Confidence 46788999999887 68999999999987542 35789999999999999999999999988
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
.. .++++.|+.+|.+. ++.++..|+++|.++.. ..+++.|+.+|.+.+..++..++
T Consensus 73 -~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~ 128 (201)
T 3ltj_A 73 -GD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAA 128 (201)
T ss_dssp -CC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 24789999999987 89999999999998853 35889999999988889999999
Q ss_pred HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817 305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 384 (418)
.+|..+.. ...++.|+.++.+.++.++..|+.+|..+.. + .+++.|..+++++ ++.+
T Consensus 129 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~v 185 (201)
T 3ltj_A 129 FALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFA 185 (201)
T ss_dssp HHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHH
T ss_pred HHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHH
Confidence 99988753 3678999999988999999999999999842 2 2677888888777 9999
Q ss_pred HHHHHHHHHHHHh
Q 014817 385 KRKAQLLLKLLRD 397 (418)
Q Consensus 385 ~~~A~~~L~~l~~ 397 (418)
|..|...|..+..
T Consensus 186 r~~A~~aL~~l~~ 198 (201)
T 3ltj_A 186 RKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 77
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.31 E-value=7.9e-13 Score=113.15 Aligned_cols=70 Identities=21% Similarity=0.422 Sum_probs=62.7
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW 80 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~ 80 (418)
...++++|.||||.++|++||+++|||+||+.||.+|+..+..+||.|+.++...++.++..+.+.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 3478889999999999999999999999999999999986566999999999888888998888877764
No 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=94.87 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=48.0
Q ss_pred CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
........+++.||||++.+++|++++|||+||+.||.+|+.. ..+||.|+..+..
T Consensus 6 s~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 6 SGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp CCCCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3334456678999999999999999999999999999999986 5789999988753
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.30 E-value=2.2e-13 Score=112.19 Aligned_cols=67 Identities=15% Similarity=0.329 Sum_probs=55.7
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC---------CCCcccHHHHHHHHH
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD---------FTLIPNHTLRRLIQD 79 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~---------~~l~~n~~L~~~i~~ 79 (418)
.++++|.||||.++|++||+++|||+||+.||.+|+..+...||.|+.++.. ..+.++..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 5678899999999999999999999999999999998766789999986532 234577777776654
No 80
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.6e-12 Score=96.40 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=49.8
Q ss_pred CcCCCCCCCcccCcCccccccC----CeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCCCC
Q 014817 8 LDLSVQIPYHFRCPISLELMCD----PVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLTDF 65 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~~~ 65 (418)
......+.+++.||||.+.|.+ |++++|||+||+.||.+|+... ...||.|+..+...
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3344577889999999999999 9999999999999999999863 47899999987644
No 81
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.29 E-value=3.1e-10 Score=104.87 Aligned_cols=225 Identities=12% Similarity=-0.042 Sum_probs=160.5
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
.++.|++.|..++ ...+..|+..|..+.. .++++.|+.+|.++ ++.++..|+.+|..+..
T Consensus 24 ~i~~L~~~L~~~~--~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~-------~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 24 NDDELFRLLDDHN--SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK-------NYIRRDIGAFILGQIKI 83 (280)
T ss_dssp CHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCC--HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC-------CHHHHHHHHHHHHHhcc
Confidence 3788999998653 3446788888888752 24688999999876 57899999999998874
Q ss_pred ChhHHHhhcccCCchHHHH-HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 183 TETECMEIASDADKITSLS-SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
...... ..++.|. .++++.++.+|..++++|..+ ..... . ....+++.|+.++.+. ++.++..
T Consensus 84 ~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l---~~~~~----~-~~~~~~~~L~~~l~d~--~~~vR~~ 147 (280)
T 1oyz_A 84 CKKCED------NVFNILNNMALNDKSACVRATAIESTAQR---CKKNP----I-YSPKIVEQSQITAFDK--STNVRRA 147 (280)
T ss_dssp CTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH---HHHCG----G-GHHHHHHHHHHHTTCS--CHHHHHH
T ss_pred ccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hccCC----c-ccHHHHHHHHHHhhCC--CHHHHHH
Confidence 431111 1234444 245678899999999999999 32211 1 1135788999999988 8999999
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA 341 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~ 341 (418)
|+.+|.++.. .++++.|+.+|.+++..++..++.+|..+.... ..+++.|+..+.+.++.+
T Consensus 148 a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 148 TAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp HHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHH
Confidence 9999988753 358999999999888888999999998874211 245677888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
+..|+.+|..+.. ..+++.|+.++..+ + ++..|...|..+.
T Consensus 209 R~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 209 RIEAIIGLSYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHHHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcC
Confidence 8888888887652 34666666666543 2 5666666665553
No 82
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=2.5e-10 Score=100.85 Aligned_cols=187 Identities=17% Similarity=0.056 Sum_probs=153.3
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
++..++.|++.|++++ ...+..|+..|..+.. .++++.|+.+|.++ ++.++..|+.+|..
T Consensus 17 ~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADALGQ 76 (211)
T ss_dssp CGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC-------CHHHHHHHHHHHHh
Confidence 3567899999998653 4456788888887642 35789999999876 68999999999987
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
+.. .+.++.|+..|++.++.+|..++.+|..+ .. .+.++.|+.++.+. ++.++
T Consensus 77 ~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~---~~-----------~~~~~~L~~~l~d~--~~~vr 129 (211)
T 3ltm_A 77 IGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-----------ERAVEPLIKALKDE--DWFVR 129 (211)
T ss_dssp HCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-----------GGGHHHHHHHTTCS--SHHHH
T ss_pred hCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-----------HHHHHHHHHHHhCC--CHHHH
Confidence 642 35789999999999999999999999999 32 34789999999888 89999
Q ss_pred HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCCh
Q 014817 260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~ 339 (418)
..|+.+|.++.. ..+++.|+.++.+++..++..++.+|..+.. ..+++.|.+++.++++
T Consensus 130 ~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~ 188 (211)
T 3ltm_A 130 IAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG 188 (211)
T ss_dssp HHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH
Confidence 999999999843 3578999999998888999999999998853 2457788888888999
Q ss_pred HHHHHHHHHHHHHhc
Q 014817 340 RATEYAAGALAALCS 354 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~ 354 (418)
.++..|..+|.++..
T Consensus 189 ~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 189 FARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999877
No 83
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=92.02 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=50.3
Q ss_pred CCCCcCCCCCCCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 5 LEPLDLSVQIPYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
-+.......+.+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 3 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 3 SGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34444556778899999999999998 89999999999999999986 6789999988753
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=5.6e-10 Score=97.75 Aligned_cols=187 Identities=16% Similarity=0.037 Sum_probs=154.4
Q ss_pred CChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 99 AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 99 ~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
..+...+.+++.|.+++. ..+..|+..|..+.. .++++.|+++|.++ ++.++..|+.+|.
T Consensus 11 ~~~~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~~L~ 70 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADALG 70 (201)
T ss_dssp CCHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------SHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHhcCCCH--HHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 456778999999988753 456888888887642 35789999999766 5889999999998
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
.+.. ...++.|+..|.+.++.+|..|+++|..+ .. ..+++.|+.++.+. ++.+
T Consensus 71 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-----------~~~~~~L~~~l~d~--~~~v 123 (201)
T 3ltj_A 71 QIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-----------ERAVEPLIKALKDE--DWFV 123 (201)
T ss_dssp HHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-----------GGGHHHHHHHTTCS--SHHH
T ss_pred hhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-----------HHHHHHHHHHHcCC--CHHH
Confidence 7642 35789999999999999999999999998 32 24788899999888 8999
Q ss_pred hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817 259 LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS 338 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~ 338 (418)
+..|+++|.++.. ..+++.|+.++.+.+..++..++.+|..+.. ..+++.|..++.+.+
T Consensus 124 r~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 124 RIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCC
Confidence 9999999999853 4688999999998888999999999998842 245778888888899
Q ss_pred hHHHHHHHHHHHHHh
Q 014817 339 DRATEYAAGALAALC 353 (418)
Q Consensus 339 ~~~~~~A~~~L~~l~ 353 (418)
+.++..|..+|..+-
T Consensus 183 ~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 183 GFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 85
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.3e-12 Score=93.28 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=50.0
Q ss_pred CCCCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 13 QIPYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
...+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.|+.++...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 445678999999999999 89999999999999999986 5789999999987777654
No 86
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=91.19 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=51.7
Q ss_pred CCcCCCCCCCcccCcCccccccCC---eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 7 PLDLSVQIPYHFRCPISLELMCDP---VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 7 ~~~~~~~~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
....+.....++.||||++.|.+| ++++|||+||+.||.+|+.. ..+||.|+..+...++.++
T Consensus 5 ~s~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 5 SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCCCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 344455677789999999999987 45699999999999999975 5789999999877666554
No 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=1.4e-11 Score=90.19 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=46.9
Q ss_pred CCCCCcccCcCccccc--cCCeecC--CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 12 VQIPYHFRCPISLELM--CDPVTVC--TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~--~dPv~~~--~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
..+.+++.||||.+.+ .|+++.+ |||+||+.|+.+||..+...||.|++++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3567889999999999 4667766 999999999999997667889999999875443
No 88
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.21 E-value=7.9e-10 Score=102.11 Aligned_cols=200 Identities=12% Similarity=0.052 Sum_probs=155.9
Q ss_pred hhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817 143 SSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV 222 (418)
Q Consensus 143 ~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L 222 (418)
...+.++.|+..|.++ ++.++..|+.+|..+.. .+.++.|+.+|++.++.+|..|+++|..+
T Consensus 20 ~~~~~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDH-------NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHTSCHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHcC-------CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3457899999999876 58899999999998752 34689999999999999999999999998
Q ss_pred HhcccchhhhhHhhchhhhHHHHHH-HhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817 223 LAGMRSQELRAQISNLDEIFEGVID-ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE 301 (418)
Q Consensus 223 ~~~s~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 301 (418)
...+.. + ...++.|.. ++.+. ++.++..++++|.++....... ...+++.|+.+|.+++..++.
T Consensus 82 ---~~~~~~---~---~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~ 146 (280)
T 1oyz_A 82 ---KICKKC---E---DNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRR 146 (280)
T ss_dssp ---CCCTTT---H---HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHH
T ss_pred ---cccccc---c---hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHH
Confidence 433221 1 224555553 45555 8999999999999997433211 224688999999998999999
Q ss_pred HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC
Q 014817 302 RALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT 381 (418)
Q Consensus 302 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 381 (418)
.++.+|..+.. .++++.|++++.+.+..++..|+++|..+...++ .+++.|+.+++++ +
T Consensus 147 ~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~ 205 (280)
T 1oyz_A 147 ATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-N 205 (280)
T ss_dssp HHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-C
T ss_pred HHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-C
Confidence 99999987653 3689999999999999999999999999864333 3567788888766 8
Q ss_pred HHHHHHHHHHHHHHH
Q 014817 382 DRAKRKAQLLLKLLR 396 (418)
Q Consensus 382 ~~~~~~A~~~L~~l~ 396 (418)
+.+|..|...|..+.
T Consensus 206 ~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998775
No 89
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.17 E-value=7e-12 Score=88.64 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=47.6
Q ss_pred CcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 16 YHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
+++.||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++...++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 467899999999998 88899999999999999986 6789999999987776553
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.12 E-value=6.1e-10 Score=115.95 Aligned_cols=195 Identities=15% Similarity=0.069 Sum_probs=151.3
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHH-HHhhcCCCChhhhHHHHHHHHHHccc--
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI-DILKNLSSYPRGLKVGIKALFALCLV-- 272 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~a~~aL~~L~~~-- 272 (418)
.|.++++.|++++++.|..|+++|.+| ..+...+..+.. .|+|.+++ .+|.+. +.+++..|+++|+||+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l---~~~~~~~~l~~~-~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANI---VQDAKCRKLLLR-EQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHH---TTSHHHHHHHHH-TTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHH---HcCcHHHHHHHH-cCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhcC
Confidence 467788889999999999999999999 677777777755 67777655 567766 899999999999999965
Q ss_pred cccHHHHHHcCchHHHHHHhcCCC---------------------cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHH
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFD---------------------KCDAERALATVELLCR-IPAGCAEFAEHALTVPLL 330 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L 330 (418)
.+.+..+++.|++++|..+|.... ..+.++++.+|.+|+. +++..+.+.. .++++.|
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l 187 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRL 187 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHH
Confidence 467889999999999999985310 0233567888999984 5566667777 4899999
Q ss_pred HHHHhc---CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHH--HHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 331 VKTILK---ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQL--LLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 331 v~~l~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+..|.+ ....++..|+.+|++++..+++..+.+.+.|....+ +..+..+ +...+..++++|.|+...
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHhhh
Confidence 999865 346789999999999999999999888887753332 2223344 555677889999998643
No 91
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.11 E-value=2.4e-09 Score=114.42 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=187.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhh--HHh--hcChHHHHHHHhhcccccccCCChhHHHHHHHHH
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRS--LIS--SHNVRAILSQVFFTNINVKTASSPELAHESLALL 177 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~--~i~--~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L 177 (418)
+-++.|++.+.+++ ...+..|+..|..++...+..-. .+. -.+.++.+++++.++ +.+++..|+.+|
T Consensus 128 ~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~vR~~A~~aL 198 (852)
T 4fdd_A 128 DLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-------SPKIRSHAVACV 198 (852)
T ss_dssp THHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-------CHHHHHHHHHHH
Confidence 45778888887763 33467899999998865332211 000 124567777777654 689999999999
Q ss_pred hcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh-hhHhhchhhhHHHHHHHhhcCCCCh
Q 014817 178 VMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL-RAQISNLDEIFEGVIDILKNLSSYP 256 (418)
Q Consensus 178 ~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~ 256 (418)
..+...... ...-.-.+.++.|...+.+++.++|..++++|..++ ....+. ...+ .++++.++.++.+. ++
T Consensus 199 ~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~--~~~~~~~~~~l---~~l~~~l~~~~~~~--~~ 270 (852)
T 4fdd_A 199 NQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL--EVRMDRLLPHM---HNIVEYMLQRTQDQ--DE 270 (852)
T ss_dssp HTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH--HHCHHHHGGGH---HHHHHHHHHHHTCS--SH
T ss_pred HHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHH---HHHHHHHHHHccCC--cH
Confidence 987754311 111112357888999999999999999999999995 222221 1222 35888899998887 88
Q ss_pred hhhHHHHHHHHHHccccccHHHHHH---cCchHHHHHHhc-----------C-----------CCcccHHHHHHHHHHHh
Q 014817 257 RGLKVGIKALFALCLVKQTRYKAVA---AGAAETLVDRLA-----------D-----------FDKCDAERALATVELLC 311 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~~n~~~i~~---~G~v~~Lv~lL~-----------~-----------~~~~~~~~a~~~L~~L~ 311 (418)
.++..|+..+.+++.....+. .+. ...+|.++..+. + .+-.++..+..+|..|+
T Consensus 271 ~vr~~a~e~l~~l~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 271 NVALEACEFWLTLAEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHTTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 999999999999987653332 222 245667777662 2 11235677888888887
Q ss_pred cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817 312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391 (418)
Q Consensus 312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 391 (418)
.... ..+.. ..++.+.+.+.+.+...++.|+.+|.+++.+..+.... .-.++++.|+..+.+. ++.+|..|+++
T Consensus 350 ~~~~--~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~ 423 (852)
T 4fdd_A 350 NVYR--DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWT 423 (852)
T ss_dssp HHHG--GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred Hhcc--HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 5332 12222 45677777777789999999999999999866543221 2256788888888666 99999999999
Q ss_pred HHHHHhh
Q 014817 392 LKLLRDS 398 (418)
Q Consensus 392 L~~l~~~ 398 (418)
|..++..
T Consensus 424 l~~l~~~ 430 (852)
T 4fdd_A 424 LSRYAHW 430 (852)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 9998875
No 92
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=84.55 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=47.2
Q ss_pred CcCCCCCCCcccCcCccccccCCeec---CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 8 LDLSVQIPYHFRCPISLELMCDPVTV---CTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.....++.++..||||++.|.+|..+ +|||+|++.||.+|+.. ..+||.|+.++..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 33445677789999999999988765 99999999999999986 4689999988753
No 93
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=3.8e-10 Score=80.90 Aligned_cols=53 Identities=19% Similarity=0.447 Sum_probs=44.3
Q ss_pred CCCCCcccCcCcccccc---CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 12 VQIPYHFRCPISLELMC---DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
.+...+..||||++.|. ++++++|||+|++.||.+|+.. ..+||.|+..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 45566789999999884 5678899999999999999986 56799999887643
No 94
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=1.6e-10 Score=82.64 Aligned_cols=47 Identities=28% Similarity=0.546 Sum_probs=41.8
Q ss_pred CcccCcCccccccCC-eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDP-VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.+..||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 356799999999998 67899999999999999986 578999998875
No 95
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.02 E-value=1.7e-09 Score=115.62 Aligned_cols=276 Identities=12% Similarity=0.032 Sum_probs=185.3
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
++.+++.+++. +..-|..|+++|..+....+..-.... .++++.|..++.++ +++++..|+.+|..++..
T Consensus 176 l~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~-------~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 176 IPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDE-------EPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 44555555544 334578899999887754332111011 25678888877665 588999999999988753
Q ss_pred hhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhh----------c
Q 014817 184 ETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILK----------N 251 (418)
Q Consensus 184 ~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~----------~ 251 (418)
..+. +..+ .+.++.++..+++.+++++..|+..+..+ ......+..+.. ....++.|+..+. .
T Consensus 246 ~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l---~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 246 RMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTL---AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp CHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH---TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred CHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 3221 2221 25788888888988999999999999999 554333332211 1357777877762 1
Q ss_pred C--C--------CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817 252 L--S--------SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA 321 (418)
Q Consensus 252 ~--~--------~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 321 (418)
+ . .+..++..|..+|..|+..... .++ ...++.+.+++.+.+..+++.++.+|..++........-.
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1 0 0234688899999999865432 112 2367778888888888899999999999996543221112
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
. .+.++.++..+.+.++.++..|+++|.+++...+.......-.++++.|+..+..+ ++.+|+.|+++|.++.+..
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHh
Confidence 2 36788999999889999999999999998862111001111235778888888666 8999999999999998764
No 96
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.5e-11 Score=85.63 Aligned_cols=53 Identities=19% Similarity=0.437 Sum_probs=46.5
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
..+.+++.||||.+.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 466778999999999999 99999999999999999884 788999998876443
No 97
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=7.1e-11 Score=80.84 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+++.||||.+.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 457889999999999999999999999999883 5679999988753
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=1.9e-10 Score=78.45 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=41.5
Q ss_pred CcccCcCccccccC----CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCD----PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.++.||||++.+.+ +++++|||+|++.||.+|+... .+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45779999999977 8888999999999999999874 88999998764
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.98 E-value=3.7e-09 Score=110.04 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=145.2
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSS-LLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
+.++++.|.++ +++.+..|+.+|.+|+.+. ..+..+...|+|..++. +|.+.+.++|..|+++|+||+. .
T Consensus 36 i~Pll~~L~S~-------~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~-~ 106 (684)
T 4gmo_A 36 ILPVLKDLKSP-------DAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ-E 106 (684)
T ss_dssp THHHHHHHSSS-------CCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHcCCC-------CHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-h
Confidence 45566778877 5788999999999999765 78888888888887655 6788899999999999999941 1
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhcCCC------------C-------hhhhHHHHHHHHHHcccc-ccHHHHHHcCchH
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKNLSS------------Y-------PRGLKVGIKALFALCLVK-QTRYKAVAAGAAE 286 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~-------~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~ 286 (418)
...+.+..+.. .|++++|..+++.... . .....+++.+|++||... +....+.+.|+++
T Consensus 107 ~g~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 107 EEADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred cCchHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 23577777766 6899999999864200 0 124456888999999654 4667788899999
Q ss_pred HHHHHhcCCC---cccHHHHHHHHHHHhcC-HhHHHHHHhccCChHH--HHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 287 TLVDRLADFD---KCDAERALATVELLCRI-PAGCAEFAEHALTVPL--LVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 287 ~Lv~lL~~~~---~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~--Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.|+.+|.+.+ .++...++.+|..|+.+ ++..+.+.++ |.... ++-.+...+...+..++++|+|+..
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~-~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD-QETHVYDVLLKLATGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC-CSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc-chHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence 9999986432 46888999999999965 5566666664 54322 2222334555567889999999853
No 100
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.6e-10 Score=94.36 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 15 PYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
++++.||||++.|.+| ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5678999999999999 99999999999999999986 5689999999876665443
No 101
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=3.6e-10 Score=85.71 Aligned_cols=50 Identities=20% Similarity=0.512 Sum_probs=43.9
Q ss_pred CCCcccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
..++..||||++.|.+ +++++|||.|++.||.+|+.. ..+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567789999999998 888999999999999999985 6789999988753
No 102
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.97 E-value=3.3e-10 Score=77.25 Aligned_cols=49 Identities=18% Similarity=0.523 Sum_probs=42.4
Q ss_pred CCCcccCcCccccccC---CeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCD---PVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~d---Pv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+.++..||||.+.|.+ ++.++ |||.|++.||.+|+.. ..+||.|+.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3456789999999999 88887 9999999999999976 678999998753
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=81.74 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCCcccCcCccccccCC---eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDP---VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
..++..||||++.|.++ +.++|||.|++.||.+|+.. ..+||.|+..+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34567899999999998 78899999999999999986 5789999988754
No 104
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=1e-09 Score=87.08 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCcccCcCccccccCCe------------------ecCCCCcccHHHHHHHHHc----CCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDPV------------------TVCTGQTYDRPSIESWVAT----GNTTCPVTRSPLT 63 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv------------------~~~~g~~~~r~~i~~~~~~----~~~~cp~~~~~l~ 63 (418)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.|+..+.
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 345678999999999886 7899999999999999963 3568999998875
No 105
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.90 E-value=2.2e-08 Score=98.65 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=183.6
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcC-hhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDS-DKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
+-++.|++.+.+++.+...+..|+..|..++... +..-.... ..+++.++.+|.+... +..++..|+.++.++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~-----~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP-----SNNVKLAATNALLNS 201 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHH
Confidence 4577888888775202234678999999988643 21111111 2467788888866521 478999999999875
Q ss_pred CCChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 181 PLTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 181 ~~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
...-.+.- ......-.++.+...+.+.+.+++..++.+|..++ ....+ ....+ . .++++.++..+++. ++.+
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~--~~~~~~~~~~~-~-~~l~~~~~~~~~~~--~~~v 275 (462)
T 1ibr_B 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYM-G-PALFAITIEAMKSD--IDEV 275 (462)
T ss_dssp TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHCGGGCTTTT-T-TTHHHHHHHHHHCS--SHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH-H-HHHHHHHHHHHcCC--chHH
Confidence 43221111 00001113666667777889999999999999995 22222 12222 1 16788888888877 8899
Q ss_pred hHHHHHHHHHHccccc------------------cHHHHHH---cCchHHHHHHhcCC-------CcccHHHHHHHHHHH
Q 014817 259 LKVGIKALFALCLVKQ------------------TRYKAVA---AGAAETLVDRLADF-------DKCDAERALATVELL 310 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~------------------n~~~i~~---~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L 310 (418)
+..|+..+.+++.... ....+++ ...+|.++..|... +..++..+..+|..|
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 9999999999875431 0111111 33567777777532 235677888888888
Q ss_pred hcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817 311 CRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE-RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQ 389 (418)
Q Consensus 311 ~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~ 389 (418)
+..-. ..+.. ..++.+.+.+.+.+...++.|+.+|..++.+.. +..... -..+++.|+..+.+. ++.+|..|+
T Consensus 356 ~~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~ 429 (462)
T 1ibr_B 356 ATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAA 429 (462)
T ss_dssp HHHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred HHhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 74322 12332 456677777777899999999999999997432 211111 156889999999776 899999999
Q ss_pred HHHHHHHhhCC
Q 014817 390 LLLKLLRDSWP 400 (418)
Q Consensus 390 ~~L~~l~~~~~ 400 (418)
++|..+...-.
T Consensus 430 ~~l~~~~~~~~ 440 (462)
T 1ibr_B 430 WTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHhcc
Confidence 99999998753
No 106
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=5.7e-10 Score=81.03 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+.+++.|+||.+.+++|++++|||+ ||+.|+.+| ..||.|++++.
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 3456899999999999999999999 999999998 67999998875
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.84 E-value=9.1e-08 Score=97.25 Aligned_cols=265 Identities=10% Similarity=0.039 Sum_probs=175.3
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
+.+++.++.. +...+..|+..|..++..-. ..+.......++|.+..++.+. ++.++..++.+|..++..
T Consensus 284 ~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-------~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 284 PAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-------NQHVKSALASVIMGLSPI 354 (588)
T ss_dssp HHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-------CHHHHHHHHTTGGGGHHH
T ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHH
Confidence 3344444433 22335667777777665322 1111111235677888888665 588999999988887632
Q ss_pred hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI 263 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~ 263 (418)
-. . .......++.+..+|++.++++|..++.+|..+. ..-. .... ....++.|..++.+. +..++..++
T Consensus 355 ~~--~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~---~~~~-~~~~--~~~~lp~l~~~~~d~--~~~vr~~~~ 423 (588)
T 1b3u_A 355 LG--K-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN---EVIG-IRQL--SQSLLPAIVELAEDA--KWRVRLAII 423 (588)
T ss_dssp HC--H-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH---HHSC-HHHH--HHHHHHHHHHHHTCS--SHHHHHHHH
T ss_pred hh--H-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH---HhcC-HHHH--HHHHHHHHHHHhcCC--CchHHHHHH
Confidence 10 1 1112346788899999889999999999999884 2111 1112 135788899988877 889999999
Q ss_pred HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHH
Q 014817 264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE 343 (418)
Q Consensus 264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~ 343 (418)
.+|..++..-... ......+|.++.+|.+.+..+++.++.+|..++..-.. .... ...+|.|+.++...+..++.
T Consensus 424 ~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~--~~llp~l~~~~~~~~~~~R~ 498 (588)
T 1b3u_A 424 EYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAH--ATIIPKVLAMSGDPNYLHRM 498 (588)
T ss_dssp HHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHH--HHTHHHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHH--HHHHHHHHHHhhCCCHHHHH
Confidence 9999987532211 11123578888888888888999999999888753221 1122 25678888777778888999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.++.++..++.. .........+++.|+..++.. ++.+|..+.++|..+...
T Consensus 499 ~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 499 TTLFCINVLSEV---CGQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHH
Confidence 999999888761 111223345777787777655 888999999999888764
No 108
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=4.3e-10 Score=81.99 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=40.5
Q ss_pred CCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+.+++.||||.+.+++|++++|||+ ||+.|+.+ ...||.|+.++..
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 34556799999999999999999999 99999964 3679999998764
No 109
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.80 E-value=2.4e-07 Score=94.12 Aligned_cols=253 Identities=12% Similarity=0.074 Sum_probs=169.9
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
+...|..|...|..++...+.. . ....+++.+..+..++ +..++..|+.+|..+.....+. .....
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-------~~~~R~~a~~~l~~~~~~~~~~----~~~~l 165 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-------WFTSRTSACGLFSVCYPRVSSA----VKAEL 165 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-------SHHHHHHHGGGHHHHTTTSCHH----HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHhcCHH----HHHHH
Confidence 3345778899999988654332 1 2233566666666544 5778888888887765432111 12345
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
++.+..++++.++.+|..++.+|..++ ..-... .. . ...++.|..++.+. ++.++..|+.+|..++......
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~---~~~~~~-~~-~-~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFA---KVLELD-NV-K-SEIIPMFSNLASDE--QDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHH---HTSCHH-HH-H-HTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH---HHhcHH-hH-H-HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCHH
Confidence 788888889999999999999999994 221111 11 1 45889999999887 8899999999999988643321
Q ss_pred HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~ 356 (418)
......+|.+..++.+.+..++..++.+|..++..-.. ... . ...++.+++++...++.++..|+.+|..++..-
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 22345788888888887788899999999988853211 112 2 256889999998899999999999999988722
Q ss_pred -HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817 357 -ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 357 -~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 397 (418)
++.+.......+++.+..++++. +..+|+.+++.|..+..
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP 353 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 11111112234556666666544 66777776666655543
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3.3e-09 Score=100.41 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=44.2
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
+..||||.+.+.+|++++|||+||+.||..|+......||.|+.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999999999999999999999999985578899999987643
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.74 E-value=3.6e-07 Score=93.53 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=177.0
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
+.+.+.+.+. +..-|..|+.++.++...+++ .+.+.+.++.|..+|.+. ++.|+..|+.+|..++...
T Consensus 124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 124 EPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-------NPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHhhC
Confidence 3455555544 334567899999999875543 333457889999999765 6899999999999988655
Q ss_pred hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
.+........+.+..|+..|...++-.+.....+|..+ ...++ .. ...+++.+..++++. ++.++..|++
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l---~~~~~--~~---~~~~l~~l~~~l~~~--~~~V~~ea~~ 261 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY---NPKDD--RE---AQSICERVTPRLSHA--NSAVVLSAVK 261 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS---CCCSH--HH---HHHHHHHHTTCSCSS--TTHHHHHHHH
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh---CCCCh--HH---HHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence 22211111245678888888888888888888888777 43222 11 135788888888887 8899999999
Q ss_pred HHHHHccc----cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-------------------HhHHHHHH
Q 014817 265 ALFALCLV----KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-------------------PAGCAEFA 321 (418)
Q Consensus 265 aL~~L~~~----~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-------------------~~~~~~i~ 321 (418)
++.++... .+.... +-..+.+.|+.++. ++.+++..++..|..++.. ...|....
T Consensus 262 ~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al 339 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKL 339 (591)
T ss_dssp HHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHH
Confidence 99999742 233232 23345677776654 5677788888887777630 01112111
Q ss_pred h------ccCChH----HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817 322 E------HALTVP----LLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391 (418)
Q Consensus 322 ~------~~g~i~----~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 391 (418)
+ ....+. .|...+...+...+..++++|..++...+... ...++.|+.++... .+.++..+...
T Consensus 340 ~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~ 413 (591)
T 2vgl_B 340 DIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVV 413 (591)
T ss_dssp HHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHccc-chHHHHHHHHH
Confidence 1 112233 44445555788999999999999998655433 33778899999776 66666667777
Q ss_pred HHHHHhhCC
Q 014817 392 LKLLRDSWP 400 (418)
Q Consensus 392 L~~l~~~~~ 400 (418)
++.+.+.++
T Consensus 414 l~~ii~~~p 422 (591)
T 2vgl_B 414 IRDIFRKYP 422 (591)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHCc
Confidence 777766544
No 112
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=74.96 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=40.0
Q ss_pred CcccCcCccccccC--------------Ceec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCD--------------PVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d--------------Pv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
++-.|+||++.|.+ ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999999988 4455 59999999999999986 5789999988753
No 113
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=2.8e-09 Score=86.88 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=48.1
Q ss_pred CCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817 15 PYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 70 (418)
++.+.||||++.+.+| ++++|||+||..||.+|++. ..+||.|+.++...++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 4567899999999998 88999999999999999986 6789999999887766554
No 114
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.71 E-value=9.3e-08 Score=97.90 Aligned_cols=260 Identities=10% Similarity=0.040 Sum_probs=176.6
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
....+++.+++.+ ...+.-+.-.+..++..+++.. .-++..+.+-|.++ ++.++..|+.+|+++..
T Consensus 50 ~~~~vi~l~~s~~--~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~-------n~~ir~~AL~~L~~i~~ 115 (591)
T 2vgl_B 50 LFPDVVNCMQTDN--LELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP-------NPLIRALAVRTMGCIRV 115 (591)
T ss_dssp GHHHHHHTTSSSC--HHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS-------SHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC-------CHHHHHHHHHHHHcCCh
Confidence 3566777665543 3333444555556655443322 11345566566555 68899999999999863
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a 262 (418)
. +.- ...++.+.+.|.+.++.+|..|+.+|..+. ..+++ .+ ...++++.|..+|.+. ++.++.+|
T Consensus 116 ~--~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~--~~~p~---~~-~~~~~~~~l~~lL~d~--d~~V~~~A 180 (591)
T 2vgl_B 116 D--KIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLH--DINAQ---MV-EDQGFLDSLRDLIADS--NPMVVANA 180 (591)
T ss_dssp G--GGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHH--HSSCC---CH-HHHHHHHHHHHTTSCS--CHHHHHHH
T ss_pred H--HHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHH--hhChh---hc-ccccHHHHHHHHhCCC--ChhHHHHH
Confidence 2 222 234678999999999999999999999994 22222 23 2257899999999987 89999999
Q ss_pred HHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhcCChH
Q 014817 263 IKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 263 ~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
+.+|..++...... ..-...+.+..|+..+.+.++-.+...+.+|..++..+ .... ..++.+...+.+.++.
T Consensus 181 ~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~------~~l~~l~~~l~~~~~~ 254 (591)
T 2vgl_B 181 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ------SICERVTPRLSHANSA 254 (591)
T ss_dssp HHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH------HHHHHHTTCSCSSTTH
T ss_pred HHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH------HHHHHHHHHHcCCChH
Confidence 99999999765422 01112345677788777777777777888887777432 2222 3456677777778999
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 341 ATEYAAGALAALCSA---SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 341 ~~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
+...|++++..+... +++..+.+ -..+.+.|+.++ +. ++.+|..|...|..+....+
T Consensus 255 V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 255 VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhCh
Confidence 999999999998742 33333322 234557777655 44 89999999999999988654
No 115
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=4.4e-09 Score=80.24 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=47.6
Q ss_pred CcccCcCccccccCCeec---CCCCcccHHHHHHHHHc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 014817 16 YHFRCPISLELMCDPVTV---CTGQTYDRPSIESWVAT----G---NTTCPV--TRSP--LTDFTLIPNHTLRRLIQDWC 81 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~----~---~~~cp~--~~~~--l~~~~l~~n~~L~~~i~~~~ 81 (418)
+.+.||||.+.+.+|+++ +|||+||+.|+..|+.. + ...||. |+.. +.+..+. +....+++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 578899999999999875 69999999999999863 3 236999 9877 4432221 222245556665
Q ss_pred Hh
Q 014817 82 VA 83 (418)
Q Consensus 82 ~~ 83 (418)
..
T Consensus 83 ~~ 84 (94)
T 1wim_A 83 KL 84 (94)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.60 E-value=2.1e-08 Score=70.36 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=42.4
Q ss_pred CCcccCcCccccccCCeec--CCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTV--CTGQT-YDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+++..|+||.+-.+|++++ +|||. ||..|+.+|+.. ...||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3456899999999999988 99999 899999999975 578999998874
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.59 E-value=5.1e-06 Score=85.38 Aligned_cols=253 Identities=13% Similarity=0.050 Sum_probs=169.8
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE 184 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~ 184 (418)
+.+.+.|.+.+ ..-|..|+.++.++...+++.- .+.++.+..+|.+. ++.|+..|+.+|..++..+
T Consensus 145 ~~l~~~L~~~~--~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~-------d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 145 GEVEKLLKTSN--SYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK-------NHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHHSCC--HHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-------CHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-------CHhHHHHHHHHHHHHHHhC
Confidence 44445555443 2345667777777766554322 14566666677654 6788899999888887665
Q ss_pred hHHHhhcccCCchHHHHHHhcC---------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817 185 TECMEIASDADKITSLSSLLFH---------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL 249 (418)
Q Consensus 185 ~~~~~~i~~~g~i~~Lv~~L~~---------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL 249 (418)
.+....+ ...++.++.+|.+ .++-.+...+.+|..+ ...+.. .. ...++.|..++
T Consensus 211 ~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l---~~~~~~---~~--~~~~~~L~~l~ 280 (618)
T 1w63_A 211 PDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL---GRNDDD---SS--EAMNDILAQVA 280 (618)
T ss_dssp HHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH---TTTCHH---HH--HTTHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh---CCCCHH---HH--HHHHHHHHHHH
Confidence 3322222 2567888887753 3788888889999998 443221 11 22455566665
Q ss_pred hcCC----CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccC
Q 014817 250 KNLS----SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHAL 325 (418)
Q Consensus 250 ~~~~----~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 325 (418)
.... .+..+...|++++.++..... +. ..+++.|..+|.+.+.+++..++.+|..++.... .++. .
T Consensus 281 ~~~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~ 350 (618)
T 1w63_A 281 TNTETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--R 350 (618)
T ss_dssp HTSCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--G
T ss_pred hccccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--H
Confidence 4210 034788888999988755322 22 2467889999998889999999999998885322 2232 3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
....++.++.+.+..++..|+.+|..++..+. ... ++..|+..+... +...|+.+...+..++..+
T Consensus 351 ~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 351 HRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 46778888888899999999999999997321 122 457788888776 8899999999999998864
No 118
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.59 E-value=5.4e-06 Score=88.36 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh--cChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS--HNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~ 179 (418)
+-++.+++.+.+++.+...+..|+..|..++..-.. +.+.. ..+++.+...+.++.. +.+++..|+.+|..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~-----~~~vr~~a~~~l~~ 200 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEP-----SNNVKLAATNALLN 200 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCS-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHH
Confidence 356778888876520223467789999988864211 11111 3456667777765421 47889999999887
Q ss_pred CCCChhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817 180 FPLTETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQISNLDEIFEGVIDILKNLSSYPR 257 (418)
Q Consensus 180 l~~~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 257 (418)
+...-... .........++.+...+.+.+.+++..++.+|..++ .... .....+ . ..+++.++..+.+. ++.
T Consensus 201 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~--~~~~~~~~~~~-~-~~l~~~~~~~~~~~--~~~ 274 (876)
T 1qgr_A 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYM-G-PALFAITIEAMKSD--IDE 274 (876)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSGGGCHHHH-T-TTHHHHHHHHHTCS--SHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HHhHHHHHHHH-H-HHHHHHHHHHhcCC--chH
Confidence 65321111 111111125777777888888999999999999995 2222 222223 1 25788888888776 788
Q ss_pred hhHHHHHHHHHHccccc---------------------cHHHHHHcCchHHHHHHhcC-------CCcccHHHHHHHHHH
Q 014817 258 GLKVGIKALFALCLVKQ---------------------TRYKAVAAGAAETLVDRLAD-------FDKCDAERALATVEL 309 (418)
Q Consensus 258 ~~~~a~~aL~~L~~~~~---------------------n~~~i~~~G~v~~Lv~lL~~-------~~~~~~~~a~~~L~~ 309 (418)
++..|+..+.+++.... ....-.-...++.+++.|.. .+..++..+..+|..
T Consensus 275 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHH
Confidence 99999999998875421 00000013357777787753 234567788888888
Q ss_pred HhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHhcChHHHHHHHHhhCCCHHHHHHH
Q 014817 310 LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE-RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA 388 (418)
Q Consensus 310 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A 388 (418)
++..-. ..+.. ..++.+...+.+.+..+++.|+.+|..++.+.. +..... -..+++.|+..+.+. ++.+|..|
T Consensus 355 l~~~~~--~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~-~~~vr~~a 428 (876)
T 1qgr_A 355 LATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTA 428 (876)
T ss_dssp HHHHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHCc--HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHH
Confidence 875322 12222 455666666677889999999999999998443 322222 245788888888666 89999999
Q ss_pred HHHHHHHHhhCC
Q 014817 389 QLLLKLLRDSWP 400 (418)
Q Consensus 389 ~~~L~~l~~~~~ 400 (418)
+++|..+.....
T Consensus 429 ~~~l~~~~~~~~ 440 (876)
T 1qgr_A 429 AWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHHhCc
Confidence 999999998743
No 119
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.56 E-value=2.7e-08 Score=69.54 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=41.9
Q ss_pred CcccCcCccccccCCeec--CCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCDPVTV--CTGQT-YDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 16 ~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.+..|+||.+-.+|++++ +|||. ||+.|+.+|+.. ...||.|++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 356799999999999988 99998 999999999876 578999998874
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.56 E-value=3.2e-06 Score=90.12 Aligned_cols=277 Identities=12% Similarity=0.048 Sum_probs=175.6
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
+.+++.+...+.+...+..|++.+..++..-..+- .......+++.+...+.+. +.+++..++.+|..+...
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-------~~~vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-------DTRVRVAALQNLVKIMSL 247 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHH
Confidence 34455554442223446788888888765322211 1111112566666666544 578999999988877642
Q ss_pred hhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh----------------h---hHhh-chhhhH
Q 014817 184 ETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL----------------R---AQIS-NLDEIF 242 (418)
Q Consensus 184 ~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~----------------~---~~i~-~~~g~i 242 (418)
.... ... .....++.++..+.+.+++++..++..+..++ ..... + ..+. ....++
T Consensus 248 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 248 YYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVC---DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp SGGGCHHH-HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 2111 111 12367888888888888999999999999884 32100 0 0000 003467
Q ss_pred HHHHHHhhcC-----CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH--h
Q 014817 243 EGVIDILKNL-----SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP--A 315 (418)
Q Consensus 243 ~~Lv~lL~~~-----~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~ 315 (418)
+.++..+... +.+..++..|..+|..++..... .++ ..+++.+...+.+.+..+++.++.+|..++... +
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 7788887532 11457888999999999765331 112 235666677777777888999999999999642 3
Q ss_pred HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 316 GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ-RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 316 ~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
....... ..++.++..+.+.++.++..|+++|.+++...+... ..-.-..+++.|+..+.+ +++++..|+++|..
T Consensus 401 ~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~ 476 (876)
T 1qgr_A 401 QLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSS 476 (876)
T ss_dssp HHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 2333333 578899999988999999999999999997322100 000012356677777744 48889999999999
Q ss_pred HHhhC
Q 014817 395 LRDSW 399 (418)
Q Consensus 395 l~~~~ 399 (418)
+....
T Consensus 477 l~~~~ 481 (876)
T 1qgr_A 477 LAEAA 481 (876)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98763
No 121
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.51 E-value=2.5e-06 Score=90.81 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=167.0
Q ss_pred chhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc----
Q 014817 117 TYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA---- 191 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i---- 191 (418)
+...+..|+..+..++.... ..-.... ..+++.|+..+.+. ++.++..++++|..++..- ...+
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~~---~~~~~~~~ 450 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-------SLQVKETTAWCIGRIADSV---AESIDPQQ 450 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHH---GGGSCTTT
T ss_pred ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHHh---hhhcCCHH
Confidence 44567889999999886532 1111112 24678888888665 6889999999888776322 1111
Q ss_pred ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc---chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHH
Q 014817 192 SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR---SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFA 268 (418)
Q Consensus 192 ~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~ 268 (418)
.-...++.|+..|++. +.++..++++|.+++.... .+.....+ ..+++.|+.++.+...++.++..++.+|..
T Consensus 451 ~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 451 HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 1234678888888765 8999999999999942111 01122222 357889999998652147889999999999
Q ss_pred Hcccccc-HHHHHHcCchHHHHHHhcCC---------------CcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHH
Q 014817 269 LCLVKQT-RYKAVAAGAAETLVDRLADF---------------DKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLV 331 (418)
Q Consensus 269 L~~~~~n-~~~i~~~G~v~~Lv~lL~~~---------------~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv 331 (418)
+...... ....+. ..+|.+++.|... ...++..++.+|..++.. +....... ...++.++
T Consensus 527 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred HHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence 9865432 222222 3677777777531 234556788888877732 11111111 13566777
Q ss_pred HHHhcCCh-HHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 332 KTILKISD-RATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 332 ~~l~~~~~-~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+.+...+. .+++.++.++..++... ......+ ..+++.|+..+... +..++..|..++..+.+.
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQV-DSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence 77777666 88999999999888621 1122111 23778888888555 778999999998888765
No 122
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.48 E-value=1.5e-05 Score=81.90 Aligned_cols=256 Identities=9% Similarity=-0.021 Sum_probs=166.4
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
+..+-+.+++++. ..+..++..|-.+....... ..+....++++.+. +.+.+....-.+..++..
T Consensus 36 ~~~ir~~l~~~~~--~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~-------~~~~Krl~Yl~~~~~~~~ 100 (618)
T 1w63_A 36 CAAIRSSFREEDN--TYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQ-------KFTDKRIGYLGAMLLLDE 100 (618)
T ss_dssp HHHHHHHHTTTCT--TTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSS-------SHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCH--HHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCC-------chHHHHHHHHHHHHHhCC
Confidence 3445556655532 33556666666543322111 23456666777765 466666666666666655
Q ss_pred hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI 263 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~ 263 (418)
+++... -++..|.+-|++.++.+|..|+.+|.++ .. + .+. ..+++.+..+|.+. ++.+++.|+
T Consensus 101 ~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~-~----~~~--~~l~~~l~~~L~~~--~~~VRk~A~ 163 (618)
T 1w63_A 101 RQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCM---GS-S----EMC--RDLAGEVEKLLKTS--NSYLRKKAA 163 (618)
T ss_dssp CHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHH---CC-H----HHH--HHHHHHHHHHHHSC--CHHHHHHHH
T ss_pred CcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhc---CC-H----HHH--HHHHHHHHHHHcCC--CHHHHHHHH
Confidence 433222 2467788888899999999999999999 42 2 232 34788899999988 899999999
Q ss_pred HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-------
Q 014817 264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK------- 336 (418)
Q Consensus 264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~------- 336 (418)
.++.++...... ++ .+.++.+..+|.+.+..++..|+.+|..++..+........ ..++.++++|..
T Consensus 164 ~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~ 237 (618)
T 1w63_A 164 LCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYS 237 (618)
T ss_dssp HHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCC
Confidence 999999864332 12 26778888888888889999999999999876543222222 567778777653
Q ss_pred --------CChHHHHHHHHHHHHHhcCCHHHHHH-------HH------------------------------hcChHHH
Q 014817 337 --------ISDRATEYAAGALAALCSASERCQRD-------AV------------------------------SAGVLTQ 371 (418)
Q Consensus 337 --------~~~~~~~~A~~~L~~l~~~~~~~~~~-------~~------------------------------~~g~i~~ 371 (418)
.++-.|-..+.+|..++..+++.... +. ...++..
T Consensus 238 ~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~ 317 (618)
T 1w63_A 238 PEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINI 317 (618)
T ss_dssp TTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 36777777777777777655432111 00 0124566
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 372 LLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 372 L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
|..++.+. ++.+|..|...|..+...
T Consensus 318 L~~~L~~~-d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 318 LGRFLLNN-DKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHHHTCS-STTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCchHHHHHHHHHHHHhh
Confidence 66666555 677777777777776654
No 123
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.48 E-value=9.6e-08 Score=74.00 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=39.7
Q ss_pred cccCcCccccccCC------------------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDP------------------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+-.|+||++.|.+| ++++|||.|.+.||.+|+.. +.+||.|+..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 34799999999987 34699999999999999986 788999998754
No 124
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=2.6e-08 Score=73.02 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+.++..|+||.+.+++||+++|||. ||+.|+.+|+ .||.|+.++..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 34456789999999999999999999 9999998873 79999988753
No 125
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.9e-07 Score=66.22 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=41.6
Q ss_pred CCCCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 11 SVQIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
+..-.++..|+||++..+++++++|||. ||..|+.. ...||.|++++..
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3444557899999999999999999999 99999984 4779999988753
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.46 E-value=8.7e-06 Score=79.86 Aligned_cols=237 Identities=13% Similarity=0.066 Sum_probs=150.8
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIV 222 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L 222 (418)
+.++.|+..+.++.. ++.+++.|+.+|..++... .+.-... ....++.++..|.+. +..+|..|++++.++
T Consensus 128 ~ll~~L~~~l~~~~~-----~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 128 ELIPQLVANVTNPNS-----TEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp THHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 467777777765410 3678899999888776321 0110011 134678888999887 799999999999997
Q ss_pred Hhcccchhhhh-HhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccH
Q 014817 223 LAGMRSQELRA-QISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDA 300 (418)
Q Consensus 223 ~~~s~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~ 300 (418)
+ ....+.-. .... .-+++.|...+.+. ++.++..++.+|..++...... ...+..+.++.++..+.+.+..++
T Consensus 202 ~--~~~~~~~~~~~~~-~~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 202 L--EFTKANFDKESER-HFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp T--TTTHHHHTSHHHH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred H--HHHHHhhhhhHHH-HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 3 22121111 1101 12466677777666 7899999999999998643211 111122677788888888788889
Q ss_pred HHHHHHHHHHhcCHhHHHH------------------HHh--ccCChHHHHHHHhc-------CChHHHHHHHHHHHHHh
Q 014817 301 ERALATVELLCRIPAGCAE------------------FAE--HALTVPLLVKTILK-------ISDRATEYAAGALAALC 353 (418)
Q Consensus 301 ~~a~~~L~~L~~~~~~~~~------------------i~~--~~g~i~~Lv~~l~~-------~~~~~~~~A~~~L~~l~ 353 (418)
..++.++..++........ +.. ....+|.+++.|.. .+...+..|..+|..++
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 9999999888854311111 110 01345566666643 23467889999999988
Q ss_pred cCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 354 SASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 354 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..-++ .+. ..+++.+...+++. +...|+.|..+|..+...
T Consensus 357 ~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 357 TCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSS
T ss_pred HhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcC
Confidence 72221 111 23566666677665 899999999999999863
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.37 E-value=6.1e-08 Score=91.33 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=40.2
Q ss_pred CCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.+++.||||.+.+.+||+++|||+ ||+.|+..| ..||.|+.++.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 456899999999999999999999 999999988 67999998875
No 128
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.36 E-value=9.5e-07 Score=98.09 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
+..+..+++.+.+++.+ .|..|...|.+....+...-..-....+++.|++.|.+. +++++..|+.+|..+
T Consensus 5 ~~~l~~lL~~l~s~d~~--~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-------~~~vR~~A~~~L~~l 75 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGPL 75 (1230)
T ss_dssp CHHHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCCCHh--HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Confidence 35688899999887543 467888888877654311000011124678888888754 689999999999887
Q ss_pred CCChhH-HHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-----hhhHhhchhhhHHHHHHHhhc-CC
Q 014817 181 PLTETE-CMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-----LRAQISNLDEIFEGVIDILKN-LS 253 (418)
Q Consensus 181 ~~~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-----~~~~i~~~~g~i~~Lv~lL~~-~~ 253 (418)
+....+ .. ...++.|+..|.+.+..+|..++.+|..++. ..... ..... ...+++.|+..+.+ .
T Consensus 76 ~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~-~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~- 146 (1230)
T 1u6g_C 76 VSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG-ELPPASSGSALAANV--CKKITGRLTSAIAKQE- 146 (1230)
T ss_dssp HTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH-HCC-----CCTHHHH--HHHHHHHHHHHHSCCS-
T ss_pred HHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-hCCCcccccchHHHH--HHHHHHHHHHHHcCCC-
Confidence 643212 12 2357788888888888999999999999952 11111 01111 24589999999984 5
Q ss_pred CChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHH
Q 014817 254 SYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVK 332 (418)
Q Consensus 254 ~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ 332 (418)
++.++..|+.+|..++..... -.. .-...++.|+..|.+.+..++..++.+|..++..... .+. ...++.+++
T Consensus 147 -~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~ 220 (1230)
T 1u6g_C 147 -DVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLS 220 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHH
Confidence 789999999999999843211 000 0133566777777777788999999999999864322 122 256888888
Q ss_pred HHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 333 TILKI-SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 333 ~l~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.+... +...+..++.++..++...+..... .-..+++.++..++.. ++.+|+.|..++..+.....
T Consensus 221 ~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 221 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred HhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence 88764 3456778888888887622221000 1146888888888765 88899999999998887643
No 129
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.34 E-value=1.9e-05 Score=83.99 Aligned_cols=278 Identities=13% Similarity=0.127 Sum_probs=174.7
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhh--hHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNR--SLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
+-++.|++.+.++. +...+..|+..+..++..-. ..+ ... ...+++.+...+.+... +.+++..|+.+|.
T Consensus 134 ~ll~~L~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~-----~~~vr~~al~~l~ 206 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTET-----SKAVRLAALNALA 206 (861)
T ss_dssp HHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHH
Confidence 45677777776641 23346778888888876422 111 001 12356666777765421 4789999999988
Q ss_pred cCCCC-hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817 179 MFPLT-ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYP 256 (418)
Q Consensus 179 ~l~~~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~ 256 (418)
.+... .............++.|...+.+++.++|..++.+|..++ ....+ ....+. ..+++.+...+.+. +.
T Consensus 207 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~l~--~~l~~~~~~~~~~~--~~ 280 (861)
T 2bpt_A 207 DSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM--SKYYTFMKPYME--QALYALTIATMKSP--ND 280 (861)
T ss_dssp HHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH--HHHGGGCHHHHH--HTHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHcCC--cH
Confidence 65311 1010000001235677777888889999999999999995 22221 112221 14677777777776 78
Q ss_pred hhhHHHHHHHHHHcccccc------------------HHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHh
Q 014817 257 RGLKVGIKALFALCLVKQT------------------RYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLC 311 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~~n------------------~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~ 311 (418)
.++..|+..+..++..... ....+ ...+|.++..|... +..++..+..+|..++
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~ 359 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence 9999999999998765311 01111 45778888888642 1246677888888887
Q ss_pred cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817 312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL 390 (418)
Q Consensus 312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~ 390 (418)
..-. ..+.. ..++.+.+.+.+.+...++.|+.+|..++.+. ++...... ..+++.|+..+... ++.+|..+.+
T Consensus 360 ~~~~--~~~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~ 433 (861)
T 2bpt_A 360 QNCG--NHILE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAW 433 (861)
T ss_dssp HHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred HHcc--HhHHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 5321 11111 34455556666678899999999999999753 23222222 24677777777666 8999999999
Q ss_pred HHHHHHhhC
Q 014817 391 LLKLLRDSW 399 (418)
Q Consensus 391 ~L~~l~~~~ 399 (418)
+|..+...-
T Consensus 434 ~l~~l~~~~ 442 (861)
T 2bpt_A 434 CIGRIADSV 442 (861)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888763
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=7.1e-06 Score=73.70 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=136.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh-cCCCChhhhHHHHHHHHHHccccccH
Q 014817 198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK-NLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
+.+.+.+.+.+...|..|+..|..++. ..+.... .....+++.|...+. +. +..++..|+.+|..|+..-...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~--~~~~~~~--~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLT--DHPKLEN--GEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHH--HCSSBCC--CCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHc--cCCCCCC--CCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhh
Confidence 347788889999999999999999952 2122111 112357888999995 76 8999999999999999643221
Q ss_pred HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-C
Q 014817 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-A 355 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~ 355 (418)
..-.-.-.+|.|+..+.+.+..+++.+..+|..++..... . ..++.+...+.+.++.+++.++..|..+.. .
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1112234789999999888888999999999998864321 1 346678888888899999999999999654 3
Q ss_pred CHHH--HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 356 SERC--QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 356 ~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.++. ...+ ..+++.|+..+... +.++|..|..++..+...-
T Consensus 165 ~~~~~~~~~l--~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 165 QPTALNKKLL--KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CGGGCCHHHH--HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2321 1111 24788888888666 9999999999999988754
No 131
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.30 E-value=2.6e-07 Score=74.87 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=85.6
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
...++.|+.+|.++ ++.++..|+.+|..+.. ..++.|+..|++.++.+|..|+++|.++
T Consensus 11 ~~~~~~l~~~L~~~-------~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~-- 69 (131)
T 1te4_A 11 SSGLVPRGSHMADE-------NKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNF-- 69 (131)
T ss_dssp ----------CCSS-------CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGG--
T ss_pred cccHHHHHHHhcCC-------CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhc--
Confidence 34567788888766 46777777777765531 1268899999999999999999998888
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
.. ..+++.|+.+|++. ++.++..|+++|.++.. ..+++.|+.+|.+.+..++..++
T Consensus 70 -~~-----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~ 125 (131)
T 1te4_A 70 -QD-----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAV 125 (131)
T ss_dssp -CS-----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHH
T ss_pred -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 31 34688899999887 89999999999998852 34688899999887888888888
Q ss_pred HHHHH
Q 014817 305 ATVEL 309 (418)
Q Consensus 305 ~~L~~ 309 (418)
.+|..
T Consensus 126 ~aL~~ 130 (131)
T 1te4_A 126 NYLET 130 (131)
T ss_dssp HHGGG
T ss_pred HHHHh
Confidence 77754
No 132
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.28 E-value=4.6e-06 Score=72.54 Aligned_cols=220 Identities=9% Similarity=0.029 Sum_probs=157.5
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 225 (418)
.+..|..+|... |+.++.+|+.+|..+-..- ...+..+. ...++.++.++++.+..+...|..+|..|.
T Consensus 34 ~l~~L~~LL~dk-------D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LL-- 103 (265)
T 3b2a_A 34 ALFLILELAGED-------DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLV-- 103 (265)
T ss_dssp HHHHHHHHTTSS-------CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcc-------chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH--
Confidence 567788899666 6899999999999776441 12333333 346899999999999999999999999996
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALA 305 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~ 305 (418)
...+-..... ..++.+|..++.++ ++-....|+..|..|......+. ++..+.+++.+.+.+++..++.
T Consensus 104 e~vpL~~~~y---~Kl~~aL~dlik~~--~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 KDVPMGSKTF---LKAAKTLVSLLESP--DDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp TTCCBCHHHH---HHHHHHHHHHTTSC--CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCSSHHHHHHHHH
T ss_pred cCCCCCHHHH---HHHHHHHHHHhcCC--CchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCCChhHHHHHHH
Confidence 3333333344 23778899999988 89999999999999943333333 5677889998889999999999
Q ss_pred HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH------h-h
Q 014817 306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV------Q-S 378 (418)
Q Consensus 306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll------~-~ 378 (418)
+|.+++...+....+ .+.+.-+-.++.+.++.+.+.|+.+|..+.... - . +.+++.+..++ - -
T Consensus 173 ~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-i-~-----~~~~~~~~~~~~~v~~l~~~ 242 (265)
T 3b2a_A 173 LFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFP-L-L-----ENVKIELLKISRIVDGLVYR 242 (265)
T ss_dssp HHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-C-C-----SCCHHHHHHHHHHHHHGGGC
T ss_pred HHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-c-c-----HhHHHHHHHHHHHHHHHHHh
Confidence 999999644322211 123334556677899999999999999988731 1 0 22333333332 2 3
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 014817 379 DCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 379 ~~~~~~~~~A~~~L~~l~~ 397 (418)
.|.+..+.+|..+-..+-.
T Consensus 243 ~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 243 EGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHH
Confidence 4589999999887766644
No 133
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.9e-06 Score=61.99 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCcccCcCccccc--cCCeecCCC-----CcccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELM--CDPVTVCTG-----QTYDRPSIESWVAT-GNTTCPVTRSPLTD 64 (418)
Q Consensus 15 ~~~~~Cpi~~~~~--~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~cp~~~~~l~~ 64 (418)
.++..|+||++.+ .+|++++|+ |.|-+.||.+|+.. +..+||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456799999877 579999996 99999999999975 34689999988753
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.18 E-value=7e-06 Score=73.74 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=130.4
Q ss_pred HHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccc
Q 014817 150 ILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRS 228 (418)
Q Consensus 150 ~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~ 228 (418)
.+.+.+.+. +...+..|+..|..+.......... .-...++.|...|. +.+..++..|+.+|..|+. ...
T Consensus 19 ~l~~~l~s~-------~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~-~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEK-------KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAK-GLA 89 (242)
T ss_dssp THHHHHTCS-------SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HHG
T ss_pred HHHhhhccC-------CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHh
Confidence 466666655 5788888888887665321010000 01245777888884 8899999999999999952 112
Q ss_pred hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817 229 QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE 308 (418)
Q Consensus 229 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~ 308 (418)
+.....+ ..+++.|+..+.+. ++.++..|..+|.++...... ...++.|...|.+.+..++..++..|.
T Consensus 90 ~~~~~~~---~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 90 KRFSNYA---SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp GGGHHHH---HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hhHHHHH---HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2222222 34899999999988 899999999999999875431 126778888888888899999999999
Q ss_pred HHhcC--Hh--HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 309 LLCRI--PA--GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 309 ~L~~~--~~--~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.+... ++ ....+ . ..++.|++.+...+..++..|..++..++.
T Consensus 159 ~~l~~~~~~~~~~~~l-~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL-K--LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHTTCCGGGCCHHHH-H--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH-H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 96533 22 12222 2 468899999988999999999999999886
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=1.8e-05 Score=68.84 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=148.4
Q ss_pred cccHHHHHHHHHHHHhccCCCcccCCCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcC-hhhhhHHhhcC
Q 014817 68 IPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDS-DKNRSLISSHN 146 (418)
Q Consensus 68 ~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g 146 (418)
+.-..+++-+..|.-....... ..+++.+..|++.|... +...+..|+..|.++.+.- ...+...+ ..
T Consensus 7 i~~~~lre~L~sWkiK~a~ela--------~~~e~~l~~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~-e~ 75 (265)
T 3b2a_A 7 ISKTELRELVLSWQILDAVSLA--------LEDKRALFLILELAGED--DETTRLRAFVALGEILKRADSDLRMMVL-ER 75 (265)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHH--------HHCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HH
T ss_pred ccHHHHHHHHHHhhHHHHHHHH--------HhchhHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHH-HH
Confidence 3335677777888654211000 01334566677777554 3345688999999998873 33343344 45
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
.++.++.++.+. |..+.-.|+.+|..|-.+.+-..+.+. -.+..|..++.++++-.+.+++..+..+ .
T Consensus 76 ~Ld~iI~llk~~-------dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgkl---k 143 (265)
T 3b2a_A 76 HLDVFINALSQE-------NEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKL---Q 143 (265)
T ss_dssp HHHHHHHTCCST-------THHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHhcc-------chhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcC---C
Confidence 799999999777 578999999988866544321122221 2357888899999999999999999998 3
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT 306 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~ 306 (418)
.... ..+++..|..++.+. +..++.+|+++|.+++...++..- -.+++.-+-.+|.+.|+.+++.|+.+
T Consensus 144 v~~~-------~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~ 212 (265)
T 3b2a_A 144 PLED-------SKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDV 212 (265)
T ss_dssp BSCC-------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHH
T ss_pred cccc-------hHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3222 246778888889776 899999999999999976543321 13456667788999999999999999
Q ss_pred HHHHhcCH
Q 014817 307 VELLCRIP 314 (418)
Q Consensus 307 L~~L~~~~ 314 (418)
|..+...+
T Consensus 213 Le~ils~p 220 (265)
T 3b2a_A 213 LEKALSFP 220 (265)
T ss_dssp HHHHTTSC
T ss_pred HHHHHcCc
Confidence 99988753
No 136
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.11 E-value=0.00018 Score=73.84 Aligned_cols=257 Identities=12% Similarity=0.110 Sum_probs=167.2
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh
Q 014817 106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET 185 (418)
Q Consensus 106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 185 (418)
.+.+.|.+.+.+..-|..|+-++.++...+++ .+...+.++.|.++|.+. ++.|+..|+.+|..++..+.
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLNDQ-------HLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhCCC-------CccHHHHHHHHHHHHHHhCh
Confidence 34444432333334456788888888765543 222248899999999755 68899999999988765332
Q ss_pred HHHhhcccCCchHHHHHHhc----CC-------------CHHHHHHHHHHHHHHHhcccc--hhhhhHhhchhhhHHHHH
Q 014817 186 ECMEIASDADKITSLSSLLF----HS-------------SIEVRVNSAALIEIVLAGMRS--QELRAQISNLDEIFEGVI 246 (418)
Q Consensus 186 ~~~~~i~~~g~i~~Lv~~L~----~~-------------~~~~~~~a~~~L~~L~~~s~~--~~~~~~i~~~~g~i~~Lv 246 (418)
+ .+ ...++.+++.|. .+ ++-.+.....+|..+ ... ++.+..+ ...++.++
T Consensus 220 ~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~---~~~~d~~~~~~l---~~~L~~il 288 (621)
T 2vgl_A 220 E---EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY---PPPEDPAVRGRL---TECLETIL 288 (621)
T ss_dssp H---HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS---SSCSSHHHHHHH---HHHHHHHH
T ss_pred H---HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh---CCCCCHHHHHHH---HHHHHHHH
Confidence 2 11 133455554443 22 466777777777777 432 2333333 12444444
Q ss_pred HHhhcCC-------CCh--hhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH
Q 014817 247 DILKNLS-------SYP--RGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGC 317 (418)
Q Consensus 247 ~lL~~~~-------~~~--~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 317 (418)
..+.+.. .+. .+.-.++.++..+....+... .++..|..+|.+.+.+++-.++..|..++......
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 4332210 022 677788899988864322222 36778889998888999999999999998654222
Q ss_pred HHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817 318 AEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396 (418)
Q Consensus 318 ~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~ 396 (418)
..+ . .....++..+. +.+..++..|+.+|..++. +.+... ++..|...+... +...++.+...+..++
T Consensus 364 ~~~-~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 364 EAV-K--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILA 432 (621)
T ss_dssp HHH-H--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred HHH-H--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 223 2 45778888888 8899999999999999986 444443 667788888766 8888888888888887
Q ss_pred hhC
Q 014817 397 DSW 399 (418)
Q Consensus 397 ~~~ 399 (418)
..+
T Consensus 433 ~k~ 435 (621)
T 2vgl_A 433 EKY 435 (621)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 137
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.10 E-value=3.9e-07 Score=71.56 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccCcCccccccCCe-----------------e-cCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPV-----------------T-VCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv-----------------~-~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
-.|+||++.|.+|- + ++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 37999999998852 2 489999999999999986 678999998754
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.09 E-value=2.1e-07 Score=75.39 Aligned_cols=121 Identities=16% Similarity=0.041 Sum_probs=91.1
Q ss_pred cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
....++.|+..|++.++.+|..|+++|..+ .. . .++.|+.+|++. ++.++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~---~~-----------~-~~~~L~~~L~d~--~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM---GD-----------E-AFEPLLESLSNE--DWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSC---SS-----------T-THHHHHHGGGCS--CHHHHHHHHHHHGGGCS-
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHh---Cc-----------h-HHHHHHHHHcCC--CHHHHHHHHHHHHhcCC-
Confidence 346788899999999999999888887766 21 1 258899999987 89999999999999863
Q ss_pred cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
..+++.|+.+|.+.+..++..++.+|..+.. ..+++.|++.+.+.+..++..|+.+|..
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999998889999999999998762 2457889998888899999999988764
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.9e-05 Score=68.63 Aligned_cols=193 Identities=10% Similarity=0.089 Sum_probs=132.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccccc-cH
Q 014817 200 LSSLLFHSSIEVRVNSAALIEI-VLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLVKQ-TR 276 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~-L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~~~-n~ 276 (418)
+...|.+.+...|..|+..|.. ++ ....+..........++..|...+ ++. +..++..|+.+|..|+..-. ..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~--~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVL--SQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTG--GGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHH--hcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhccccc
Confidence 4566788999999999999998 83 122221100112245788899999 555 89999999999999995432 11
Q ss_pred -H-HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-ccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 014817 277 -Y-KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HALTVPLLVKTILKISDRATEYAAGALAALC 353 (418)
Q Consensus 277 -~-~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~ 353 (418)
. ... .-.+|.+++.+.+....+++.+..+|..++..-+- ..... -...++.|+..|.+.++.+++.++.+|..++
T Consensus 97 f~~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 97 FSKDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp SCHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1 122 22788999999887788888888888887742110 00000 0124556777788889999999999999988
Q ss_pred cCCH---HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 354 SASE---RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 354 ~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
...+ ......+...+++.|..++... ++.+|..|..+|..+...-
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 6322 2211222256889999999666 9999999999999988653
No 140
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.04 E-value=0.002 Score=54.00 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=148.0
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~ 224 (418)
.++..++.+|.++ -..|+.+|+.++..++..-++....+ +..|..+++ +..-......+.+++.+
T Consensus 32 ~~l~~lI~~LDDD-------lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~l-- 97 (253)
T 2db0_A 32 SVLKKLIELLDDD-------LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQM-- 97 (253)
T ss_dssp HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccH-------HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHH--
Confidence 4678888999776 47899999999998876543332222 445555554 45666666778888888
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
+.. +..+. .+++|.|..=.+-+ ++..+.+...+|..++.....-. .+++.-+..++.+.+..-+-.++
T Consensus 98 -a~i---~Pe~v--~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aL 165 (253)
T 2db0_A 98 -AKE---KPELV--KSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTAL 165 (253)
T ss_dssp -HHH---CHHHH--HHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHH
T ss_pred -HHh---CHHHH--HhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHH
Confidence 322 23332 35888888888888 89999999999999986544322 33566778888876644444455
Q ss_pred HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817 305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA 384 (418)
Q Consensus 305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 384 (418)
..+..+. ++.-..+. -.+|.|..+|...+..++..|+.+|.+++.-++..|.. +...+.-+... ++-+
T Consensus 166 nFi~alG---en~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv 233 (253)
T 2db0_A 166 NFIEAMG---ENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLV 233 (253)
T ss_dssp HHHHTCC---TTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHH
T ss_pred HHHHHHh---ccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHH
Confidence 4444433 33333332 46899999998899999999999999999988887774 33333545445 7777
Q ss_pred HHHHHHHHHHHHhh
Q 014817 385 KRKAQLLLKLLRDS 398 (418)
Q Consensus 385 ~~~A~~~L~~l~~~ 398 (418)
+.+....|..+.-.
T Consensus 234 ~~~V~egL~rl~l~ 247 (253)
T 2db0_A 234 NKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.01 E-value=9.5e-05 Score=68.31 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=115.1
Q ss_pred ChhhhHHHHHHHHH-HccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHH
Q 014817 255 YPRGLKVGIKALFA-LCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKT 333 (418)
Q Consensus 255 ~~~~~~~a~~aL~~-L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~ 333 (418)
+.+.++.++.-|.. +....+....+++.||+..|+.+...++.+.+.-++.+|..|..+..|...++.+...|..++.+
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 56667777777776 44556778999999999999999999999999999999999999999999998877788899988
Q ss_pred HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc--------C--hHHHHHHHHh--hCCCHHHHHHHHHHHHHHHhh
Q 014817 334 ILKISDRATEYAAGALAALCSASERCQRDAVSA--------G--VLTQLLLLVQ--SDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 334 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--------g--~i~~L~~ll~--~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+.+....+.+.|+.+|..++..++.....+.++ | -...|+.+|+ ..++..++-+|..++..+-..
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAA 287 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence 888889999999999999998554333222221 1 2678888997 234888998888887766554
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.01 E-value=8.3e-05 Score=67.09 Aligned_cols=179 Identities=9% Similarity=0.116 Sum_probs=125.5
Q ss_pred ChhHHHHHHHHHhc-CCCChhHHHhhc---cc-CCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhh-hHhhch
Q 014817 166 SPELAHESLALLVM-FPLTETECMEIA---SD-ADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNL 238 (418)
Q Consensus 166 ~~~v~~~a~~~L~~-l~~~~~~~~~~i---~~-~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~-~~i~~~ 238 (418)
+..-+..|+..|.. +..+. .+.. .+ ...+..|.+.| +..+..++..|+.+|..|+.+...+... ...
T Consensus 29 ~w~eRk~al~~L~~~~~~~~---~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--- 102 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQT---KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--- 102 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGC---CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH---
T ss_pred CHHHHHHHHHHHHHHHHhcC---CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH---
Confidence 57778888888887 76321 2222 11 24577788888 6889999999999999994211101221 222
Q ss_pred hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-
Q 014817 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPA- 315 (418)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~- 315 (418)
.-+++.++..+.+. .+.++.++..+|.+++.+-+ +...- . ...++.|+..|.+.+..+++.++.+|..++....
T Consensus 103 ~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 103 SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 23789999999988 78999999999999886432 11000 0 1267788888888888999999999998884322
Q ss_pred ---HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 316 ---GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 316 ---~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.-...+. ...+|.|.+.|...+..+++.|..+|..++.
T Consensus 180 ~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1112221 3789999999999999999999999999887
No 143
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.01 E-value=0.00013 Score=70.68 Aligned_cols=223 Identities=12% Similarity=0.104 Sum_probs=151.0
Q ss_pred hHHHHHHHHHhcCCCChhHHHhhcccCC--chHHHHHHhcC---------------C--CHHHHHHHHHHHHHHHhcccc
Q 014817 168 ELAHESLALLVMFPLTETECMEIASDAD--KITSLSSLLFH---------------S--SIEVRVNSAALIEIVLAGMRS 228 (418)
Q Consensus 168 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~~L~~---------------~--~~~~~~~a~~~L~~L~~~s~~ 228 (418)
..+..++.+|..|...+ +.|..+.+.+ .++.++.+++. + ..+.+.+++-+++-| +.+
T Consensus 183 ~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL---SF~ 258 (480)
T 1ho8_A 183 DTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL---TFN 258 (480)
T ss_dssp HHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH---TTS
T ss_pred chHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH---HcC
Confidence 34556777777776666 7888887543 36666654431 1 256688999999999 888
Q ss_pred hhhhhHhhchhhhH--HHHHHHhhcCCCChhhhHHHHHHHHHHccccc-----cHHHHH-HcCchHHHHHHhcCC---Cc
Q 014817 229 QELRAQISNLDEIF--EGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-----TRYKAV-AAGAAETLVDRLADF---DK 297 (418)
Q Consensus 229 ~~~~~~i~~~~g~i--~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-----n~~~i~-~~G~v~~Lv~lL~~~---~~ 297 (418)
++..+.+.. .++. +.|+.+++... .+.+.+-++.+|.||..... ....++ ..++ +.+++.|... |+
T Consensus 259 ~~~~~~l~~-~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~De 335 (480)
T 1ho8_A 259 PVFANELVQ-KYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDE 335 (480)
T ss_dssp HHHHHHHHT-TSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSH
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcH
Confidence 888887754 4443 67888888765 68899999999999987641 222233 3444 5577777542 55
Q ss_pred ccHHHHHHHHHH-------HhcCHhHHHHHHh------------------------c-cCChHHHHHHHhc---------
Q 014817 298 CDAERALATVEL-------LCRIPAGCAEFAE------------------------H-ALTVPLLVKTILK--------- 336 (418)
Q Consensus 298 ~~~~~a~~~L~~-------L~~~~~~~~~i~~------------------------~-~g~i~~Lv~~l~~--------- 336 (418)
++.+..-.+... ++.-++++.++.. . -..+..|+++|.+
T Consensus 336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~ 415 (480)
T 1ho8_A 336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 415 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence 554443332222 2223333333221 1 1256788888863
Q ss_pred -CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 337 -ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 337 -~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.++.+..-|+.=|..+++..|+-+..+.+.|+=..++.++.+. ++++|..|..+++.+-.+
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 2566667777777888887788888888899999999999777 999999999999887665
No 144
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.95 E-value=0.0031 Score=64.60 Aligned_cols=258 Identities=12% Similarity=0.083 Sum_probs=162.3
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHh--hcccccccCCChhHHHHHHHHHhcCCC
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
..+.+-|++++ ...+--|++.|..+.. ++ +. ...++.+.++| .+. ++.|+..|+.++..+..
T Consensus 114 N~l~kDl~~~n--~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~-------~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 114 NAIKNDLASRN--PTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDT-------MDSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHHHHHHSCC--HHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSS-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC--HHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHH
Confidence 34555566553 3345678888887743 33 22 23567888888 444 68999999999887764
Q ss_pred ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--------
Q 014817 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS-------- 254 (418)
Q Consensus 183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-------- 254 (418)
.. ...+-..++++.|.++|.+.++.++..|+.+|..++ ..+.+.-... ....+..|-+++..+..
T Consensus 178 ~~---p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~--~~~~~~~~~~--~~~~~~~L~~ll~~~~~~~~~~~~~ 250 (621)
T 2vgl_A 178 TS---PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA--QKNPEEFKTS--VSLAVSRLSRIVTSASTDLQDYTYY 250 (621)
T ss_dssp HC---GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH--HHCHHHHTTH--HHHHHHHHHHHHHCCSSSCSTTEET
T ss_pred hC---hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH--HhChHHHHHH--HHHHHHHHHHHHhCCCCCccchhhc
Confidence 22 233333589999999999999999999999999994 2222211111 02233444444433211
Q ss_pred ---ChhhhHHHHHHHHHHcccc--ccHHHHHHcCchHHHHHHhcC---------CC--cccHHHHHHHHHHHhcCHhHHH
Q 014817 255 ---YPRGLKVGIKALFALCLVK--QTRYKAVAAGAAETLVDRLAD---------FD--KCDAERALATVELLCRIPAGCA 318 (418)
Q Consensus 255 ---~~~~~~~a~~aL~~L~~~~--~n~~~i~~~G~v~~Lv~lL~~---------~~--~~~~~~a~~~L~~L~~~~~~~~ 318 (418)
++-.+...+..|..++..+ +.+..+.+ .++.++..+.+ .+ ..+.-.++.++..+...++.+.
T Consensus 251 ~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~ 328 (621)
T 2vgl_A 251 FVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV 328 (621)
T ss_dssp TEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3567778888888887543 23333322 33344433211 11 2566677888887775554433
Q ss_pred HHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh-hCCCHHHHHHHHHHHHHHHh
Q 014817 319 EFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ-SDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 319 ~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~A~~~L~~l~~ 397 (418)
. ++..|..++.+.++.++-.|+..|..++...+. .. ++ ......++..|. ++ +..+|..|..+|..+..
T Consensus 329 ~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 329 R------ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp H------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred H------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC
Confidence 3 345677777778999999999999999985431 11 12 234566667776 55 88999999999887764
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.88 E-value=0.00029 Score=65.04 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=134.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
+..+++.|.+++.+.+..+..-|..+. +.+.+....+.. .+|+..|+.+...+ +...+..+++||.+|=.+....
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~--q~D~~Fa~EFI~-~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIF--QEDKDLVPEFVH-SEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH--HTCTTHHHHHHH-TTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHh--hcchHHHHHHHH-hccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccc
Confidence 345556777788888888888888832 667777777766 57899999999988 8999999999999999887777
Q ss_pred HHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHhc------c-C--ChHHHHHHHh---cCChHHH
Q 014817 277 YKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAEH------A-L--TVPLLVKTIL---KISDRAT 342 (418)
Q Consensus 277 ~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~------~-g--~i~~Lv~~l~---~~~~~~~ 342 (418)
..+++ ...|..+..++.+.+..+...|+.+|..++...+ +...+... + | -...|+.+|. ..+..++
T Consensus 195 ~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred cchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 66664 4678888888888778899999999999986544 33222221 0 1 3679999997 5788899
Q ss_pred HHHHHHHHHHhc--CCHHHH----HHHHhcChHHHHHHHHhhCC-CHHHHHH
Q 014817 343 EYAAGALAALCS--ASERCQ----RDAVSAGVLTQLLLLVQSDC-TDRAKRK 387 (418)
Q Consensus 343 ~~A~~~L~~l~~--~~~~~~----~~~~~~g~i~~L~~ll~~~~-~~~~~~~ 387 (418)
.+|...|-.+-. .+.+.+ ....+.|.-..+...+.+.+ ++..+++
T Consensus 275 ~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 275 VYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 998877665444 333322 33334566667777786553 4566654
No 146
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.86 E-value=3.7e-05 Score=85.35 Aligned_cols=230 Identities=11% Similarity=0.026 Sum_probs=150.6
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
++.|+.-+.++ +.+++..|..-|.+....+...-..-.....++.|++.|.+.++++|..|+.+|..++. .
T Consensus 8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~ 78 (1230)
T 1u6g_C 8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--K 78 (1230)
T ss_dssp HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHhcCCC-------CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--h
Confidence 45555555555 57888888877765332210000000112457888999998999999999999999952 2
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH------HHHHHcCchHHHHHHhc-CCCcccH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR------YKAVAAGAAETLVDRLA-DFDKCDA 300 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~------~~i~~~G~v~~Lv~lL~-~~~~~~~ 300 (418)
..+ ..+ ..+++.|+..+.+. ++.++..|+.+|..++..-... ..-.-...+|.|+..+. +.+..++
T Consensus 79 ~~~--~~~---~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 79 VKE--YQV---ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp SCH--HHH---HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred CCH--HHH---HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 211 122 34788888888877 7888999999999987543221 11123458899999998 4677888
Q ss_pred HHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817 301 ERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379 (418)
Q Consensus 301 ~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 379 (418)
..++.+|..++.. +..-.... ...++.+++.+.+.+..+++.|+.+|..++...++. + -...++.|+..|...
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccC
Confidence 9999999988731 11000001 134556666666788899999999999999743321 1 235688888888765
Q ss_pred CCHHHHHHHHHHHHHHHhhC
Q 014817 380 CTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 380 ~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+...|..+..++..+....
T Consensus 226 ~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 226 DSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp CSSCSCTTHHHHHHHHHHHS
T ss_pred CchhHHHHHHHHHHHHHHHh
Confidence 34567777888888887764
No 147
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.69 E-value=0.00052 Score=64.79 Aligned_cols=214 Identities=9% Similarity=0.016 Sum_probs=125.1
Q ss_pred HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817 148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR 227 (418)
Q Consensus 148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~ 227 (418)
+..|.+=+.++ |+-++-.|+.+|+++...+ .- ....+.+.+.|.+.++.+|..|+-+...|. ..
T Consensus 106 ~Nsl~kDl~~~-------N~~iR~lALRtL~~I~~~~--m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~ 169 (355)
T 3tjz_B 106 TSSLTKDMTGK-------EDSYRGPAVRALCQITDST--ML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLL--KC 169 (355)
T ss_dssp HHHHHHHHHSS-------CHHHHHHHHHHHHHHCCTT--TH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHhhcCCC-------cHhHHHHHHHHHhcCCCHH--HH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--cc
Confidence 55555555555 6889999999999987544 11 234567778888999999999999999883 22
Q ss_pred chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817 228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307 (418)
Q Consensus 228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 307 (418)
. .+.+ .++++.+-+++.+. ++.++.+|+.+|..+...+. . ++..|+..+..+.....-.-+.+|
T Consensus 170 ~---pe~v---~~~~~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~ll 233 (355)
T 3tjz_B 170 S---FDVV---KRWVNEAQEAASSD--NIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMI 233 (355)
T ss_dssp C---HHHH---HTTHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred C---HHHH---HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHH
Confidence 2 3333 35889999999888 89999999999999987542 1 445556666543211111222334
Q ss_pred HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHH
Q 014817 308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRK 387 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 387 (418)
..+...-..-.. ......++.+...|++.++.+.-.|++++..+...+.... ..++..|..++.+. ++.+|-.
T Consensus 234 r~l~~~~~~d~~-~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~-----~~a~~~L~~fLss~-d~niryv 306 (355)
T 3tjz_B 234 RVASRQLEDEDG-SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKEL-----APAVSVLQLFCSSP-KAALRYA 306 (355)
T ss_dssp HHHTCC------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSS-SSSSHHH
T ss_pred HHHHHhccccch-hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHH-----HHHHHHHHHHHcCC-CchHHHH
Confidence 433321110000 0112345566666778899999999999888765222211 23456676777666 8889999
Q ss_pred HHHHHHHHHhhCC
Q 014817 388 AQLLLKLLRDSWP 400 (418)
Q Consensus 388 A~~~L~~l~~~~~ 400 (418)
|...|..+...++
T Consensus 307 aLr~L~~l~~~~P 319 (355)
T 3tjz_B 307 AVRTLNKVAMKHP 319 (355)
T ss_dssp HHHCC--------
T ss_pred HHHHHHHHHHHCc
Confidence 8888888877654
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.68 E-value=0.0022 Score=68.30 Aligned_cols=251 Identities=11% Similarity=0.079 Sum_probs=159.2
Q ss_pred HHHHHHHHHhhhcChh---hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchH
Q 014817 122 LSALRRLRGLARDSDK---NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKIT 198 (418)
Q Consensus 122 ~~Al~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 198 (418)
..|+..+..++..... .-..++ +.+|.++..+.+- ...|++.|-.++..+...- +...+ ...+|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk-------~~~v~~aa~~~~~~~~~~~--~~~a~--~~~~~ 136 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK-------DKEIQSVASETLISIVNAV--NPVAI--KALLP 136 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS-------SHHHHHHHHHHHHHHHHHS--CGGGH--HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHhC--CHHHH--HHHHH
Confidence 5677777777744321 112222 4567777666544 3567766665444332110 01111 45689
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817 199 SLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276 (418)
Q Consensus 199 ~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~ 276 (418)
.|+..|.++ ....+..|+.+|..|+ ... ...++. -...||.+.+.+.+. .+++.++|..++..+|..-+|+
T Consensus 137 ~~~~~~~~~~kw~~k~~~l~~~~~~~---~~~--~~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 137 HLTNAIVETNKWQEKIAILAAFSAMV---DAA--KDQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH---HHS--HHHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCT
T ss_pred HHHHHhccccchHHHHHHHHHHHHHH---HHh--HHHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCc
Confidence 999999765 6999999999999994 222 344432 246888888888887 7999999999999999876665
Q ss_pred HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--
Q 014817 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-- 354 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-- 354 (418)
.. ...+|.|++.+.+++. +..++..|..-.--.+.-.-... -.+|.|..-|...+...++.++-++-|||+
T Consensus 210 d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 210 DI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp TT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred ch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 32 3478999999987632 45555444432211111111110 123455555555677888999999999999
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 355 ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 355 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.+|.....+ --..+|.|-.....-.+|++|+.|..++..|.+...
T Consensus 283 ~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 283 EDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp CCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 777655542 233455555555555689999999999999987643
No 149
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.65 E-value=3.4e-05 Score=57.34 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=39.3
Q ss_pred cCcCccccccCCe-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 19 ~Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.|++|.-++..=. ++||+|.||..|+..|.+++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888888777665 669999999999999998888999999987653
No 150
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.59 E-value=0.003 Score=66.62 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=131.8
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAG 225 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~ 225 (418)
+++.|..+|.++ +..+.+.|+.+|+.+-.+. . ...++..|+..+. ..+..++..++..|..+
T Consensus 473 v~e~L~~~L~dd-------~~~~~~~AalALGli~vGT-g------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll--- 535 (963)
T 4ady_A 473 VYEALKEVLYND-------SATSGEAAALGMGLCMLGT-G------KPEAIHDMFTYSQETQHGNITRGLAVGLALI--- 535 (963)
T ss_dssp HHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTC-C------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhcC-------CHHHHHHHHHHHhhhhccc-C------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhh---
Confidence 467777777655 3455666666666542222 1 1234566666553 45788888888888877
Q ss_pred ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHH
Q 014817 226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERAL 304 (418)
Q Consensus 226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~ 304 (418)
.++. ...++.+++.|.... ++-++..++.++.--.....|.. +|+.|+..+. +.+..++..|+
T Consensus 536 --------~~g~-~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAV 599 (963)
T 4ady_A 536 --------NYGR-QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAV 599 (963)
T ss_dssp --------TTTC-GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred --------hCCC-hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHH
Confidence 2333 346778888887653 67777777777765555555543 4566677665 44556778888
Q ss_pred HHHHHHhcCHhHHHHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH
Q 014817 305 ATVELLCRIPAGCAEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR 383 (418)
Q Consensus 305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 383 (418)
..|..+...+. ..++.++.++. +.++.++..|+.+|..++.+++. . .++..|..++ ++.++.
T Consensus 600 iaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~-~D~d~~ 662 (963)
T 4ady_A 600 IALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT-KDPVDF 662 (963)
T ss_dssp HHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH-TCSSHH
T ss_pred HHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc-cCCCHH
Confidence 88887664332 34666776554 48999999999999999986653 1 1445555555 444888
Q ss_pred HHHHHHHHHHHHHhh
Q 014817 384 AKRKAQLLLKLLRDS 398 (418)
Q Consensus 384 ~~~~A~~~L~~l~~~ 398 (418)
+|+.|...|..+-.-
T Consensus 663 Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 663 VRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 998888888877653
No 151
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.00017 Score=51.47 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=37.5
Q ss_pred ccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~ 63 (418)
-.|.||.+++..=..- .|||.|=..||.+|++. +..+||.|+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4799999999744433 69999999999999975 2478999998865
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.016 Score=48.52 Aligned_cols=182 Identities=14% Similarity=0.074 Sum_probs=128.8
Q ss_pred cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
+..++..++..|..+-..++.+|..+|..++ ...+ +.+ .-.+..|+-|++... .........+++..++.-
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~--~~~~---el~---epl~~kL~vm~~ksE-aIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIA--KTRE---DLY---EPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCG---GGH---HHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHH--HHhH---HHH---HHHHHHHHHHHhhcc-cCchHHHHHHHHhHHHHh
Confidence 4567899999999998999999999999994 2222 233 236778888887663 567777888888888754
Q ss_pred cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
.... + .+.||.|..-..-+++.++.+...+|..++. +++--..+++ -+..++.+.+..-+..|+..+..
T Consensus 101 ~Pe~---v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r------di~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 101 KPEL---V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR------DFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp CHHH---H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH------HHHHHTSCSSHHHHHHHHHHHHT
T ss_pred CHHH---H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH------HHHHHhcCCChHHHHHHHHHHHH
Confidence 3321 1 1366777777777899999999999998884 5655544444 35555666665556666666655
Q ss_pred HhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 352 LCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 352 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
+.....+.. .-.++.|..+|... +.-+|..|..+|-+++...
T Consensus 171 lGen~~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 171 MGENSFKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLN 212 (253)
T ss_dssp CCTTTHHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSC
T ss_pred HhccCcccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcC
Confidence 554333332 23788888888666 9999999999999998753
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.36 E-value=0.016 Score=61.17 Aligned_cols=245 Identities=11% Similarity=0.060 Sum_probs=149.5
Q ss_pred HHHHHHHhhcC-CCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccC-CChhHHHHHHHHHhcCC
Q 014817 104 VRTLLNQASSE-SNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTA-SSPELAHESLALLVMFP 181 (418)
Q Consensus 104 i~~lv~~L~~~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~-~~~~v~~~a~~~L~~l~ 181 (418)
+..|-++|... +.+...+-.|+-.|..+..+... .++..|...|.++....+. .++.++..|+-.|+...
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 34444444421 22334456677777766554321 1467777777655200000 01456777777777654
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
.+. . +..+++.|..+|...+..++..|+.+|..+ ..... . ..++..|+..+.+.. +..+++.
T Consensus 466 ~GS-~------~eev~e~L~~~L~dd~~~~~~~AalALGli---~vGTg------n-~~ai~~LL~~~~e~~-~e~vrR~ 527 (963)
T 4ady_A 466 MGS-A------NIEVYEALKEVLYNDSATSGEAAALGMGLC---MLGTG------K-PEAIHDMFTYSQETQ-HGNITRG 527 (963)
T ss_dssp TTC-C------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCC------C-HHHHHHHHHHHHHCS-CHHHHHH
T ss_pred cCC-C------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hcccC------C-HHHHHHHHHHHhccC-cHHHHHH
Confidence 433 1 124578888999888777777777787777 22111 1 346677777665543 6788889
Q ss_pred HHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817 262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD 339 (418)
Q Consensus 262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~ 339 (418)
++.+|.-+....+. .++.+++.|.. .++.++..++.++..-.....+. .+|..|++.+.+ .+.
T Consensus 528 aalgLGll~~g~~e--------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 528 LAVGLALINYGRQE--------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHHHTTTCGG--------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCH
T ss_pred HHHHHHhhhCCChH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcH
Confidence 99999888655442 56677887764 45555566665555322211111 124445555543 678
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+++.|+.+|..|..+++ ..++.++.+|...+++.+|+.|+.+|..+...
T Consensus 593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 899999999998887664 24566777665555999999999999988643
No 154
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.26 E-value=0.00036 Score=47.62 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=38.9
Q ss_pred cccCcCccccccCCeecCCCC-----cccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQ-----TYDRPSIESWVA-TGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~-~~~~~cp~~~~~l~ 63 (418)
.-.|.||.+-..+|.+.||.. .|=+.|+.+|+. .++.+||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 346999999888898888653 688999999997 45788999998775
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.18 E-value=0.019 Score=54.10 Aligned_cols=207 Identities=10% Similarity=0.013 Sum_probs=128.2
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM 226 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s 226 (418)
+...+++++.+. +.+.++-..-.+.+++...++ .+ -++..|.+=++++++-+|..|.++|.++ .
T Consensus 69 lf~~v~kl~~s~-------d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I---~ 132 (355)
T 3tjz_B 69 AFFAMTKLFQSN-------DPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQI---T 132 (355)
T ss_dssp HHHHHHGGGGCC-------CHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHhcCC-------CHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcC---C
Confidence 345566777776 466666665566666544212 11 3577788888999999999999999999 3
Q ss_pred cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817 227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT 306 (418)
Q Consensus 227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~ 306 (418)
.. + +. ....+.+.+.|.+. ++-+++.|+-+..+|...... +++ +.+..+-+++.+.++.++.+|+.+
T Consensus 133 ~~-~----m~--~~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~l 199 (355)
T 3tjz_B 133 DS-T----ML--QAIERYMKQAIVDK--VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGL 199 (355)
T ss_dssp CT-T----TH--HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CH-H----HH--HHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHH
Confidence 32 2 22 24677788888888 899999999999999765433 233 688999999998888999999999
Q ss_pred HHHHhcCHhHHHHHHhccCChHHHHHHHhcC---ChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCH
Q 014817 307 VELLCRIPAGCAEFAEHALTVPLLVKTILKI---SDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTD 382 (418)
Q Consensus 307 L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~---~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~ 382 (418)
|..+...+. ..+..++..+..+ ++-.+-.-++.+..++.++ ++. ....++.|...|++. ++
T Consensus 200 L~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~ 264 (355)
T 3tjz_B 200 LYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNK-HE 264 (355)
T ss_dssp HHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SH
T ss_pred HHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCC-Ch
Confidence 999986431 1234455555442 3333333333333333333 221 234555565556555 77
Q ss_pred HHHHHHHHHHHHHHh
Q 014817 383 RAKRKAQLLLKLLRD 397 (418)
Q Consensus 383 ~~~~~A~~~L~~l~~ 397 (418)
.+.-.|++++-.+..
T Consensus 265 aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 265 MVVYEAASAIVNLPG 279 (355)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhccC
Confidence 777777777776655
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.09 E-value=0.032 Score=59.39 Aligned_cols=261 Identities=8% Similarity=0.023 Sum_probs=168.6
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~ 183 (418)
+..+++.+..++ ...+..|...+..+...+... .....++++.|.+.+..-. +. +.|+.++..|+..
T Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~------~~---~~a~~~~~~~~~~ 82 (986)
T 2iw3_A 16 LEELFQKLSVAT--ADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK------TA---ANAMQAVAHIANQ 82 (986)
T ss_dssp HHHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH------HH---HHHHHHHHHHTCT
T ss_pred HHHHHhhccccc--hhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC------CH---HHHHHHHHHHHHh
Confidence 344556565543 223567788888876543221 1222467788888876542 12 7777777777643
Q ss_pred hh---HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817 184 ET---ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK 260 (418)
Q Consensus 184 ~~---~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 260 (418)
.. ..-..++ +.++.++....+....+|..|..++..+.. ..+.. .+ ..++|.|+..|.+.. ....+.
T Consensus 83 ~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~-~~~~~---a~---~~~~~~~~~~~~~~~-kw~~k~ 152 (986)
T 2iw3_A 83 SNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVN-AVNPV---AI---KALLPHLTNAIVETN-KWQEKI 152 (986)
T ss_dssp TTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHH-HSCGG---GH---HHHHHHHHHHHHHCC-CHHHHH
T ss_pred cCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHH-hCCHH---HH---HHHHHHHHHHhcccc-chHHHH
Confidence 31 1111221 467778888777778899988888888842 12222 22 358999999998763 589999
Q ss_pred HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817 261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
.|+.+|..|+..........=...||.+-+.+-+..+++...|..++..+|..-.|+.. ...||.|++.|.+.+.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~- 227 (986)
T 2iw3_A 153 AILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE- 227 (986)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH-
T ss_pred HHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh-
Confidence 99999999986542222222246788888888888889999999999988853333321 3678999999987643
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 341 ATEYAAGALAALCS---ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 341 ~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
...++..|..-+. -+...... .+|.|.+-|... +...+|+++-++.||++.=
T Consensus 228 -~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 228 -VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp -HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccC-cchhheeeEEEEcchhhhc
Confidence 3334444444332 12222222 456677777555 8889999999999999863
No 157
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.91 E-value=0.23 Score=48.14 Aligned_cols=238 Identities=13% Similarity=0.158 Sum_probs=147.0
Q ss_pred cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh---HHHhhcc-cCCchHHHHHHhcCCCHHHH-HHHHHHH
Q 014817 145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET---ECMEIAS-DADKITSLSSLLFHSSIEVR-VNSAALI 219 (418)
Q Consensus 145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~-~~g~i~~Lv~~L~~~~~~~~-~~a~~~L 219 (418)
..++..++.+|.... +.++....+..+.-+...+. ..-..+. .+.....+.....+.+.... ..+..++
T Consensus 76 ~~~~~~~l~lL~~~~------~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSD------NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp STTHHHHHHHHHSCC------CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcC------hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 456788999998764 67788888877776554442 2222222 23333334443333344444 4455444
Q ss_pred HHHHhcccchhhhhHhhchhhhHHH------HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC--chHHHHHH
Q 014817 220 EIVLAGMRSQELRAQISNLDEIFEG------VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG--AAETLVDR 291 (418)
Q Consensus 220 ~~L~~~s~~~~~~~~i~~~~g~i~~------Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G--~v~~Lv~l 291 (418)
..+ ..... . . ...++. +...|.... +...+..++.+|..|...++.|..+.+++ .++.++.+
T Consensus 150 ~ll---~~~~~-~----~-~~~l~~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~i 219 (480)
T 1ho8_A 150 SLL---VQNGL-H----N-VKLVEKLLKNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKI 219 (480)
T ss_dssp HHH---TSTTT-C----C-HHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHH---hccCC-c----c-HhHHHHHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHH
Confidence 555 21111 1 1 223333 444555531 34556689999999999999999998754 47777665
Q ss_pred hcC---------------CC--cccHHHHHHHHHHHhcCHhHHHHHHhccCCh--HHHHHHHhc-CChHHHHHHHHHHHH
Q 014817 292 LAD---------------FD--KCDAERALATVELLCRIPAGCAEFAEHALTV--PLLVKTILK-ISDRATEYAAGALAA 351 (418)
Q Consensus 292 L~~---------------~~--~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i--~~Lv~~l~~-~~~~~~~~A~~~L~~ 351 (418)
+.. +. ..++-.++-++..|+-+++..+.+..+ +.. +.|+.+++. ..+++.+-++.+|.|
T Consensus 220 l~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~N 298 (480)
T 1ho8_A 220 LQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQ 298 (480)
T ss_dssp HHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 541 11 234678899999999999888888764 533 566676765 668899999999999
Q ss_pred HhcCC----HHHHH-HHHhcChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817 352 LCSAS----ERCQR-DAVSAGVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 352 l~~~~----~~~~~-~~~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
+...+ ..... .+...++ .+++..|+. ..++.+.+--..+...|.+..+
T Consensus 299 ll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 299 CCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp TTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88743 23333 3444556 445677753 4578888887777777776543
No 158
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.83 E-value=0.0079 Score=55.50 Aligned_cols=192 Identities=11% Similarity=0.068 Sum_probs=112.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchh---hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817 198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLD---EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~---g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
..+.+++ +-+.+.+--+..+++-+ ..++.....+.... .++..+...+.... .+..+--+++++.|+..+..
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~---~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~-~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLS---IKHPSVNENFCNEKEGAQFSSHLINLLNPKG-KPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHH---TTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHH---HcCccHHHHhhccccchHHHHHHHHhcCCCC-ChHHHHHHHHHHHHccCCch
Confidence 3444443 33344444455555555 44444444443211 12323334443332 56678889999999999988
Q ss_pred cHHHHHHc--CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 014817 275 TRYKAVAA--GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAA 351 (418)
Q Consensus 275 n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~ 351 (418)
.+..+.+. -+++.+...+.+.+..++..+..++.|++.........-+....+..+..++.. .+.+..-.++.+|.+
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 88777652 233444444445567788888889999995321000000000122334444433 577788888888899
Q ss_pred HhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 352 LCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 352 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
+...+++..+.....|+...+-.+.+....+++.+.|..+|..
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 8887777777766777777666666554478888888887753
No 159
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.022 Score=51.81 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=116.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ- 274 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~- 274 (418)
+| |-.-|.+.+...|..|...|..+......+....... .....++.+-..+.+. +..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds--N~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS--NVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCC-
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhhh
Confidence 44 5678889999999999999988742111111111111 1112345556677666 89999999999998875321
Q ss_pred ---cHH--HHHHcCchHHHHHH-hcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817 275 ---TRY--KAVAAGAAETLVDR-LADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA 348 (418)
Q Consensus 275 ---n~~--~i~~~G~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~ 348 (418)
.+. ...-...++.|++- |.+....++..+..+|..++........ .+..++..+.+.++.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHH
Confidence 122 22234577888875 6676777888888888766532111111 12334445667899999999888
Q ss_pred HHHHhc--CCHHH-HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 349 LAALCS--ASERC-QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 349 L~~l~~--~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
|..+.. +.... ....+ ..+++.+..++.+. ++.+|..|..++-.+.++-
T Consensus 163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHh
Confidence 888654 21110 01000 12344555666556 9999999999998887754
No 160
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.41 E-value=0.041 Score=59.24 Aligned_cols=221 Identities=9% Similarity=0.069 Sum_probs=126.3
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhccc----CCchHH----HHHHhcCC---CHHHHHHHHHHHHHHHhcccchhhhhH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASD----ADKITS----LSSLLFHS---SIEVRVNSAALIEIVLAGMRSQELRAQ 234 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~----Lv~~L~~~---~~~~~~~a~~~L~~L~~~s~~~~~~~~ 234 (418)
+...++.|+.+++.++.........+.. ....+. ++..|++. ++-+|..|+++|..+ +..- ....
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~---~~~~-~~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF---RNQL-TKAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT---GGGS-CHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH---HhhC-CHHH
Confidence 4567888888888775321001101100 022232 33345555 899999999999999 4321 1222
Q ss_pred hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc---------cHHHHHH--cCchHHHHHHhcCCC-----cc
Q 014817 235 ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ---------TRYKAVA--AGAAETLVDRLADFD-----KC 298 (418)
Q Consensus 235 i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~---------n~~~i~~--~G~v~~Lv~lL~~~~-----~~ 298 (418)
+ ..+++.++..|.+. ++.++..|+.||.+++...+ .+..+.. ...++.|+.++.... ..
T Consensus 494 l---~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 494 L---IELMPILATFLQTD--EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp H---HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred H---HHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 2 45788899988876 79999999999999987422 2222321 235566666666531 11
Q ss_pred cHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhc-----CChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHH
Q 014817 299 DAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILK-----ISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQ 371 (418)
Q Consensus 299 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~ 371 (418)
..+.++.+|..++..- +.-..... ..++.|+..+.. .++........+|..++.. +++... -....+++.
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~ 645 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPT 645 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHH
Confidence 3356666666655311 11011111 123344444432 3555666677777777763 333222 234557788
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 372 LLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 372 L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
+..+|+.. .....+.+..++..+....
T Consensus 646 ~~~iL~~~-~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 646 FLTVFSED-IQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHTT-CTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhh-hHhhHHHHHHHHHHHHHhc
Confidence 88888765 4456666777777777664
No 161
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.40 E-value=0.034 Score=54.74 Aligned_cols=250 Identities=10% Similarity=0.071 Sum_probs=152.8
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh--hhhHHhhcChHHHHHHHhhcc--ccccc-CCChhHHHHHHHHHh
Q 014817 104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDK--NRSLISSHNVRAILSQVFFTN--INVKT-ASSPELAHESLALLV 178 (418)
Q Consensus 104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~~~-~~~~~v~~~a~~~L~ 178 (418)
.+.|+..|-++ ..+.|=.|+-+||++.+.... .|..-......-.|+-+|.-+ .++.+ ..-..|+|.++.+|+
T Consensus 176 cE~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 176 FEQISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp THHHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 34555555443 677777899999998765432 121001112233333333211 11111 113568999988888
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
.+ ..-++. ..++..|+..+.....+++..+.-.|+++ . +.+..-.++++.++.-|.+. +.++
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~------DLL~~Ld~Vv~aVL~GL~D~--DDDV 315 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---K------EFVEDKDGLCRKLVSLLSSP--DEDI 315 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---G------GGCCCHHHHHHHHHHHTTCS--SHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---H------HHHHHHHHHHHHHHhhcCCc--ccHH
Confidence 76 443221 35566666666778899999999999888 1 11111367899999999988 8999
Q ss_pred hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCC-c-ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817 259 LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFD-K-CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~-~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~ 336 (418)
+..|+.+|.-++ ..+... .++..+.+.|.+-| - ......+.+|+.|+..+.. .......||.|...+++
T Consensus 316 RAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 999999999999 211111 24455556665432 2 3345667788887765531 12223678888888888
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK 393 (418)
Q Consensus 337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 393 (418)
.-..++..++.+|..+. +.. ++..+.+-+--..++.+++.+..+.+
T Consensus 387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999988876 222 22222222222337888887777765
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.23 E-value=0.23 Score=43.92 Aligned_cols=238 Identities=18% Similarity=0.086 Sum_probs=147.0
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhccccc-c--cCC--ChhHHHHHHH
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINV-K--TAS--SPELAHESLA 175 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~-~--~~~--~~~v~~~a~~ 175 (418)
+.+..++..|..++ .|..|+..|.+--..-+.-...+- .-|.+..|++=+-+-... . .-. ...=..+|+.
T Consensus 3 ~~i~qli~~L~~p~----~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSPE----TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSSTT----THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch----hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 35666777776542 367777777664332233333332 257777776443222110 0 000 0111356777
Q ss_pred HHhcCCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817 176 LLVMFPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK 250 (418)
Q Consensus 176 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~ 250 (418)
.|..++.+. +.|..+.++...--|-.+|+..+ ...|-.+.++++.|+. ..+.+.-..+-. .++||..++.++
T Consensus 79 LlQcvAshp-etr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK-~dd~eVi~fLL~-tEiiplCLrime 155 (268)
T 2fv2_A 79 LLQCVASHP-ETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK-TDEQEVINFLLT-TEIIPLCLRIME 155 (268)
T ss_dssp HHHHHHHCT-TTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHH-TTHHHHHHHHHH
T ss_pred HHHHHHcCc-chhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc-cCcHHHHHHHHh-hhHHHHHHHHHh
Confidence 777777766 78999999887777777776543 6778899999999953 233333333323 569999999999
Q ss_pred cCCCChhhhHHHHHHHHHHccccccHHHHHH--------cCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817 251 NLSSYPRGLKVGIKALFALCLVKQTRYKAVA--------AGAAETLVDRL-ADFDKCDAERALATVELLCRIPAGCAEFA 321 (418)
Q Consensus 251 ~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--------~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 321 (418)
.+ ++-.+..|.-.+..+-.++....-+.. ..++..++.-+ .+++..+.+..+.+-..|+.++..|+++.
T Consensus 156 ~G--selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 156 SG--SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp HS--CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hc--cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99 788888888888888766654333321 12333444433 35677888999999999999999999887
Q ss_pred hc------cCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 014817 322 EH------ALTVPLLVKTILKISDRATEYAAGALAAL 352 (418)
Q Consensus 322 ~~------~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l 352 (418)
.. .|....+ ..+++..+++=...+.|+
T Consensus 234 ~~LP~~Lrd~tf~~~----l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 234 QCLPDQLKDTTFAQV----LKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHSCGGGTSSTTHHH----HTSCHHHHHHHHHHHHHS
T ss_pred HhCcHHhhChHHHHH----HhcCHHHHHHHHHHHHhc
Confidence 63 1221111 225666666665555554
No 163
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.19 E-value=0.0022 Score=48.81 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=28.7
Q ss_pred CcccCcCccc-cccCCee--cCCCCcccHHHHHHHH
Q 014817 16 YHFRCPISLE-LMCDPVT--VCTGQTYDRPSIESWV 48 (418)
Q Consensus 16 ~~~~Cpi~~~-~~~dPv~--~~~g~~~~r~~i~~~~ 48 (418)
+++.|+||.+ ++++||. +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4578999996 5899999 8999999999999943
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.15 E-value=0.26 Score=45.25 Aligned_cols=169 Identities=12% Similarity=0.004 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHH-HhhcccccccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQ-VFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
.++..+.+.++.+. +.++-+++.+|-++. ++.....+.+.+.-..++. ++..-.. . ..+..+-.++.++.|+
T Consensus 103 ~~l~~l~kil~WP~---~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~p~n~ml~lR~l~Nl 175 (304)
T 3ebb_A 103 QQLQILWKAINCPE---DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNP-K--GKPANQLLALRTFCNC 175 (304)
T ss_dssp HHHHHHHHHHTSCT---TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCT-T--SCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCH---HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCC-C--CChHHHHHHHHHHHHc
Confidence 45555555553332 245777888777665 4555555554333334442 2221110 0 1455678888999999
Q ss_pred CCChhHHHhhccc--CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817 181 PLTETECMEIASD--ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG 258 (418)
Q Consensus 181 ~~~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 258 (418)
..+. ..+..+.. ...++.+...+.+.+..++..++.++.|++ ...-..+ ..-....++..+..+++... +.++
T Consensus 176 F~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlA--v~~~~~~-~~~~~~~ll~~l~~il~~~~-d~Ea 250 (304)
T 3ebb_A 176 FVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYS--VCFHKDH-NIEGKAQCLSLISTILEVVQ-DLEA 250 (304)
T ss_dssp GGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH--HHHHHSC-CHHHHHHHHHHHHHHHTTCC-CHHH
T ss_pred cCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH--HHHhhcC-CchHHHHHHHHHHHHHhccC-CHHH
Confidence 8777 56776653 234555565666678999999999999995 2211111 11111225556666676554 7899
Q ss_pred hHHHHHHHHHHccccccHHHHHHc
Q 014817 259 LKVGIKALFALCLVKQTRYKAVAA 282 (418)
Q Consensus 259 ~~~a~~aL~~L~~~~~n~~~i~~~ 282 (418)
...++.||.+|...+.....+.+.
T Consensus 251 lyR~LvALGtL~~~~~~~~~lak~ 274 (304)
T 3ebb_A 251 TFRLLVALGTLISDDSNAVQLAKS 274 (304)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHHH
Confidence 999999999999776666666554
No 165
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.09 E-value=0.0016 Score=60.01 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=37.3
Q ss_pred cccCcCccccccC----Cee----cCCCCcccHHHHHHHHHcC-C---------CCCCCCCCCCC
Q 014817 17 HFRCPISLELMCD----PVT----VCTGQTYDRPSIESWVATG-N---------TTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~d----Pv~----~~~g~~~~r~~i~~~~~~~-~---------~~cp~~~~~l~ 63 (418)
..-|+||...+.+ |-. ..|||.|-..||.+|+... . +.||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3479999999987 433 3699999999999999741 1 46999998764
No 166
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0068 Score=56.64 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=52.2
Q ss_pred cccCcCccccccCCeec-CCCCc--ccHHHHHHHHH-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817 17 HFRCPISLELMCDPVTV-CTGQT--YDRPSIESWVA-TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD 79 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~~~~-~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~ 79 (418)
.+.||+++..|+.|+-- .|.|. |+...+-.... .+.-.||+|.+.+...++..+.-+.++++.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 47999999999999977 69997 98888877654 345679999999999999888877776543
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.11 Score=47.10 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=116.6
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHHhhhcChhh--hhH-Hhhc-ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 107 LLNQASSESNTYGSRLSALRRLRGLARDSDKN--RSL-ISSH-NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~--~~~-i~~~-g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
|-++|.+. +...|.+|+..|..+....+.. ... +... ...+.+-..+.+. |..++..++.+|..++.
T Consensus 14 l~e~l~sk--~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-------N~~v~~~al~~l~~~~~ 84 (278)
T 4ffb_C 14 LEERLTYK--LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-------NVVAQEQAIVALNSLID 84 (278)
T ss_dssp HHHHTTCS--SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-------SHHHHHHHHHHHHHHHT
T ss_pred HHHhcccC--cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHH
Confidence 44666654 6778899999999877543221 111 1112 2344555666544 78899998888775542
Q ss_pred Ch--hH---HHhhcccCCchHHHHHH-hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817 183 TE--TE---CMEIASDADKITSLSSL-LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP 256 (418)
Q Consensus 183 ~~--~~---~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 256 (418)
.- .. ......-...++.|+.- |.+....++..+..++..++ .... ...-+++.++..+.+. ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~---~~~~------~~~~~~e~l~~~l~~K--np 153 (278)
T 4ffb_C 85 AFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC---GLDT------SITQSVELVIPFFEKK--LP 153 (278)
T ss_dssp TCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH---HTSS------SSHHHHHHHGGGGGCS--CH
T ss_pred HhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---HhcC------cHHHHHHHHHHHHhcc--CH
Confidence 11 01 11111224567778765 78888999999988888873 2111 1123566777778888 89
Q ss_pred hhhHHHHHHHHHHcccc----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 014817 257 RGLKVGIKALFALCLVK----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR 312 (418)
Q Consensus 257 ~~~~~a~~aL~~L~~~~----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 312 (418)
.++..++..|..+...- -+....+. .+++.+..+|.+.+..++..|..++..+-.
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999998888875331 12222222 356677888899999999999998887764
No 168
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.62 E-value=0.41 Score=42.30 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=103.1
Q ss_pred ChhhhHHHHHHHHHHccccccHHHHH--HcCchHHHHHHhcCC-----Ccc-------cHHHHHHHHHHHhcCHhHHHHH
Q 014817 255 YPRGLKVGIKALFALCLVKQTRYKAV--AAGAAETLVDRLADF-----DKC-------DAERALATVELLCRIPAGCAEF 320 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~n~~~i~--~~G~v~~Lv~lL~~~-----~~~-------~~~~a~~~L~~L~~~~~~~~~i 320 (418)
+++.++.|+.-|..=-..-++-..++ .-|.+..|++=+-+- .+. -+-+|+..|..+|.+++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 45567766555554332223333333 358888877644321 111 2356888889999999999999
Q ss_pred HhccCChHHHHHHHhcC-----ChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817 321 AEHALTVPLLVKTILKI-----SDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394 (418)
Q Consensus 321 ~~~~g~i~~Lv~~l~~~-----~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 394 (418)
.. +...-.|...|... -+-.+-.+++++..+.+ .+++...-..+.++++.+++.++.+ ++-.|-.|..+++.
T Consensus 94 l~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqK 171 (268)
T 2fv2_A 94 LA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQK 171 (268)
T ss_dssp HH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence 99 57766777777653 24567889999999998 7888888888999999999999888 99999999999887
Q ss_pred HHhh
Q 014817 395 LRDS 398 (418)
Q Consensus 395 l~~~ 398 (418)
+-..
T Consensus 172 IL~d 175 (268)
T 2fv2_A 172 ILLD 175 (268)
T ss_dssp HHHS
T ss_pred Hhcc
Confidence 7553
No 169
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.28 E-value=0.28 Score=44.07 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=109.9
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh--cccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF--TNINVKTASSPELAHESLALLVMFPLTETECMEIAS-- 192 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-- 192 (418)
+...+.+|+..|......++. ..+. .++.+++.+. -.+ +|..+...++.+|..+...-.+.--.+.
T Consensus 59 d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d-----~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFE-----TNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTS-----CCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344567888888887654432 2222 2333333221 111 1678888888877655321101000111
Q ss_pred -cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 193 -DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 193 -~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
..-.+|.|+.-+.+....+|..+-.+|..+ .. +..-..+.+.++.-+++. +..++..++..|..+-.
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l---~~-------v~~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL---SD-------VVGPLKMTPMLLDALKSK--NARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH---HH-------HHCHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---HH-------HCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHH
Confidence 134689999999999999999988888877 21 222244777888888888 89999999998888854
Q ss_pred ccccHHHHHHcCch---HHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817 272 VKQTRYKAVAAGAA---ETLVDRLADFDKCDAERALATVELLC 311 (418)
Q Consensus 272 ~~~n~~~i~~~G~v---~~Lv~lL~~~~~~~~~~a~~~L~~L~ 311 (418)
..... -..++ +.+..++.+.|..++..|+.++..+-
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33221 24478 99999999999999999998887544
No 170
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.25 E-value=1.9 Score=46.19 Aligned_cols=215 Identities=10% Similarity=-0.026 Sum_probs=122.6
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh---c--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL---F--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L---~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g 240 (418)
+...++.|+.+|+.++....... ...++.++.++ . ..++.++..++++|..++ .....+...+ ..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~--~~l~~~~~~l---~~ 546 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYC--NWLMENPAYI---PP 546 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTH--HHHC----CH---HH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHH--HHHhcCHHHH---HH
Confidence 45678889999998876542211 13444444443 3 247899999999999993 2112222222 34
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCC--CcccHHHHHHHHHHHhcC--H
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADF--DKCDAERALATVELLCRI--P 314 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~--~ 314 (418)
+++.|+..|. +.++..|+.++.+++..- +..+.- .+.+..+..++..+ +...+..+..++..++.. +
T Consensus 547 vl~~l~~~l~-----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 547 AINLLVRGLN-----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHHHHHH-----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHhC-----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 7787887773 468999999999999432 333322 34556666677653 345667777777777642 2
Q ss_pred hHHHHHHhccCChHHHHHHHhc----C--ChHHHHHHHHHHHHHhc-----CCH--HH--------HHHHHhcChHHHHH
Q 014817 315 AGCAEFAEHALTVPLLVKTILK----I--SDRATEYAAGALAALCS-----ASE--RC--------QRDAVSAGVLTQLL 373 (418)
Q Consensus 315 ~~~~~i~~~~g~i~~Lv~~l~~----~--~~~~~~~A~~~L~~l~~-----~~~--~~--------~~~~~~~g~i~~L~ 373 (418)
+.+..... ..++++++.+.. . ++..+......|..|+. ++. .. .-.-....+++.+.
T Consensus 620 ~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 620 EEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp THHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 34444333 344555554432 1 33334444445444443 111 00 00111245677777
Q ss_pred HHHhhC-CCHHHHHHHHHHHHHHHhhC
Q 014817 374 LLVQSD-CTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 374 ~ll~~~-~~~~~~~~A~~~L~~l~~~~ 399 (418)
.++... .++.+.+.+.++++.+....
T Consensus 698 ~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 698 RIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 777543 36789999999999977654
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.22 E-value=0.016 Score=53.95 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=52.4
Q ss_pred cccCcCccccccCCeec-CCCCc--ccHHHHHHHHH-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817 17 HFRCPISLELMCDPVTV-CTGQT--YDRPSIESWVA-TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD 79 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~~~~-~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~ 79 (418)
.+.||++...|+.|+-- .|.|. |+...+-.+.. .+.-.||+|.+.+...++..+.-+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 46999999999999977 69998 99888887765 445679999999998999888877776543
No 172
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.01 E-value=1.1 Score=41.33 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc
Q 014817 172 ESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN 251 (418)
Q Consensus 172 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~ 251 (418)
.+...|..|- ++++.-..+++.+++..+..+++-.+.++.......|... +.....+..= . ...+|.+++.++.
T Consensus 262 R~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV---SDaksL~~t~-L-~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 262 RTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV---SDAKALAKTP-L-ENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH---TTCGGGGTSC-C-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeee---cchHHHhhcc-c-cccchHHHHHhcc
Confidence 3444455444 4547788999999999999999999999999999999999 6555433322 2 4589999999886
Q ss_pred CCCChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhc
Q 014817 252 LSSYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLA 293 (418)
Q Consensus 252 ~~~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~ 293 (418)
.. +.++.....+.|+|...+... +...+..|+++.|-..+.
T Consensus 336 h~-eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 336 HP-DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp CC-CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CC-CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 54 788999999999999988764 555578999999988875
No 173
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.69 E-value=0.059 Score=47.71 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=37.8
Q ss_pred ccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPLTD 64 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~~ 64 (418)
..|.+|.++..-=+.-+ ||+.|-+.|+.+|++. +...||.|+.+.+.
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46999999988544443 9999999999999974 45689999987653
No 174
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.66 E-value=4.2 Score=43.37 Aligned_cols=216 Identities=12% Similarity=0.045 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh---cCCCHHHHHHHHHHHHHHHhcccc-hhhhhHhhchhhh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL---FHSSIEVRVNSAALIEIVLAGMRS-QELRAQISNLDEI 241 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L---~~~~~~~~~~a~~~L~~L~~~s~~-~~~~~~i~~~~g~ 241 (418)
+...++.++.+|+.++..-.+ .....++.++..| ..+++.++..++++|..+ +.. ......+ ..+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~---~~~l~~~~~~l---~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL---SEWLADHPVMI---NSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHT---HHHHHHCHHHH---TTT
T ss_pred chHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH---HHHHHhCHHHH---HHH
Confidence 567788888888887654311 1123455565554 335788999999999998 432 2222333 347
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCC--CcccHHHHHHHHHHHhcC--Hh
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADF--DKCDAERALATVELLCRI--PA 315 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~--~~ 315 (418)
++.|+..|. ++.++..|+.+|.+++.... ..+.- ...+..|..++..+ +...+..+..++..++.. .+
T Consensus 531 l~~l~~~l~----~~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 531 LPLVLHALG----NPELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp HHHHHHHTT----CGGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhC----CchHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 888888874 46899999999999985321 11211 22344445555543 345667777888777642 34
Q ss_pred HHHHHHhccCChHHHHHHHhc-----CChHHHH---HHHHHHHHHhc--CC--H-H----------------HHHHHHhc
Q 014817 316 GCAEFAEHALTVPLLVKTILK-----ISDRATE---YAAGALAALCS--AS--E-R----------------CQRDAVSA 366 (418)
Q Consensus 316 ~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~---~A~~~L~~l~~--~~--~-~----------------~~~~~~~~ 366 (418)
.+..... ..++.+...+.. .++..+. ....+|..+.. +. + . ........
T Consensus 605 ~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (963)
T 2x19_B 605 EILKNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ 682 (963)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence 4555444 456666665542 2344443 33333434333 11 0 0 00111223
Q ss_pred ChHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhhCC
Q 014817 367 GVLTQLLLLVQSD-CTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 367 g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l~~~~~ 400 (418)
.+.+.+..++... .+..+.+.+..+++.+.....
T Consensus 683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 4566666666532 267889999999998876543
No 175
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.13 E-value=2.5 Score=38.94 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=111.5
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh--chhhhHH
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS--NLDEIFE 243 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~--~~~g~i~ 243 (418)
++++.-.+...|+.+...+ ...+.+...+.+..+.+.++.++-++...|..++..|. ..+........ ...-+..
T Consensus 136 ~~diAl~~G~mLRecir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelL--t~Hk~lvaefL~~nyd~Ff~ 212 (341)
T 1upk_A 136 SPEIALNCGIMLRECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL--TRHKLLSAEFLEQHYDRFFS 212 (341)
T ss_dssp STTTHHHHHHHHHHHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH--HSSHHHHHHHHHHTHHHHHH
T ss_pred cchhHhHHHHHHHHHHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHH--hccHHHHHHHHHHhHHHHHH
Confidence 5777788888899888777 66666777778889999999999999999999999996 55554333332 2234667
Q ss_pred HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI 313 (418)
Q Consensus 244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 313 (418)
..-.+|.++ +--++..++..|..|-....|..-|.. ..-+..++.+|++.+..++-.|-.+....+.+
T Consensus 213 ~y~~Ll~S~--NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 213 EYEKLLHSE--NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCC--cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 777888988 899999999999999988877666643 45677888888888888988888887765543
No 176
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.96 E-value=0.85 Score=48.94 Aligned_cols=192 Identities=11% Similarity=0.065 Sum_probs=108.5
Q ss_pred hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-----Hhc----------------
Q 014817 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSS-----LLF---------------- 205 (418)
Q Consensus 147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-----~L~---------------- 205 (418)
.++..++++..... ......+...++..+..++... ..+..+.....++.++. .|.
T Consensus 288 ~~~~~~~~l~~~~~--~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~ 364 (960)
T 1wa5_C 288 FIQITWNLLTSISN--QPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY 364 (960)
T ss_dssp HHHHHHHHHHHCCS--CTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred HHHHHHHHHHhcCC--CcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence 45555565542110 0014567788888777765443 33444432344555552 221
Q ss_pred -------CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh------cCCCChhhhHHHHHHHHHHccc
Q 014817 206 -------HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK------NLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 206 -------~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~------~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
+.....|..|..+|..|+ ..-. ..+. .-+++.+-.++. +. +...++.|+.++..++..
T Consensus 365 i~~d~e~~d~~s~R~aa~~~L~~l~---~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~--~w~~reaal~algaia~~ 435 (960)
T 1wa5_C 365 IRRDLEGSDTDTRRRACTDFLKELK---EKNE--VLVT--NIFLAHMKGFVDQYMSDPSK--NWKFKDLYIYLFTALAIN 435 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHH---HHCH--HHHH--HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBS
T ss_pred HHhccCcccccCcHHHHHHHHHHHH---HHcc--hhHH--HHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHH
Confidence 011245667777888883 2221 2221 224555555565 23 667899999999999754
Q ss_pred cccHHHHHHc-----CchH----HHHHHhcCC---CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817 273 KQTRYKAVAA-----GAAE----TLVDRLADF---DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340 (418)
Q Consensus 273 ~~n~~~i~~~-----G~v~----~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~ 340 (418)
...+..-.+. ...+ .++..|.+. ++.++..++++|...+..- .. .... ..++.+++.|.+.+..
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~-~~l~--~~l~~l~~~L~d~~~~ 511 (960)
T 1wa5_C 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TK-AQLI--ELMPILATFLQTDEYV 511 (960)
T ss_dssp SCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CH-HHHH--HHHHHHHHHTTCSCHH
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CH-HHHH--HHHHHHHHHhCCCChh
Confidence 2111100000 1222 233344555 6778899999999988641 11 2222 4577888888878899
Q ss_pred HHHHHHHHHHHHhc
Q 014817 341 ATEYAAGALAALCS 354 (418)
Q Consensus 341 ~~~~A~~~L~~l~~ 354 (418)
++..|+.+|.+++.
T Consensus 512 V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 512 VYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999886
No 177
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.73 E-value=3.4 Score=36.91 Aligned_cols=176 Identities=11% Similarity=0.051 Sum_probs=111.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh----cCCCChhhhHHHHHHHHHHcccc-
Q 014817 199 SLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK----NLSSYPRGLKVGIKALFALCLVK- 273 (418)
Q Consensus 199 ~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~~a~~aL~~L~~~~- 273 (418)
.+...|-+.+..-+..++..|.... ..+ ...+.. .+..+++.+. +. ++.+...++.+|..+...-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l--~~~---~~~~~~---~lDll~kw~~lr~~d~--N~~v~~~~L~~L~~l~~~l~ 119 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLA--DTS---PRSLLS---NSDLLLKWCTLRFFET--NPAALIKVLELCKVIVELIR 119 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHH--HHC---HHHHHH---THHHHHHHHHHHTTSC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHh--hhC---hHHHHH---HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667777776663 222 222211 2334444332 44 7888888888888874321
Q ss_pred --ccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817 274 --QTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA 350 (418)
Q Consensus 274 --~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~ 350 (418)
+.+..-.+ .-.+|.|++-+.+....+++.+-.+|..+..- ..-....+.+++-+.+.|.+.++.++..+.
T Consensus 120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 11111111 23689999988877777888888777766531 111123445666678889999999998888
Q ss_pred HHhc--CCHHHHHHHHhcChH---HHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 351 ALCS--ASERCQRDAVSAGVL---TQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 351 ~l~~--~~~~~~~~~~~~g~i---~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
.+-. |-. ...++ +.+..++... +..+|..|..++-.+..+-
T Consensus 193 ~li~~~G~~-------~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 193 YYITNAGIS-------PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHCSG-------GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-------ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh
Confidence 8765 333 23467 8888888666 9999999999988777654
No 178
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.45 E-value=0.85 Score=44.11 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=84.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc
Q 014817 205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA 284 (418)
Q Consensus 205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~ 284 (418)
..|+...+..|+..|.... ...++ +. ..+|.+++++.++. +..++..|.+.|..+|.. ++..++
T Consensus 38 ~kg~~k~K~LaaQ~I~kff--k~FP~----l~--~~Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck~-~~i~ki----- 101 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFF--KHFPE----LA--DSAINAQLDLCEDE--DVSIRRQAIKELPQFATG-ENLPRV----- 101 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHG--GGCGG----GH--HHHHHHHHHHHTCS--SHHHHHHHHHHGGGGCCT-TCHHHH-----
T ss_pred cCCCHHHHHHHHHHHHHHH--hhChh----hH--HHHHHHHHHHHhcc--cHHHHHHHHHhhHHHhhh-hhhhhH-----
Confidence 4678999999999999883 33333 22 35899999999998 899999999999999988 766654
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA 351 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~ 351 (418)
+..|+++|...+..-....-.+|..|.. ++. +.+..+...+.++++.+++.++.-|..
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 5678999987665433444444443332 211 333444444555677888888877755
No 179
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.12 E-value=1.2 Score=48.19 Aligned_cols=141 Identities=9% Similarity=-0.027 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCC---ChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817 207 SSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSS---YPRGLKVGIKALFALCLVKQTRYKAVAA 282 (418)
Q Consensus 207 ~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~a~~aL~~L~~~~~n~~~i~~~ 282 (418)
.+...++.++++++.++. ...++ ....+ ..+++.|+.++..... ...++..++++|...+..-........
T Consensus 465 ~~W~~~EA~~~a~gaIa~-~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISG-TMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTT-SSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHc-CCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-
Confidence 478999999999999942 22222 23333 3589999999875310 223444666777766543322222211
Q ss_pred CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-cc----CChHHH----HHHHhcCChHHHHHHHHHHHHHh
Q 014817 283 GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HA----LTVPLL----VKTILKISDRATEYAAGALAALC 353 (418)
Q Consensus 283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~L----v~~l~~~~~~~~~~A~~~L~~l~ 353 (418)
.++..|++.|...++++++.|++++.+||. +.+..+.. +. ..++.+ .+....-+......+..++..+.
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 244445555555567899999999999995 33344431 00 123333 33333346666678888888877
Q ss_pred c
Q 014817 354 S 354 (418)
Q Consensus 354 ~ 354 (418)
.
T Consensus 618 ~ 618 (1023)
T 4hat_C 618 S 618 (1023)
T ss_dssp T
T ss_pred H
Confidence 7
No 180
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.11 E-value=7.2 Score=35.91 Aligned_cols=203 Identities=14% Similarity=0.014 Sum_probs=142.2
Q ss_pred hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh----hhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817 189 EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL----RAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK 264 (418)
Q Consensus 189 ~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 264 (418)
..+...+.+..|+..|..=+-+.|..++.+..++. ...... -..+.....+ |.-++.... +++..-.+-.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~ll--r~~~~~~~p~v~Yl~~~pei---l~~L~~gYe-~~diAl~~G~ 145 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNIL--RRQIGTRTPTVEYICTQQNI---LFMLLKGYE-SPEIALNCGI 145 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHH--TCCBTTBCHHHHHHHTCTHH---HHHHHHGGG-STTTHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHH--hcccCCCCchhHHHHcCHHH---HHHHHHhhc-cchhHhHHHH
Confidence 34455688999999999999999999999999995 222111 1122222223 233333322 5677777778
Q ss_pred HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhc--cCChHHHHHHHhcCChHH
Q 014817 265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEH--ALTVPLLVKTILKISDRA 341 (418)
Q Consensus 265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~~l~~~~~~~ 341 (418)
.|+....++.....+.+.+.+-.+.+.+..++=++...|..++..|- .+......+... .......-++|.++|-..
T Consensus 146 mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 146 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 88888888888888889889999999999888888888888887555 555544444432 124556677778899999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH---H-hcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 342 TEYAAGALAALCSASERCQRDA---V-SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 342 ~~~A~~~L~~l~~~~~~~~~~~---~-~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++++++.|..|-- ++.+-..| + +..-+..++.+|.+. +..+|-.|--+.+.+..+.
T Consensus 226 kRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 226 KRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 9999999999877 33322222 2 234567777888777 9999999988888887764
No 181
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.03 E-value=3.7 Score=35.84 Aligned_cols=180 Identities=15% Similarity=0.077 Sum_probs=99.4
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhccccccc----CCChhHHHHHHHHHhcCC
Q 014817 107 LLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKT----ASSPELAHESLALLVMFP 181 (418)
Q Consensus 107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~----~~~~~v~~~a~~~L~~l~ 181 (418)
.++.|++...+ +...+-+..|+...+.++... +.| ..||+..|+.+|..-...+. ..+...+..++.+|..+.
T Consensus 5 yi~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 5 YIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccch-HHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 45666654321 111234555554444433322 234 57899999999964311000 013456777888888776
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh--h-hhHhhc---------hhhhHHHHHHHh
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE--L-RAQISN---------LDEIFEGVIDIL 249 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~--~-~~~i~~---------~~g~i~~Lv~lL 249 (418)
.........+..++.+..|+..|.+.++.++..++.+|..++ ..++ . ...+-. ...-...+++.+
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc---~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l 159 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 159 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHH---TCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHH---hCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 666333444556789999999999999999999999998884 3222 2 222210 011334566666
Q ss_pred hcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhc
Q 014817 250 KNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLA 293 (418)
Q Consensus 250 ~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~ 293 (418)
++.. +.+.+.++...+-.|..+.+ -|..+...|..+. ++-|.
T Consensus 160 ~~~~-~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i-l~~l~ 208 (233)
T 2f31_A 160 KSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR 208 (233)
T ss_dssp STTS-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH-HHHHH
T ss_pred hcCC-hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence 6442 44555555555545544432 2344445555444 44444
No 182
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.81 E-value=6.8 Score=37.02 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=108.0
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhcccccc----cCCChhHHHHHHHHHhc
Q 014817 105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVK----TASSPELAHESLALLVM 179 (418)
Q Consensus 105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~----~~~~~~v~~~a~~~L~~ 179 (418)
...++.|+++..+ .....-+..|+.....++... ..|+ .+|+..|+.+|..-.... ...+...+..++.+|..
T Consensus 69 ~~yi~~L~~~~~~-~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 69 MMYIQELRSGLRD-MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 4567777765322 112345666765555444433 3455 788999999995321000 00135677888888887
Q ss_pred CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch--hh-hhHhhc---------hhhhHHHHHH
Q 014817 180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ--EL-RAQISN---------LDEIFEGVID 247 (418)
Q Consensus 180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~--~~-~~~i~~---------~~g~i~~Lv~ 247 (418)
+..........+.....+..|+..|.+.++.++..++.+|..++ ... ++ ...+-. ...-...++.
T Consensus 147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc---~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~ 223 (383)
T 3eg5_B 147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLD 223 (383)
T ss_dssp HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHH---TCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHH---hCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 77666333445556789999999999999999999999998884 332 22 222210 0123556777
Q ss_pred HhhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcCC
Q 014817 248 ILKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLADF 295 (418)
Q Consensus 248 lL~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~~ 295 (418)
.|++.. +.+.+.++...+-.+....+ -|..+...|..+.+ .-|...
T Consensus 224 ~L~~~~-~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~lr~~ 276 (383)
T 3eg5_B 224 GLKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREI 276 (383)
T ss_dssp TTSTTS-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHTTS
T ss_pred HHHccC-cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHH-HHHhcC
Confidence 777642 55555555555555554432 23444456655554 446543
No 183
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.43 E-value=3.8 Score=43.80 Aligned_cols=218 Identities=10% Similarity=-0.007 Sum_probs=118.6
Q ss_pred chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK 196 (418)
Q Consensus 117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 196 (418)
+...+..|+..+..++..-.... ...++.++.++..-... ..++.++..++++|+.++.--....+.+ ...
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENPAYI--PPA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence 44456778888888775432211 13445555544211000 0157899999999998763211111111 234
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-- 273 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-- 273 (418)
++.|+..|. +.++..|+.+|.+++ . +.+..+.. ....+..|..++..+..+...+..+..++..++..-
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~---~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELC---R--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHH---H--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHH---H--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 666666662 678899999999994 2 22233321 135777888888875325678888899998887542
Q ss_pred ccHHHHHHcCchHHHHHHhc----CC--CcccHHHHHHHHHHHh---cCH-----h---------HHHHHHhccCChHHH
Q 014817 274 QTRYKAVAAGAAETLVDRLA----DF--DKCDAERALATVELLC---RIP-----A---------GCAEFAEHALTVPLL 330 (418)
Q Consensus 274 ~n~~~i~~~G~v~~Lv~lL~----~~--~~~~~~~a~~~L~~L~---~~~-----~---------~~~~i~~~~g~i~~L 330 (418)
+.....++ ..+++++..+. .. +..........|..|+ ..- + .-..+. ...++.+
T Consensus 620 ~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l 696 (971)
T 2x1g_F 620 EEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIF 696 (971)
T ss_dssp THHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHH
Confidence 33333332 24555555443 21 2222233333443333 110 0 011122 2466777
Q ss_pred HHHHhc--CChHHHHHHHHHHHHHhc
Q 014817 331 VKTILK--ISDRATEYAAGALAALCS 354 (418)
Q Consensus 331 v~~l~~--~~~~~~~~A~~~L~~l~~ 354 (418)
..++.. .+..+.+.+++++..++.
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 766654 366889999999888765
No 184
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.18 E-value=0.58 Score=46.24 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=109.6
Q ss_pred ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817 146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLA 224 (418)
Q Consensus 146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 224 (418)
.++..|+..+... ..+++..++-.|..+ . ..+. -.++++.++.-|++.+.+++..|+.+|.-+
T Consensus 263 ~IL~qLV~~l~~~-------~WEVRHGGLLGLKYL---~----DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI-- 326 (800)
T 3oc3_A 263 DIIEQLVGFLDSG-------DWQVQFSGLIALGYL---K----EFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHF-- 326 (800)
T ss_dssp CHHHHHTTGGGCS-------CHHHHHHHHHHHHHT---G----GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhhcCCC-------CeeehhhhHHHHHHH---H----HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhh--
Confidence 3455555444333 588999999888887 1 1221 256788888888999999999999999999
Q ss_pred cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817 225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL 304 (418)
Q Consensus 225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 304 (418)
+ . ...+ ..++..|.+.|.+-++-..........|..|+..+.+ .......||.|...+.+.-.+++..++
T Consensus 327 -A-~---p~~l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL 396 (800)
T 3oc3_A 327 -P-I---TDSL---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSIL 396 (800)
T ss_dssp -C-C---SSTH---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHH
T ss_pred -c-c---hhhH---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHH
Confidence 6 1 1122 4577777777776531223444556677777665532 111237889999999998889999999
Q ss_pred HHHHHHhcCHhHHHHHHhccCChHHHHHH-HhcCChHHHHHHHHHH
Q 014817 305 ATVELLCRIPAGCAEFAEHALTVPLLVKT-ILKISDRATEYAAGAL 349 (418)
Q Consensus 305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~-l~~~~~~~~~~A~~~L 349 (418)
.+|..+. .. .+++.+.+. |...+..+++.+..+-
T Consensus 397 ~TL~tfL-~~----------~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 397 NMVKNLS-EE----------SIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHTTTCC-CH----------HHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHH-hh----------hHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9998777 11 222333333 3447777777777763
No 185
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.88 E-value=0.84 Score=40.09 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=80.1
Q ss_pred HcCchHHHHHHhcC----C-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817 281 AAGAAETLVDRLAD----F-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349 (418)
Q Consensus 281 ~~G~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L 349 (418)
..||+..|+.+|.. + +...+..++.+|..|..+..|...+..+..++..++..|.+.+..++..|+.+|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 45777777777752 1 224456789999999999999999999988999999988889999999999999
Q ss_pred HHHhcCC---H--H-HHH------HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 350 AALCSAS---E--R-CQR------DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 350 ~~l~~~~---~--~-~~~------~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
..+|..+ . + ... ...+..-+..++..+..+.+...+-.+..++..+...
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 9999822 1 1 111 1112223445555554443555555555555555544
No 186
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.55 E-value=1.7 Score=41.21 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=84.0
Q ss_pred HHHHHcCchHHHHHHhcC-----------CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHH
Q 014817 277 YKAVAAGAAETLVDRLAD-----------FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYA 345 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A 345 (418)
..++ .+|+..|+.+|.. .+...+..++.+|..|..+..|...+..+..++..|+..|.+.++.++..|
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 5667777777641 123556778999999999999999999999999999999988999999999
Q ss_pred HHHHHHHhcCCH-H-----HHHH------HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 346 AGALAALCSASE-R-----CQRD------AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 346 ~~~L~~l~~~~~-~-----~~~~------~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
+.+|..+|..+. + .... ..+..-+..++..|....+...+-.+..++..+...
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 999999998332 1 1111 122234566666665544666666666666555543
No 187
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.55 E-value=0.39 Score=34.55 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=37.2
Q ss_pred ccCcCcccccc-----CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMC-----DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
-.|.||++-.- +|.+. .|+...||.|.+-=.++++..||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 47999998532 24444 599999999999988889999999998875
No 188
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.33 E-value=10 Score=40.60 Aligned_cols=237 Identities=10% Similarity=0.033 Sum_probs=132.0
Q ss_pred CCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH
Q 014817 98 PAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL 177 (418)
Q Consensus 98 ~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L 177 (418)
|.+..++...++...+++.+...|.+|-..|..+-+. +. +......+|..... .+.+++--|+.+|
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~----~~~~vr~fa~~~L 67 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTK----YKPSTRLICLQTL 67 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTT----SCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCC----CCHHHHHHHHHHH
Confidence 3455677777765555543444567787777776443 32 45555667755320 0467888888776
Q ss_pred hcCC--CChhH----HHhhcccCCchHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817 178 VMFP--LTETE----CMEIASDADKITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL 249 (418)
Q Consensus 178 ~~l~--~~~~~----~~~~i~~~g~i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL 249 (418)
.+.. .+. + .+..+ +...+..+.. .. .+..-++...+.+|..++ ..+ .- ....+.++-|+.++
T Consensus 68 ~~~I~~l~~-e~~~~~~~~l-r~~ll~~l~~-~~~~~~~~~IrnKL~~~la~l~---~~~-~p---~~Wp~~i~~l~~~~ 137 (980)
T 3ibv_A 68 SEKVREWNN-ESNLLELQMI-RDSVWSYIKE-LSFLDEPAYISNAVQHLLTLLF---LQL-YP---SNWNDFFASLQGVI 137 (980)
T ss_dssp HHHHHHCCT-TTSHHHHHHH-HHHHHHHHHH-CCSTTSCTHHHHHHHHHHHHHH---HHH-TT---TTCTTHHHHHHHHH
T ss_pred HHHHHhCCh-hhhHHHHHHH-HHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHH---HHh-Cc---ccCchHHHHHHHHh
Confidence 6322 122 2 22222 2222333333 11 245778888888888883 322 11 13356888899988
Q ss_pred hcCCCCh-hhhHHHHHHHHHHccc----c-----c--c-----HHHHHHcC---chHHHHHHhcC----CCcccHHHHHH
Q 014817 250 KNLSSYP-RGLKVGIKALFALCLV----K-----Q--T-----RYKAVAAG---AAETLVDRLAD----FDKCDAERALA 305 (418)
Q Consensus 250 ~~~~~~~-~~~~~a~~aL~~L~~~----~-----~--n-----~~~i~~~G---~v~~Lv~lL~~----~~~~~~~~a~~ 305 (418)
..+ +. ......+++|..|+.. . + . +..+.+.. +++....+|.. .+..+...++.
T Consensus 138 ~~~--~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 138 AAS--SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCC--ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 875 34 4455566666644321 0 0 1 22222211 14444445532 56677788888
Q ss_pred HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHH
Q 014817 306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAV 364 (418)
Q Consensus 306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~ 364 (418)
+|..-..+-.. ..++.. ..++.+.+.+. ++..++.|+.+|..|.. .+++....++
T Consensus 216 ~l~s~i~wi~~-~~i~~~-~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 216 VYAQWVSWINI-NLIVNE-PCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHHHHTTTSCH-HHHHCH-HHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhhcCH-Hhhhcc-hHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 88877764322 333442 56666666554 58899999999999887 3444443333
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.81 E-value=1.5 Score=36.10 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=62.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|.+.++.++..|+.+|-.+.. .......++.+...+..|+.++....++.+|+++..+++.-....+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45577888888999999999999888877 4577888888888999999999754578999999999988877544
No 190
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.76 E-value=6.8 Score=41.69 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=103.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHcccc-ccHHHHHHc
Q 014817 205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVK-QTRYKAVAA 282 (418)
Q Consensus 205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~ 282 (418)
.+.+...++.++.+|..++.+... +. ...++.++..+.. ...++.++..++++|...+..- .+. ... .
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~-~~-------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~ 528 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV-NY-------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-N 528 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS-SC-------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-T
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc-hh-------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-H
Confidence 445778899999999999421111 11 1244455554422 1116789999999999988642 222 233 3
Q ss_pred CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCC-HH
Q 014817 283 GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH-ALTVPLLVKTILK--ISDRATEYAAGALAALCSAS-ER 358 (418)
Q Consensus 283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~-~~ 358 (418)
.+++.|+..|.+ +.++..|+.+|..++. +.+..+... ...+..+.+++.+ -+...+..+..++..++... ++
T Consensus 529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 529 SVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp TTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 688888888854 7899999999999994 222222211 0223333444443 25678888899988887633 23
Q ss_pred HHHHHHhcChHHHHHHHHh----hCCCHHHHHHHHHHHHHHHh
Q 014817 359 CQRDAVSAGVLTQLLLLVQ----SDCTDRAKRKAQLLLKLLRD 397 (418)
Q Consensus 359 ~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~A~~~L~~l~~ 397 (418)
...... ..+++++...+. .+.++..+.....++..|+.
T Consensus 605 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 605 EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 333222 234555544443 22256666665556555543
No 191
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.52 E-value=1.3 Score=47.79 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=59.0
Q ss_pred ChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCC-----CcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817 255 YPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADF-----DKCDAERALATVELLCRIPAGCAEFAEHALTVP 328 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~ 328 (418)
+-..++++++++..++.... ....-.=..+++.|+.++.+. ...+...++++|...+..-........ ..+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHH
Confidence 67899999999999996643 222212234677888877531 112333555666655532211111221 2333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 329 LLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 329 ~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.|++.|...++.+++.|++++.+||.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 44444444678899999999999997
No 192
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.33 E-value=19 Score=34.83 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
.+...++...+++ .+.+.-|...+.+..+.-+...+ -++..++++..+. +..++..|+..|-.++
T Consensus 29 ~~y~~Il~~~kg~---~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDe-------d~~IR~qaik~Lp~~c 93 (507)
T 3u0r_A 29 DAYQVILDGVKGG---TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDE-------DVSIRRQAIKELPQFA 93 (507)
T ss_dssp HHHHHHHHGGGSC---HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCS-------SHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc-------cHHHHHHHHHhhHHHh
Confidence 3455556554443 33456788888888887776554 3678899999877 5789999999999999
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV 261 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 261 (418)
.+ ++.. .....|+++|+..++.-....-.+|..|. ..+. .|.+..|..-+.++ ++.+++.
T Consensus 94 k~--~~i~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sll---k~Dp--------k~tl~~lf~~i~~~--~e~~Rer 153 (507)
T 3u0r_A 94 TG--ENLP-----RVADILTQLLQTDDSAEFNLVNNALLSIF---KMDA--------KGTLGGLFSQILQG--EDIVRER 153 (507)
T ss_dssp CT--TCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHH---HHCH--------HHHHHHHHHHHHHS--CHHHHHH
T ss_pred hh--hhhh-----hHHHHHHHHHhccchHHHHHHHHHHHHHH---hcCh--------HHHHHHHHHHHccc--chHHHHH
Confidence 76 2222 34678899999988877777777888873 2221 34555566666666 6788888
Q ss_pred HHHHHHHH
Q 014817 262 GIKALFAL 269 (418)
Q Consensus 262 a~~aL~~L 269 (418)
++.-|..=
T Consensus 154 ~lkFi~~k 161 (507)
T 3u0r_A 154 AIKFLSTK 161 (507)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777543
No 193
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.18 E-value=1.8 Score=34.59 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=60.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..+.+.|.+.++.++..|+..|-.+.. .......++.+...+..|..++... ++.++++...++...+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC
Confidence 35567888888999999999998888776 4567777787888888898888665 89999999999988776543
No 194
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.15 E-value=15 Score=34.71 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=102.5
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhccccccc----CCChhHHHHHHHHHhcC
Q 014817 106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKT----ASSPELAHESLALLVMF 180 (418)
Q Consensus 106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~----~~~~~v~~~a~~~L~~l 180 (418)
..|+.|++.... .....-+..|+...+.++..+ ..|. .||+..|+.+|..-..... ..+...+..++.+|..+
T Consensus 8 ~yv~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 8 MYIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHTSCCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccch-HHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 456677665322 111234555555444443322 2343 7889999999854211000 01345677788888877
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh--h-hhHhh---------chhhhHHHHHHH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE--L-RAQIS---------NLDEIFEGVIDI 248 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~--~-~~~i~---------~~~g~i~~Lv~l 248 (418)
..........+...+++..|+..|.+.++.++..++.+|..++ ...+ . ...+- ....-...|++.
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc---~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~ 162 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 162 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHH---TCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHH---cCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 6666333444456789999999999999999999998888884 3222 2 22221 001234457777
Q ss_pred hhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcC
Q 014817 249 LKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLAD 294 (418)
Q Consensus 249 L~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~ 294 (418)
+.+.. +.+.+.++...+-.|..+.+ -|..+...|..+. +.-|..
T Consensus 163 l~~~~-~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr~ 213 (386)
T 2bnx_A 163 LKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELRE 213 (386)
T ss_dssp TSTTS-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTT
T ss_pred HHcCC-hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHhc
Confidence 76542 45555555555555544433 2445555665555 455553
No 195
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.63 E-value=1.6 Score=38.11 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=61.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|.+.++.++..|+.+|-.+.. .......++.+...+..|..++....+..+|+++..+++..+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 35567788888999999999999888887 4456777788888888888888776688999999999998887543
No 196
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=86.40 E-value=16 Score=33.90 Aligned_cols=128 Identities=10% Similarity=0.048 Sum_probs=94.4
Q ss_pred HHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHH
Q 014817 266 LFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATE 343 (418)
Q Consensus 266 L~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~ 343 (418)
|.||-.++. ...-++++++|..+-..+.-.+.++.....++|...+....-...-. ...+|-++..+.. +++++--
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence 445555554 56778999999999999998888888888888887775433222112 2567778887754 7888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC------CCHHHHHHHHHHHHHH
Q 014817 344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD------CTDRAKRKAQLLLKLL 395 (418)
Q Consensus 344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~A~~~L~~l 395 (418)
...+.|.|+.++.....+..+..|++..|...+..- ....-|..|+.++.|.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999998888899999999999999888532 1244455566665543
No 197
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.61 E-value=3.3 Score=39.32 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=80.6
Q ss_pred cCchHHHHHHhcC----C-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817 282 AGAAETLVDRLAD----F-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA 350 (418)
Q Consensus 282 ~G~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~ 350 (418)
.||+..|+.+|.. + +......++.+|..|..+..|...+..+..++..++..|.+.++.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5677777777741 1 2244667899999999999999999999889999999888888999999999999
Q ss_pred HHhcCCH-HH-H----------HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817 351 ALCSASE-RC-Q----------RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 351 ~l~~~~~-~~-~----------~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 398 (418)
.+|..+. +. . ....+..-+..|+..+..+.+...+-.+..++..+...
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~ 185 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 185 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC
Confidence 9998221 11 1 11112234555666665444566666666666555544
No 198
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.05 E-value=3.9 Score=32.99 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=61.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++..|.+.|.+.++.++..|+.+|-.+.. ....+..++.....+..|+.++.. ..+..+|++...+++.-+...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35678888888999999999999888877 566778888888999999999952 247899999999998887754
No 199
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=85.03 E-value=0.19 Score=29.44 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.0
Q ss_pred cccCcCccccccCCeec
Q 014817 17 HFRCPISLELMCDPVTV 33 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~ 33 (418)
-|.||+|+.-+..|-.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 38899999888776544
No 200
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.62 E-value=2.8 Score=36.33 Aligned_cols=74 Identities=8% Similarity=0.121 Sum_probs=60.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++..|.+.|.+.++.++..|+.+|-.+... ......++.+...+..|..++....+..+|+++..+++.-...-
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 345677788889999999999999998883 35577788888899999999877667899999999888887653
No 201
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.04 E-value=51 Score=35.60 Aligned_cols=134 Identities=7% Similarity=0.000 Sum_probs=78.3
Q ss_pred chHHHHHHhcC----CCHHHHHHHHHHHHHHHhcc-cchhhh-hHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817 196 KITSLSSLLFH----SSIEVRVNSAALIEIVLAGM-RSQELR-AQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 196 ~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s-~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L 269 (418)
.+..+..++.+ .++.++..+.-++..|+... .+...+ ..+. .-+...|.+.+..+ +...+..++++|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v--~~i~~~l~~~~~~~--~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL--QPLHDLLSQSSDRA--KEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT--HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH--HHHHHHHHHHHhcC--ChHHHHHHHHHhhcc
Confidence 45556666654 35677777777777774211 111111 0111 12344444555666 678888999999999
Q ss_pred ccccccHHHHHHcCchHHHHHHhcC-----C--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChH
Q 014817 270 CLVKQTRYKAVAAGAAETLVDRLAD-----F--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDR 340 (418)
Q Consensus 270 ~~~~~n~~~i~~~G~v~~Lv~lL~~-----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~ 340 (418)
-.. ..++.|..++.. . ...++..|+.+|..++... ... +-+.++++..+ .+..
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p~~------v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--PRK------VQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--HHH------HHHHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--hHH------HHHHHHHHhcCCCCChH
Confidence 763 356667777642 1 2246677899998888431 111 12346666644 6777
Q ss_pred HHHHHHHHHHH
Q 014817 341 ATEYAAGALAA 351 (418)
Q Consensus 341 ~~~~A~~~L~~ 351 (418)
++-.|+.+|..
T Consensus 530 vRiaA~~~Lm~ 540 (1056)
T 1lsh_A 530 LRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877765
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=83.71 E-value=3.4 Score=34.25 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=60.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++..|.+.|.+.++.++..|+.+|-.+... ......++.+...+..|+.++.. ..+..+|+++..+++.-....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 356788888889999999999999888873 46778888888999999999852 236899999999998887654
No 203
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=83.45 E-value=19 Score=38.75 Aligned_cols=100 Identities=8% Similarity=-0.066 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g 240 (418)
+...++.|+.+++.++..-......-.-...++.|+.+... ..+-++..+++++...+ .-.......+ ..
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~--~~~~~~~~~l---~~ 540 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP--RFLKAHWNFL---RT 540 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH--HHHHHCHHHH---HH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH--HHHHhHHHHH---HH
Confidence 56778999999998874321110000011234444443321 12333435777777662 1112222223 34
Q ss_pred hHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLV 272 (418)
Q Consensus 241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~ 272 (418)
+++.|+..+.+. ++.++..|+.++.+++..
T Consensus 541 vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 541 VILKLFEFMHET--HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHTTSS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence 788888888876 799999999999999974
No 204
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.38 E-value=3.3 Score=33.37 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=61.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW 399 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~ 399 (418)
++..|.+.|.+.++.++..|+.+|-.+.. ....+..++.+...+..|+.++.. ..+..+|++...+++.-+...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45678888889999999999999988887 457788888888999999888863 237899999999998887654
No 205
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=82.78 E-value=11 Score=32.73 Aligned_cols=144 Identities=14% Similarity=0.091 Sum_probs=91.6
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-cccc
Q 014817 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-VKQT 275 (418)
Q Consensus 197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-~~~n 275 (418)
++..-.+.++...++|..|+.+|..+ . .. ...++.+...+..+. +-.+++.++.++..++. .+..
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~---~---------~~-~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL---S---------KD-KEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT---T---------TS-HHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc---c---------Cc-HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH
Confidence 34444556777789999998866655 2 11 336666666444443 78999999999999885 3332
Q ss_pred HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-CChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-LTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
+ .++.+.....+++..++..|...+.--+..+ ...... -.++.|-.+..+.+.-+|....+.|..+++
T Consensus 139 ~-------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 K-------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp T-------THHHHHHHHHCSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2 5677788888888888777766554212111 000110 122333333334788899999999999999
Q ss_pred CCHHHHHHHHh
Q 014817 355 ASERCQRDAVS 365 (418)
Q Consensus 355 ~~~~~~~~~~~ 365 (418)
.+|+.....++
T Consensus 208 ~~Pd~V~~~~~ 218 (240)
T 3l9t_A 208 KFPDLVKIELK 218 (240)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 88887665544
No 206
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.56 E-value=8 Score=41.50 Aligned_cols=216 Identities=8% Similarity=-0.016 Sum_probs=118.8
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhc-c----cCCchHHHHHHhc-----CCCHHHHHHHHHHHHHHHhcccchhhhhHh
Q 014817 166 SPELAHESLALLVMFPLTETECMEIA-S----DADKITSLSSLLF-----HSSIEVRVNSAALIEIVLAGMRSQELRAQI 235 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i-~----~~g~i~~Lv~~L~-----~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i 235 (418)
+....|.|+.+|+.++.+-..+...+ - -+..++.|+.+++ ..++.++..+++++... +..=.
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry---s~~~~----- 527 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY---ASFFD----- 527 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT---GGGGG-----
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH---HHHHh-----
Confidence 45678888888888775432211111 1 1224455555555 46799999999999888 32211
Q ss_pred hchhhhHHHHHHHhhc--CCC--ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-------C-C-c-----
Q 014817 236 SNLDEIFEGVIDILKN--LSS--YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-------F-D-K----- 297 (418)
Q Consensus 236 ~~~~g~i~~Lv~lL~~--~~~--~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-------~-~-~----- 297 (418)
.....+++++..+-+ +.. ++.++..|+.++.+++..... .+ .+-++.++..+.. + + .
T Consensus 528 -~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~ 602 (980)
T 3ibv_A 528 -YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVP 602 (980)
T ss_dssp -TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred -cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence 123355555555444 211 578999999999999865432 12 2344555554431 0 0 0
Q ss_pred --------------ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhc-----C---ChHH-HHHHHHHHHHHh
Q 014817 298 --------------CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILK-----I---SDRA-TEYAAGALAALC 353 (418)
Q Consensus 298 --------------~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~-----~---~~~~-~~~A~~~L~~l~ 353 (418)
-..-.+++.|..... .++.+....+ ..+.++++-+.. . +... -.+.+.++.+++
T Consensus 603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~la 680 (980)
T 3ibv_A 603 TLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA 680 (980)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHH
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHh
Confidence 012345555544443 3555555554 456666665543 1 1111 125566667777
Q ss_pred cCCHH-------HHHHHHhcChHHHHHHHHhh-CCCHHHHHHHHHHHHHHHhh
Q 014817 354 SASER-------CQRDAVSAGVLTQLLLLVQS-DCTDRAKRKAQLLLKLLRDS 398 (418)
Q Consensus 354 ~~~~~-------~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~l~~~ 398 (418)
++-+. ....+ ..+.+.++..+.. +.+..++++++..++.+-..
T Consensus 681 kgf~~~~~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 681 KGFPARGSEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HTSCSCC-CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred ccCCcccCCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 63111 11111 2345555566653 34789999999999887654
No 207
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.48 E-value=19 Score=38.87 Aligned_cols=124 Identities=11% Similarity=-0.001 Sum_probs=75.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc-----CCCChhhhHHHHHHHHHHccccc
Q 014817 200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN-----LSSYPRGLKVGIKALFALCLVKQ 274 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~~a~~aL~~L~~~~~ 274 (418)
|.+.+..++.+-+..++.+|+|+ .. .+.++.|..++.. ......++.+|++||.+++....
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~---g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNA---GQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---TC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred HHHHHhcCChHHHHHHHHHhhcc---CC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch
Confidence 33444667788888899999999 22 2356677777642 11134677889999999985432
Q ss_pred cHHHHHHcCchHHHHHHhcC--CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 014817 275 TRYKAVAAGAAETLVDRLAD--FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAA 351 (418)
Q Consensus 275 n~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~ 351 (418)
.. +-+.++++..+ .+.+++..|+.+|..-.-... .+..++..+.. .+..+.......|.+
T Consensus 511 ~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~----------~l~~ia~~l~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 511 RK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVA----------LVSMVAVRLRREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHH----------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHH----------HHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 11 22346677743 355666666655543221112 23344445555 677788888888888
Q ss_pred Hhc
Q 014817 352 LCS 354 (418)
Q Consensus 352 l~~ 354 (418)
++.
T Consensus 574 la~ 576 (1056)
T 1lsh_A 574 LSR 576 (1056)
T ss_dssp HTT
T ss_pred HHh
Confidence 887
No 208
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=81.19 E-value=6 Score=34.50 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180 (418)
Q Consensus 101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l 180 (418)
.+++..+...|...+.+ +.|..|+..|..+ ... ...++.+...+..+. +-.|++.+..++..+
T Consensus 69 ~~~~~~la~~L~~~~~d-eVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~------~WrVre~lA~a~~~~ 131 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVY-QVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDN------NWRVQEVLAKAFDEF 131 (240)
T ss_dssp HHHHHHHHHHHHTCSSH-HHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcch-HHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCC------CccHHHHHHHHHHHH
Confidence 35566777788766544 3466677766655 211 124555555444443 678999988887766
Q ss_pred CC-ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817 181 PL-TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL 259 (418)
Q Consensus 181 ~~-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 259 (418)
+. ...+ ..++.+...+.+.+..+|..|+..++-- +.... ... .-.-+++.|-.+..+. +.-++
T Consensus 132 ~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW---~~~~~--~k~-dp~~ll~iL~~L~~D~--s~yVr 195 (240)
T 3l9t_A 132 CKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIW---TNRPY--FKE-NPNEAIRRIADLKEDV--SEYVR 195 (240)
T ss_dssp HHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSG---GGSTT--TTT-CHHHHHHHHHTTTTCS--CHHHH
T ss_pred HHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHH---hccch--hhc-CHHHHHHHHHHhcCCh--HHHHH
Confidence 53 1101 2578888999999999999988777654 22111 111 1122344444444444 77899
Q ss_pred HHHHHHHHHHccccc-cHHHHHH
Q 014817 260 KVGIKALFALCLVKQ-TRYKAVA 281 (418)
Q Consensus 260 ~~a~~aL~~L~~~~~-n~~~i~~ 281 (418)
++..++|..++..+. -...+++
T Consensus 196 KSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 196 KSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Confidence 999999999997764 3344443
No 209
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.90 E-value=25 Score=37.91 Aligned_cols=111 Identities=9% Similarity=0.013 Sum_probs=62.3
Q ss_pred HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-HHHHHcCchHHHHHHhcC-----CCcccHHHHHHHHHHHhcCHh
Q 014817 242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-YKAVAAGAAETLVDRLAD-----FDKCDAERALATVELLCRIPA 315 (418)
Q Consensus 242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~ 315 (418)
.+.|-..+.....+...+++++.++..++..-... ..-.-..+++.|+.+... +++.++..+++++...+..-.
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 34444445432126788999999999998542211 111111234444443321 112223346677776653211
Q ss_pred HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 316 GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 316 ~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
....... .+++.++..|.+.++.++..|+.++.++|.
T Consensus 533 ~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 533 AHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1112222 346667777766789999999999999997
No 210
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=78.11 E-value=0.59 Score=26.00 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=13.0
Q ss_pred CCcccCcCccccccCCee
Q 014817 15 PYHFRCPISLELMCDPVT 32 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~ 32 (418)
|..|.||+|+..|-|+=+
T Consensus 1 ~~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCCEECTTSSCEESSHHH
T ss_pred CCcccCccccccCcChHH
Confidence 356889999987776643
No 211
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=76.44 E-value=58 Score=35.68 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817 103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL 182 (418)
Q Consensus 103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~ 182 (418)
++..+++.+.+++.+...+..|-..|..+-... .+...+...|.+.. .+.+++-.|+..|.+...
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s-----~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKT-----QVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHH
Confidence 355566555555333334566777777764322 13334444443221 157788888887776431
Q ss_pred C-----hhHHHhhcccCCchHHHHHHhc---CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817 183 T-----ETECMEIASDADKITSLSSLLF---HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS 254 (418)
Q Consensus 183 ~-----~~~~~~~i~~~g~i~~Lv~~L~---~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 254 (418)
. +++.|..|. ...+..+...-. ..+..++...+.++..++ ..+- - ....++++.|+.++..+
T Consensus 77 ~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia---~~d~-p---~~Wp~ll~~L~~~~~~~-- 146 (1204)
T 3a6p_A 77 FRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMI---KREW-P---QHWPDMLIELDTLSKQG-- 146 (1204)
T ss_dssp HSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH---HHHS-T---TTCTTHHHHHHHHHHTC--
T ss_pred HhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHH---HHhC-c---ccchHHHHHHHHHhcCC--
Confidence 1 113344432 223333332211 145888888899999983 3321 1 12356899999998764
Q ss_pred ChhhhHHHHHHHHHHcc
Q 014817 255 YPRGLKVGIKALFALCL 271 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~ 271 (418)
+...+.++.+|..|+.
T Consensus 147 -~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 147 -ETQTELVMFILLRLAE 162 (1204)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 5667888888888863
No 212
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=75.32 E-value=1.4 Score=39.01 Aligned_cols=34 Identities=26% Similarity=0.122 Sum_probs=23.0
Q ss_pred hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHH
Q 014817 184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAA 217 (418)
Q Consensus 184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~ 217 (418)
+...|......-....|..++++.++.+|..++.
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHH
Confidence 3344555555444566777778888999888775
No 213
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=74.38 E-value=10 Score=30.84 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=58.5
Q ss_pred ChHHHHHHHh-cCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHH-HHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTIL-KISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQ-LLLLVQS--DCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~-L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|. +.++.++..|+.+|-.+.. ..+....++.+...+.. |+.++.. ..+..+|+++..+++.-+...+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3556778887 4789999999999888887 45778888888889988 7888842 2246899999999988877543
No 214
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.39 E-value=16 Score=29.74 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=55.6
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.++..|.+.|+++++.++..|+.+|-.+.. --.......|+. ..++..|+.++.... ++.++..++..|..-+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vk-NcG~~Fh~evas-~~Fl~el~~l~~~~~-~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVA-NCGKIFHLEVCS-RDFATEVRAVIKNKA-HPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HTCHHHHHHHTS-HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HhhHHHHHHHhh-HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHH
Confidence 345677788888999999999999988842 112455666765 679999999998643 78899988888876653
No 215
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.94 E-value=26 Score=31.71 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcC----CCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhcccccccCCChhHHHHHHHH
Q 014817 102 SLVRTLLNQASSE----SNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINVKTASSPELAHESLAL 176 (418)
Q Consensus 102 ~~i~~lv~~L~~~----~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~ 176 (418)
.+...+.+.++++ +++...-..|+..|..++++-...-+.+- + .+.|-.++..... .+.+++.|..+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e---f~lL~nL~~~~~~-----~~~~rE~aarI 93 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE---FALLANLSLNENL-----PLTLRELSTRV 93 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH---HHHHHHHHHCTTS-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc---HHHHHHHHhhccC-----ChhHHHHHHHH
Confidence 4566677777775 22333456799999999987655555443 3 2334444422111 46789999999
Q ss_pred HhcCCCChhHHHhhcc--cCCchHHHHHHhcC-------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH
Q 014817 177 LVMFPLTETECMEIAS--DADKITSLSSLLFH-------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID 247 (418)
Q Consensus 177 L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~-------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~ 247 (418)
|.....+++.....|. .+..+..+..-|.. ...-.+..-+.+|..| ..+. ..+. ..++..|.+
T Consensus 94 I~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L---~~~~---~~F~--~~~m~~L~~ 165 (315)
T 3qml_C 94 ITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNEL---PVTS---EDLP--IYSTVVLQN 165 (315)
T ss_dssp HHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHS---CCCS---TTC----CCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH---hcCh---Hhhh--hccHHHHHH
Confidence 9876666656555554 35666666554433 2345555667788888 4443 1222 234566666
Q ss_pred HhhcCCCChhhhHHHHHHHHHHcc
Q 014817 248 ILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 248 lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
++.....++.++..++..+..+-.
T Consensus 166 ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 166 VYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHcc
Confidence 665432267888888888877753
No 216
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=72.62 E-value=2.5 Score=30.75 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=35.1
Q ss_pred cccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
-+-|-.|=...+ -++. +.|-+|+.|+...+.. +..||+|+.++...
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 467888865444 5554 5799999999998875 78899999988643
No 217
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.07 E-value=57 Score=29.50 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhcCCCChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHH
Q 014817 167 PELAHESLALLVMFPLTETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFE 243 (418)
Q Consensus 167 ~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~ 243 (418)
.+..+.|+.-|-.++.+- ...-.|. +...+..|+ ......+.+++.++++|..-. -.++.....|.. ....+.
T Consensus 42 ~~~le~aLD~L~ElSHDi-~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL--RNNP~Al~~V~~~~p~fv~ 117 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDY-KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCL--RNNPPVVEFINESFPNFKS 117 (315)
T ss_dssp HHHHHHHHHHHGGGTTSH-HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHhhhhH-HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH--ccCHHHHHHHHHhChhHHH
Confidence 445788888889998776 4444444 334444444 334456789999999998885 566666555532 234555
Q ss_pred HHHHHhhc----CC-CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHh
Q 014817 244 GVIDILKN----LS-SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLC 311 (418)
Q Consensus 244 ~Lv~lL~~----~~-~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~ 311 (418)
.+..-|.. .. .....++.-+++|-.|..+... + ...++..|++++... +..++..++.++..+-
T Consensus 118 ~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 118 KIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 55544433 10 0346677888888888877521 1 144778888888765 6777888877776554
No 218
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=71.89 E-value=1.2 Score=28.07 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=12.2
Q ss_pred CCCCcccCcCcccc
Q 014817 13 QIPYHFRCPISLEL 26 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~ 26 (418)
++|+++.||+|+.-
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 78999999999863
No 219
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=70.08 E-value=60 Score=35.07 Aligned_cols=223 Identities=9% Similarity=-0.018 Sum_probs=131.3
Q ss_pred CCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHH
Q 014817 97 QPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLAL 176 (418)
Q Consensus 97 ~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~ 176 (418)
.+.+...+..++..+.++++ ..+.+|-..|..+-+ ++ ++...+..+|..+. +++++-.|+..
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~--~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~------~~~vR~fAa~~ 84 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEG--AQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQ------NMNTKYYGLQI 84 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSH--HHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CC------SHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCC------CHHHHHHHHHH
Confidence 34566778888888877643 346677777766643 33 33444455665443 57888888888
Q ss_pred HhcCCCC-----hhHHHhhcccCCchHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHH
Q 014817 177 LVMFPLT-----ETECMEIASDADKITSLSSLLFH-----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI 246 (418)
Q Consensus 177 L~~l~~~-----~~~~~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv 246 (418)
|.+.... +.+.+..+ +...+..+...-.. .++.++...+.++..++ ..+- -. .....++-|+
T Consensus 85 L~~~I~~~W~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~---k~~~-P~---~Wp~fi~dLv 156 (1073)
T 3gjx_A 85 LENVIKTRWKILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQIL---KQEW-PK---HWPTFISDIV 156 (1073)
T ss_dssp HHHHHHHTGGGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHH---HHHT-TT---TCTTHHHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHH---HHhC-hh---hccHHHHHHH
Confidence 7754321 11233333 22334444443222 24666777788888883 3221 11 2356788888
Q ss_pred HHhhcCCCChhhhHHHHHHHHHHccc--c-------cc-----HHHHHHcCchHHHHHHhc-----CCCcccHHHHHHHH
Q 014817 247 DILKNLSSYPRGLKVGIKALFALCLV--K-------QT-----RYKAVAAGAAETLVDRLA-----DFDKCDAERALATV 307 (418)
Q Consensus 247 ~lL~~~~~~~~~~~~a~~aL~~L~~~--~-------~n-----~~~i~~~G~v~~Lv~lL~-----~~~~~~~~~a~~~L 307 (418)
.++..+ +......+..|..|+.. + .. +..+.+ -++.++.++. ..+..+...++.+|
T Consensus 157 ~~~~~~---~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L 231 (1073)
T 3gjx_A 157 GASRTS---ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETL 231 (1073)
T ss_dssp HHHHHC---HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHhCCC---HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 888754 56677788888888643 1 01 122222 2555555542 34566777888899
Q ss_pred HHHhcCHhHHHHHHhccCChHHHH-HHHhcCChHHHHHHHHHHHHHhc
Q 014817 308 ELLCRIPAGCAEFAEHALTVPLLV-KTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 308 ~~L~~~~~~~~~i~~~~g~i~~Lv-~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
.....+-.. ..+++. +.+..++ ..+ .++..+..|+.+|..|..
T Consensus 232 ~~~~sWI~i-~~i~~~-~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 232 LRFLNWIPL-GYIFET-KLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHTTTSCT-HHHHSS-SHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH-HHhccc-hHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 888876432 345553 6566553 333 577899999999999886
No 220
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=69.32 E-value=1.3 Score=39.10 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=11.8
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 014817 200 LSSLLFHSSIEVRVNSAA 217 (418)
Q Consensus 200 Lv~~L~~~~~~~~~~a~~ 217 (418)
|..++++.+..+|..++.
T Consensus 127 L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 445566777777776665
No 221
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=69.04 E-value=1.8 Score=28.06 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=12.7
Q ss_pred CCCCCcccCcCcccc
Q 014817 12 VQIPYHFRCPISLEL 26 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~ 26 (418)
.++|+++.||+|+.-
T Consensus 31 ~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLPDDWACPVCGAS 45 (52)
T ss_dssp TSSCTTCCCSSSCCC
T ss_pred HHCCCCCcCCCCCCc
Confidence 478999999999864
No 222
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=67.70 E-value=1.6 Score=28.48 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.9
Q ss_pred CCCCCcccCcCcccc
Q 014817 12 VQIPYHFRCPISLEL 26 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~ 26 (418)
.++|+++.||+|+.-
T Consensus 31 e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 31 KDIPDDWVCPLCGVG 45 (54)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCcCCCCc
Confidence 379999999999864
No 223
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.61 E-value=27 Score=27.56 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=55.1
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.++..|.+.|.++++.++..|+.+|-.++. --.......|+. ..++..|+.++... ++.++...+..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vk-NcG~~f~~evas-~~Fl~el~~l~~~~--~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVS-NCGKIFHLEVCS-RDFASEVSNVLNKG--HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHSS-HHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hcCHHHHHHHhh-HHHHHHHHHHhccC--CHHHHHHHHHHHHHHHH
Confidence 346777888888999999999988888842 112344556655 56999999999766 88999999988887753
No 224
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.28 E-value=11 Score=29.98 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=55.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcC-hHHHHHHHHhhC----C---CHHHHHHHHHHHHHHH
Q 014817 326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAG-VLTQLLLLVQSD----C---TDRAKRKAQLLLKLLR 396 (418)
Q Consensus 326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g-~i~~L~~ll~~~----~---~~~~~~~A~~~L~~l~ 396 (418)
++..|.+.|...++.+.-.|+.+|..||. +++.++..+.+.- .|..|..+=-.+ | ...+|.+|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 35578888888899999999999999997 8888888877753 333332221111 1 1679999999999998
Q ss_pred hhCC
Q 014817 397 DSWP 400 (418)
Q Consensus 397 ~~~~ 400 (418)
...+
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 7644
No 225
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=66.16 E-value=0.21 Score=36.60 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=26.8
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
+..||.|+..|.- ..|+.+|..|=..+.. ...||.|++++.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 3679999988752 2344457777333222 356999998874
No 226
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.21 E-value=25 Score=30.30 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=56.4
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~ 271 (418)
.++..|.+-|++.++.++..|+.+|-.++. --.......|+. ..++..|+.++.... ++.+++.++..|...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vk-NcG~~f~~eias-~~fl~~l~~l~~~~~-~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVK-NCGQTVHDEVAN-KQTMEELKDLLKRQV-EVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCHHHHHHHSS-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hcchHHHHhhcc-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999998842 112334556655 578999999998754 78899999998887763
No 227
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.75 E-value=30 Score=28.43 Aligned_cols=72 Identities=7% Similarity=0.156 Sum_probs=56.1
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc--hhhhhHhhchhhhHHHHHHHhhcC----CCChhhhHHHHHHHHHH
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS--QELRAQISNLDEIFEGVIDILKNL----SSYPRGLKVGIKALFAL 269 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~--~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~a~~aL~~L 269 (418)
++..|.+.|+++++.++..|+.+|-.+. .+ ......|+. ..++..|+.++... ..+..++..++..|..-
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~v---kNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACM---KNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4577888889999999999999999994 43 456667765 67999999999631 12578899999888877
Q ss_pred cc
Q 014817 270 CL 271 (418)
Q Consensus 270 ~~ 271 (418)
+.
T Consensus 127 ~~ 128 (171)
T 1juq_A 127 TM 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 228
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.29 E-value=3.7 Score=31.76 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=37.9
Q ss_pred ccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67 (418)
Q Consensus 18 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 67 (418)
|.|..|...+.| .....-|..||+.+..+-+.. ...|..|++++....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 899999999974 456677999999998886642 3379999988875443
No 229
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=63.14 E-value=2.2 Score=27.58 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=12.4
Q ss_pred CCCCcccCcCcccc
Q 014817 13 QIPYHFRCPISLEL 26 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~ 26 (418)
++|+++.||+|+.-
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 78999999999864
No 230
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=62.75 E-value=2.7 Score=29.97 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.1
Q ss_pred CCCCCcccCcCccccccC
Q 014817 12 VQIPYHFRCPISLELMCD 29 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~d 29 (418)
.++|+++.||+|+.-=.+
T Consensus 55 edlPddW~CPvCga~K~~ 72 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp TTSCTTCCCTTTCCCGGG
T ss_pred hHCCCCCcCCCCCCCHHH
Confidence 379999999999874433
No 231
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=62.34 E-value=2.3 Score=27.88 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.4
Q ss_pred CCCCcccCcCcccc
Q 014817 13 QIPYHFRCPISLEL 26 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~ 26 (418)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999864
No 232
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=62.34 E-value=29 Score=27.75 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=57.0
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----CCChhhhHHHHHHHHHHc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----SSYPRGLKVGIKALFALC 270 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~a~~aL~~L~ 270 (418)
.++..|.+-|+++++.++..|+.+|-.++. --.......|+. ..++..|++++... ..++.++..++..|..-+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vk-NCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMN-HCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999942 113456667765 67999999998741 126789999988888776
Q ss_pred c
Q 014817 271 L 271 (418)
Q Consensus 271 ~ 271 (418)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 233
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=61.48 E-value=55 Score=31.13 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcccchhhhhHhhc
Q 014817 166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH--------SSIEVRVNSAALIEIVLAGMRSQELRAQISN 237 (418)
Q Consensus 166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~ 237 (418)
++..+-.++++|.|+..+..-.+..+........+++.+.. .+..++..++.++.|++ ...-..+..
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlA--v~~~~~~~~--- 349 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYS--ALVTKGNSD--- 349 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHH--HHHHHSCSC---
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHH--HHHhcccch---
Confidence 46677888999999987772245555443345566665531 24678899999999995 222111111
Q ss_pred hhhhHHHHHHHhh---------cCCCChhhhHHHHHHHHHHcccccc
Q 014817 238 LDEIFEGVIDILK---------NLSSYPRGLKVGIKALFALCLVKQT 275 (418)
Q Consensus 238 ~~g~i~~Lv~lL~---------~~~~~~~~~~~a~~aL~~L~~~~~n 275 (418)
...+..+++++. .. ++++...++.||.+|...+..
T Consensus 350 -~el~~~l~e~l~~~~g~~E~~~~--d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 350 -LELLPIVADAINTKYGPLEEYQE--CEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp -TTHHHHHHHHHHHTTTTSHHHHT--SHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHhhccccccccC--CHHHHHHHHHHHHHHHhcCHH
Confidence 124556666665 23 688999999999999864433
No 234
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=60.09 E-value=17 Score=32.09 Aligned_cols=135 Identities=13% Similarity=0.006 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL 200 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 200 (418)
+..+++-+|-+....+.+ +.+..++....+.. ++..+--+++++.|+..+..-.+..+.+......+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~------~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i 137 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK------NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSI 137 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTH
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC------chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHH
Confidence 467777777766554322 23333333332221 46678889999999988773256666654445555
Q ss_pred HHHhcC--------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc----C---CCChhhhHHHHHH
Q 014817 201 SSLLFH--------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN----L---SSYPRGLKVGIKA 265 (418)
Q Consensus 201 v~~L~~--------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~----~---~~~~~~~~~a~~a 265 (418)
++.+.. .+..++..++.++.|++ ...-..+.. ......++.++.. . ..++++...++.|
T Consensus 138 ~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~a--v~~~~~~~~----~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvA 211 (253)
T 3gae_A 138 FETIDTEFSQASAKQSQNLAIAVSTLIFNYS--ALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVA 211 (253)
T ss_dssp HHHSCSCCTTCCHHHHHHHHHHHHHHHHHHH--HHHHTSCSC----TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCchhHHHHHHHHHHHHH--HHHhhccch----HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 555422 25678889999999995 222111111 1244556665552 1 0167888888888
Q ss_pred HHHHccccc
Q 014817 266 LFALCLVKQ 274 (418)
Q Consensus 266 L~~L~~~~~ 274 (418)
|.+|...+.
T Consensus 212 lGtL~~~~~ 220 (253)
T 3gae_A 212 YGNLATVEP 220 (253)
T ss_dssp HHHHHHHSG
T ss_pred HHHHHhCcH
Confidence 888875443
No 235
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.05 E-value=16 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCcccCcCccccccCCeecC----CCCcccHHHHHHHHH
Q 014817 15 PYHFRCPISLELMCDPVTVC----TGQTYDRPSIESWVA 49 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~----~g~~~~r~~i~~~~~ 49 (418)
-..++|.+|.+-+.|.--+. .+|.||-.|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 44689999999999986553 379999888877765
No 236
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=59.93 E-value=5.3 Score=29.73 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=26.3
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG 51 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~ 51 (418)
.+.||+|++.+...-+.+. ..-|..|+.|..++
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMREK 95 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHh
Confidence 4689999999988766663 45689999998753
No 237
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.57 E-value=38 Score=28.99 Aligned_cols=73 Identities=7% Similarity=0.042 Sum_probs=55.5
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHc
Q 014817 195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALC 270 (418)
Q Consensus 195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~ 270 (418)
.++..|.+-|.++++.++..|+.+|-.++. --.......|+. ..++..|+.++.+.. +..+++.++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vk-NcG~~f~~eva~-~~fl~~l~~l~~~~~-~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVK-NCGAPVHEEVFT-KENCEMFSSFLESTP-HENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HSHHHHHHHHSS-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCHHHHHHHHh-HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999942 112445566765 569999999998754 6788888888777665
No 238
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.75 E-value=55 Score=26.11 Aligned_cols=74 Identities=5% Similarity=0.109 Sum_probs=55.3
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----CCChhhhHHHHHHHHHHcc
Q 014817 196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----SSYPRGLKVGIKALFALCL 271 (418)
Q Consensus 196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~a~~aL~~L~~ 271 (418)
++..|.+-|.+.++.++..|+.+|-.+.. --.......|+. ..++..|++++... ..++.++...+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvk-NCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMK-SCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999988852 123344566655 57999999999642 1167899999988887764
No 239
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=58.48 E-value=3 Score=28.88 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.0
Q ss_pred CCCCCcccCcCccccccCCe
Q 014817 12 VQIPYHFRCPISLELMCDPV 31 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv 31 (418)
.++|+++.||+|+.-=.+-.
T Consensus 35 ~~lPddw~CP~Cga~K~~F~ 54 (70)
T 1dx8_A 35 VDLSDSFMCPACRSPKNQFK 54 (70)
T ss_dssp GGSCTTCBCTTTCCBGGGEE
T ss_pred hhCCCCCcCCCCCCCHHHce
Confidence 36899999999987544433
No 240
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=58.11 E-value=1.2e+02 Score=28.35 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817 100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178 (418)
Q Consensus 100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~ 178 (418)
..+.+-.|++..+....+ .+...++.++++.-. ++. +. ..+++.++.+-.+. +.+++...+..|.
T Consensus 23 ~~~~v~~lln~A~~~~~~--~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~-------~~~vRk~~a~Fie 88 (386)
T 3o2t_A 23 TSERVVDLLNQAALITND--SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADK-------SIEVRKFVIGFIE 88 (386)
T ss_dssp HHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCS-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccChH--HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCC-------cHHHHHHHHHHHH
Confidence 345666777777653333 478999999997653 332 22 56788888877665 5789998888877
Q ss_pred cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----ccch-------hhhhHhhchhhhHHHHH
Q 014817 179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG-----MRSQ-------ELRAQISNLDEIFEGVI 246 (418)
Q Consensus 179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~-----s~~~-------~~~~~i~~~~g~i~~Lv 246 (418)
..+..+ ..+ -...++.|..+|++.++.+...++.+..++-.. ..++ +....+ ..+-..++
T Consensus 89 Ea~~~~----~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m---~~lK~~Il 160 (386)
T 3o2t_A 89 EACKRD----IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV---SAMAGDII 160 (386)
T ss_dssp HHHHHC----GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHH----HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH---HHHHHHHH
Confidence 544211 111 144577778888888888887777655555000 0111 111112 12344556
Q ss_pred HHhhcCCCChhhhHHHHHHHHHH
Q 014817 247 DILKNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 247 ~lL~~~~~~~~~~~~a~~aL~~L 269 (418)
.+++++ +..++-.++..+-.+
T Consensus 161 ~~~ds~--n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 161 LLLDSD--NDGIRTHAIKFVEGL 181 (386)
T ss_dssp HGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHhccC--CcchHHHHHHHHHHH
Confidence 666666 788888888777665
No 241
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=56.54 E-value=2.9 Score=22.22 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.5
Q ss_pred ccCcCccccccC
Q 014817 18 FRCPISLELMCD 29 (418)
Q Consensus 18 ~~Cpi~~~~~~d 29 (418)
..||+|++.|-.
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 479999998854
No 242
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=54.74 E-value=3.8 Score=29.61 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.9
Q ss_pred CCCCCcccCcCcccc
Q 014817 12 VQIPYHFRCPISLEL 26 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~ 26 (418)
.++|+++.||+|+.-
T Consensus 63 edlPddW~CPvCga~ 77 (87)
T 1s24_A 63 EDIPDDWCCPDCGAT 77 (87)
T ss_dssp GGCCTTCCCSSSCCC
T ss_pred hHCCCCCCCCCCCCC
Confidence 389999999999864
No 243
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.60 E-value=48 Score=30.82 Aligned_cols=132 Identities=13% Similarity=-0.012 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL 200 (418)
Q Consensus 121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 200 (418)
+..+++-||-+....+. .+.+..++....... .+..+-.+++++.|+..+..-.+..+........+
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~------~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i 246 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNK------NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSI 246 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCS------SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTH
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHH
Confidence 45666666666554332 223333332222211 46677888999999987772245555432233444
Q ss_pred HHHhc--------CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh---------cCCCChhhhHHHH
Q 014817 201 SSLLF--------HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK---------NLSSYPRGLKVGI 263 (418)
Q Consensus 201 v~~L~--------~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~~~a~ 263 (418)
++.+. ..+..++..++.++.|++ ...-..+.. ...+..+++++. .. ++++...++
T Consensus 247 ~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlA--v~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~--d~EA~yRlL 318 (362)
T 3l3f_X 247 FETIDTEFSQASAKQSQNLAIAVSTLIFNYS--ALVTKGNSD----LELLPIVADAINTKYGPLEEYQE--CEEAAYRLT 318 (362)
T ss_dssp HHHSCSCCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHT--SHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCchHHHHHHHHHHHHH--HHHhcccch----HHHHHHHHHHHHhhccccccccC--CHHHHHHHH
Confidence 55442 124678899999999995 222111111 124556666666 23 788999999
Q ss_pred HHHHHHcccc
Q 014817 264 KALFALCLVK 273 (418)
Q Consensus 264 ~aL~~L~~~~ 273 (418)
.||.+|...+
T Consensus 319 VALGtL~~~~ 328 (362)
T 3l3f_X 319 VAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998543
No 244
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.53 E-value=6.7 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHc
Q 014817 39 YDRPSIESWVAT 50 (418)
Q Consensus 39 ~~r~~i~~~~~~ 50 (418)
|||.|+.+|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 245
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.11 E-value=6.9 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHc
Q 014817 39 YDRPSIESWVAT 50 (418)
Q Consensus 39 ~~r~~i~~~~~~ 50 (418)
|||.|+.+|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 246
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=48.95 E-value=32 Score=37.21 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=54.2
Q ss_pred ChhhhHHHHHHHHHHccccc-c-HHHHHHcCchHHHHHHhcCCCc---c--cHHHHHHHHHHHhcCHhHHHHHHhccCCh
Q 014817 255 YPRGLKVGIKALFALCLVKQ-T-RYKAVAAGAAETLVDRLADFDK---C--DAERALATVELLCRIPAGCAEFAEHALTV 327 (418)
Q Consensus 255 ~~~~~~~a~~aL~~L~~~~~-n-~~~i~~~G~v~~Lv~lL~~~~~---~--~~~~a~~~L~~L~~~~~~~~~i~~~~g~i 327 (418)
+....+++++++..++..-. . -..++ -.+++.|+.+...... . +....+.++...+..-.....+.+ -.+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~--~vl 568 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK--TVV 568 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH--HHH
Confidence 46789999999999985422 1 11111 1345555555543311 1 222233444443322221122222 234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817 328 PLLVKTILKISDRATEYAAGALAALCS 354 (418)
Q Consensus 328 ~~Lv~~l~~~~~~~~~~A~~~L~~l~~ 354 (418)
..|++.+...++.+++.|+.++..||.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 455555555789999999999999987
No 247
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.09 E-value=0.88 Score=32.41 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=22.3
Q ss_pred ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
..||.|...|.- .-++.+|..|=..+.. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSL--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEE--EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCC--cccCcchhhHHH
Confidence 568888876642 2233445555222211 236888887764
No 248
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=47.26 E-value=8.9 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.0
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHc
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT 50 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~ 50 (418)
...||+|++.+...-+.+- ..-|..|++|..+
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAE 88 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHH
Confidence 4589999999987655553 4568999999875
No 249
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.12 E-value=18 Score=27.74 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=36.5
Q ss_pred CcccCcCccccccC-CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCD-PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
+-|.|..|+..+.+ +....-|..||+.+..+- -...|+.|++++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCcC
Confidence 44899999999987 555677999999887653 346799999988753
No 250
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.98 E-value=1.6e+02 Score=27.54 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=71.1
Q ss_pred cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-------
Q 014817 282 AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS------- 354 (418)
Q Consensus 282 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~------- 354 (418)
...++.++.+-...+.+++...+.+|...+.. ...+. .-+++.|..++...++.+.+.++.+..++-.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~el~--~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIELL--LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666667777777777655521 01111 1235556666665677777776666555432
Q ss_pred ---CCHHHHHHHHh--cChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCCCCC------CCCCCCcccccc
Q 014817 355 ---ASERCQRDAVS--AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIG------NSDDFACSEVVP 417 (418)
Q Consensus 355 ---~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~------~~~~~~~~~~~~ 417 (418)
+.....+..++ ...-..++.+++++ +..+|-.|.+.++.+--..-...+- ...||+.+.|+|
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~ 209 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPR 209 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCT
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCC
Confidence 11112223332 12334445555555 8999999999999877643222111 134777666654
No 251
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.96 E-value=14 Score=28.51 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=37.7
Q ss_pred CCcccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
++-|.|..|...|.+ +....-|..||+.+..+-+.. ...|..|++++...
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRAY 79 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECTT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCcc
Confidence 345899999999963 667778999999998775532 23799999887643
No 252
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.81 E-value=19 Score=26.12 Aligned_cols=27 Identities=7% Similarity=-0.007 Sum_probs=19.3
Q ss_pred cCcCccccccC----CeecCCCCcccHHHHH
Q 014817 19 RCPISLELMCD----PVTVCTGQTYDRPSIE 45 (418)
Q Consensus 19 ~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~ 45 (418)
.|.+|...|.- ..--.||+.||..|-.
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 69999987752 2234689999988843
No 253
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=38.76 E-value=2e+02 Score=25.15 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=61.1
Q ss_pred hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--------C-
Q 014817 285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--------A- 355 (418)
Q Consensus 285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--------~- 355 (418)
++.++.+..+.+.+++...+..|...+.. +..+. ...++.|..++...++.+.+.++.+..++-. .
T Consensus 55 l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k~~l~--~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 55 LESVLSLAHDSNMEVRKQVVAFVEQVCKV---KVELL--PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGGH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33344433333445555555555544411 01111 1234445555555566666666555444322 1
Q ss_pred -CHHHHHHHHh--cChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC---CCCCCCCCCCcccccc
Q 014817 356 -SERCQRDAVS--AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ---DSIGNSDDFACSEVVP 417 (418)
Q Consensus 356 -~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~~~~~~~ 417 (418)
.....+..++ ...=..++.+++++ +..+|-.|.+.++.+--.+-. +++-.+.||+.+.|+|
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~ 196 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPD 196 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCS
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCC
Confidence 1111222332 12333445555555 899999999999987753211 1122333777776654
No 254
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=38.35 E-value=20 Score=23.42 Aligned_cols=16 Identities=13% Similarity=0.274 Sum_probs=12.1
Q ss_pred CCCCCcccCcCccccc
Q 014817 12 VQIPYHFRCPISLELM 27 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~ 27 (418)
..+-+-+.||.|+..+
T Consensus 5 ~~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 5 AGLLEILACPACHAPL 20 (56)
T ss_dssp CSCTTSCCCSSSCSCE
T ss_pred HHHHhheeCCCCCCcc
Confidence 4566678999999854
No 255
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=37.96 E-value=39 Score=27.12 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHH-HHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817 326 TVPLLVKTILK-ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQ-LLLLVQS--DCTDRAKRKAQLLLKLLRDSWP 400 (418)
Q Consensus 326 ~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~-L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~ 400 (418)
++..|.+.|.. .++.++..|+.+|-.+.. ....+..++.+...+.- |+.++.. ..+..+|++...+++..+...+
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45667777764 577888889988888776 45667777776667764 6666643 2245799999888888876543
No 256
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.01 E-value=1.5e+02 Score=23.71 Aligned_cols=74 Identities=3% Similarity=0.064 Sum_probs=51.7
Q ss_pred chHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH-HHHHhhcCC-CChhhhHHHHHHHHHHcc
Q 014817 196 KITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG-VIDILKNLS-SYPRGLKVGIKALFALCL 271 (418)
Q Consensus 196 ~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~-Lv~lL~~~~-~~~~~~~~a~~aL~~L~~ 271 (418)
++..|.+.|+ ++++.++..|+.+|-.+.. --.+.....|+. ..++.. |++++.... .+..+++.++..|..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vk-NcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVK-NCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4567777886 4788999999999998842 112556666765 679998 899885321 135788888888776653
No 257
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=36.35 E-value=35 Score=25.11 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=35.7
Q ss_pred CCcccCcCccccccCCeecCC--C----CcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCT--G----QTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~--g----~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
++.+.|||+++.-..=|-+.. | --|+..++.+....| ..=|.+|+++...
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~s 80 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITAS 80 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHh
Confidence 345799999998887775531 1 258899999988763 4457788877643
No 258
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.96 E-value=9.8 Score=31.80 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=37.3
Q ss_pred CcccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
+-|.|..|...|.+ +....-|..||+.|..+-+.. ...|+.|++++...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccC
Confidence 44899999999985 777778999999997775432 12699998887643
No 259
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.76 E-value=39 Score=23.33 Aligned_cols=42 Identities=7% Similarity=-0.028 Sum_probs=30.0
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
..+..-.|+-|.+...+.++..-|+.|-..| ..|-.|+.+|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 3455568999999888877767776665433 67888887764
No 260
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.60 E-value=42 Score=27.63 Aligned_cols=46 Identities=9% Similarity=0.108 Sum_probs=29.2
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
-|.|..|...|.+---..-|..||+.|..+ .-...|..|++++...
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~---~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFK---RFGTKCAACQLGIPPT 132 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHH---TTSCCCTTTCCCCCSS
T ss_pred cCccCCCCCccCCCceeECCEeeecCcccc---ccccccccCCCccCCC
Confidence 367777777776543334577788776544 2245688888777543
No 261
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=33.56 E-value=73 Score=22.33 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=28.3
Q ss_pred CCCCcccCcC--ccccccC---------------Ceec---CCCCcccH-HHHHHHHH----cCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPI--SLELMCD---------------PVTV---CTGQTYDR-PSIESWVA----TGNTTCPVTRSPLT 63 (418)
Q Consensus 13 ~~~~~~~Cpi--~~~~~~d---------------Pv~~---~~g~~~~r-~~i~~~~~----~~~~~cp~~~~~l~ 63 (418)
+-...|.|++ |...|.. |..- .||..|.. ..+..... .....|+.|+..+.
T Consensus 11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 86 (100)
T 2ebt_A 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86 (100)
T ss_dssp CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence 3445688997 8887753 3333 27777753 33333332 12345777766553
No 262
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.87 E-value=2.5e+02 Score=24.52 Aligned_cols=145 Identities=13% Similarity=0.068 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~ 181 (418)
+.+-.|++..+... + ..+...++.+++++..++. . +. ..+++.++.+-.+. +.++++..+..|...+
T Consensus 15 ~~v~~lln~A~~~~-~-~~kl~~L~qa~el~~~~dp--~-ll-~~~l~~il~~~~~~-------~~~vrk~~~~Fi~e~~ 81 (257)
T 3gs3_A 15 AKVVDWCNELVIAS-P-STKCELLAKVQETVLGSCA--E-LA-EEFLESVLSLAHDS-------NMEVRKQVVAFVEQVC 81 (257)
T ss_dssp HHHHHHHHHHTTCC-H-HHHHHHHHHHHHHHTTTTG--G-GH-HHHHHHHHGGGGCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcC-c-HHHHHHHHHHHHHHHccCH--h-HH-HHHHHHHHHhccCC-------hHHHHHHHHHHHHHHH
Confidence 44555666665533 2 3578999999997765321 1 22 34667777764443 6889998888877655
Q ss_pred CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----ccch-------hhhhHhhchhhhHHHHHHHh
Q 014817 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG-----MRSQ-------ELRAQISNLDEIFEGVIDIL 249 (418)
Q Consensus 182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~-----s~~~-------~~~~~i~~~~g~i~~Lv~lL 249 (418)
..+ .-.....++.|..+|+..++.+...+..+..++-.. ..+. +.-..+ ...=..++.++
T Consensus 82 ~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m---~~lK~~Il~~~ 153 (257)
T 3gs3_A 82 KVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL---SLIKAQILDMI 153 (257)
T ss_dssp HHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH---HHHHHHHHHGG
T ss_pred HHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HHHHHHHHHHH
Confidence 221 112345677888888888888888777755554100 1111 111111 12233455556
Q ss_pred hcCCCChhhhHHHHHHHHHH
Q 014817 250 KNLSSYPRGLKVGIKALFAL 269 (418)
Q Consensus 250 ~~~~~~~~~~~~a~~aL~~L 269 (418)
+++ +..++-.+...+-.+
T Consensus 154 ~s~--n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 154 DNE--NDGIRTNAIKFLEGV 171 (257)
T ss_dssp GSS--CHHHHHHHHHHHHHH
T ss_pred ccC--CcchHHHHHHHHHHH
Confidence 665 677777777766655
No 263
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.07 E-value=46 Score=26.95 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
++-|.|..|...|.+--...-|..||+.+..+-+ ...|..|++++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH---SCBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc---cccccccccccCCC
Confidence 3458999999998876545679999998876644 35688888777544
No 264
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.02 E-value=49 Score=22.14 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=21.2
Q ss_pred ccCcCccccccCC-eecCCCCcccHHHHHHHHHc
Q 014817 18 FRCPISLELMCDP-VTVCTGQTYDRPSIESWVAT 50 (418)
Q Consensus 18 ~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~ 50 (418)
|.|..|...|.+- ....-|..||+.+..+.+..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 6777777776543 44455777777777666553
No 265
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.92 E-value=37 Score=24.65 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=33.4
Q ss_pred cccCcCccccccCC-eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDP-VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 17 ~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
=|.|..|...|.+. ....-|..||+.+..+ .-.+.|..|++++.+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 48999999998764 4456789999888533 335679999888864
No 266
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=29.71 E-value=16 Score=22.83 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=20.9
Q ss_pred cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|.|++|+..|.....+. .-+..........|+.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~-------~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-------IHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-------HHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHH-------HHHHHcCCCCCcCCCCCcchhC
Confidence 467888777665543221 1122222223456999987654
No 267
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.64 E-value=18 Score=29.76 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.1
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 34 CTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 34 ~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
.|||+|.. .....||+|+.+-
T Consensus 143 ~CG~i~~~--------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 143 ICGYTAVD--------EAPEYCPVCGAPK 163 (170)
T ss_dssp TTCCEEES--------CCCSBCTTTCCBG
T ss_pred CCCCeeCC--------CCCCCCCCCCCCH
Confidence 59999972 2245799998763
No 268
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=29.61 E-value=45 Score=34.49 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=42.9
Q ss_pred CCCCc-ccCcCccccccCCe--------ec--CCCC--------------------cccHHHHHHHHHcC-------CCC
Q 014817 13 QIPYH-FRCPISLELMCDPV--------TV--CTGQ--------------------TYDRPSIESWVATG-------NTT 54 (418)
Q Consensus 13 ~~~~~-~~Cpi~~~~~~dPv--------~~--~~g~--------------------~~~r~~i~~~~~~~-------~~~ 54 (418)
.||.| -+||-|+..|.||- +. .||= ..|..|-.+|-+-. ...
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 45444 59999999999986 33 4663 34788999986521 234
Q ss_pred CCCCCCCCCCCCCc-ccHHHHHHHHHHHH
Q 014817 55 CPVTRSPLTDFTLI-PNHTLRRLIQDWCV 82 (418)
Q Consensus 55 cp~~~~~l~~~~l~-~n~~L~~~i~~~~~ 82 (418)
||.|+-.+.-.+-. ....+++.++...+
T Consensus 186 C~~CGP~l~l~~~~~~~~~i~~aa~~L~~ 214 (761)
T 3vth_A 186 CFDCGPSLSFVGEGCFDDEIKCVAKALKE 214 (761)
T ss_dssp CTTTSCCEEEESSCCCSCHHHHHHHHHHT
T ss_pred CCccCCeeEEeCCCCchHHHHHHHHHHHc
Confidence 99998665311100 23356666555443
No 269
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.12 E-value=1e+02 Score=29.26 Aligned_cols=104 Identities=8% Similarity=0.058 Sum_probs=63.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----C--CChhhhHHHHHHHHHHccccc-c
Q 014817 203 LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----S--SYPRGLKVGIKALFALCLVKQ-T 275 (418)
Q Consensus 203 ~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~--~~~~~~~~a~~aL~~L~~~~~-n 275 (418)
.+.+.++..+..++++|.|+ ..++.....+.......+.++..+... . .+..++.+++..++|++.... .
T Consensus 270 ~l~~~~~an~MltlR~laNl---F~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~ 346 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNC---FNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG 346 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHH---TTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCChhHHHHHHHHHHHh---cCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc
Confidence 33455788899999999999 777774444433334566677665321 0 034577788889999986421 1
Q ss_pred HHHHHHcCchHHHHHHhc---------CCCcccHHHHHHHHHHHhc
Q 014817 276 RYKAVAAGAAETLVDRLA---------DFDKCDAERALATVELLCR 312 (418)
Q Consensus 276 ~~~i~~~G~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~ 312 (418)
+. +...+..+++.+. ..+.+..-.++-+|.+|..
T Consensus 347 ~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 347 NS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 1223345555554 1355666677777777773
No 270
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.79 E-value=11 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=18.7
Q ss_pred cccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817 26 LMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 26 ~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
++..|.-..||++|+. - -.....||.|+..
T Consensus 64 ~v~p~~C~~CG~~F~~-~-----~~kPsrCP~CkSe 93 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKA-E-----INIPSRCPKCKSE 93 (105)
T ss_dssp EECCCBBTTTCCBCCC-C-----SSCCSSCSSSCCC
T ss_pred EEECcChhhCcCeecc-c-----CCCCCCCcCCCCC
Confidence 3556666789999921 0 0124569999854
No 271
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.56 E-value=6.6 Score=27.84 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=21.9
Q ss_pred cccCcC--cccccc-----CCeec------CCCCcccHHHHHHH
Q 014817 17 HFRCPI--SLELMC-----DPVTV------CTGQTYDRPSIESW 47 (418)
Q Consensus 17 ~~~Cpi--~~~~~~-----dPv~~------~~g~~~~r~~i~~~ 47 (418)
-..||- |+..+. .+|+- .||+.||..|-+.|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 457888 877663 23444 48999999997776
No 272
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.30 E-value=11 Score=30.68 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=16.3
Q ss_pred cCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817 33 VCTGQTYDRPSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 33 ~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l 62 (418)
..|||.|+.. ....+||.|+.++
T Consensus 136 ~~Cg~~~~~~-------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 136 IGCGRKFSTL-------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSSCCEESSC-------CGGGBCTTTCCBE
T ss_pred CCCCCcccCC-------CCCCcCCCCCCcc
Confidence 4699999753 1235799999775
No 273
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.29 E-value=74 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=20.2
Q ss_pred CcccCcCcccccc-CCeecCCCCcccHHH
Q 014817 16 YHFRCPISLELMC-DPVTVCTGQTYDRPS 43 (418)
Q Consensus 16 ~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~ 43 (418)
..-+|..|++-.. -++.-.||.+||-..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cCCcChhhCCccCccCEEeecCCEecccc
Confidence 3468999998433 356668999999643
No 274
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.71 E-value=38 Score=22.60 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=12.1
Q ss_pred ccCcCccccccCC-eecCCCCcccHHHHHH
Q 014817 18 FRCPISLELMCDP-VTVCTGQTYDRPSIES 46 (418)
Q Consensus 18 ~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~ 46 (418)
|.|..|...|.+- ....-|..||+.|..+
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 4444444444432 1222344444444443
No 275
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.30 E-value=22 Score=27.16 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=8.0
Q ss_pred CC-CCCCCCCC
Q 014817 52 NT-TCPVTRSP 61 (418)
Q Consensus 52 ~~-~cp~~~~~ 61 (418)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 56 79999876
No 276
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.22 E-value=25 Score=24.01 Aligned_cols=30 Identities=3% Similarity=0.070 Sum_probs=16.2
Q ss_pred ccCcCcccccc--CCeecCCCCcccHHHHHHH
Q 014817 18 FRCPISLELMC--DPVTVCTGQTYDRPSIESW 47 (418)
Q Consensus 18 ~~Cpi~~~~~~--dPv~~~~g~~~~r~~i~~~ 47 (418)
|.|..|...|. +.....-|..||+.|..+.
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 56666666654 3334444556666655443
No 277
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.64 E-value=45 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=28.3
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
.|+-|.+...+.++..-|+.|-+.| ..|..|+.+|....
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAYIG 65 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSSSC
T ss_pred CCccCCCEecceEEEECCccccccC---------CccCCCCCCCCCCE
Confidence 6888888887777777777776654 66777877776443
No 278
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.48 E-value=47 Score=22.09 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=15.6
Q ss_pred ccCcCccccccC-CeecCCCCcccHHHHHH
Q 014817 18 FRCPISLELMCD-PVTVCTGQTYDRPSIES 46 (418)
Q Consensus 18 ~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~ 46 (418)
|.|..|...+.+ +....-|..||+.+..+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 566666665543 23334456666655544
No 279
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.23 E-value=42 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.3
Q ss_pred cccCcCccccccCCe-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 17 HFRCPISLELMCDPV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 17 ~~~Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.-.|+-|++...+.. +..-|..|-+.| ..|..|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 358999999888874 555677776655 67888888774
No 280
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.87 E-value=61 Score=21.42 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=19.3
Q ss_pred ccCcCccccccC-CeecCCCCcccHHHHHHHH
Q 014817 18 FRCPISLELMCD-PVTVCTGQTYDRPSIESWV 48 (418)
Q Consensus 18 ~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~ 48 (418)
|.|..|...+.+ .....-|..||+.|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 677777776654 3344556777777765544
No 281
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.79 E-value=92 Score=28.90 Aligned_cols=103 Identities=8% Similarity=0.073 Sum_probs=62.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----C--CChhhhHHHHHHHHHHccccc-cH
Q 014817 204 LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----S--SYPRGLKVGIKALFALCLVKQ-TR 276 (418)
Q Consensus 204 L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~--~~~~~~~~a~~aL~~L~~~~~-n~ 276 (418)
+.+.++..+..+++++.|+ ..++.....+.......+.++..+... . .+..++.+++..++|++.... .+
T Consensus 208 ~~~~~~~n~MltlR~laNl---F~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~ 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNC---FNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHH---TTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCChhHHHHHHHHHHHh---ccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 3455788899999999999 777774444433233445556555221 0 034577788889999986421 11
Q ss_pred HHHHHcCchHHHHHHhc---------CCCcccHHHHHHHHHHHhc
Q 014817 277 YKAVAAGAAETLVDRLA---------DFDKCDAERALATVELLCR 312 (418)
Q Consensus 277 ~~i~~~G~v~~Lv~lL~---------~~~~~~~~~a~~~L~~L~~ 312 (418)
. +...+..+++.+. ..+.+..-.++-+|.+|..
T Consensus 285 ~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 285 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 1223345555554 2355666777777777773
No 282
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.57 E-value=22 Score=23.81 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=22.5
Q ss_pred CCcccCcCccccccCCeecCCCCcccHHHHHHHHH----cCCCCCCCCCCCCC
Q 014817 15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA----TGNTTCPVTRSPLT 63 (418)
Q Consensus 15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~----~~~~~cp~~~~~l~ 63 (418)
...|.|++|...|...- .+..... .....|+.|+..+.
T Consensus 15 ~~~~~C~~C~k~f~~~~-----------~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKG-----------NLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHH-----------HHHHHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHH-----------HHHHHHHHcCCCCCEECCCCCchhC
Confidence 34689998877665432 3333322 22346999987664
No 283
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.24 E-value=91 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.8
Q ss_pred CcccCcCccccccC-CeecCCCCcccHH
Q 014817 16 YHFRCPISLELMCD-PVTVCTGQTYDRP 42 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~ 42 (418)
..-+|..|++-+.- ++.-.||.+||-.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 34689999985433 5666899999963
No 284
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.29 E-value=65 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=13.0
Q ss_pred ccCcCcccccc--CCeec-CCCCcccHHHHHHH
Q 014817 18 FRCPISLELMC--DPVTV-CTGQTYDRPSIESW 47 (418)
Q Consensus 18 ~~Cpi~~~~~~--dPv~~-~~g~~~~r~~i~~~ 47 (418)
|.|..|...+. +...+ .-|+.||+.|..+.
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 44555544443 23332 33444554444443
No 285
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=23.46 E-value=1.3e+02 Score=31.22 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=65.2
Q ss_pred CC-CCcccCcCccccccCCe--------ec--CCCC--------------------cccHHHHHHHHHcC-------CCC
Q 014817 13 QI-PYHFRCPISLELMCDPV--------TV--CTGQ--------------------TYDRPSIESWVATG-------NTT 54 (418)
Q Consensus 13 ~~-~~~~~Cpi~~~~~~dPv--------~~--~~g~--------------------~~~r~~i~~~~~~~-------~~~ 54 (418)
-| |+--+||-|+..|.||- +. .||= ..|..|-.+|-+-. ...
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 35 44569999999999987 33 3664 34888999986521 224
Q ss_pred CCCCCCCCC----CCCCcccHHHHHHHHHHHHhccCCCcccCCCCCC------CCChHHHHHHHHHhhcCCCchhhhHHH
Q 014817 55 CPVTRSPLT----DFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQ------PAEPSLVRTLLNQASSESNTYGSRLSA 124 (418)
Q Consensus 55 cp~~~~~l~----~~~l~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~------~~~~~~i~~lv~~L~~~~~~~~~~~~A 124 (418)
||.|+-.+. .........++...+...+.. +-.+|+--. ..++..|.+|-+.=..++.+-.-...-
T Consensus 181 C~~CGP~l~l~~~~~~~~~~~~i~~a~~~l~~G~----iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp~kP~avm~~d 256 (772)
T 4g9i_A 181 CPVCGPSYRLYTSDGQEIYGDPLRKAAELIDKGY----IVAIKGIGGIHLACDAANEEVVAELRRRTFRPQKPFAIMAKD 256 (772)
T ss_dssp CTTTSCCEEEESSSCBCCTTHHHHHHHHHHTTSC----CEEECCSSSBEEECCTTCHHHHHHHHHHTTCSSSCCEEECSS
T ss_pred CccCCceEEEEcCCCCeechHHHHHHHHHHHcCC----EEEEecCCeeEEEEecCCHHHHHHHHHhhCCCCCCcEEEeCC
Confidence 999986642 122233455666554443321 112222111 123455666555554444332222333
Q ss_pred HHHHHHhhhcChhhhh
Q 014817 125 LRRLRGLARDSDKNRS 140 (418)
Q Consensus 125 l~~L~~l~~~~~~~~~ 140 (418)
+..++.++.-++.-++
T Consensus 257 ~~~~~~~~~~~~~e~~ 272 (772)
T 4g9i_A 257 IETVKSFAYVSPEEEE 272 (772)
T ss_dssp HHHHHHHSCCCHHHHH
T ss_pred HHHHHHHhccCchhhh
Confidence 4555555544444333
No 286
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.45 E-value=28 Score=17.54 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=6.0
Q ss_pred ccCcCcccccc
Q 014817 18 FRCPISLELMC 28 (418)
Q Consensus 18 ~~Cpi~~~~~~ 28 (418)
|.|++|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 55666555443
No 287
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.98 E-value=1e+02 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=19.2
Q ss_pred cccCcCccccccC-CeecCCCCcccHHH
Q 014817 17 HFRCPISLELMCD-PVTVCTGQTYDRPS 43 (418)
Q Consensus 17 ~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~ 43 (418)
.-+|..|+.-..- ++.-.||.+||-..
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred CccchhhcCcccccceEeccCCEecccc
Confidence 4589999854332 67778999999643
No 288
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=56 Score=22.17 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=31.3
Q ss_pred CcccCcCccccccC-CeecCCCCcccH-HHHHHHHHcCCCCCCCCCCCC
Q 014817 16 YHFRCPISLELMCD-PVTVCTGQTYDR-PSIESWVATGNTTCPVTRSPL 62 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d-Pv~~~~g~~~~r-~~i~~~~~~~~~~cp~~~~~l 62 (418)
+-|.|..|...+.+ +....-|..||+ .+..+-+ ...|..|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 34899999999887 566667899998 5865532 35577776543
No 289
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.55 E-value=21 Score=25.05 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=7.5
Q ss_pred ccCcCcccccc
Q 014817 18 FRCPISLELMC 28 (418)
Q Consensus 18 ~~Cpi~~~~~~ 28 (418)
|.||.|++.|.
T Consensus 52 FkCP~CgEEFy 62 (95)
T 2k5c_A 52 FKCPVCGEEFY 62 (95)
T ss_dssp EECTTTCCEEE
T ss_pred hcCCCccHHHh
Confidence 56777777665
No 290
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.44 E-value=47 Score=21.81 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=19.5
Q ss_pred cCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
.|+-|.+...+.++..-|..|-..| ..|..|+.+|.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH---------FVCAKCEKPFL 42 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT---------CBCTTTCCBCS
T ss_pred CCcccCCEecceEEEECccccccCc---------CEECCCCCCCC
Confidence 4566666555555555555555543 44555555554
No 291
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.27 E-value=41 Score=24.20 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=16.1
Q ss_pred CCCcc--cHHHHHHHH---HcCCCCCCCCCCCCC
Q 014817 35 TGQTY--DRPSIESWV---ATGNTTCPVTRSPLT 63 (418)
Q Consensus 35 ~g~~~--~r~~i~~~~---~~~~~~cp~~~~~l~ 63 (418)
||.+| .+..+.... .+....|+.|++.|.
T Consensus 40 C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 40 CQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp TCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred CCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 44455 244444432 233567999987764
No 292
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.13 E-value=32 Score=17.22 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=4.6
Q ss_pred ccCcCccccc
Q 014817 18 FRCPISLELM 27 (418)
Q Consensus 18 ~~Cpi~~~~~ 27 (418)
|.|+.|+..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3455544433
No 293
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.05 E-value=51 Score=25.07 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=27.9
Q ss_pred CcccCcCcccccc--CCeecCCCCcccHHHHHHHHH
Q 014817 16 YHFRCPISLELMC--DPVTVCTGQTYDRPSIESWVA 49 (418)
Q Consensus 16 ~~~~Cpi~~~~~~--dPv~~~~g~~~~r~~i~~~~~ 49 (418)
.=|.|-.|...|. +.....-|..||+.|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 4489999999994 456677799999999988875
No 294
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.96 E-value=33 Score=17.34 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.8
Q ss_pred ccCcCccccccC
Q 014817 18 FRCPISLELMCD 29 (418)
Q Consensus 18 ~~Cpi~~~~~~d 29 (418)
|.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 445555554433
No 295
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.89 E-value=28 Score=17.61 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.9
Q ss_pred ccCcCccccccC
Q 014817 18 FRCPISLELMCD 29 (418)
Q Consensus 18 ~~Cpi~~~~~~d 29 (418)
|.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 567666655543
No 296
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.64 E-value=1.4e+02 Score=20.79 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=31.8
Q ss_pred CCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817 14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66 (418)
Q Consensus 14 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 66 (418)
.+..-.|.-|.+...+.++..-|..|-.. ...|-.|+..|....
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~---------CF~C~~C~~~L~~~~ 65 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKARDKYRHPE---------CFVCADCNLNLKQKG 65 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESSSCEECTT---------TCCCSSSCCCTTTSC
T ss_pred CCcCCCcccCCCEecccEEEECCceECcc---------CCEecCCCCCCCCCC
Confidence 34446899999998887766667666543 377889998886543
No 297
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.53 E-value=28 Score=17.25 Aligned_cols=11 Identities=9% Similarity=0.537 Sum_probs=5.2
Q ss_pred ccCcCcccccc
Q 014817 18 FRCPISLELMC 28 (418)
Q Consensus 18 ~~Cpi~~~~~~ 28 (418)
|.|++|+..|.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 44555544433
No 298
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.33 E-value=29 Score=23.77 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=20.8
Q ss_pred CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~ 64 (418)
.+-+-+.||+|+..+. . .+ .++.-.||.|+..++-
T Consensus 4 ~LLeiL~CP~ck~~L~----~------~~-------~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 4 KLLDILACPICKGPLK----L------SA-------DKTELISKGAGLAYPI 38 (69)
T ss_dssp CGGGTCCCTTTCCCCE----E------CT-------TSSEEEETTTTEEEEE
T ss_pred HHHhheeCCCCCCcCe----E------eC-------CCCEEEcCCCCcEecC
Confidence 3445678999997543 2 11 1234568878766653
No 299
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.95 E-value=37 Score=17.30 Aligned_cols=11 Identities=9% Similarity=0.443 Sum_probs=6.0
Q ss_pred ccCcCcccccc
Q 014817 18 FRCPISLELMC 28 (418)
Q Consensus 18 ~~Cpi~~~~~~ 28 (418)
|.|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 55666555443
No 300
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.89 E-value=77 Score=27.57 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=29.5
Q ss_pred cCCCCcccHHHHHHHHHc-CCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHh
Q 014817 33 VCTGQTYDRPSIESWVAT-GNTTCPVTRSPLTDF-----TLIPNHTLRRLIQDWCVA 83 (418)
Q Consensus 33 ~~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~~~-----~l~~n~~L~~~i~~~~~~ 83 (418)
+.||+.|.+..+.+.+.. ..+.||.|+..+.+. +..|...+.+.. +|.++
T Consensus 125 ~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~-~~~~~ 180 (246)
T 1yc5_A 125 VRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAI-GLSSR 180 (246)
T ss_dssp TTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHH-HHHHH
T ss_pred CCCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHH-HHHhc
Confidence 368888887766654443 246799999876542 334544454443 34443
No 301
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.89 E-value=3e+02 Score=21.49 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=31.1
Q ss_pred chHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHHHHHhc
Q 014817 284 AAETLVDRLADFDKCDAERALATVELLCR--IPAGCAEFAEH 323 (418)
Q Consensus 284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~ 323 (418)
+++.|..-|.+.++.++-+||.+|..|+. ++..+..+..+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 56677888888778889999999999994 45566666665
No 302
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.76 E-value=4.1e+02 Score=22.94 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccc-cccCCChhHHHHHHHHHhcC
Q 014817 102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN-VKTASSPELAHESLALLVMF 180 (418)
Q Consensus 102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~~v~~~a~~~L~~l 180 (418)
+.+..+++...++ .+...+.-+++.+.++-......+..+........+++.+.+... .....+..++..++..+.|+
T Consensus 89 ~~l~~~l~~~~~~-~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~ 167 (253)
T 3gae_A 89 SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY 167 (253)
T ss_dssp GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH
Confidence 3444555554432 233456788999999886544356655544334555554422110 00001455677777777787
Q ss_pred CCChhHHHhhcccCCchHHHHHHhcC---------CCHHHHHHHHHHHHHHH
Q 014817 181 PLTETECMEIASDADKITSLSSLLFH---------SSIEVRVNSAALIEIVL 223 (418)
Q Consensus 181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~---------~~~~~~~~a~~~L~~L~ 223 (418)
+.-....+. +......+++.+.. .+.|....++.+|++|.
T Consensus 168 av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 168 SALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp HHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 653211111 23345566666652 37789999999999995
No 303
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.71 E-value=36 Score=24.33 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817 12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63 (418)
Q Consensus 12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~ 63 (418)
..+|..|.||.|.-. +-|.. +.++.. ..+.-.|-.|++.+.
T Consensus 18 ~~L~t~F~CPfCnh~--~sV~v----kidk~~-----~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHE--KSCDV----KMDRAR-----NTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCS--SCEEE----EEETTT-----TEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCC--CeEEE----EEEccC-----CEEEEEcccCCCeEE
Confidence 478999999999873 22322 233321 123455888887653
No 304
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=1.7e+02 Score=20.55 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCCCcccCcCccccccC-CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817 13 QIPYHFRCPISLELMCD-PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65 (418)
Q Consensus 13 ~~~~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~ 65 (418)
..+..-.|+-|.+...+ -.+..-|..|-..| ..|-.|+.+|...
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 11 QAPARETCVECQKTVYPMERLLANQQVFHISC---------FRCSYCNNKLSLG 55 (91)
T ss_dssp CSSSSCBCTTTCCBCCTTSEEECSSSEEETTT---------CBCTTTCCBCCTT
T ss_pred CCCCCCcCccCCCccCCceeEEECCCEECCCC---------CeeCCCCCCCCCC
Confidence 33444578888887764 33344555554433 5677777777544
No 305
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.56 E-value=26 Score=29.35 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=15.5
Q ss_pred cCCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817 33 VCTGQTYDRPSIESWVATGNTTCPVTRSP 61 (418)
Q Consensus 33 ~~~g~~~~r~~i~~~~~~~~~~cp~~~~~ 61 (418)
..|||+|+-. .....||.|+.+
T Consensus 159 ~~CG~~~~g~-------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT-------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE-------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC-------CCCCCCCCCcCC
Confidence 4599999832 223489999876
No 306
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.31 E-value=1.7e+02 Score=20.04 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=10.5
Q ss_pred CcccCcCccccccC
Q 014817 16 YHFRCPISLELMCD 29 (418)
Q Consensus 16 ~~~~Cpi~~~~~~d 29 (418)
..|.|++|...|..
T Consensus 7 ~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 7 GPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCBTTTTBCCCC
T ss_pred cCeECCCCCCccCC
Confidence 34789999887754
No 307
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.03 E-value=25 Score=17.77 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=5.9
Q ss_pred ccCcCcccccc
Q 014817 18 FRCPISLELMC 28 (418)
Q Consensus 18 ~~Cpi~~~~~~ 28 (418)
|.|++|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 45666555444
Done!