Query 014820
Match_columns 418
No_of_seqs 371 out of 1489
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.6E-36 5.5E-41 291.8 30.2 359 20-417 7-405 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.3E-35 2.9E-39 276.7 31.1 347 20-417 23-381 (451)
3 3o7q_A L-fucose-proton symport 100.0 7.5E-34 2.6E-38 269.1 37.5 325 21-414 22-379 (438)
4 2gfp_A EMRD, multidrug resista 100.0 3.4E-31 1.2E-35 245.7 17.5 316 28-417 3-325 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 7.9E-29 2.7E-33 238.1 26.3 337 55-418 49-422 (491)
6 2cfq_A Lactose permease; trans 99.9 3.9E-25 1.3E-29 207.8 17.5 316 42-417 24-347 (417)
7 2xut_A Proton/peptide symporte 99.9 1.3E-23 4.5E-28 203.4 20.2 164 34-197 21-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 5.5E-14 1.9E-18 133.0 21.3 170 29-198 256-433 (451)
9 2cfq_A Lactose permease; trans 99.5 7.1E-14 2.4E-18 131.0 15.1 143 59-201 258-403 (417)
10 3o7q_A L-fucose-proton symport 99.5 4.7E-13 1.6E-17 126.1 15.6 150 42-194 275-428 (438)
11 4gc0_A D-xylose-proton symport 99.4 2.5E-12 8.7E-17 123.0 15.3 171 32-202 284-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 6.1E-12 2.1E-16 120.4 14.0 154 43-197 301-470 (491)
13 2gfp_A EMRD, multidrug resista 99.2 1.9E-11 6.5E-16 112.6 5.8 153 29-184 203-362 (375)
14 2xut_A Proton/peptide symporte 98.8 6.9E-09 2.4E-13 100.0 9.1 135 61-195 336-499 (524)
15 2g9p_A Antimicrobial peptide l 71.6 2.2 7.7E-05 20.2 1.5 14 79-92 2-15 (26)
16 4dve_A Biotin transporter BIOY 28.8 1.5E+02 0.005 23.7 6.3 25 66-90 99-123 (198)
17 3arc_T Photosystem II reaction 23.4 91 0.0031 16.4 2.9 12 192-203 17-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.6e-36 Score=291.80 Aligned_cols=359 Identities=18% Similarity=0.214 Sum_probs=262.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC--------CcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 91 (418)
+++.+.+.++.+++.+..+++...++...|.+.++++. +..+.|++.+++.+|+.+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45667777777888899999999999999988887743 2345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH
Q 014820 92 GFLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI 152 (418)
Q Consensus 92 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~ 152 (418)
+++++.+++.++.++++ +++|+++++++|+++|++.|.. ++...+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999887 4789999999999999999998 8888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--------CcchHHHHHHhHHHHHHHHHHHhhccCchhHHHhhcChHHHHHHHHHHHHh
Q 014820 153 FSSFWTIGSVSEAIGAWIIMP--------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 224 (418)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~l~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (418)
.+.+..+|..+++.++..... ..+||..+.+..++.++..+..+++||+|+++..+++.+++++..++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999999988877653 246888888888888888888889999999999999999988887766543
Q ss_pred cCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 225 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 304 (418)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
+..+.+.. +.++ ..+++++.......++.+ +..+......+......+....
T Consensus 247 ~~~~~~~~-----------------~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 247 TLATQAVQ-----------------EIKH---------SLDHGRKTGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHHHHHHH-----------------HHHH---------HHHHHHHHTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHH
T ss_pred chhHHHHH-----------------HHHH---------HHHhhhhhhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHh
Confidence 22110000 0000 000000011111112211 2222223333333333444555
Q ss_pred HHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----hc
Q 014820 305 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQ 380 (418)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~----~~ 380 (418)
+.+.+.... +.+...........++..+++.++++++.||+|||+.++.+...++++++.+.. ..
T Consensus 299 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 299 YAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence 555554332 355556666777788899999999999999999999999998888887776654 12
Q ss_pred hhHHHHHHHHH-HHHHHHhhhHhHhhhhcccccccccc
Q 014820 381 SNILTTGLLFG-ARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
..+...+..++ ......+..++.+.+.+|++|++.|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH
Confidence 22222222222 22333445578899999999999996
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.3e-35 Score=276.68 Aligned_cols=347 Identities=12% Similarity=0.105 Sum_probs=268.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH
Q 014820 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (418)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 99 (418)
++.+++.+..+++..+..+.+...+++..|.+.+++ .+..+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 456677788888888888999889999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014820 100 TAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (418)
Q Consensus 100 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 174 (418)
.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 88889999999999999999999999999999999999998888
Q ss_pred cc-hHHHHHHhHHHHHHHH-HHHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccch
Q 014820 175 LD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (418)
Q Consensus 175 ~~-w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
.+ ||+.|++.+++.++.. +..+++||+|+....+++. +.+ .+ .+ .+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~------~~-~~----~~~- 230 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-------------------EYK------ND-YP----DDY- 230 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-------------------TTC------CC-----------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-------------------hhc------cc-cc----ccc-
Confidence 88 9999999888877654 4456678776421000000 000 00 00 000
Q ss_pred hhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHH
Q 014820 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (418)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (418)
+ ++.+++........++++++ +.++...+..+.....++....+.|.+..+. .+.+..+.+
T Consensus 231 ---~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~ 291 (451)
T 1pw4_A 231 ---N---EKAEQELTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSS 291 (451)
T ss_dssp --------------CCTHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHH
T ss_pred ---h---hhhhcccccccchHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHH
Confidence 0 00000001111123555554 3445555556666677777888889887542 367888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhh--chhHHHHHHHHHHHHHHHhhhHhHhhhh
Q 014820 333 IDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYA 407 (418)
Q Consensus 333 ~~~~~~~~~~~~g~~~~g~l~d~~--grr~~l~~~~~~~~-~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
.......++.+++.++.|++.||+ +||+.+..+..+.. ++++++.+. .+.+......++.+++.+...+..+.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 371 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 888899999999999999999999 99998887777666 555555543 2455566667777787788888889999
Q ss_pred cccccccccc
Q 014820 408 AEVKLMTLFT 417 (418)
Q Consensus 408 ~e~~p~~~R~ 417 (418)
.|.+|++.|+
T Consensus 372 ~~~~~~~~~g 381 (451)
T 1pw4_A 372 LELAPKKAAG 381 (451)
T ss_dssp HHTSCTTHHH
T ss_pred HHHhchhhhh
Confidence 9999999876
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.5e-34 Score=269.12 Aligned_cols=325 Identities=10% Similarity=0.014 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHH
Q 014820 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT 100 (418)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 100 (418)
+.+++.+..+++..+..+.+....++..|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 44555666677778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-cCc
Q 014820 101 AGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRL 175 (418)
Q Consensus 101 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~ 175 (418)
+++.++. .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 88899999999999999999998 788899999999999999999999999999999999999887 554
Q ss_pred c-------------------------hHHHHHHhHHHHHHHHHHHhhc--cCchhHHHhhcChHHHHHHHHHHHHhcCCC
Q 014820 176 D-------------------------WRWLLGLSSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTK 228 (418)
Q Consensus 176 ~-------------------------w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (418)
+ ||+.|++.+++.++..+..++. ||+++. +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~------------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N------------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C-------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c-------------------
Confidence 4 9999988777666654444333 322110 0
Q ss_pred CCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014820 229 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE 308 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (418)
++++++++...+++++++++..+ ...+..+.....++....+.+.
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 239 --------------------------------HSDAKQGSFSASLSRLARIRHWR---WAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp --------------------------------CCCSSTTSHHHHHHHHTTCSHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------cccccccchhhhHHHHHhChHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122344667777764433 3333444445555666677777
Q ss_pred h-hhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014820 309 L-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTG 387 (418)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (418)
+ ..+. .+.+..+.+.......++.+++.++.|++.||++||+.+..+..+.+++.+++.+..+.+. ..
T Consensus 284 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 352 (438)
T 3o7q_A 284 YAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LI 352 (438)
T ss_dssp HHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_pred Hhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HH
Confidence 7 5433 2578888888888899999999999999999999999999999888888877777655544 34
Q ss_pred HHHHHHHHHHhhhHhHhhhhccccccc
Q 014820 388 LLFGARMCVMGAFTVSLIYAAEVKLMT 414 (418)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~e~~p~~ 414 (418)
..++.+++.+..++..+++..|.+|++
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456777888888899999999999977
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=3.4e-31 Score=245.69 Aligned_cols=316 Identities=13% Similarity=-0.016 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 014820 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (418)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 107 (418)
..+++..+....+.....+..|.+.+++|.|.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34556667777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 108 ~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..+||..|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 77888999999999999999999999999999999999999988899999998887
Q ss_pred HHHHHHH-HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCccc
Q 014820 187 PSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (418)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (418)
..++..+ ..+.+||+++.. ++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~---~~~------------------------------------------------------ 185 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVD---APR------------------------------------------------------ 185 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTT---CCC------------------------------------------------------
T ss_pred HHHHHHHHHHHHCcccCCCC---ccc------------------------------------------------------
Confidence 7766654 445566654210 000
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHH
Q 014820 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (418)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (418)
++.+.+++++++++ ..+...+..+.....++....+.|.+..+. .+.++.+.+.......++.+++
T Consensus 186 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 186 -TRLLTSYKTLFGNS---GFNCYLLMLIGGLAGIAAFEACSGVLMGAV----------LGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp -CCTTTCSTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----------HHHHHHHHHHHHHTHHHHHHHH
T ss_pred -ccHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHH
Confidence 00011233444442 333344444444555555555666554321 2456667777888888888999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHh--hchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 346 LLLAAILVDTAGRKLSITIMFTL-SCLFLL--PLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 346 ~~~~g~l~d~~grr~~l~~~~~~-~~~~~~--~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
.++.+++.||.+++. ..+... ..++.. .... ..+.+...+..++.+++.+...+....+..|.+| +.|+
T Consensus 252 ~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 252 AWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAG 325 (375)
T ss_dssp HHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc
Confidence 999999999988732 222222 222222 1222 2244445566677788888888999999999998 6665
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=7.9e-29 Score=238.13 Aligned_cols=337 Identities=12% Similarity=-0.015 Sum_probs=211.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhh-hcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HH
Q 014820 55 WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132 (418)
Q Consensus 55 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~ 132 (418)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|++.|++.+.. +.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999988 88
Q ss_pred HHHHHHhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHHhhc-cCchh----HH
Q 014820 133 FLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ-PESPR----YL 205 (418)
Q Consensus 133 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~ 205 (418)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++. ++..+ ..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 8899999999998 77788889999999999999999999998999999998877666654443322 21110 00
Q ss_pred HhhcChHHHHHHHHH--------------HHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhh
Q 014820 206 CLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS 271 (418)
Q Consensus 206 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (418)
..+.+.++.++..+. ....+..+ .++...... ............... ++...
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~ 274 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLT-----IVAIAIPVFYFAWMI-------SSVKV 274 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHH-----HHHHHHHHHHHHHHC------------
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhh-----HHHHHHHHHHHHHHh-------hcccc
Confidence 001111222221111 00001000 000000000 000000000000000 00000
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHH
Q 014820 272 LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI 351 (418)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 351 (418)
...+ +++. ...+......+.....+.....+.+.+..+.. +.+....+.......+..+++.++.++
T Consensus 275 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 275 TSTE--HLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAAERV----------DSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp ---------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC----------CCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred cHHH--HHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh----------ccCccCHHHHhccchHHHHHHHHHHHH
Confidence 0000 0000 11112222222222333333334444443211 233234445556667788888999999
Q ss_pred HHhhhchhHHHH-----HHHHHHHHHHHHHHhh---------chhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 352 LVDTAGRKLSIT-----IMFTLSCLFLLPLVTY---------QSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 352 l~d~~grr~~l~-----~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
+.||++||+... .+..+.+++.+++... .+.+......++.+++.+...+..+.++.|.+|++.|+
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 999999886544 6666666666555542 24455666677777888877889999999999999997
Q ss_pred C
Q 014820 418 V 418 (418)
Q Consensus 418 ~ 418 (418)
.
T Consensus 422 ~ 422 (491)
T 4aps_A 422 Q 422 (491)
T ss_dssp S
T ss_pred H
Confidence 4
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=3.9e-25 Score=207.76 Aligned_cols=316 Identities=14% Similarity=0.057 Sum_probs=191.5
Q ss_pred HHHHhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHH---HHHhhhhhHH-HH
Q 014820 42 MILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG---LLSSFSPNYI-TL 116 (418)
Q Consensus 42 ~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l 116 (418)
....+..|. +.+++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+.++.. ....+++... .+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 456789999999999999999999999999999999999999998887765432 1122222211 23
Q ss_pred HHHHHHHHhhhhhh-HHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHH
Q 014820 117 ITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 193 (418)
Q Consensus 117 ~~~r~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~ 193 (418)
...+++.|++.|.. +...+...++.++ ++|+...+....+..+|..++|.+++++.+ .+||..|++.++..++..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 34555555554443 2223333333332 456777788888888999999999998876 5899999877766544444
Q ss_pred HHhhccCchhHHHhhcChHHHHHHHHHHHHhcCCCCCCCcccccCCCCCCCCCCCccchhhcccCCCCCcccccchhhHH
Q 014820 194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 273 (418)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (418)
..++.+|+++. +.+. + +. ++ +++++....++
T Consensus 183 ~~~~~~~~~~~---~~~~---------------~----------~~---~~------------------~~~~~~~~~~~ 213 (417)
T 2cfq_A 183 LLFFAKTDAPS---SATV---------------A----------NA---VG------------------ANHSAFSLKLA 213 (417)
T ss_dssp HSCSSCCCCSC---SSCS---------------S----------SS---SS------------------SCCCCCCHHHH
T ss_pred HHHHcCccccc---cccc---------------c----------cc---cc------------------cccccccHHHH
Confidence 44444432210 0000 0 00 00 00001112245
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccCCCCCChhHHHHHHHHHhhhhHHHHHHHHHH
Q 014820 274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 353 (418)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 353 (418)
+++++++..+..... .+.....++....+.|.+..+.. +..+.+....+....+..++.+++.++.++++
T Consensus 214 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~ 283 (417)
T 2cfq_A 214 LELFRQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSFF-------ATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283 (417)
T ss_dssp HHHTTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTS-------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------hccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556654433322222 22222233333333454442210 00011233445556666778888999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhHhHhhhhcccccccccc
Q 014820 354 DTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEVKLMTLFT 417 (418)
Q Consensus 354 d~~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 417 (418)
||+|||+.+..+..+.++..+.+.+..+.+...+..++.+++.....+..+.+..|.+|++.|+
T Consensus 284 dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T 2cfq_A 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999998888888877766666555545544555555555555666788999999999886
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=1.3e-23 Score=203.41 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhh-hhhhhhhcC------CCcchhHHHHHHHHHHHHHHHhHHHHhhhhh-cchHHHHHHHHHHHHHHH
Q 014820 34 WVAEAMEIMILSFV-GPTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGL 105 (418)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~ 105 (418)
.+......+..... .+++.+++| ++..+.+++.+.+.+++.++++++|+++||+ |||+++.++.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333333333333 445677889 9999999999999999999999999999999 999999999999999999
Q ss_pred HHhhhh-hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHH---HHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 014820 106 LSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 106 ~~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 180 (418)
+..+++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..+||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 999998 9999999999999999988 8888999999999999877766 8999999999999999999888999999
Q ss_pred HHHhHHHHHHHHHHHhh
Q 014820 181 LGLSSIPSFILLAFLGF 197 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (418)
|++.+++.++..+..++
T Consensus 181 f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888776665544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.61 E-value=5.5e-14 Score=132.97 Aligned_cols=170 Identities=15% Similarity=0.017 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhh--cchHHHHHHHHHHH-HHH
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGFLGEALVTA-GAG 104 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~ 104 (418)
...+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 33344444444455556666766665 899999999999999999999999999999999 99999888877766 666
Q ss_pred HHHhhh--hhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcCcchHHH
Q 014820 105 LLSSFS--PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMPRLDWRWL 180 (418)
Q Consensus 105 ~~~~~~--~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~ 180 (418)
++..+. .+.+.+.+..++.|++.+.. +....++.|.+|+++|+++.|+.+....+ |..++|.+.+.+.+..||+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 666665 36777888888999988777 66778999999999999999999999999 999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhc
Q 014820 181 LGLSSIPSFILLAFLGFQ 198 (418)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (418)
|++.+++.++..+..++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888777765554443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=7.1e-14 Score=130.96 Aligned_cols=143 Identities=9% Similarity=-0.021 Sum_probs=119.8
Q ss_pred cchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh-HHHHHHH
Q 014820 59 STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWF 137 (418)
Q Consensus 59 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~~ 137 (418)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888889999999999999999999999998888888878888888888888888888887666 5667799
Q ss_pred HhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHHHHHHHHHHH-hhccCc
Q 014820 138 LEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL-GFQPES 201 (418)
Q Consensus 138 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 201 (418)
.|.+|++.||++.++ ++....+|..++|.+++++.+..|++..|.+.+++.++..+.. ...+|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999 5888899999999999999888889999988887777765543 334544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=4.7e-13 Score=126.06 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=121.8
Q ss_pred HHHHhhhhhh-hh-hcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014820 42 MILSFVGPTV-KS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITL 119 (418)
Q Consensus 42 ~~~~~~~~~~-~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (418)
.......|.+ .+ .+|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.++..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3444445555 44 459999999999999999999999999999999999999999999999998888888877665544
Q ss_pred HHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hHHHHHHhHHHHHHHHHH
Q 014820 120 RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILLAF 194 (418)
Q Consensus 120 r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~~ 194 (418)
++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..| ++..|.+.++..++..+.
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7888888877 77788888999866 888888877 556999999999999998888 998888765554444333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.41 E-value=2.5e-12 Score=123.00 Aligned_cols=171 Identities=16% Similarity=0.067 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhh-
Q 014820 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS- 110 (418)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~- 110 (418)
...+........+....+.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 3334444444555666778888888888778888888889999999999999999999999999888888777655432
Q ss_pred ---hhHHHHHH--HHHHHHhhhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc------CcchHH
Q 014820 111 ---PNYITLIT--LRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------RLDWRW 179 (418)
Q Consensus 111 ---~~~~~l~~--~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~w~~ 179 (418)
.+.+..++ ..+..+++.+..++...+.+|.+|++.|++++|+......+|..+++.+.+.+.+ ..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 11122222 2233333444446777899999999999999999999999999988887766543 235566
Q ss_pred HHHHhHHHHHHH-HHHHhhccCch
Q 014820 180 LLGLSSIPSFIL-LAFLGFQPESP 202 (418)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~ 202 (418)
.|++.++++++. ++.++++||++
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHheecCCC
Confidence 777777777766 44567899984
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=6.1e-12 Score=120.36 Aligned_cols=154 Identities=15% Similarity=-0.036 Sum_probs=119.8
Q ss_pred HHHhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHH-----HHHHHHHHHHHHHhhhh-----
Q 014820 43 ILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL-----GEALVTAGAGLLSSFSP----- 111 (418)
Q Consensus 43 ~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~----- 111 (418)
......|.+. +.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444 446777678888899999999999999999999999987654 67777777766665543
Q ss_pred ----hHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHhHH
Q 014820 112 ----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (418)
Q Consensus 112 ----~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~ 186 (418)
+.+.+.+.-++.|++.+.. +....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...|.+.++
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~ 459 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL 459 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 6777788889999999887 7788899999999999999999999999999999999888765 467777777777
Q ss_pred HHHHHHHHHhh
Q 014820 187 PSFILLAFLGF 197 (418)
Q Consensus 187 ~~~~~~~~~~~ 197 (418)
..++..+..++
T Consensus 460 ~~~~~~~~~~~ 470 (491)
T 4aps_A 460 GSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666544443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.17 E-value=1.9e-11 Score=112.60 Aligned_cols=153 Identities=17% Similarity=0.065 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHhHHHHhhhhhcchHHHHHHHHH-HHHHHH-
Q 014820 29 YAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV-TAGAGL- 105 (418)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~- 105 (418)
...+..+.............|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33344444444555556666766555 8999999999999999999999999999999999832 333322 222222
Q ss_pred -HHhh--hhhHHHHHHHHHHHHhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Q 014820 106 -LSSF--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 181 (418)
Q Consensus 106 -~~~~--~~~~~~l~~~r~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~ 181 (418)
.... .++.+.+++..++.|++.+.. +...+++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 1122 236777778888999999887 788889999998 89999999999999999999999988887777777776
Q ss_pred HHh
Q 014820 182 GLS 184 (418)
Q Consensus 182 ~~~ 184 (418)
.+.
T Consensus 360 ~~~ 362 (375)
T 2gfp_A 360 LMT 362 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.83 E-value=6.9e-09 Score=99.95 Aligned_cols=135 Identities=10% Similarity=-0.011 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHhh----hhhcc----hHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 014820 61 EESLITTSVFAGLVVGAYAWGLVA----DNYGR----RMGFLGEALVTAGAGLLSSFS---------PNYITLITLRCLV 123 (418)
Q Consensus 61 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 123 (418)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 466666666677777777777765 55543 356677888888887777664 3677788888999
Q ss_pred Hhhhhhh-HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCc--ch---------HHHHHHhHHHHHHH
Q 014820 124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--DW---------RWLLGLSSIPSFIL 191 (418)
Q Consensus 124 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w---------~~~~~~~~~~~~~~ 191 (418)
|++.+.. +...+++.|..|+++||+++|+.+....+|..+++.+.+.+.+.. +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999888 777789999999999999999999999999999999999887632 23 33355555555555
Q ss_pred HHHH
Q 014820 192 LAFL 195 (418)
Q Consensus 192 ~~~~ 195 (418)
.+..
T Consensus 496 ~~~~ 499 (524)
T 2xut_A 496 AIVF 499 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=71.62 E-value=2.2 Score=20.16 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=11.6
Q ss_pred HHHHhhhhhcchHH
Q 014820 79 AWGLVADNYGRRMG 92 (418)
Q Consensus 79 ~~g~l~dr~Grr~~ 92 (418)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999964
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.85 E-value=1.5e+02 Score=23.67 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhcch
Q 014820 66 TTSVFAGLVVGAYAWGLVADNYGRR 90 (418)
Q Consensus 66 ~s~~~~~~~i~~~~~g~l~dr~Grr 90 (418)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456677777788888888876543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.39 E-value=91 Score=16.38 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=7.5
Q ss_pred HHHHhhccCchh
Q 014820 192 LAFLGFQPESPR 203 (418)
Q Consensus 192 ~~~~~~~~~~~~ 203 (418)
+....+++|.|+
T Consensus 17 iFFAI~FRePPr 28 (32)
T 3arc_T 17 FFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHhhhhcCCCC
Confidence 344556778775
Done!