BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014821
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + + D+V+ C G
Sbjct: 124 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSEEFDYVVCCTG 163
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 164 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSSSAEDIG 213
Query: 220 MEC 222
+C
Sbjct: 214 SQC 216
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 4 RIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 64 SSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + + D+V+ C G
Sbjct: 124 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSEEFDYVVCCTG 163
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 164 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 213
Query: 220 MEC 222
+C
Sbjct: 214 SQC 216
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + + D+V+ C G
Sbjct: 124 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSEEFDYVVCCTG 163
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 164 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 213
Query: 220 MEC 222
+C
Sbjct: 214 SQC 216
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 68
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 69 SSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 128
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + D+V+ C G
Sbjct: 129 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSAAFDYVVCCTG 168
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 169 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 218
Query: 220 MEC 222
+C
Sbjct: 219 SQC 221
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 68
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 69 SSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 128
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + D+V+ C G
Sbjct: 129 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSAAFDYVVCCTG 168
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 169 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 218
Query: 220 MEC 222
+C
Sbjct: 219 SQC 221
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 68
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 69 SSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 128
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + D+V+ C G
Sbjct: 129 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSAAFDYVVCCTG 168
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 169 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 218
Query: 220 MEC 222
+C
Sbjct: 219 SQC 221
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 106/243 (43%), Gaps = 55/243 (22%)
Query: 5 QIAIVGAGVSG---LLACKYLLLKGFHP---IVFEARSDIGGAWIKTVETTMLQT----- 53
+IAI+GAG SG L A + KG + FE ++D GG W T T + +
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 68
Query: 54 -----------PKQLYQFSDYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFN 99
PK+ +F+DY + + +P + DYI+ +RK+I+FN
Sbjct: 69 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 128
Query: 100 RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159
V +EF N + Q F TV V+D + D+V+ C G
Sbjct: 129 TAVRHVEF--------------NEDSQTF------TVTVQDHTTDTIYSAAFDYVVCCTG 168
Query: 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219
FS P +PEF +G E F G+++H+ D+ D A K K V +VG SA DI
Sbjct: 169 HFS-TPYVPEF---EGFEKFGGRILHAHDFRD------ALEFKDKTVLLVGSSYSAEDIG 218
Query: 220 MEC 222
+C
Sbjct: 219 SQC 221
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 49/251 (19%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV---ETTMLQTPKQLY 58
E+ + +VGAG SGL A L G V E D+GG W +++ + Y
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCY 74
Query: 59 QFS-----DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGE 113
FS ++ W T + ++L YI A FDLR I F+ V F
Sbjct: 75 SFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF------ 124
Query: 114 DEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
DE + WTV NH + + ++I+ G+ S VP +P FP
Sbjct: 125 DEAT--------------NTWTVDT----NHGDRI-RARYLIMASGQLS-VPQLPNFP-- 162
Query: 174 KGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233
G + F G + H+ ++ + G+RV V+G S + ++ +
Sbjct: 163 -GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELF 213
Query: 234 VLYRTEHWNIP 244
V RT H+ +P
Sbjct: 214 VFQRTPHFAVP 224
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 49/251 (19%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV---ETTMLQTPKQLY 58
E+ + +VGAG SGL A L G V E D+GG W +++ + Y
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 74
Query: 59 QFS-----DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGE 113
FS ++ W T + ++L YI A FDLR I F+ V F
Sbjct: 75 SFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF------ 124
Query: 114 DEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
DE + WTV NH + + ++I+ G+ S VP +P FP
Sbjct: 125 DEAT--------------NTWTVDT----NHGDRI-RARYLIMASGQLS-VPQLPNFP-- 162
Query: 174 KGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233
G + F G + H+ ++ + G+RV V+G S + ++ +
Sbjct: 163 -GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELF 213
Query: 234 VLYRTEHWNIP 244
V RT H+ +P
Sbjct: 214 VFQRTPHFAVP 224
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 49/251 (19%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV---ETTMLQTPKQLY 58
E+ + +VGAG SGL A L G V E D+GG W +++ + Y
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 74
Query: 59 QFS-----DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGE 113
FS ++ W T + ++L YI A FDLR I F+ V F
Sbjct: 75 SFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF------ 124
Query: 114 DEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
DE + WTV NH + + ++I+ G+ S VP +P FP
Sbjct: 125 DEAT--------------NTWTVDT----NHGDRI-RARYLIMASGQLS-VPQLPNFP-- 162
Query: 174 KGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233
G + F G + H+ ++ + G+RV V+G S + ++ +
Sbjct: 163 -GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELF 213
Query: 234 VLYRTEHWNIP 244
V RT H+ +P
Sbjct: 214 VFQRTPHFAVP 224
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 49/251 (19%)
Query: 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV---ETTMLQTPKQLY 58
E+ + +VGAG SGL A L G V E D+GG W +++ + Y
Sbjct: 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 74
Query: 59 QFS-----DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGE 113
FS ++ W T + ++L YI A FDLR I F+ V F
Sbjct: 75 SFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF------ 124
Query: 114 DEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPK 173
DE + WTV NH + + ++I+ G+ S VP +P FP
Sbjct: 125 DEAT--------------NTWTVDT----NHGDRI-RARYLIMASGQLS-VPQLPNFP-- 162
Query: 174 KGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233
G + F G + H+ ++ + G+RV V+G S + ++ +
Sbjct: 163 -GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELF 213
Query: 234 VLYRTEHWNIP 244
V RT H+ +P
Sbjct: 214 VFQRTPHFAVP 224
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 43/242 (17%)
Query: 8 IVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWI-KTVETTMLQTPKQLYQFS---D 62
++GAG G+ A L + G + F+ GG W + T LY+FS D
Sbjct: 46 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 105
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+ T + ++L+Y++ FDLR+H KF +V L +DE W
Sbjct: 106 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVT----SALYLDDENLWEVTT 161
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
+G EV++ +V+ VG S + N P P G + F G+
Sbjct: 162 DHG---------------------EVYRAKYVVNAVGLLSAI-NFPNLP---GLDTFEGE 196
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
IH+ + + + G+RV V+G + + + A +E+ TV RT ++
Sbjct: 197 TIHTAAWPE------GKSLAGRRVGVIGTGSTGQQVI--TSLAPEVEH-LTVFVRTPQYS 247
Query: 243 IP 244
+P
Sbjct: 248 VP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 43/242 (17%)
Query: 8 IVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWI-KTVETTMLQTPKQLYQFS---D 62
++GAG G+ A L + G + F+ GG W + T LY+FS D
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 72
Query: 63 YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWN 122
+ T + ++L+Y++ FDLR+H KF +V L +DE W
Sbjct: 73 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVT----SALYLDDENLWEVTT 128
Query: 123 GNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK 182
+G EV++ +V+ VG S + N P P G + F G+
Sbjct: 129 DHG---------------------EVYRAKYVVNAVGLLSAI-NFPNLP---GLDTFEGE 163
Query: 183 VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242
IH+ + + + G+RV V+G + + + A +E+ TV RT ++
Sbjct: 164 TIHTAAWPE------GKSLAGRRVGVIGTGSTGQQVI--TSLAPEVEH-LTVFVRTPQYS 214
Query: 243 IP 244
+P
Sbjct: 215 VP 216
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 65/255 (25%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
+ +VGAG++GL A +G FEA S +GG W +++++ + +P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 55 KQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVG--IEFEGLSG 112
+L Q ++ W + T ++L Y++ A FDLR+ I+F+ +V ++ EGL
Sbjct: 84 -ELEQ--EWNWSEKYAT----QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL-- 134
Query: 113 EDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPP 172
+WTV + S F+++ G S+ N P F
Sbjct: 135 --------------------RWTVRTDRGDEVSAR-----FLVVAAGPLSNA-NTPAF-- 166
Query: 173 KKGPEAFHGKVIHSMDY--SDMDYEAAANLVKGKRVTVVGLQKSAL-DIAMECTTANGLE 229
G + F G ++H+ + +D+ GKRV V+G S + I + A L
Sbjct: 167 -DGLDRFTGDIVHTARWPHDGVDF-------TGKRVGVIGTGSSGIQSIPIIAEQAEQL- 217
Query: 230 NPCTVLYRTEHWNIP 244
V R+ +++IP
Sbjct: 218 ---FVFQRSANYSIP 229
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 65/255 (25%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
+ +VGAG++GL A +G FEA S +GG W +++++ + +P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 55 KQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVG--IEFEGLSG 112
+L Q ++ W + T ++L Y++ A FDLR+ I+F+ +V ++ EGL
Sbjct: 84 -ELEQ--EWNWSEKYAT----QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL-- 134
Query: 113 EDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPP 172
+WTV + S F+++ G S+ N P F
Sbjct: 135 --------------------RWTVRTDRGDEVSAR-----FLVVAAGPLSNA-NTPAF-- 166
Query: 173 KKGPEAFHGKVIHSMDY--SDMDYEAAANLVKGKRVTVVGLQKSAL-DIAMECTTANGLE 229
G + F G ++H+ + +D+ GKRV V+G S + I + A L
Sbjct: 167 -DGLDRFTGDIVHTARWPHDGVDF-------TGKRVGVIGTGSSGIQSIPIIAEQAEQL- 217
Query: 230 NPCTVLYRTEHWNIP 244
V R+ +++IP
Sbjct: 218 ---FVFQRSANYSIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 65/255 (25%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-----------IKTVETTMLQTP 54
+ +VGAG++GL A +G FEA S +GG W +++++ + +P
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 55 KQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVG--IEFEGLSG 112
+L Q ++ W + T ++L Y++ A FDLR+ I+F+ +V ++ EGL
Sbjct: 84 -ELEQ--EWNWSEKYAT----QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL-- 134
Query: 113 EDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPP 172
+WTV + S F+++ G S+ N P F
Sbjct: 135 --------------------RWTVRTDRGDEVSAR-----FLVVAAGPLSNA-NTPAF-- 166
Query: 173 KKGPEAFHGKVIHSMDY--SDMDYEAAANLVKGKRVTVVGLQKSAL-DIAMECTTANGLE 229
G + F G ++H+ + +D+ GKRV V+G S + I + A L
Sbjct: 167 -DGLDRFTGDIVHTARWPHDGVDF-------TGKRVGVIGTGSSGIQSIPIIAEQAEQL- 217
Query: 230 NPCTVLYRTEHWNIP 244
V R+ +++IP
Sbjct: 218 ---FVFQRSANYSIP 229
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 95/248 (38%), Gaps = 49/248 (19%)
Query: 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI-KTVETTMLQTPKQLYQF------ 60
++GAGV+G+ + G + EA D+GG W L T Y +
Sbjct: 14 VIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGI 73
Query: 61 -SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWS 119
++ W + +F ++L Y+ A D+RKH +FN +V + E+++ W
Sbjct: 74 IPEWEWSE----NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYV----ENDRLW- 124
Query: 120 FWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAF 179
+ + EV F+I G S P KG ++F
Sbjct: 125 --------------------EVTLDNEEVVTCRFLISATGPLS----ASRMPDIKGIDSF 160
Query: 180 HGKVIHSMDYSDMDYEAAANLV--KGKRVTVVGLQKSALD-IAMECTTANGLENPCTVLY 236
G+ HS + D E A V GKRV V+G + + I + TA L V
Sbjct: 161 KGESFHSSRWP-TDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKEL----YVFQ 215
Query: 237 RTEHWNIP 244
RT +W P
Sbjct: 216 RTPNWCTP 223
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 82/226 (36%), Gaps = 44/226 (19%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQF 60
M+ + ++G G SGL A +L G ++ +A + GGAW + L +P
Sbjct: 1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSI 60
Query: 61 SDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLR--KHIKFNRKVVGIEFEGLSGEDEKSW 118
+P P S +P +VL Y+ Y + L + I+ R
Sbjct: 61 PGWPMPAS-QGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRV----------------- 102
Query: 119 SFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEA 178
FG R + V D + VI G + + PE+ +G E+
Sbjct: 103 -------SHFGERLR--VVARDGRQWLARA-----VISATGTWGEA-YTPEY---QGLES 144
Query: 179 FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224
F G +HS YS G RV ++G S I E +T
Sbjct: 145 FAGIQLHSAHYS------TPAPFAGMRVAIIGGGNSGAQILAEVST 184
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 95/257 (36%), Gaps = 68/257 (26%)
Query: 4 KQIAIVGAGVSGLLACKYLLL-KGFHPI-VFEARSDIGGAW-----------------IK 44
++IAI+GAG SGL+ K LL K F + +FE R GG W I
Sbjct: 9 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 68
Query: 45 TVETTM-----------------LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYA 87
T E + TP +L + D + T FP + + +Y + YA
Sbjct: 69 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF-KPQTLQFPHRHTIQEYQRIYA 127
Query: 88 SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147
L IK V+ IE G W V + K S
Sbjct: 128 Q--PLLPFIKLATDVLDIE----------------------KKDGSWVVTYKGTKAGSPI 163
Query: 148 VHQV-DFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRV 206
+ D V +C G + +VP IP KG + + V S+ +S + E L G+ V
Sbjct: 164 SKDIFDAVSICNGHY-EVPYIPNI---KGLDEYAKAVPGSVLHSSLFRE--PELFVGESV 217
Query: 207 TVVGLQKSALDIAMECT 223
VVG SA D+ T
Sbjct: 218 LVVGGASSANDLVRHLT 234
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 95/257 (36%), Gaps = 68/257 (26%)
Query: 4 KQIAIVGAGVSGLLACKYLLL-KGFHPI-VFEARSDIGGAW-----------------IK 44
++IAI+GAG SGL+ K LL K F + +FE R GG W I
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 45 TVETTM-----------------LQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYA 87
T E + TP +L + D + T FP + + +Y + YA
Sbjct: 67 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF-KPQTLQFPHRHTIQEYQRIYA 125
Query: 88 SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147
L IK V+ IE G W V + K S
Sbjct: 126 Q--PLLPFIKLATDVLDIE----------------------KKDGSWVVTYKGTKAGSPI 161
Query: 148 VHQV-DFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRV 206
+ D V +C G + +VP IP KG + + V S+ +S + E L G+ V
Sbjct: 162 SKDIFDAVSICNGHY-EVPYIPNI---KGLDEYAKAVPGSVLHSSLFRE--PELFVGESV 215
Query: 207 TVVGLQKSALDIAMECT 223
VVG SA D+ T
Sbjct: 216 LVVGGASSANDLVRHLT 232
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQ 56
++ +AIVGAG+SGL A L G V EAR +GG W T++ +L+ Q
Sbjct: 5 QRDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQ 56
+ + IVGAG SGL A + L G V EAR +GG W T++ ML+ Q
Sbjct: 8 RDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQ 61
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQ 56
++ +AIVGAG SGL A L G V EAR +GG W T++ +L+ Q
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQ 56
++ +AIVGAG SGL A L G V EAR +GG W T++ +L+ Q
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQ 56
++ +AIVGAG SGL A L G V EAR +GG W T++ +L+ Q
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K++A++GAGVSGL A L + G + VFEA GG
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQLYQFSDYP 64
+ ++G G GL A + L + GF ++ EAR IGG +W ++ YP
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--------------GYP 87
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKV 102
+ T + V I Y H L F+R V
Sbjct: 88 YEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQLYQFSDYP 64
+ ++G G GL A + L + GF ++ EAR IGG +W ++ YP
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--------------GYP 87
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKV 102
+ T + V I Y H L F+R V
Sbjct: 88 YEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKTVETTMLQTPKQLYQFSDYP 64
+ ++G G GL A + L + GF ++ EAR IGG +W ++ YP
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--------------GYP 87
Query: 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKV 102
+ T + V I Y H L F+R V
Sbjct: 88 YEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARS-----------------DIGGAWIKTVET 48
+ ++G G+SGL A K L G +V EAR D+GGA++ +
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 75
Query: 49 TMLQTPKQL 57
+L+ K+L
Sbjct: 76 RILRLSKEL 84
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT 45
K+I IVGAG++GL+A L G + EA ++ G IKT
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARS-----------------DIGGAWIKTVET 48
+ ++G G+SGL A K L G +V EAR D+GGA++ +
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 49 TMLQTPKQL 57
+L+ K+L
Sbjct: 65 RILRLSKEL 73
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARS-----------------DIGGAWIKTVET 48
+ ++G G+SGL A K L G +V EAR D+GGA++ +
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 49 TMLQTPKQL 57
+L+ K+L
Sbjct: 65 RILRLSKEL 73
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGG 40
KK++ I+GAG++GL A L G +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ +VGAG SGL A + L ++G+ ++ EA D+GG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG 428
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
M+ K+I IVGAG SG + + L KG + + R IGG
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
M+ K+I IVGAG SG + + L KG + + R IGG
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
M+ K+I IVGAG SG + + L KG + + R IGG
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42
++KK +A+VGAG +GL +G +F+A S+IGG +
Sbjct: 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 412
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 145
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
++ I+G+GVSGL A + L G + EAR +GG
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARS-----------------DIGGAWIKTVET 48
+ ++G G+SGL A K L + +V EAR D+GGA++ +
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQN 83
Query: 49 TMLQTPKQL 57
+L+ K+L
Sbjct: 84 RILRLSKEL 92
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT 45
K++ IVGAG+SGL A L G V EA S+ G +KT
Sbjct: 47 KRVVIVGAGMSGLSAAYVLANAGHQVTVLEA-SERAGGQVKT 87
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41
+A+VG G+SGL +L +G ++ E+ + +GGA
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA 54
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIKT--VETTMLQTPKQLYQFSD 62
+ ++G G +GL + L G+ V EAR+ GG W E T L Q FS+
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSE 73
Query: 63 YPWPDSVTTDFPDHNQVLDYIQ 84
+ + T P + LDY +
Sbjct: 74 GHFYNVGATRIPQSHITLDYCR 95
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E R+
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERRT 35
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + +VGAG+SGL A L G V EA GG
Sbjct: 34 KHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGG 70
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + +VGAG+SGL A L G V EA GG
Sbjct: 34 KHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGG 70
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGGAWIKT 45
++ +VGAG+SG+ A K L G ++ EA IGG KT
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT 47
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 5 QIAIVGAGVSGLLACKYLLLKGFHP-IVFEARSDIGGAWIKT 45
++ +VGAG+SG+ A K L G ++ EA IGG KT
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT 47
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40
K + IVGAG++GL A L G V EA GG
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFE 33
K Q+AI+GAG SGLL + L G ++ E
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILE 32
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36
K Q+AI+GAG SGLL + L G ++ E ++
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|2KWP|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusa
Length = 129
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLK 364
+P+ + L S L +K+ +++ I +KS DF +VVD T P K
Sbjct: 18 LPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTK 73
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin
Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin
Reductase
Length = 335
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE 47
+ + ++G+G +G A Y P+VFE S GGA + T +
Sbjct: 15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTD 57
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF-SDVPNIPEFPPKKGPEAFHGKVIHSM 187
G R WTV+ E + +V V++ GRF S P F + +A++G +
Sbjct: 123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHA 182
Query: 188 DYSDMDYEAAANLVKGKRVTVVGLQKSA 215
Y + + KG +++V L A
Sbjct: 183 TYGSGFHFHLYLMHKGGKLSVAQLALGA 210
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGFKGDVKL 380
F E+G ++D PLKT L+ +A KGD ++
Sbjct: 298 FIENGRILDYPARPLKTGLLEIAKIHKGDFRI 329
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 43 IKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76
++T++ T + + +YQ WPD PDH
Sbjct: 177 LRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDH 210
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution
pdb|2AOP|A Chain A, Sulfite Reductase: Reduced With Crii Edta, Siroheme Feii,
[4fe-4s] +1, Phosphate Bound
pdb|2GEP|A Chain A, Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii
[4fe-4s] +2, Sulfite Complex
pdb|3AOP|A Chain A, Sulfite Reductase Hemoprotein Photoreduced With Proflavine
Edta, Siroheme Feii,[4fe-4s] +1, Phosphate Bound
pdb|3GEO|A Chain A, Sulfite Reductase Hemoprotein Nitrite Complex
pdb|4AOP|A Chain A, Sulfite Reductase Hemoprotein Partially Photoreduced With
Proflavine Edta, Phosphate Partially Bound
pdb|4GEP|A Chain A, Sulfite Reductase Hemoprotein Cyanide Complex Reduced With
Crii Edta
pdb|5AOP|A Chain A, Sulfite Reductase Structure Reduced With Crii Edta,
5-Coordinate Siroheme, Siroheme Feii, [4fe-4s] +1
pdb|5GEP|A Chain A, Sulfite Reductase Hemoprotein Carbon Monoxide Complex
Reduced With Crii Edta
pdb|6GEP|A Chain A, Sulfite Reductase Hemoprotein Nitric Oxide Complex Reduced
With Proflavine Edta
pdb|7GEP|A Chain A, Sulfite Reductase Hemoprotein In Complex With A Partially
Oxidized Sulfide Species
pdb|8GEP|A Chain A, Sulfite Reductase Hemoprotein Nitrate Complex
Length = 497
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGFKGDVKL 380
F E+G ++D PLKT L+ +A KGD ++
Sbjct: 288 FIENGRILDYPARPLKTGLLEIAKIHKGDFRI 319
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGFKGDVKL 380
F E+G ++D PLKT L+ +A KGD ++
Sbjct: 361 FIENGRILDYPARPLKTGLLEIAKIHKGDFRI 392
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 349 FCEDGIVVDGQTTPLKTDLVILATGFKGDVKL 380
F E+G ++D PLKT L+ +A KGD ++
Sbjct: 361 FIENGRILDYPARPLKTGLLEIAKIHKGDFRI 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,472,804
Number of Sequences: 62578
Number of extensions: 593999
Number of successful extensions: 1340
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 112
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)