Query 014821
Match_columns 418
No_of_seqs 168 out of 1954
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 1.5E-49 3.2E-54 399.7 22.9 352 3-416 1-367 (531)
2 PLN02172 flavin-containing mon 100.0 2.9E-38 6.2E-43 314.2 28.0 202 2-239 9-237 (461)
3 COG2072 TrkA Predicted flavopr 100.0 4.5E-36 9.8E-41 297.3 29.2 331 1-377 6-347 (443)
4 KOG1399 Flavin-containing mono 100.0 3.1E-35 6.6E-40 287.2 24.6 202 1-237 4-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 1.1E-28 2.4E-33 221.0 17.5 192 7-242 1-203 (203)
6 PF13434 K_oxygenase: L-lysine 100.0 5.1E-28 1.1E-32 231.7 15.4 232 2-271 1-254 (341)
7 TIGR01292 TRX_reduct thioredox 100.0 1.4E-26 3.1E-31 219.8 25.1 259 4-416 1-270 (300)
8 COG0492 TrxB Thioredoxin reduc 99.9 4.3E-26 9.4E-31 213.8 24.0 261 1-416 1-270 (305)
9 PRK10262 thioredoxin reductase 99.9 4.4E-26 9.6E-31 218.7 24.3 264 2-416 5-284 (321)
10 COG1252 Ndh NADH dehydrogenase 99.9 3.6E-26 7.9E-31 219.2 17.7 271 1-416 1-296 (405)
11 PRK15317 alkyl hydroperoxide r 99.9 6.6E-25 1.4E-29 223.2 25.5 260 3-416 211-481 (517)
12 PRK05249 soluble pyridine nucl 99.9 7.5E-25 1.6E-29 220.5 20.9 279 1-416 3-307 (461)
13 PRK13512 coenzyme A disulfide 99.9 6.6E-25 1.4E-29 218.9 18.8 266 4-416 2-274 (438)
14 TIGR03140 AhpF alkyl hydropero 99.9 3.4E-24 7.5E-29 217.7 23.9 260 3-416 212-482 (515)
15 PRK08010 pyridine nucleotide-d 99.9 1E-24 2.2E-29 218.1 18.5 276 1-416 1-289 (441)
16 PTZ00318 NADH dehydrogenase-li 99.9 1.2E-24 2.6E-29 216.2 17.6 274 1-416 8-313 (424)
17 COG3486 IucD Lysine/ornithine 99.9 9.4E-24 2E-28 197.1 22.2 332 1-417 3-382 (436)
18 PRK06116 glutathione reductase 99.9 2.6E-24 5.7E-29 215.7 20.1 274 1-416 1-300 (450)
19 TIGR01421 gluta_reduc_1 glutat 99.9 2.3E-24 5E-29 215.5 19.2 275 2-416 1-300 (450)
20 PRK06416 dihydrolipoamide dehy 99.9 3.1E-24 6.7E-29 216.0 20.2 278 3-416 4-306 (462)
21 TIGR03143 AhpF_homolog putativ 99.9 1.3E-23 2.8E-28 215.1 23.7 176 1-240 1-177 (555)
22 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1E-23 2.2E-28 207.3 21.6 280 1-416 2-307 (454)
23 TIGR01424 gluta_reduc_2 glutat 99.9 4.1E-24 8.9E-29 213.8 18.8 274 3-416 2-298 (446)
24 PRK07251 pyridine nucleotide-d 99.9 1.6E-23 3.5E-28 209.4 22.2 269 1-416 1-288 (438)
25 PLN02507 glutathione reductase 99.9 4.5E-24 9.8E-29 215.5 18.4 279 3-416 25-335 (499)
26 PRK04965 NADH:flavorubredoxin 99.9 1.1E-23 2.3E-28 206.6 20.5 262 1-416 1-270 (377)
27 PRK06370 mercuric reductase; V 99.9 5.9E-24 1.3E-28 213.9 18.9 277 1-416 3-306 (463)
28 TIGR02053 MerA mercuric reduct 99.9 5.3E-24 1.1E-28 214.3 17.0 277 4-416 1-301 (463)
29 PRK14694 putative mercuric red 99.9 2.6E-23 5.6E-28 209.3 21.7 283 3-416 6-307 (468)
30 PRK14989 nitrite reductase sub 99.9 1.5E-23 3.3E-28 221.8 18.8 267 1-416 1-278 (847)
31 PRK06467 dihydrolipoamide dehy 99.9 4.3E-23 9.3E-28 207.6 20.7 279 2-416 3-309 (471)
32 PRK09564 coenzyme A disulfide 99.9 5.6E-23 1.2E-27 206.0 21.5 270 4-416 1-279 (444)
33 PRK09754 phenylpropionate diox 99.9 7.7E-23 1.7E-27 201.7 21.2 266 1-416 1-272 (396)
34 PRK13748 putative mercuric red 99.9 7.1E-23 1.5E-27 211.1 21.4 281 2-416 97-400 (561)
35 PRK06292 dihydrolipoamide dehy 99.9 4.1E-23 8.9E-28 207.8 18.9 283 1-416 1-303 (460)
36 PRK07818 dihydrolipoamide dehy 99.9 7.3E-23 1.6E-27 206.0 20.6 288 1-416 2-308 (466)
37 PRK05976 dihydrolipoamide dehy 99.9 8E-23 1.7E-27 206.1 20.7 291 1-416 1-315 (472)
38 PRK14727 putative mercuric red 99.9 9.7E-23 2.1E-27 205.5 20.7 280 3-416 16-318 (479)
39 PTZ00052 thioredoxin reductase 99.9 3.6E-23 7.9E-28 209.1 17.2 287 1-416 2-312 (499)
40 PRK06115 dihydrolipoamide dehy 99.9 1.2E-22 2.5E-27 204.3 20.1 281 1-416 1-310 (466)
41 PLN02546 glutathione reductase 99.9 3.9E-23 8.4E-28 209.9 16.0 274 3-416 79-385 (558)
42 TIGR01423 trypano_reduc trypan 99.9 1.4E-22 3E-27 203.6 19.1 285 2-416 2-323 (486)
43 PRK07845 flavoprotein disulfid 99.9 3E-22 6.4E-27 201.3 21.2 284 4-416 2-309 (466)
44 PTZ00058 glutathione reductase 99.9 3.9E-22 8.5E-27 202.5 21.3 295 3-416 48-370 (561)
45 TIGR01350 lipoamide_DH dihydro 99.9 7.2E-22 1.5E-26 198.9 21.3 279 3-416 1-304 (461)
46 PRK07846 mycothione reductase; 99.9 4E-22 8.6E-27 199.4 18.8 274 3-416 1-297 (451)
47 TIGR01438 TGR thioredoxin and 99.9 5.1E-22 1.1E-26 199.9 19.6 279 3-416 2-315 (484)
48 TIGR03169 Nterm_to_SelD pyridi 99.9 2.2E-22 4.8E-27 196.5 16.4 261 5-416 1-276 (364)
49 PRK06327 dihydrolipoamide dehy 99.9 1.1E-21 2.5E-26 197.7 21.5 284 1-416 1-319 (475)
50 PRK09853 putative selenate red 99.9 5.3E-22 1.2E-26 209.1 19.5 170 3-244 539-708 (1019)
51 TIGR02374 nitri_red_nirB nitri 99.9 4.6E-22 1E-26 210.7 18.9 261 6-416 1-269 (785)
52 PRK06912 acoL dihydrolipoamide 99.9 1.4E-21 3E-26 196.3 20.8 279 5-416 2-302 (458)
53 TIGR01316 gltA glutamate synth 99.9 6.5E-22 1.4E-26 197.7 18.2 167 2-240 132-306 (449)
54 PRK09897 hypothetical protein; 99.9 1.9E-20 4E-25 188.4 27.7 331 3-377 1-448 (534)
55 PRK12831 putative oxidoreducta 99.9 1.1E-21 2.3E-26 196.6 18.3 169 3-240 140-315 (464)
56 PRK11749 dihydropyrimidine deh 99.9 3.8E-21 8.3E-26 193.0 18.3 167 3-240 140-308 (457)
57 TIGR03452 mycothione_red mycot 99.9 8.3E-21 1.8E-25 190.0 19.4 273 2-416 1-300 (452)
58 KOG0405 Pyridine nucleotide-di 99.9 1.1E-20 2.5E-25 172.0 17.8 288 3-415 20-321 (478)
59 KOG0404 Thioredoxin reductase 99.9 2E-20 4.3E-25 160.6 17.9 268 4-416 9-288 (322)
60 COG4529 Uncharacterized protei 99.9 1.1E-19 2.4E-24 174.5 22.4 336 3-379 1-383 (474)
61 TIGR03315 Se_ygfK putative sel 99.8 2.4E-20 5.3E-25 197.6 19.1 166 3-240 537-702 (1012)
62 PRK12779 putative bifunctional 99.8 3.9E-20 8.4E-25 197.8 20.2 167 3-240 306-481 (944)
63 PTZ00153 lipoamide dehydrogena 99.8 1.5E-20 3.2E-25 193.5 15.4 198 3-240 116-346 (659)
64 PRK12778 putative bifunctional 99.8 3.2E-20 6.9E-25 196.8 17.7 168 3-240 431-605 (752)
65 PRK12814 putative NADPH-depend 99.8 7.9E-20 1.7E-24 190.2 18.2 166 3-240 193-358 (652)
66 KOG1336 Monodehydroascorbate/f 99.8 1.9E-19 4.2E-24 171.7 18.1 261 3-416 74-345 (478)
67 KOG2495 NADH-dehydrogenase (ub 99.8 5.1E-20 1.1E-24 172.6 13.6 281 2-416 54-364 (491)
68 PRK12770 putative glutamate sy 99.8 4.8E-19 1E-23 172.0 19.6 182 3-240 18-207 (352)
69 PRK12769 putative oxidoreducta 99.8 7.6E-19 1.6E-23 183.5 18.4 171 3-244 327-507 (654)
70 PRK12775 putative trifunctiona 99.8 8E-19 1.7E-23 189.4 18.7 169 3-240 430-606 (1006)
71 PRK12810 gltD glutamate syntha 99.8 1.1E-18 2.3E-23 175.8 18.3 164 3-237 143-313 (471)
72 TIGR01318 gltD_gamma_fam gluta 99.8 1.3E-18 2.9E-23 174.5 18.4 171 3-244 141-321 (467)
73 COG3634 AhpF Alkyl hydroperoxi 99.8 4.7E-18 1E-22 155.0 17.1 263 3-416 211-484 (520)
74 TIGR01372 soxA sarcosine oxida 99.8 1E-17 2.2E-22 181.8 22.9 241 3-387 163-422 (985)
75 TIGR03385 CoA_CoA_reduc CoA-di 99.8 8.8E-18 1.9E-22 167.5 17.9 209 84-416 51-266 (427)
76 COG1251 NirB NAD(P)H-nitrite r 99.8 2.8E-17 6E-22 164.0 18.3 266 1-416 1-274 (793)
77 KOG1335 Dihydrolipoamide dehyd 99.8 3.5E-17 7.5E-22 151.3 17.2 198 3-239 39-244 (506)
78 PLN02852 ferredoxin-NADP+ redu 99.8 5.8E-17 1.3E-21 161.4 19.5 168 3-240 26-221 (491)
79 PRK12809 putative oxidoreducta 99.8 2.9E-17 6.3E-22 170.9 18.1 168 3-241 310-487 (639)
80 KOG4716 Thioredoxin reductase 99.7 8.1E-17 1.7E-21 146.5 18.3 197 3-239 19-231 (503)
81 PRK12771 putative glutamate sy 99.7 2.9E-17 6.4E-22 169.0 17.0 165 3-240 137-302 (564)
82 PRK13984 putative oxidoreducta 99.7 3.4E-17 7.3E-22 170.1 16.9 166 3-237 283-455 (604)
83 TIGR01317 GOGAT_sm_gam glutama 99.7 3.5E-16 7.5E-21 157.8 18.2 166 4-240 144-318 (485)
84 PTZ00188 adrenodoxin reductase 99.6 5.1E-13 1.1E-17 131.3 21.0 43 3-45 39-82 (506)
85 PRK06567 putative bifunctional 99.5 1E-13 2.2E-18 145.3 16.0 37 3-39 383-419 (1028)
86 COG0493 GltD NADPH-dependent g 99.5 9.5E-14 2.1E-18 137.1 11.6 165 3-238 123-295 (457)
87 COG0446 HcaD Uncharacterized N 99.5 1.2E-12 2.5E-17 129.9 17.6 261 6-416 1-272 (415)
88 COG2081 Predicted flavoprotein 99.4 1.1E-12 2.5E-17 123.6 11.0 137 1-167 1-171 (408)
89 PF13454 NAD_binding_9: FAD-NA 99.4 7.2E-12 1.6E-16 107.0 12.1 127 7-160 1-155 (156)
90 KOG0399 Glutamate synthase [Am 99.4 5.7E-12 1.2E-16 129.8 13.2 158 4-228 1786-1949(2142)
91 PF03486 HI0933_like: HI0933-l 99.3 2.7E-11 5.9E-16 118.8 11.6 135 4-167 1-170 (409)
92 KOG1800 Ferredoxin/adrenodoxin 99.2 1.1E-10 2.4E-15 108.7 12.1 170 3-240 20-215 (468)
93 COG0644 FixC Dehydrogenases (f 99.2 3.2E-10 6.9E-15 112.0 13.1 134 1-162 1-152 (396)
94 PRK04176 ribulose-1,5-biphosph 99.2 3.4E-10 7.3E-15 104.6 11.9 138 3-162 25-173 (257)
95 KOG1346 Programmed cell death 99.1 9.2E-10 2E-14 103.5 14.2 254 4-382 179-455 (659)
96 PRK06184 hypothetical protein; 99.1 9.3E-10 2E-14 112.2 15.6 139 1-165 1-171 (502)
97 PF01494 FAD_binding_3: FAD bi 99.1 3.6E-10 7.9E-15 109.5 11.6 136 3-162 1-172 (356)
98 PRK08013 oxidoreductase; Provi 99.1 5.8E-10 1.3E-14 110.4 12.9 139 1-168 1-174 (400)
99 PF07992 Pyr_redox_2: Pyridine 99.1 3.7E-11 8E-16 107.0 3.9 153 5-210 1-159 (201)
100 PRK06834 hypothetical protein; 99.1 1.1E-09 2.3E-14 110.9 14.9 139 1-168 1-162 (488)
101 TIGR02032 GG-red-SF geranylger 99.1 6.3E-10 1.4E-14 105.1 12.4 130 4-162 1-148 (295)
102 KOG2755 Oxidoreductase [Genera 99.1 2.6E-09 5.6E-14 94.8 14.4 92 134-247 81-172 (334)
103 PRK06847 hypothetical protein; 99.1 1.7E-09 3.7E-14 106.0 14.8 131 3-162 4-163 (375)
104 PRK07494 2-octaprenyl-6-methox 99.1 9.1E-10 2E-14 108.5 12.4 133 1-162 5-167 (388)
105 TIGR00292 thiazole biosynthesi 99.1 1.5E-09 3.1E-14 100.1 12.7 139 3-162 21-170 (254)
106 PRK06183 mhpA 3-(3-hydroxyphen 99.1 3.1E-09 6.6E-14 109.3 15.6 139 2-166 9-178 (538)
107 TIGR02023 BchP-ChlP geranylger 99.1 3.2E-09 6.9E-14 104.7 15.1 131 4-163 1-156 (388)
108 PRK08773 2-octaprenyl-3-methyl 99.1 1.7E-09 3.7E-14 106.7 13.1 132 2-162 5-169 (392)
109 COG1148 HdrA Heterodisulfide r 99.1 5.2E-09 1.1E-13 100.5 15.5 92 3-141 124-218 (622)
110 PRK10157 putative oxidoreducta 99.1 2.6E-09 5.7E-14 106.5 14.2 131 3-162 5-164 (428)
111 PRK09126 hypothetical protein; 99.0 2.2E-09 4.8E-14 105.9 13.3 138 1-167 1-172 (392)
112 PLN02463 lycopene beta cyclase 99.0 2.7E-09 5.8E-14 106.3 12.8 130 3-162 28-169 (447)
113 PRK06126 hypothetical protein; 99.0 6.1E-09 1.3E-13 107.3 16.0 139 3-165 7-191 (545)
114 PRK07364 2-octaprenyl-6-methox 99.0 2.8E-09 6.2E-14 106.0 12.9 136 3-164 18-183 (415)
115 PRK08244 hypothetical protein; 99.0 5.4E-09 1.2E-13 106.4 15.0 135 3-163 2-160 (493)
116 PRK10015 oxidoreductase; Provi 99.0 5.3E-09 1.2E-13 104.2 14.2 131 3-162 5-164 (429)
117 TIGR01790 carotene-cycl lycope 99.0 4.5E-09 9.7E-14 103.6 13.0 129 5-162 1-141 (388)
118 PRK07190 hypothetical protein; 99.0 8.4E-09 1.8E-13 104.3 14.4 136 2-166 4-169 (487)
119 PRK08849 2-octaprenyl-3-methyl 99.0 6.6E-09 1.4E-13 102.3 13.1 137 1-166 1-171 (384)
120 PRK07333 2-octaprenyl-6-methox 99.0 5.8E-09 1.3E-13 103.3 12.7 132 3-163 1-168 (403)
121 PRK06753 hypothetical protein; 99.0 7.4E-09 1.6E-13 101.5 13.1 128 4-162 1-152 (373)
122 PRK08850 2-octaprenyl-6-methox 99.0 6.3E-09 1.4E-13 103.2 12.6 137 1-166 2-172 (405)
123 TIGR01988 Ubi-OHases Ubiquinon 98.9 6.8E-09 1.5E-13 102.1 12.0 129 5-162 1-163 (385)
124 PRK05732 2-octaprenyl-6-methox 98.9 7.4E-09 1.6E-13 102.3 12.2 133 1-162 1-169 (395)
125 PRK05714 2-octaprenyl-3-methyl 98.9 9.6E-09 2.1E-13 101.9 12.8 135 3-166 2-172 (405)
126 PRK07608 ubiquinone biosynthes 98.9 1E-08 2.3E-13 101.0 12.9 131 3-163 5-168 (388)
127 PRK08020 ubiF 2-octaprenyl-3-m 98.9 8.1E-09 1.8E-13 101.9 11.8 132 3-163 5-170 (391)
128 COG1635 THI4 Ribulose 1,5-bisp 98.9 7.7E-09 1.7E-13 89.8 10.0 142 4-161 31-177 (262)
129 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.1E-08 2.4E-13 100.8 12.6 132 3-163 2-163 (387)
130 PRK07236 hypothetical protein; 98.9 8.5E-09 1.8E-13 101.6 11.8 133 1-164 4-156 (386)
131 PRK08163 salicylate hydroxylas 98.9 8.6E-09 1.9E-13 101.9 11.8 132 2-162 3-166 (396)
132 TIGR02028 ChlP geranylgeranyl 98.9 2E-08 4.3E-13 99.3 14.3 140 4-166 1-164 (398)
133 PRK08132 FAD-dependent oxidore 98.9 3.1E-08 6.6E-13 102.1 16.1 135 3-163 23-186 (547)
134 PRK08243 4-hydroxybenzoate 3-m 98.9 2.3E-08 4.9E-13 98.8 14.6 137 3-164 2-165 (392)
135 PRK07588 hypothetical protein; 98.9 1.2E-08 2.7E-13 100.6 12.6 133 4-166 1-162 (391)
136 PRK11445 putative oxidoreducta 98.9 2.2E-08 4.8E-13 97.3 14.0 132 3-163 1-158 (351)
137 PRK06185 hypothetical protein; 98.9 2.7E-08 5.7E-13 98.8 13.4 134 3-162 6-169 (407)
138 PRK07045 putative monooxygenas 98.9 3.9E-08 8.4E-13 97.0 14.3 137 2-166 4-169 (388)
139 PF01266 DAO: FAD dependent ox 98.9 1.3E-08 2.9E-13 98.6 10.4 58 75-162 145-203 (358)
140 PRK06617 2-octaprenyl-6-methox 98.8 2.7E-08 5.9E-13 97.6 12.5 132 4-165 2-163 (374)
141 PRK11259 solA N-methyltryptoph 98.8 3.6E-08 7.7E-13 96.7 13.2 37 1-37 1-37 (376)
142 PF01946 Thi4: Thi4 family; PD 98.8 4E-09 8.6E-14 92.1 5.4 143 3-161 17-164 (230)
143 PRK07538 hypothetical protein; 98.8 3.8E-08 8.1E-13 97.9 13.2 138 4-164 1-167 (413)
144 PLN00093 geranylgeranyl diphos 98.8 5E-08 1.1E-12 97.6 14.1 136 3-163 39-200 (450)
145 TIGR01984 UbiH 2-polyprenyl-6- 98.8 2.4E-08 5.2E-13 98.2 11.7 129 5-162 1-162 (382)
146 COG3380 Predicted NAD/FAD-depe 98.8 2E-08 4.3E-13 89.9 9.7 127 4-160 2-158 (331)
147 TIGR00275 flavoprotein, HI0933 98.8 4.1E-08 9E-13 97.0 13.1 124 7-161 1-159 (400)
148 PLN02697 lycopene epsilon cycl 98.8 3.3E-08 7.1E-13 100.2 12.6 130 3-162 108-248 (529)
149 PRK12266 glpD glycerol-3-phosp 98.8 4.7E-08 1E-12 99.5 13.7 36 2-37 5-40 (508)
150 PF00070 Pyr_redox: Pyridine n 98.8 9.4E-08 2E-12 71.7 11.5 70 5-109 1-70 (80)
151 PF05834 Lycopene_cycl: Lycope 98.8 5.4E-08 1.2E-12 95.3 13.1 127 5-161 1-141 (374)
152 PLN02661 Putative thiazole syn 98.8 3.6E-08 7.9E-13 93.6 11.1 140 3-161 92-243 (357)
153 PRK05192 tRNA uridine 5-carbox 98.8 5.1E-08 1.1E-12 99.1 12.1 132 1-161 2-156 (618)
154 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 9.8E-08 2.1E-12 94.1 13.9 138 3-166 2-167 (390)
155 PRK13369 glycerol-3-phosphate 98.8 1.2E-07 2.5E-12 96.7 14.8 61 77-162 155-215 (502)
156 PF00890 FAD_binding_2: FAD bi 98.8 8.9E-08 1.9E-12 95.3 13.3 135 5-162 1-203 (417)
157 TIGR03219 salicylate_mono sali 98.8 7.2E-08 1.6E-12 95.9 12.3 128 4-162 1-159 (414)
158 PRK06475 salicylate hydroxylas 98.8 9E-08 1.9E-12 94.8 12.8 137 4-166 3-171 (400)
159 TIGR01989 COQ6 Ubiquinone bios 98.8 6.1E-08 1.3E-12 97.1 11.6 143 4-168 1-189 (437)
160 PF12831 FAD_oxidored: FAD dep 98.7 8.6E-09 1.9E-13 102.7 5.1 132 5-161 1-149 (428)
161 PRK05868 hypothetical protein; 98.7 1.3E-07 2.8E-12 92.7 13.2 35 4-38 2-36 (372)
162 TIGR01377 soxA_mon sarcosine o 98.7 1.3E-07 2.7E-12 93.0 13.1 34 4-37 1-34 (380)
163 PRK08274 tricarballylate dehyd 98.7 2.1E-07 4.5E-12 94.1 15.0 36 2-37 3-38 (466)
164 PRK11728 hydroxyglutarate oxid 98.7 1.2E-07 2.6E-12 93.7 12.8 37 3-39 2-40 (393)
165 PRK06996 hypothetical protein; 98.7 1.1E-07 2.5E-12 94.0 12.4 130 3-160 11-172 (398)
166 PRK08294 phenol 2-monooxygenas 98.7 2.8E-07 6.1E-12 96.1 15.8 148 2-168 31-216 (634)
167 TIGR01813 flavo_cyto_c flavocy 98.7 3.1E-07 6.7E-12 92.1 15.6 134 5-162 1-192 (439)
168 COG0579 Predicted dehydrogenas 98.7 1.8E-07 3.9E-12 91.4 13.1 40 1-40 1-42 (429)
169 PRK11101 glpA sn-glycerol-3-ph 98.7 1.8E-07 3.8E-12 96.2 13.4 34 3-36 6-39 (546)
170 PRK12409 D-amino acid dehydrog 98.7 4.4E-07 9.5E-12 90.2 15.4 35 4-38 2-36 (410)
171 PF13450 NAD_binding_8: NAD(P) 98.7 4.6E-08 1E-12 70.7 5.4 48 8-55 1-49 (68)
172 PF01134 GIDA: Glucose inhibit 98.7 1.4E-07 3E-12 91.1 10.1 126 5-161 1-151 (392)
173 COG0578 GlpA Glycerol-3-phosph 98.6 4.4E-07 9.5E-12 90.6 13.5 56 83-162 170-225 (532)
174 TIGR01789 lycopene_cycl lycope 98.6 2.8E-07 6E-12 90.1 11.8 36 5-40 1-38 (370)
175 PRK06481 fumarate reductase fl 98.6 8.4E-07 1.8E-11 90.4 15.4 38 3-40 61-98 (506)
176 PRK05945 sdhA succinate dehydr 98.6 5.7E-07 1.2E-11 93.1 14.4 39 1-39 1-41 (575)
177 PRK05976 dihydrolipoamide dehy 98.6 2.2E-06 4.7E-11 86.8 17.5 103 4-168 181-284 (472)
178 PRK06452 sdhA succinate dehydr 98.6 8.9E-07 1.9E-11 91.3 14.9 38 3-40 5-42 (566)
179 PRK07573 sdhA succinate dehydr 98.6 8.7E-07 1.9E-11 92.5 14.8 37 3-39 35-71 (640)
180 PRK08641 sdhA succinate dehydr 98.6 1E-06 2.3E-11 91.2 15.1 39 1-39 1-39 (589)
181 TIGR01350 lipoamide_DH dihydro 98.6 1.6E-06 3.4E-11 87.6 16.0 102 4-168 171-272 (461)
182 PRK06416 dihydrolipoamide dehy 98.6 2.7E-06 5.8E-11 85.9 17.5 103 4-168 173-275 (462)
183 PRK07803 sdhA succinate dehydr 98.6 9.1E-07 2E-11 92.3 14.4 36 3-38 8-43 (626)
184 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.4E-06 3E-11 86.5 14.2 105 3-170 173-277 (454)
185 PRK08275 putative oxidoreducta 98.5 1.8E-06 4E-11 89.0 15.5 138 3-162 9-200 (554)
186 PTZ00383 malate:quinone oxidor 98.5 7E-07 1.5E-11 90.1 11.9 35 3-37 45-81 (497)
187 PRK04965 NADH:flavorubredoxin 98.5 9.8E-07 2.1E-11 86.7 12.7 97 4-161 142-238 (377)
188 PRK01747 mnmC bifunctional tRN 98.5 6.1E-07 1.3E-11 94.6 11.8 35 4-38 261-295 (662)
189 PLN02985 squalene monooxygenas 98.5 1.9E-06 4.1E-11 87.7 14.8 34 3-36 43-76 (514)
190 KOG2820 FAD-dependent oxidored 98.5 1.2E-06 2.6E-11 81.1 11.9 139 3-168 7-217 (399)
191 TIGR03329 Phn_aa_oxid putative 98.5 6.3E-07 1.4E-11 90.4 11.2 34 3-36 24-59 (460)
192 TIGR03364 HpnW_proposed FAD de 98.5 8.5E-07 1.8E-11 86.7 11.8 33 4-36 1-33 (365)
193 TIGR01812 sdhA_frdA_Gneg succi 98.5 1.7E-06 3.7E-11 89.5 14.5 35 5-39 1-35 (566)
194 PRK07804 L-aspartate oxidase; 98.5 1.8E-06 4E-11 88.6 14.5 38 3-40 16-53 (541)
195 PRK07121 hypothetical protein; 98.5 6.9E-07 1.5E-11 90.9 11.2 38 3-40 20-57 (492)
196 PLN02464 glycerol-3-phosphate 98.5 1.8E-06 3.8E-11 90.0 14.2 35 3-37 71-105 (627)
197 TIGR02053 MerA mercuric reduct 98.5 4.9E-06 1.1E-10 84.1 17.1 103 4-168 167-269 (463)
198 PRK08401 L-aspartate oxidase; 98.5 2.4E-06 5.2E-11 86.2 14.8 35 4-38 2-36 (466)
199 PRK06263 sdhA succinate dehydr 98.5 2.1E-06 4.6E-11 88.3 14.2 34 3-37 7-40 (543)
200 PRK06175 L-aspartate oxidase; 98.5 2.7E-06 5.9E-11 84.9 14.2 37 3-40 4-40 (433)
201 KOG1335 Dihydrolipoamide dehyd 98.5 2.9E-06 6.3E-11 79.7 13.0 149 3-224 211-365 (506)
202 PRK07818 dihydrolipoamide dehy 98.5 6.8E-06 1.5E-10 83.1 17.0 104 4-168 173-276 (466)
203 PRK06370 mercuric reductase; V 98.5 6E-06 1.3E-10 83.4 16.6 103 4-168 172-274 (463)
204 PTZ00139 Succinate dehydrogena 98.5 3.8E-06 8.3E-11 87.4 15.5 38 3-40 29-66 (617)
205 PRK06912 acoL dihydrolipoamide 98.5 5.3E-06 1.2E-10 83.6 16.1 101 4-168 171-271 (458)
206 PRK06115 dihydrolipoamide dehy 98.5 3E-06 6.5E-11 85.6 14.3 106 3-168 174-279 (466)
207 TIGR00136 gidA glucose-inhibit 98.5 1.6E-06 3.5E-11 88.2 12.2 131 4-161 1-153 (617)
208 TIGR00551 nadB L-aspartate oxi 98.5 2.7E-06 5.8E-11 86.4 13.9 37 3-40 2-38 (488)
209 PRK06327 dihydrolipoamide dehy 98.5 7.7E-06 1.7E-10 82.8 17.2 104 4-168 184-287 (475)
210 COG1252 Ndh NADH dehydrogenase 98.4 1.6E-06 3.5E-11 84.1 11.5 131 4-212 156-300 (405)
211 PRK06069 sdhA succinate dehydr 98.4 3E-06 6.5E-11 87.8 14.3 38 3-40 5-45 (577)
212 PRK09078 sdhA succinate dehydr 98.4 4.9E-06 1.1E-10 86.4 15.8 37 3-39 12-48 (598)
213 PRK07057 sdhA succinate dehydr 98.4 5E-06 1.1E-10 86.2 15.7 36 3-38 12-47 (591)
214 TIGR01320 mal_quin_oxido malat 98.4 2.9E-06 6.3E-11 85.7 13.6 64 76-162 177-240 (483)
215 PRK07251 pyridine nucleotide-d 98.4 3.2E-06 6.9E-11 84.8 13.8 100 3-168 157-256 (438)
216 PLN02815 L-aspartate oxidase 98.4 3.3E-06 7.1E-11 87.3 14.1 37 3-40 29-65 (594)
217 PRK09754 phenylpropionate diox 98.4 2E-06 4.3E-11 85.1 12.0 96 4-161 145-240 (396)
218 PRK06854 adenylylsulfate reduc 98.4 3.6E-06 7.8E-11 87.6 14.3 35 3-37 11-47 (608)
219 PRK05249 soluble pyridine nucl 98.4 3.1E-06 6.7E-11 85.4 13.3 101 3-168 175-275 (461)
220 PRK13339 malate:quinone oxidor 98.4 5.2E-06 1.1E-10 83.6 14.6 36 3-38 6-43 (497)
221 PRK08958 sdhA succinate dehydr 98.4 6.4E-06 1.4E-10 85.4 15.7 38 3-40 7-44 (588)
222 PF00070 Pyr_redox: Pyridine n 98.4 3.2E-07 6.9E-12 68.8 4.5 35 205-242 1-35 (80)
223 PLN00128 Succinate dehydrogena 98.4 6.1E-06 1.3E-10 86.0 15.6 38 3-40 50-87 (635)
224 PRK06116 glutathione reductase 98.4 4.2E-06 9.2E-11 84.2 13.9 102 3-168 167-268 (450)
225 PRK08071 L-aspartate oxidase; 98.4 3.3E-06 7.1E-11 86.1 13.2 39 1-40 1-39 (510)
226 PRK07208 hypothetical protein; 98.4 7.2E-07 1.5E-11 90.5 8.4 44 1-44 2-45 (479)
227 COG1233 Phytoene dehydrogenase 98.4 4.1E-07 8.9E-12 92.1 6.3 53 1-53 1-54 (487)
228 PRK08626 fumarate reductase fl 98.4 6.6E-06 1.4E-10 86.2 15.3 36 3-38 5-40 (657)
229 PRK00711 D-amino acid dehydrog 98.4 6.3E-06 1.4E-10 82.0 14.2 34 5-38 2-35 (416)
230 TIGR01424 gluta_reduc_2 glutat 98.4 5.7E-06 1.2E-10 83.1 13.6 100 4-168 167-266 (446)
231 TIGR01811 sdhA_Bsu succinate d 98.4 8.4E-06 1.8E-10 84.7 14.9 34 6-39 1-34 (603)
232 PRK12842 putative succinate de 98.3 1.1E-05 2.3E-10 83.7 15.6 38 3-40 9-46 (574)
233 TIGR01421 gluta_reduc_1 glutat 98.3 8.4E-06 1.8E-10 82.0 14.0 103 3-168 166-268 (450)
234 KOG0029 Amine oxidase [Seconda 98.3 5.7E-07 1.2E-11 90.4 5.4 44 1-44 13-56 (501)
235 TIGR01176 fum_red_Fp fumarate 98.3 1E-05 2.3E-10 83.6 14.8 38 3-40 3-42 (580)
236 PRK05257 malate:quinone oxidor 98.3 6.9E-06 1.5E-10 83.1 13.1 37 2-38 4-42 (494)
237 PRK09231 fumarate reductase fl 98.3 9.5E-06 2.1E-10 84.0 14.4 38 3-40 4-43 (582)
238 PLN02927 antheraxanthin epoxid 98.3 6.4E-06 1.4E-10 85.4 12.8 34 3-36 81-114 (668)
239 PRK12835 3-ketosteroid-delta-1 98.3 1.5E-05 3.2E-10 82.6 15.5 38 3-40 11-48 (584)
240 KOG2415 Electron transfer flav 98.3 5E-06 1.1E-10 78.9 10.6 105 3-109 76-213 (621)
241 TIGR01373 soxB sarcosine oxida 98.3 1.6E-05 3.4E-10 79.0 15.1 34 3-36 30-65 (407)
242 PRK07845 flavoprotein disulfid 98.3 9.3E-06 2E-10 82.0 13.6 100 4-168 178-277 (466)
243 PLN02507 glutathione reductase 98.3 9.9E-06 2.1E-10 82.4 13.8 100 4-168 204-303 (499)
244 PF06039 Mqo: Malate:quinone o 98.3 7.4E-06 1.6E-10 79.6 12.1 61 81-165 185-246 (488)
245 PRK07846 mycothione reductase; 98.3 9E-06 1.9E-10 81.7 13.2 100 3-168 166-265 (451)
246 KOG3851 Sulfide:quinone oxidor 98.3 7.8E-06 1.7E-10 75.1 11.2 82 326-416 238-329 (446)
247 PRK08205 sdhA succinate dehydr 98.3 1.8E-05 4E-10 82.1 15.1 36 3-39 5-40 (583)
248 PRK13977 myosin-cross-reactive 98.3 8.1E-06 1.8E-10 82.5 12.0 42 2-43 21-66 (576)
249 PRK06467 dihydrolipoamide dehy 98.3 1.4E-05 3.1E-10 80.7 14.0 103 4-168 175-277 (471)
250 PRK06134 putative FAD-binding 98.3 2.1E-05 4.6E-10 81.6 15.5 39 3-41 12-50 (581)
251 KOG2404 Fumarate reductase, fl 98.3 6.1E-06 1.3E-10 75.9 10.0 139 2-162 8-206 (477)
252 PRK12837 3-ketosteroid-delta-1 98.3 1.9E-05 4E-10 80.8 14.8 37 3-40 7-43 (513)
253 PRK08010 pyridine nucleotide-d 98.3 1.4E-05 3.1E-10 80.2 13.7 100 3-168 158-257 (441)
254 PRK14727 putative mercuric red 98.3 1.3E-05 2.7E-10 81.3 13.4 98 4-168 189-286 (479)
255 COG1231 Monoamine oxidase [Ami 98.3 1.4E-05 2.9E-10 77.5 12.6 41 1-41 5-45 (450)
256 PRK09564 coenzyme A disulfide 98.2 1.1E-05 2.3E-10 81.1 12.5 96 4-161 150-245 (444)
257 TIGR03385 CoA_CoA_reduc CoA-di 98.2 1.1E-05 2.3E-10 80.8 12.3 95 4-161 138-232 (427)
258 PRK13512 coenzyme A disulfide 98.2 7.1E-06 1.5E-10 82.2 11.0 92 4-161 149-240 (438)
259 PTZ00367 squalene epoxidase; P 98.2 1.1E-05 2.4E-10 82.8 12.5 35 2-36 32-66 (567)
260 COG0665 DadA Glycine/D-amino a 98.2 1.2E-05 2.7E-10 79.0 12.5 37 1-37 2-38 (387)
261 PRK12839 hypothetical protein; 98.2 2.9E-05 6.3E-10 80.2 15.5 39 3-41 8-46 (572)
262 PRK12845 3-ketosteroid-delta-1 98.2 2.7E-05 5.9E-10 80.2 15.2 39 3-42 16-54 (564)
263 PRK14694 putative mercuric red 98.2 1.8E-05 3.9E-10 80.0 13.5 95 3-161 178-272 (468)
264 PRK12844 3-ketosteroid-delta-1 98.2 3.3E-05 7.2E-10 79.6 15.6 39 3-41 6-44 (557)
265 PRK09077 L-aspartate oxidase; 98.2 2.5E-05 5.3E-10 80.3 14.4 37 3-40 8-44 (536)
266 PRK07395 L-aspartate oxidase; 98.2 9.7E-06 2.1E-10 83.3 11.4 37 3-40 9-45 (553)
267 PRK07843 3-ketosteroid-delta-1 98.2 2.1E-05 4.5E-10 81.2 13.8 38 3-40 7-44 (557)
268 PRK12843 putative FAD-binding 98.2 3.6E-05 7.8E-10 79.8 15.4 40 3-42 16-55 (578)
269 TIGR03452 mycothione_red mycot 98.2 2E-05 4.4E-10 79.2 13.2 99 4-168 170-268 (452)
270 PRK05329 anaerobic glycerol-3- 98.2 6.3E-06 1.4E-10 81.4 9.2 34 3-36 2-35 (422)
271 KOG2614 Kynurenine 3-monooxyge 98.2 1.1E-05 2.5E-10 76.9 10.0 37 3-39 2-38 (420)
272 PRK13748 putative mercuric red 98.2 2.1E-05 4.6E-10 81.4 13.1 99 3-168 270-368 (561)
273 PTZ00058 glutathione reductase 98.2 3E-05 6.5E-10 79.6 13.9 103 3-168 237-339 (561)
274 TIGR01438 TGR thioredoxin and 98.2 3.2E-05 7E-10 78.3 14.0 102 4-168 181-282 (484)
275 TIGR01423 trypano_reduc trypan 98.2 2.7E-05 5.8E-10 78.9 13.3 102 3-168 187-291 (486)
276 PF04820 Trp_halogenase: Trypt 98.1 8.4E-06 1.8E-10 81.8 9.2 60 75-162 152-211 (454)
277 COG0445 GidA Flavin-dependent 98.1 5.1E-06 1.1E-10 81.8 7.1 133 1-161 2-157 (621)
278 PTZ00306 NADH-dependent fumara 98.1 4.8E-05 1E-09 84.9 15.7 39 3-41 409-447 (1167)
279 COG0446 HcaD Uncharacterized N 98.1 2.3E-05 5E-10 77.5 12.0 97 4-161 137-236 (415)
280 PRK06292 dihydrolipoamide dehy 98.1 3.3E-05 7.1E-10 78.0 13.2 103 3-168 169-271 (460)
281 PF13434 K_oxygenase: L-lysine 98.1 1.7E-05 3.8E-10 76.4 10.3 134 3-160 190-339 (341)
282 PTZ00318 NADH dehydrogenase-li 98.1 5.6E-05 1.2E-09 75.4 14.3 91 5-161 175-279 (424)
283 TIGR02374 nitri_red_nirB nitri 98.1 2.1E-05 4.6E-10 84.3 11.9 97 4-161 141-237 (785)
284 PTZ00052 thioredoxin reductase 98.1 3.9E-05 8.5E-10 78.1 13.3 99 4-168 183-281 (499)
285 PRK07512 L-aspartate oxidase; 98.1 2.6E-05 5.6E-10 79.7 11.7 33 3-37 9-41 (513)
286 PRK08255 salicylyl-CoA 5-hydro 98.1 6E-06 1.3E-10 88.2 7.3 100 4-105 1-123 (765)
287 TIGR01292 TRX_reduct thioredox 98.1 4.9E-05 1.1E-09 71.8 12.3 96 3-161 141-237 (300)
288 PRK10262 thioredoxin reductase 98.1 5.6E-05 1.2E-09 72.5 12.7 101 3-161 146-247 (321)
289 PRK14989 nitrite reductase sub 98.1 3.6E-05 7.9E-10 82.7 12.4 99 4-161 146-244 (847)
290 TIGR03140 AhpF alkyl hydropero 98.1 4.6E-05 1E-09 78.0 12.7 100 4-168 353-453 (515)
291 PTZ00153 lipoamide dehydrogena 98.1 6.2E-05 1.3E-09 78.5 13.7 108 4-169 313-431 (659)
292 PRK13800 putative oxidoreducta 98.1 6.8E-05 1.5E-09 81.7 14.6 35 3-37 13-47 (897)
293 COG2907 Predicted NAD/FAD-bind 98.0 1.1E-05 2.4E-10 75.1 7.1 38 3-41 8-45 (447)
294 PRK11883 protoporphyrinogen ox 98.0 5.5E-06 1.2E-10 83.3 5.5 41 4-44 1-43 (451)
295 KOG1298 Squalene monooxygenase 98.0 6.6E-05 1.4E-09 70.9 12.0 34 3-36 45-78 (509)
296 TIGR02061 aprA adenosine phosp 98.0 6E-05 1.3E-09 78.1 13.1 32 5-36 1-36 (614)
297 PLN02568 polyamine oxidase 98.0 7.4E-06 1.6E-10 83.8 6.2 44 1-44 3-51 (539)
298 COG1053 SdhA Succinate dehydro 98.0 4.3E-05 9.2E-10 78.2 11.5 38 2-39 5-42 (562)
299 PLN02268 probable polyamine ox 98.0 8E-06 1.7E-10 81.8 6.0 41 4-44 1-41 (435)
300 PLN02546 glutathione reductase 98.0 7.6E-05 1.7E-09 76.7 13.1 102 3-168 252-353 (558)
301 TIGR00562 proto_IX_ox protopor 98.0 8.9E-06 1.9E-10 82.1 6.1 42 3-44 2-47 (462)
302 COG1232 HemY Protoporphyrinoge 98.0 1.7E-05 3.7E-10 78.2 7.2 41 4-44 1-43 (444)
303 KOG0685 Flavin-containing amin 98.0 1.2E-05 2.6E-10 78.0 5.7 42 3-44 21-63 (498)
304 TIGR02733 desat_CrtD C-3',4' d 97.9 1.2E-05 2.7E-10 81.8 6.2 50 4-53 2-52 (492)
305 PRK07233 hypothetical protein; 97.9 1E-05 2.2E-10 80.9 5.3 40 5-44 1-40 (434)
306 TIGR02485 CobZ_N-term precorri 97.9 0.00011 2.3E-09 73.7 12.6 30 8-37 1-30 (432)
307 PRK15317 alkyl hydroperoxide r 97.9 0.00011 2.4E-09 75.2 12.7 97 3-161 351-448 (517)
308 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 5.8E-05 1.3E-09 74.3 10.0 37 4-40 1-37 (433)
309 PLN02676 polyamine oxidase 97.9 1.8E-05 3.8E-10 80.3 6.2 47 3-49 26-74 (487)
310 PLN02576 protoporphyrinogen ox 97.9 1.9E-05 4.1E-10 80.5 6.4 42 3-44 12-54 (496)
311 PF13454 NAD_binding_9: FAD-NA 97.9 0.00017 3.6E-09 61.5 10.7 34 207-240 1-36 (156)
312 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.8E-05 3.9E-10 77.0 5.3 41 4-44 2-42 (377)
313 TIGR02730 carot_isom carotene 97.8 2.1E-05 4.5E-10 80.2 5.8 48 4-51 1-49 (493)
314 COG3349 Uncharacterized conser 97.8 1.8E-05 3.8E-10 78.0 4.9 41 4-44 1-41 (485)
315 PRK12416 protoporphyrinogen ox 97.8 1.8E-05 3.8E-10 80.0 5.0 41 4-44 2-48 (463)
316 TIGR02734 crtI_fam phytoene de 97.8 2E-05 4.4E-10 80.5 5.5 39 6-44 1-39 (502)
317 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00026 5.6E-09 69.1 13.1 91 4-161 146-242 (364)
318 PTZ00363 rab-GDP dissociation 97.8 2.1E-05 4.5E-10 78.3 4.8 44 1-44 2-45 (443)
319 COG0562 Glf UDP-galactopyranos 97.8 6.7E-05 1.4E-09 69.3 7.1 76 3-89 1-77 (374)
320 KOG2844 Dimethylglycine dehydr 97.8 0.00012 2.5E-09 73.8 9.0 60 74-162 184-243 (856)
321 COG0029 NadB Aspartate oxidase 97.7 0.00022 4.8E-09 69.8 10.6 32 5-37 9-40 (518)
322 KOG1336 Monodehydroascorbate/f 97.7 0.00031 6.8E-09 68.4 11.2 106 4-171 214-319 (478)
323 PRK12770 putative glutamate sy 97.7 0.00039 8.6E-09 67.6 11.8 33 4-36 173-206 (352)
324 TIGR02731 phytoene_desat phyto 97.7 4.4E-05 9.4E-10 77.0 5.2 40 5-44 1-40 (453)
325 PLN02529 lysine-specific histo 97.7 4.6E-05 9.9E-10 80.1 5.5 43 2-44 159-201 (738)
326 TIGR01316 gltA glutamate synth 97.7 0.0019 4.2E-08 64.9 16.7 33 4-36 273-305 (449)
327 PRK11749 dihydropyrimidine deh 97.7 0.0015 3.3E-08 65.9 15.8 33 4-36 274-307 (457)
328 KOG2665 Predicted FAD-dependen 97.6 0.00031 6.8E-09 64.7 8.7 38 2-39 47-86 (453)
329 COG3573 Predicted oxidoreducta 97.6 0.0015 3.2E-08 60.8 13.1 41 1-41 3-45 (552)
330 KOG0042 Glycerol-3-phosphate d 97.6 5.6E-05 1.2E-09 74.3 3.8 38 3-40 67-104 (680)
331 PRK12831 putative oxidoreducta 97.6 0.0023 5E-08 64.6 15.7 33 4-36 282-314 (464)
332 TIGR03143 AhpF_homolog putativ 97.5 0.00078 1.7E-08 69.6 12.0 34 3-36 143-176 (555)
333 KOG2852 Possible oxidoreductas 97.5 0.00066 1.4E-08 61.9 9.7 37 3-39 10-52 (380)
334 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00013 2.8E-09 71.5 5.3 36 3-38 2-37 (436)
335 PLN02328 lysine-specific histo 97.5 0.00012 2.6E-09 77.4 5.5 42 3-44 238-279 (808)
336 TIGR02732 zeta_caro_desat caro 97.5 0.00012 2.6E-09 74.1 5.3 40 5-44 1-40 (474)
337 COG2081 Predicted flavoprotein 97.5 0.00038 8.2E-09 66.6 8.2 157 203-378 3-169 (408)
338 KOG2495 NADH-dehydrogenase (ub 97.5 0.00018 3.9E-09 69.0 5.9 103 4-169 219-335 (491)
339 COG3486 IucD Lysine/ornithine 97.5 0.0018 3.8E-08 62.1 12.3 134 4-161 188-339 (436)
340 KOG2311 NAD/FAD-utilizing prot 97.5 0.00036 7.9E-09 67.7 7.6 34 3-36 28-61 (679)
341 PF01134 GIDA: Glucose inhibit 97.5 0.00016 3.4E-09 70.1 5.3 45 329-374 100-150 (392)
342 PLN02487 zeta-carotene desatur 97.5 0.00015 3.3E-09 74.5 5.4 42 3-44 75-116 (569)
343 PRK12778 putative bifunctional 97.4 0.0047 1E-07 66.3 16.6 33 4-36 571-604 (752)
344 COG2509 Uncharacterized FAD-de 97.4 0.0027 5.9E-08 61.7 12.4 58 77-162 173-230 (486)
345 PRK06847 hypothetical protein; 97.4 0.001 2.3E-08 65.1 9.9 35 203-240 4-38 (375)
346 PRK01438 murD UDP-N-acetylmura 97.3 0.00034 7.4E-09 71.0 6.4 34 3-36 16-49 (480)
347 PLN02612 phytoene desaturase 97.3 0.00026 5.6E-09 73.2 5.4 41 3-43 93-133 (567)
348 PLN03000 amine oxidase 97.3 0.00028 6E-09 74.9 5.5 42 3-44 184-225 (881)
349 PRK12834 putative FAD-binding 97.3 0.00026 5.6E-09 73.1 5.2 38 3-40 4-43 (549)
350 KOG2853 Possible oxidoreductas 97.3 0.0036 7.9E-08 58.5 11.3 35 3-37 86-124 (509)
351 PF00732 GMC_oxred_N: GMC oxid 97.2 0.00028 6.1E-09 66.7 4.2 33 4-36 1-34 (296)
352 PF03486 HI0933_like: HI0933-l 97.2 0.00025 5.5E-09 69.9 3.8 51 326-377 111-167 (409)
353 PLN02976 amine oxidase 97.2 0.0004 8.7E-09 76.5 5.4 42 3-44 693-734 (1713)
354 PF06100 Strep_67kDa_ant: Stre 97.2 0.0041 8.8E-08 61.6 11.8 40 3-42 2-45 (500)
355 TIGR02462 pyranose_ox pyranose 97.2 0.00044 9.6E-09 70.4 5.0 39 4-42 1-39 (544)
356 TIGR01789 lycopene_cycl lycope 97.2 0.00088 1.9E-08 65.5 6.8 32 345-377 108-139 (370)
357 PRK12814 putative NADPH-depend 97.2 0.016 3.4E-07 61.2 16.6 33 4-36 324-357 (652)
358 PLN02463 lycopene beta cyclase 97.2 0.0016 3.4E-08 65.3 8.6 48 329-377 119-170 (447)
359 PRK12769 putative oxidoreducta 97.1 0.0058 1.3E-07 64.5 12.7 33 4-36 469-502 (654)
360 PRK12779 putative bifunctional 97.1 0.0053 1.1E-07 67.1 12.6 33 4-36 448-480 (944)
361 PRK12810 gltD glutamate syntha 97.1 0.012 2.7E-07 59.5 14.5 32 4-35 282-314 (471)
362 TIGR01318 gltD_gamma_fam gluta 97.1 0.018 3.9E-07 58.2 15.7 33 4-36 283-316 (467)
363 KOG3923 D-aspartate oxidase [A 97.0 0.00097 2.1E-08 61.1 5.3 36 1-36 1-43 (342)
364 PRK09897 hypothetical protein; 97.0 0.0063 1.4E-07 62.2 11.8 36 204-240 2-37 (534)
365 PF05834 Lycopene_cycl: Lycope 97.0 0.0018 3.9E-08 63.5 7.2 48 329-377 92-143 (374)
366 KOG1276 Protoporphyrinogen oxi 97.0 0.0009 1.9E-08 64.3 4.7 42 3-44 11-54 (491)
367 PLN02852 ferredoxin-NADP+ redu 97.0 0.00089 1.9E-08 67.5 4.7 37 201-240 24-62 (491)
368 COG4529 Uncharacterized protei 96.9 0.0098 2.1E-07 58.5 11.6 37 204-240 2-38 (474)
369 KOG2960 Protein involved in th 96.9 0.00062 1.4E-08 59.2 2.7 55 4-58 77-136 (328)
370 COG3075 GlpB Anaerobic glycero 96.9 0.0012 2.7E-08 61.3 4.6 34 3-36 2-35 (421)
371 PRK05868 hypothetical protein; 96.9 0.003 6.5E-08 61.9 7.5 34 204-240 2-35 (372)
372 TIGR01372 soxA sarcosine oxida 96.9 0.008 1.7E-07 66.4 11.5 92 4-161 318-410 (985)
373 PRK09853 putative selenate red 96.8 0.0021 4.5E-08 69.7 6.5 37 201-240 537-573 (1019)
374 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0047 1E-07 57.6 7.7 38 1-38 1-38 (439)
375 PRK02106 choline dehydrogenase 96.8 0.0014 3E-08 67.9 4.7 34 3-36 5-39 (560)
376 KOG3855 Monooxygenase involved 96.8 0.012 2.5E-07 56.6 10.2 33 3-35 36-72 (481)
377 PLN02172 flavin-containing mon 96.8 0.0048 1E-07 62.1 8.1 34 3-36 204-237 (461)
378 PRK12771 putative glutamate sy 96.7 0.048 1E-06 56.6 15.5 34 3-36 267-301 (564)
379 PRK07236 hypothetical protein; 96.6 0.0086 1.9E-07 59.0 9.0 36 202-240 5-40 (386)
380 PRK08163 salicylate hydroxylas 96.6 0.012 2.6E-07 58.1 9.8 35 203-240 4-38 (396)
381 PF13738 Pyr_redox_3: Pyridine 96.6 0.0038 8.3E-08 55.3 5.7 31 207-239 1-31 (203)
382 TIGR01790 carotene-cycl lycope 96.6 0.007 1.5E-07 59.6 7.9 33 205-240 1-33 (388)
383 PRK05192 tRNA uridine 5-carbox 96.6 0.011 2.5E-07 60.7 9.4 33 204-239 5-37 (618)
384 PF07992 Pyr_redox_2: Pyridine 96.6 0.0023 5.1E-08 56.5 4.1 32 205-239 1-32 (201)
385 PRK06834 hypothetical protein; 96.6 0.0096 2.1E-07 60.6 9.0 34 204-240 4-37 (488)
386 COG0445 GidA Flavin-dependent 96.5 0.0071 1.5E-07 60.2 7.4 34 204-240 5-38 (621)
387 COG0492 TrxB Thioredoxin reduc 96.5 0.027 5.8E-07 53.4 10.9 97 3-167 143-240 (305)
388 PRK12809 putative oxidoreducta 96.5 0.12 2.6E-06 54.5 16.6 34 3-36 451-485 (639)
389 TIGR01317 GOGAT_sm_gam glutama 96.5 0.22 4.7E-06 50.7 17.9 33 4-36 284-317 (485)
390 PRK07588 hypothetical protein; 96.5 0.013 2.8E-07 57.8 8.8 33 205-240 2-34 (391)
391 PRK12775 putative trifunctiona 96.4 0.028 6E-07 62.1 12.1 33 4-36 572-605 (1006)
392 PRK06753 hypothetical protein; 96.4 0.011 2.4E-07 57.8 7.8 33 205-240 2-34 (373)
393 PLN02697 lycopene epsilon cycl 96.4 0.005 1.1E-07 62.8 5.3 34 203-239 108-141 (529)
394 PRK08401 L-aspartate oxidase; 96.3 0.038 8.2E-07 55.9 11.4 33 204-239 2-34 (466)
395 KOG1346 Programmed cell death 96.3 0.012 2.5E-07 56.6 6.9 98 2-161 346-448 (659)
396 PF04820 Trp_halogenase: Trypt 96.3 0.0063 1.4E-07 61.2 5.6 50 327-377 157-212 (454)
397 TIGR03378 glycerol3P_GlpB glyc 96.3 0.005 1.1E-07 60.5 4.7 33 4-36 1-33 (419)
398 TIGR03315 Se_ygfK putative sel 96.2 0.056 1.2E-06 59.1 12.8 33 4-36 667-701 (1012)
399 KOG4716 Thioredoxin reductase 96.2 0.0093 2E-07 55.8 5.8 100 5-161 200-299 (503)
400 PRK05714 2-octaprenyl-3-methyl 96.2 0.034 7.3E-07 55.1 10.3 49 328-377 116-169 (405)
401 TIGR01810 betA choline dehydro 96.2 0.0045 9.7E-08 63.7 3.9 32 5-36 1-33 (532)
402 COG2303 BetA Choline dehydroge 96.1 0.005 1.1E-07 63.3 4.1 34 3-36 7-40 (542)
403 KOG0405 Pyridine nucleotide-di 96.1 0.026 5.7E-07 53.1 8.2 104 3-170 189-292 (478)
404 PRK07333 2-octaprenyl-6-methox 96.1 0.022 4.8E-07 56.3 8.4 51 326-377 113-168 (403)
405 PRK06184 hypothetical protein; 96.1 0.026 5.7E-07 57.7 9.0 35 203-240 3-37 (502)
406 PRK09126 hypothetical protein; 96.1 0.029 6.3E-07 55.2 9.1 34 204-240 4-37 (392)
407 TIGR01984 UbiH 2-polyprenyl-6- 96.0 0.021 4.5E-07 56.1 7.8 50 327-377 108-163 (382)
408 COG0654 UbiH 2-polyprenyl-6-me 96.0 0.014 3E-07 57.5 6.4 51 326-377 106-163 (387)
409 PTZ00188 adrenodoxin reductase 96.0 0.0084 1.8E-07 60.0 4.7 37 201-240 37-74 (506)
410 PRK08849 2-octaprenyl-3-methyl 96.0 0.035 7.5E-07 54.7 9.0 33 204-239 4-36 (384)
411 PLN02785 Protein HOTHEAD 96.0 0.008 1.7E-07 62.4 4.6 34 3-37 55-88 (587)
412 KOG2755 Oxidoreductase [Genera 96.0 0.029 6.4E-07 50.7 7.5 34 205-239 1-34 (334)
413 PRK08773 2-octaprenyl-3-methyl 95.9 0.031 6.8E-07 55.1 8.6 50 327-377 116-170 (392)
414 COG3634 AhpF Alkyl hydroperoxi 95.9 0.065 1.4E-06 50.5 9.9 105 2-171 353-458 (520)
415 PRK07494 2-octaprenyl-6-methox 95.9 0.041 8.8E-07 54.1 9.2 35 203-240 7-41 (388)
416 TIGR01988 Ubi-OHases Ubiquinon 95.9 0.023 4.9E-07 55.7 7.3 33 205-240 1-33 (385)
417 TIGR00136 gidA glucose-inhibit 95.8 0.044 9.6E-07 56.4 9.3 32 205-239 2-33 (617)
418 PRK08244 hypothetical protein; 95.8 0.031 6.8E-07 56.9 8.2 34 204-240 3-36 (493)
419 TIGR02032 GG-red-SF geranylger 95.8 0.022 4.7E-07 53.4 6.5 33 205-240 2-34 (295)
420 PRK13984 putative oxidoreducta 95.8 0.097 2.1E-06 54.8 11.9 30 4-33 419-454 (604)
421 TIGR00275 flavoprotein, HI0933 95.8 0.019 4.2E-07 56.8 6.3 31 207-240 1-31 (400)
422 KOG4254 Phytoene desaturase [C 95.8 0.009 2E-07 58.0 3.7 41 3-43 14-54 (561)
423 PRK05329 anaerobic glycerol-3- 95.8 0.07 1.5E-06 53.0 10.1 94 7-161 219-317 (422)
424 COG2072 TrkA Predicted flavopr 95.7 0.037 8E-07 55.5 7.9 36 202-239 7-42 (443)
425 PF01494 FAD_binding_3: FAD bi 95.6 0.012 2.7E-07 56.6 4.3 33 205-240 3-35 (356)
426 PRK08020 ubiF 2-octaprenyl-3-m 95.6 0.021 4.5E-07 56.3 5.9 34 203-239 5-38 (391)
427 TIGR03219 salicylate_mono sali 95.6 0.056 1.2E-06 53.7 9.0 34 205-240 2-35 (414)
428 PRK11445 putative oxidoreducta 95.6 0.12 2.5E-06 50.3 10.9 32 205-240 3-34 (351)
429 TIGR01470 cysG_Nterm siroheme 95.6 0.025 5.5E-07 50.3 5.7 35 201-238 7-41 (205)
430 PRK05732 2-octaprenyl-6-methox 95.6 0.05 1.1E-06 53.5 8.4 32 204-238 4-38 (395)
431 PRK06567 putative bifunctional 95.6 0.027 5.9E-07 60.7 6.7 36 201-239 381-416 (1028)
432 PRK07045 putative monooxygenas 95.5 0.036 7.9E-07 54.5 7.3 34 204-240 6-39 (388)
433 PRK01438 murD UDP-N-acetylmura 95.5 0.018 3.9E-07 58.5 4.9 36 201-239 14-49 (480)
434 PRK10157 putative oxidoreducta 95.5 0.068 1.5E-06 53.4 9.0 33 204-239 6-38 (428)
435 KOG2311 NAD/FAD-utilizing prot 95.4 0.13 2.7E-06 50.7 10.0 34 203-239 28-61 (679)
436 PLN00093 geranylgeranyl diphos 95.4 0.064 1.4E-06 53.9 8.4 36 202-240 38-73 (450)
437 PRK07608 ubiquinone biosynthes 95.4 0.071 1.5E-06 52.4 8.6 34 204-240 6-39 (388)
438 KOG3851 Sulfide:quinone oxidor 95.3 0.021 4.5E-07 53.1 4.2 38 201-239 37-74 (446)
439 COG3380 Predicted NAD/FAD-depe 95.3 0.068 1.5E-06 48.8 7.4 32 205-239 3-34 (331)
440 PRK08850 2-octaprenyl-6-methox 95.3 0.1 2.2E-06 51.7 9.5 49 328-377 115-169 (405)
441 PRK07364 2-octaprenyl-6-methox 95.2 0.027 5.8E-07 56.0 5.1 35 203-240 18-52 (415)
442 KOG0404 Thioredoxin reductase 95.2 0.12 2.6E-06 45.8 8.3 97 3-161 157-254 (322)
443 PF03721 UDPG_MGDP_dh_N: UDP-g 95.2 0.02 4.4E-07 50.1 3.6 33 4-36 1-33 (185)
444 PRK08013 oxidoreductase; Provi 95.2 0.11 2.4E-06 51.4 9.3 34 204-240 4-37 (400)
445 PRK06183 mhpA 3-(3-hydroxyphen 95.2 0.046 1E-06 56.4 6.8 35 203-240 10-44 (538)
446 PF00743 FMO-like: Flavin-bind 95.1 0.066 1.4E-06 54.9 7.7 34 3-36 183-216 (531)
447 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.024 5.1E-07 48.3 3.8 32 5-36 1-32 (157)
448 PRK06475 salicylate hydroxylas 95.1 0.12 2.6E-06 51.1 9.4 34 204-240 3-36 (400)
449 COG1251 NirB NAD(P)H-nitrite r 95.1 0.053 1.1E-06 56.1 6.7 100 4-167 146-245 (793)
450 PRK07190 hypothetical protein; 95.1 0.066 1.4E-06 54.4 7.6 34 204-240 6-39 (487)
451 TIGR01813 flavo_cyto_c flavocy 95.1 0.19 4.2E-06 50.3 10.8 33 205-240 1-34 (439)
452 TIGR03364 HpnW_proposed FAD de 95.0 0.062 1.3E-06 52.4 6.9 46 330-377 151-198 (365)
453 TIGR02023 BchP-ChlP geranylger 95.0 0.076 1.7E-06 52.3 7.6 31 205-238 2-32 (388)
454 PF00996 GDI: GDP dissociation 95.0 0.035 7.7E-07 55.0 5.1 43 2-44 3-45 (438)
455 TIGR02028 ChlP geranylgeranyl 94.9 0.07 1.5E-06 52.8 7.0 32 205-239 2-33 (398)
456 PRK08293 3-hydroxybutyryl-CoA 94.9 0.038 8.2E-07 52.1 4.9 36 1-36 1-36 (287)
457 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.03 6.6E-07 55.6 4.4 37 1-37 1-37 (415)
458 PF13241 NAD_binding_7: Putati 94.8 0.028 6.1E-07 44.1 3.3 34 2-35 6-39 (103)
459 PRK07530 3-hydroxybutyryl-CoA 94.8 0.043 9.4E-07 51.8 4.9 36 1-36 2-37 (292)
460 PRK11728 hydroxyglutarate oxid 94.8 0.15 3.3E-06 50.2 9.0 33 204-239 3-37 (393)
461 PRK06481 fumarate reductase fl 94.7 0.31 6.8E-06 49.8 11.3 35 203-240 61-95 (506)
462 TIGR03862 flavo_PP4765 unchara 94.7 0.13 2.9E-06 50.1 8.1 66 71-167 77-145 (376)
463 PRK05562 precorrin-2 dehydroge 94.7 0.082 1.8E-06 47.5 6.2 35 201-238 23-57 (223)
464 PRK05808 3-hydroxybutyryl-CoA 94.6 0.049 1.1E-06 51.1 5.0 36 1-36 1-36 (282)
465 PRK06719 precorrin-2 dehydroge 94.6 0.055 1.2E-06 46.0 4.7 33 2-34 12-44 (157)
466 COG0569 TrkA K+ transport syst 94.6 0.044 9.5E-07 49.6 4.3 33 4-36 1-33 (225)
467 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.047 1E-06 47.6 4.4 32 5-36 1-32 (180)
468 PRK06035 3-hydroxyacyl-CoA deh 94.6 0.051 1.1E-06 51.3 4.9 36 1-36 1-36 (291)
469 PRK06126 hypothetical protein; 94.5 0.18 3.9E-06 52.1 9.2 35 203-240 7-41 (545)
470 KOG1238 Glucose dehydrogenase/ 94.5 0.039 8.5E-07 56.3 4.0 36 3-38 57-93 (623)
471 KOG1399 Flavin-containing mono 94.5 0.058 1.3E-06 53.8 5.2 35 202-239 5-39 (448)
472 TIGR01470 cysG_Nterm siroheme 94.4 0.061 1.3E-06 47.9 4.8 34 2-35 8-41 (205)
473 PRK14106 murD UDP-N-acetylmura 94.4 0.053 1.2E-06 54.5 4.9 36 1-36 3-38 (450)
474 PRK08132 FAD-dependent oxidore 94.4 0.17 3.7E-06 52.3 8.7 36 202-240 22-57 (547)
475 PF12831 FAD_oxidored: FAD dep 94.4 0.052 1.1E-06 54.3 4.8 33 205-240 1-33 (428)
476 PRK07538 hypothetical protein; 94.4 0.2 4.3E-06 49.8 8.9 33 205-240 2-34 (413)
477 PRK06249 2-dehydropantoate 2-r 94.3 0.067 1.4E-06 51.1 5.1 36 1-36 3-38 (313)
478 PRK06617 2-octaprenyl-6-methox 94.3 0.047 1E-06 53.5 4.2 32 205-239 3-34 (374)
479 TIGR01989 COQ6 Ubiquinone bios 94.2 0.19 4.2E-06 50.3 8.5 50 328-378 121-185 (437)
480 PRK06718 precorrin-2 dehydroge 94.2 0.14 3E-06 45.5 6.6 34 201-237 8-41 (202)
481 KOG0399 Glutamate synthase [Am 94.2 0.074 1.6E-06 57.3 5.4 38 200-240 1782-1819(2142)
482 PRK07066 3-hydroxybutyryl-CoA 94.1 0.068 1.5E-06 51.0 4.6 35 2-36 6-40 (321)
483 PRK04176 ribulose-1,5-biphosph 94.1 0.23 5.1E-06 45.9 8.0 37 201-240 23-59 (257)
484 PRK06718 precorrin-2 dehydroge 94.0 0.086 1.9E-06 46.8 4.8 34 2-35 9-42 (202)
485 KOG1800 Ferredoxin/adrenodoxin 94.0 0.13 2.8E-06 49.2 6.1 36 203-239 20-55 (468)
486 PF00890 FAD_binding_2: FAD bi 94.0 0.23 5E-06 49.3 8.4 32 206-240 2-33 (417)
487 TIGR02360 pbenz_hydroxyl 4-hyd 93.9 0.12 2.5E-06 51.1 6.1 34 204-240 3-36 (390)
488 PRK06996 hypothetical protein; 93.9 0.14 3.1E-06 50.5 6.8 37 203-239 11-48 (398)
489 PLN02927 antheraxanthin epoxid 93.8 0.38 8.2E-06 50.5 9.7 36 201-239 79-114 (668)
490 PRK07819 3-hydroxybutyryl-CoA 93.7 0.081 1.8E-06 49.8 4.4 34 3-36 5-38 (286)
491 PF01488 Shikimate_DH: Shikima 93.7 0.14 2.9E-06 42.4 5.2 35 2-36 11-46 (135)
492 TIGR00551 nadB L-aspartate oxi 93.6 0.47 1E-05 48.3 10.1 31 205-239 4-34 (488)
493 PRK06129 3-hydroxyacyl-CoA deh 93.5 0.098 2.1E-06 49.8 4.6 33 4-36 3-35 (308)
494 COG0644 FixC Dehydrogenases (f 93.4 0.22 4.7E-06 49.2 7.1 34 204-240 4-37 (396)
495 PF02558 ApbA: Ketopantoate re 93.4 0.12 2.6E-06 43.4 4.5 30 6-35 1-30 (151)
496 PRK08243 4-hydroxybenzoate 3-m 93.4 0.17 3.6E-06 49.9 6.3 34 204-240 3-36 (392)
497 PRK07804 L-aspartate oxidase; 93.4 0.45 9.8E-06 49.1 9.6 34 204-240 17-50 (541)
498 PF00899 ThiF: ThiF family; I 93.4 0.097 2.1E-06 43.2 3.8 33 3-35 2-35 (135)
499 PRK02705 murD UDP-N-acetylmura 93.4 0.093 2E-06 53.0 4.4 34 5-38 2-35 (459)
500 COG1004 Ugd Predicted UDP-gluc 93.3 0.099 2.1E-06 50.4 4.2 33 4-36 1-33 (414)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.5e-49 Score=399.65 Aligned_cols=352 Identities=35% Similarity=0.643 Sum_probs=212.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc----------cCCcceecCCccccccCCCCCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK----------TVETTMLQTPKQLYQFSDYPWPDSVTTD 72 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (418)
+++|+|||||++||++|++|.+.|+++++||+++.+||.|+. .|+++.+++++..|.|+++|++.+ .+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~-~p~ 79 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPED-YPD 79 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCC-CSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCC-CCC
Confidence 478999999999999999999999999999999999999985 478899999999999999999976 578
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
|+++.++.+||+.+++++++.+.++|+++|+++++.+ |.. ..+.|.|++.+. +..++-.+|
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~--d~~---------------~~~~W~V~~~~~--g~~~~~~fD 140 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDP--DFS---------------ATGKWEVTTEND--GKEETEEFD 140 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEET--TTT----------------ETEEEEEETTT--TEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecc--ccC---------------CCceEEEEeecC--CeEEEEEeC
Confidence 9999999999999999999999999999999999875 111 135799987643 566678899
Q ss_pred EEEEeeccCCCCCCCCC--CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 014821 153 FVILCVGRFSDVPNIPE--FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~ 230 (418)
+||+|||.+ ..|++|. ++ |++.|.|.++|+.+|.+ ++..++|+|+|||+|.||+|+|.+|+..+.
T Consensus 141 ~VvvatG~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~--- 207 (531)
T PF00743_consen 141 AVVVATGHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVAK--- 207 (531)
T ss_dssp EEEEEE-SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTSC---
T ss_pred eEEEcCCCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhcC---
Confidence 999999999 7999996 88 99999999999999988 456899999999999999999999988654
Q ss_pred CeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 014821 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (418)
Q Consensus 231 ~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (418)
+|++.+|++.|+.|+....|.|.|..+..|+..++..... .+.....+.+.+.........++.|
T Consensus 208 ~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp---------------~~~~~~~~~~~l~~~~~~~~~gl~p 272 (531)
T PF00743_consen 208 KVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLP---------------ESLSNWLLEKKLNKRFDHENYGLKP 272 (531)
T ss_dssp CEEEECC-------------------------------------------------------------------------
T ss_pred CeEEEEeccccccccccccccccccccccccccccccccc---------------ccccccccccccccccccccccccc
Confidence 5999999999999998878889988776776544322111 0111222233333344445566766
Q ss_pred CcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
.... .+..+.+++++...+..|+|+++ ..|.++++++|+++||+++.++|.||+||||+.+ .+||+
T Consensus 273 ~~~~-----~~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~--------fpFL~ 338 (531)
T PF00743_consen 273 KHRF-----FSQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFS--------FPFLD 338 (531)
T ss_dssp -------------------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE-----------TTB-
T ss_pred cccc-----ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc--------ccccc
Confidence 6554 35678889999999999999987 4599999999999999984579999999999987 56777
Q ss_pred hhhcCCCCCCccceeee-eecc--Ccccc
Q 014821 391 DYLAGSPTEKLPLYRSA-HIYI--DTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~ 416 (418)
+.++...++.+.+|+++ .|.+ |+|+|
T Consensus 339 ~~~~~~~~~~~~LYk~vfp~~~~~ptLaf 367 (531)
T PF00743_consen 339 ESLIKVDDNRVRLYKHVFPPNLDHPTLAF 367 (531)
T ss_dssp TTTT-S-SSSSSEETTTEETETTSTTEEE
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77776677888999999 6665 67765
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=2.9e-38 Score=314.17 Aligned_cols=202 Identities=28% Similarity=0.581 Sum_probs=176.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---------------------cCCcceecCCcccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------------------TVETTMLQTPKQLYQF 60 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---------------------~~~~~~l~~~~~~~~~ 60 (418)
..++|+|||||++||++|++|++.|++++|||+++.+||.|.. .|.++++++|...|.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999999999999965 2677788999999999
Q ss_pred CCCCCCCC------CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 61 SDYPWPDS------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 61 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
+++|++.. ....||++.++.+||+.+++++++.+.++++++|++|++.+ +.|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------~~w 146 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------GKW 146 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC----------------------CeE
Confidence 99998753 23678999999999999999999966699999999998765 679
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKS 214 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~s 214 (418)
.|++.+.. +...+..||+||+|||.+ ..|++|.++ |.+.|.+.++|+..|+. ....++|+|+|||+|.|
T Consensus 147 ~V~~~~~~-~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~------~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 147 RVQSKNSG-GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRV------PDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EEEEEcCC-CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCC------ccccCCCEEEEECCCcC
Confidence 99987542 233467899999999998 689999999 99999999999999987 34578999999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 215 ALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 215 a~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
|+|+|.+|...+.. |++++|++
T Consensus 216 g~diA~~L~~~a~~---V~l~~r~~ 237 (461)
T PLN02172 216 GADISRDIAKVAKE---VHIASRAS 237 (461)
T ss_pred HHHHHHHHHHhCCe---EEEEEeec
Confidence 99999999987654 99999976
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-36 Score=297.27 Aligned_cols=331 Identities=25% Similarity=0.415 Sum_probs=247.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccc-cCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|+++||+|||||++||++|++|.+.|.. ++|||+++.+||.|.. +|+++++++|+..++|++.|++ +...++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~--~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR--WDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC--CcccCCCccc
Confidence 3578999999999999999999999998 9999999999999998 9999999999999999999998 3577777778
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.+|+..++++|++...+.+++.|..++... ..+.|+|++.++.. .+ +.||+||+||
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~--------------------~~~~w~V~~~~~~~--~~-~~a~~vV~AT 140 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDE--------------------DTKRWTVTTSDGGT--GE-LTADFVVVAT 140 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecC--------------------CCCeEEEEEcCCCe--ee-EecCEEEEee
Confidence 9999999999999888899999998888776 24689999998742 22 7899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|.+ +.|.+|.|+ |.+.|.+.++|+++|.+ ..+.++|+|+|||+|+||+|+|.+|...+.. |||+.|+
T Consensus 141 G~~-~~P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~---vt~~qRs 207 (443)
T COG2072 141 GHL-SEPYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGAS---VTLSQRS 207 (443)
T ss_pred cCC-CCCCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCCe---eEEEecC
Confidence 998 899999999 99999999999999998 4578999999999999999999999998855 9999999
Q ss_pred CcccccCCCCCC-CcchhhhhhHHHHHhhcCCCchhHHHH------HHhhhhHHHHHHHHHHHHHHHhhhh--hcccCCC
Q 014821 239 EHWNIPDYFPWG-FPLAYLYLNRFAELLVHKPGEGFLLSL------LATMLSPLRWAISKFVEADIKKKHR--LAKFGMV 309 (418)
Q Consensus 239 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 309 (418)
+.++.|.....- .+....+...+.. ............ ..............+....+..... ....++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (443)
T COG2072 208 PPHILPKPLLGEEVGGRLALRRALPA--GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLG 285 (443)
T ss_pred CCceecccccccchHHHHHHhhhCcc--ceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcC
Confidence 999888654111 1111111111000 000000010100 0000111111222222222222111 1112233
Q ss_pred CCcccccccccccccccCcchhhhhccCcEEEeccCceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
|.+.. .+.+...+-.+++....++++++...+..+.+..+..+++.+ ++.|.++.+||+..+
T Consensus 286 p~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~e~d~i~~~tg~~~~ 347 (443)
T COG2072 286 PDYAP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGRE-EEADVIITATGLDAN 347 (443)
T ss_pred CCCCc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCcc-ccceEEEecCCCchh
Confidence 33222 333455666888999999999999988888888888888777 999999999999873
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-35 Score=287.21 Aligned_cols=202 Identities=38% Similarity=0.705 Sum_probs=182.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccccc----------CCcceecCCccccccCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT----------VETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
|..++|+|||||+|||++|++|.++|.++++|||.+.+||.|.+. |..+++++|+..|+|+++|++....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 347899999999999999999999999999999999999999996 8999999999999999999998767
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
..||+..++.+||+++++++++.+.++++++|..++... ++.|.|.+.+..+. .....
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------------~gkW~V~~~~~~~~-~~~~i 141 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------------KGKWRVTTKDNGTQ-IEEEI 141 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------------CCceeEEEecCCcc-eeEEE
Confidence 788999999999999999999998999999999998876 25899999887533 57899
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCC--CCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKG--PEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
||.|++|||.+ ..|++|.++ | .+.|.|.++|+.+|+. .+..++|+|+|||.|.||+|++.+++..+..
T Consensus 142 fd~VvVctGh~-~~P~~P~~~---g~~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~ 211 (448)
T KOG1399|consen 142 FDAVVVCTGHY-VEPRIPQIP---GPGIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE 211 (448)
T ss_pred eeEEEEcccCc-CCCCCCcCC---CCchhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhccC
Confidence 99999999998 679999998 6 6799999999999997 4568899999999999999999998887655
Q ss_pred CCCeEEEEe
Q 014821 229 ENPCTVLYR 237 (418)
Q Consensus 229 ~~~V~~~~r 237 (418)
|++..+
T Consensus 212 ---v~~~~~ 217 (448)
T KOG1399|consen 212 ---VHLSVV 217 (448)
T ss_pred ---cceeee
Confidence 888765
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=1.1e-28 Score=220.97 Aligned_cols=192 Identities=38% Similarity=0.664 Sum_probs=137.7
Q ss_pred EEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccccCCcceecCCcccc---ccCCCCCCC-------CCCCCCCC
Q 014821 7 AIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLY---QFSDYPWPD-------SVTTDFPD 75 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~---~~~~~~~~~-------~~~~~~~~ 75 (418)
+|||||++||++|.+|.++|++ ++|||+++.+||.|...++...+..|.... .+.++.... .....+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999998 999999999999999876666666655332 222211110 01356788
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
..++.+|++++++++++ .++++++|+++++++ +.|.|++.++ +++.||+||
T Consensus 81 ~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~~----------------------~~w~v~~~~~-----~~~~a~~VV 131 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGL--EIRFNTRVESVRRDG----------------------DGWTVTTRDG-----RTIRADRVV 131 (203)
T ss_dssp HHHHHHHHHHHHHHTTG--GEETS--EEEEEEET----------------------TTEEEEETTS------EEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCc--ccccCCEEEEEEEec----------------------cEEEEEEEec-----ceeeeeeEE
Confidence 99999999999999999 799999999999987 5699999887 689999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 156 lAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
+|||.. +.|.+|.++ + ..+. ..+|+..+.. ....++++|+|||+|.||+|+|..|.+.+. +|+++
T Consensus 132 lAtG~~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~---~V~~~ 196 (203)
T PF13738_consen 132 LATGHY-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK---SVTLV 196 (203)
T ss_dssp E---SS-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS---EEEEE
T ss_pred Eeeecc-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC---EEEEE
Confidence 999988 689999988 6 2222 6889988866 345778999999999999999999999874 59999
Q ss_pred EecCccc
Q 014821 236 YRTEHWN 242 (418)
Q Consensus 236 ~r~~~~~ 242 (418)
+|++.|+
T Consensus 197 ~R~~~~~ 203 (203)
T PF13738_consen 197 TRSPIWY 203 (203)
T ss_dssp ESS----
T ss_pred ecCCCCC
Confidence 9998764
No 6
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.95 E-value=5.1e-28 Score=231.66 Aligned_cols=232 Identities=22% Similarity=0.319 Sum_probs=145.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCCcceecCC-----------ccccccCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQTP-----------KQLYQFSDYPWPD 67 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~~~~l~~~-----------~~~~~~~~~~~~~ 67 (418)
+.+|+++||.||++|++|..|.+.+ .++.+||+.+.+ .|+. ..++..++++ ..-|+|..|....
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 3589999999999999999999976 899999997644 5776 5677777653 2333333222111
Q ss_pred CC-------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 68 SV-------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 68 ~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
+. ...+|++.++.+|++|+++++.. .+.++++|++|++....+ ...|.|.+.+
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~------------------~~~~~V~~~~ 138 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGD------------------EDLFRVTTRD 138 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETT------------------EEEEEEEEEE
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCC------------------ccEEEEEEee
Confidence 11 46778999999999999999985 699999999999977000 0359999976
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
.+|...++.|++||+|+| ..|.+|+.. ......+.++|+++|.... ....+.++|+|||||.||.|++.
T Consensus 139 -~~g~~~~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~~ 207 (341)
T PF13434_consen 139 -SDGDGETYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIFL 207 (341)
T ss_dssp -TTS-EEEEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHHH
T ss_pred -cCCCeeEEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHHH
Confidence 456678999999999999 568888743 2111135799999886532 23567899999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhh-hHHHHHhhcCCCc
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYL-NRFAELLVHKPGE 271 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 271 (418)
.|...+.. .+|++++|++.+..... .|..+.++ ....+.+...|.+
T Consensus 208 ~L~~~~~~-~~V~~i~R~~~~~~~d~----s~f~ne~f~P~~v~~f~~l~~~ 254 (341)
T PF13434_consen 208 DLLRRGPE-AKVTWISRSPGFFPMDD----SPFVNEIFSPEYVDYFYSLPDE 254 (341)
T ss_dssp HHHHH-TT-EEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HH
T ss_pred HHHhCCCC-cEEEEEECCCccCCCcc----ccchhhhcCchhhhhhhcCCHH
Confidence 99998764 57999999986554433 45544444 3566777777654
No 7
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.95 E-value=1.4e-26 Score=219.78 Aligned_cols=259 Identities=19% Similarity=0.285 Sum_probs=179.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
+||+|||||++|+++|..|++.|.+++|||+.+ .||.|.... ....++.+ ....+..++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~---------~~~~~~~~-------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT---------EVENYPGF-------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc---------cccccCCC-------CCCCChHHHHHHH
Confidence 689999999999999999999999999999975 777654310 00011111 1122346888999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++.++++++ .+++ ++|++++... +.|.|.+.++ .++.||+||+|||.
T Consensus 64 ~~~~~~~gv--~~~~-~~v~~v~~~~----------------------~~~~v~~~~~-----~~~~~d~liiAtG~--- 110 (300)
T TIGR01292 64 KEQAVKFGA--EIIY-EEVIKVDLSD----------------------RPFKVKTGDG-----KEYTAKAVIIATGA--- 110 (300)
T ss_pred HHHHHHcCC--eEEE-EEEEEEEecC----------------------CeeEEEeCCC-----CEEEeCEEEECCCC---
Confidence 999999998 7777 8999998765 5577776654 48999999999995
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.|..|.++ |.+.+.+..++...... ....++++|+|||+|.+|+|+|..|...+. +|++++|.+.+..
T Consensus 111 ~~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~---~V~~v~~~~~~~~ 178 (300)
T TIGR01292 111 SARKLGIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK---KVTLVHRRDKFRA 178 (300)
T ss_pred CcccCCCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC---EEEEEEeCcccCc
Confidence 46667777 76655444454433322 234568899999999999999999988764 4999999764210
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
.
T Consensus 179 ---~---------------------------------------------------------------------------- 179 (300)
T TIGR01292 179 ---E---------------------------------------------------------------------------- 179 (300)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCcchhhhhccC-cEEEeccC-ceeEecCc----EEEc---CC--ceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 324 ITVPEKFYDKVEEG-SIILKKSQ-DFSFCEDG----IVVD---GQ--TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 324 ~~~~~~~~~~~~~~-~v~~~~~~-v~~~~~~~----v~~~---~g--~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+.+.+.+++. +|+++.+. +.+++.+. +.+. +| .+ +++|.||+|||++++.++.+. .
T Consensus 180 ----~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~~~~~~l~~--------~ 246 (300)
T TIGR01292 180 ----KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE-LKVDGVFIAIGHEPNTELLKG--------L 246 (300)
T ss_pred ----HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE-EEccEEEEeeCCCCChHHHHH--------h
Confidence 0011223333 67777665 66665442 4442 23 34 899999999999999544433 2
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.-+.++.+.++..+.++.||||.
T Consensus 247 ~~~~~~g~i~v~~~~~t~~~~vya 270 (300)
T TIGR01292 247 LELDEGGYIVTDEGMRTSVPGVFA 270 (300)
T ss_pred heecCCCcEEECCCCccCCCCEEE
Confidence 111345678887777779999996
No 8
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-26 Score=213.77 Aligned_cols=261 Identities=21% Similarity=0.311 Sum_probs=190.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+.+||+||||||+||+||.++.+.+.+ ++|+|+ ..+||...... ....+|- ...-.+..++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~------------~venypg----~~~~~~g~~L 63 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT------------DVENYPG----FPGGILGPEL 63 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce------------eecCCCC----CccCCchHHH
Confidence 7789999999999999999999999998 666665 55664322200 0011110 1222345788
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+.+++.+..++. .+.. ..|..++... +.|.|.+.++ +++|++||+|||
T Consensus 64 ~~~~~~~a~~~~~--~~~~-~~v~~v~~~~----------------------~~F~v~t~~~------~~~ak~vIiAtG 112 (305)
T COG0492 64 MEQMKEQAEKFGV--EIVE-DEVEKVELEG----------------------GPFKVKTDKG------TYEAKAVIIATG 112 (305)
T ss_pred HHHHHHHHhhcCe--EEEE-EEEEEEeecC----------------------ceEEEEECCC------eEEEeEEEECcC
Confidence 8888888888887 5555 6777777654 2588888877 499999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+. ++.|.++ +..+|.+.-+|.+..|+ . .+++|+|+|||+|.+|+|-|..|...+.. |++++|++
T Consensus 113 ~~---~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~ 176 (305)
T COG0492 113 AG---ARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRD 176 (305)
T ss_pred Cc---ccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCc
Confidence 65 6666666 66688888888777665 3 68899999999999999999999998764 99999998
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
.+...
T Consensus 177 ~~ra~--------------------------------------------------------------------------- 181 (305)
T COG0492 177 EFRAE--------------------------------------------------------------------------- 181 (305)
T ss_pred ccCcC---------------------------------------------------------------------------
Confidence 63221
Q ss_pred cccccccCcchhhhhc-cCcEEEeccC-ceeEec---CcEEEcCC---ceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 320 SCLTITVPEKFYDKVE-EGSIILKKSQ-DFSFCE---DGIVVDGQ---TTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~---~~v~~~~g---~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.++ ..++.++.+. +.++.+ .+|.+.+. +..+.+|.|+.+.|+.|+.+ ++..
T Consensus 182 --------~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~--------~~~~ 245 (305)
T COG0492 182 --------EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTE--------LLKG 245 (305)
T ss_pred --------HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchH--------HHhh
Confidence 01112223 2378888875 788877 46777753 33389999999999999954 3333
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
....+.++.+.+...+.+++||+|.
T Consensus 246 ~~~~~~~g~I~v~~~~~TsvpGifA 270 (305)
T COG0492 246 LGVLDENGYIVVDEEMETSVPGIFA 270 (305)
T ss_pred ccccCCCCcEEcCCCcccCCCCEEE
Confidence 3333678888888889999999995
No 9
>PRK10262 thioredoxin reductase; Provisional
Probab=99.95 E-value=4.4e-26 Score=218.69 Aligned_cols=264 Identities=17% Similarity=0.298 Sum_probs=183.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+.+||+|||||++||++|..|+++|.++++||.. ..||.+..... +.++|. .....+..++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~------------~~~~~~----~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE------------VENWPG----DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce------------ECCCCC----CCCCCCHHHHHH
Confidence 4689999999999999999999999999999964 57775443210 111111 122334567888
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++.+.+..++. .+.+ .+|.+++... +.|+++... ..+.||+||+|||+.
T Consensus 68 ~~~~~~~~~~~--~~~~-~~v~~v~~~~----------------------~~~~v~~~~------~~~~~d~vilAtG~~ 116 (321)
T PRK10262 68 RMHEHATKFET--EIIF-DHINKVDLQN----------------------RPFRLTGDS------GEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHCCC--EEEe-eEEEEEEecC----------------------CeEEEEecC------CEEEECEEEECCCCC
Confidence 99999888876 5555 4677777655 557775432 268999999999954
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHW 241 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~ 241 (418)
|+.|+++ |.+.+.+..++.+.++. .....+++|+|||+|.+|+|+|..|...+.. |++++|++.+
T Consensus 117 ---~~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~---Vtlv~~~~~~ 181 (321)
T PRK10262 117 ---ARYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGF 181 (321)
T ss_pred ---CCCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEECCcc
Confidence 6777777 77666666677665544 2346789999999999999999999987654 9999997742
Q ss_pred cccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccc
Q 014821 242 NIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSC 321 (418)
Q Consensus 242 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (418)
... . .
T Consensus 182 -~~~-~------------~------------------------------------------------------------- 186 (321)
T PRK10262 182 -RAE-K------------I------------------------------------------------------------- 186 (321)
T ss_pred -CCC-H------------H-------------------------------------------------------------
Confidence 110 0 0
Q ss_pred cccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCC-----ceeeeccEEEEccCCCCCcchhccccchhhh
Q 014821 322 LTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQ-----TTPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (418)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g-----~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~ 390 (418)
+.+.+.+.+++.+|+++.+. +.+++++ +|++.++ .+.+++|.||+|+|++|+..+.+. .
T Consensus 187 ----~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~----- 256 (321)
T PRK10262 187 ----LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-Q----- 256 (321)
T ss_pred ----HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-c-----
Confidence 00112345677789988876 7778665 3555532 123999999999999999665432 1
Q ss_pred hhhcCCCCCCcccee-----eeeeccCcccc
Q 014821 391 DYLAGSPTEKLPLYR-----SAHIYIDTLTY 416 (418)
Q Consensus 391 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 416 (418)
+...++++.++. .+.++.||||.
T Consensus 257 ---l~~~~g~i~vd~~~~~~~~~t~~~~VyA 284 (321)
T PRK10262 257 ---LELENGYIKVQSGIHGNATQTSIPGVFA 284 (321)
T ss_pred ---ccccCCEEEECCCCcccccccCCCCEEE
Confidence 112235555554 45889999995
No 10
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.94 E-value=3.6e-26 Score=219.18 Aligned_cols=271 Identities=16% Similarity=0.138 Sum_probs=184.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|.+++|||||||++|+.++..|.++. .+++++|+++.. ...|+..+......+..+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------------------l~~plL~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------------------LFTPLLYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc----------------------ccchhhhhhhcCCCChhh
Confidence 67899999999999999999999975 899999998622 112222221222333345
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+.--++..+++.+- .-+...+|++|+.+. .+|++.+. ..+.||+||+|+
T Consensus 59 i~~p~~~~~~~~~~--v~~~~~~V~~ID~~~------------------------k~V~~~~~-----~~i~YD~LVval 107 (405)
T COG1252 59 IAIPLRALLRKSGN--VQFVQGEVTDIDRDA------------------------KKVTLADL-----GEISYDYLVVAL 107 (405)
T ss_pred eeccHHHHhcccCc--eEEEEEEEEEEcccC------------------------CEEEeCCC-----ccccccEEEEec
Confidence 55556666665441 234457899999877 56777774 589999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh------hhhhhh---cCCCEEEEEcCCCCHHHHHHHHhhhcCC-
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANL---VKGKRVTVVGLQKSALDIAMECTTANGL- 228 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~v~VvG~G~sa~e~a~~l~~~~~~- 228 (418)
|+. +..+.++ |..+|....-...+-..... +..... ....+|+|+|||.+|+|+|.+|.++...
T Consensus 108 Gs~---~~~fgi~---G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l 181 (405)
T COG1252 108 GSE---TNYFGIP---GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRL 181 (405)
T ss_pred CCc---CCcCCCC---CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHH
Confidence 954 6666666 65554211111000000000 000001 1234799999999999999999986431
Q ss_pred ---------CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014821 229 ---------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKK 299 (418)
Q Consensus 229 ---------~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (418)
.-+|+++.+.++ ++|.+. .+++.
T Consensus 182 ~~~~~~~~~~~~V~LVea~p~-ILp~~~-----------~~l~~------------------------------------ 213 (405)
T COG1252 182 LKKFRVDPSELRVILVEAGPR-ILPMFP-----------PKLSK------------------------------------ 213 (405)
T ss_pred hhhhcCCccccEEEEEccCch-hccCCC-----------HHHHH------------------------------------
Confidence 016888888875 666544 12211
Q ss_pred hhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCc
Q 014821 300 KHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
...+.+++.+|+++.+. |..+++++|++++|.+.+++|.+|||+|.+++
T Consensus 214 -----------------------------~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~- 263 (405)
T COG1252 214 -----------------------------YAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS- 263 (405)
T ss_pred -----------------------------HHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-
Confidence 12346678899999998 99999999999998833999999999999999
Q ss_pred chhccccchhhhh-hhcC-CCCCCccceeee-eeccCcccc
Q 014821 379 KLKNIFLSQTFQD-YLAG-SPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
+++.+ .... +..+++.++..+ +++.|+||.
T Consensus 264 --------~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa 296 (405)
T COG1252 264 --------PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFA 296 (405)
T ss_pred --------hhhhhcChhhhccCCCEEeCCCcccCCCCCeEE
Confidence 44444 1222 457999999999 999999995
No 11
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.94 E-value=6.6e-25 Score=223.18 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=185.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|.+|+++|++++||++. +||.|...+. +..++ ...+....++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~------------~~~~~-----~~~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG------------IENFI-----SVPETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc------------ccccC-----CCCCCCHHHHHHH
Confidence 479999999999999999999999999999873 8888754221 01111 1123456789999
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++..++++++ .++++++|.++++.. +.|.|.+.++ .++.||.||+|||+.
T Consensus 272 l~~~~~~~gv--~i~~~~~V~~I~~~~----------------------~~~~V~~~~g-----~~i~a~~vViAtG~~- 321 (517)
T PRK15317 272 LEEHVKEYDV--DIMNLQRASKLEPAA----------------------GLIEVELANG-----AVLKAKTVILATGAR- 321 (517)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEcCEEEECCCCC-
Confidence 9999999998 788899999998865 4578877655 479999999999964
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|+.|.++ |.+.|.+..++.+..++ ....++++|+|||+|.+|+|+|..|...+.. |+++.+.+.+.
T Consensus 322 --~r~~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~---Vtlv~~~~~l~ 387 (517)
T PRK15317 322 --WRNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKH---VTVLEFAPELK 387 (517)
T ss_pred --cCCCCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEECcccc
Confidence 6667777 77667666666554333 2335789999999999999999999887654 99999876421
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 388 -~--~--------------------------------------------------------------------------- 389 (517)
T PRK15317 388 -A--D--------------------------------------------------------------------------- 389 (517)
T ss_pred -c--c---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccccCcchhhhhc-cCcEEEeccC-ceeEecC-----cEEEc---CCc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVE-EGSIILKKSQ-DFSFCED-----GIVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~~-----~v~~~---~g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
..+.+.+. ..+|+++.+. +..+..+ .+++. +|+ +.+++|.|++|+|++|+..+ ++.
T Consensus 390 -----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--------l~~ 456 (517)
T PRK15317 390 -----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--------LKG 456 (517)
T ss_pred -----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--------Hhh
Confidence 00011222 2467887776 6666554 24443 232 23899999999999998543 333
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.-+.++.+.++..+.+++||||.
T Consensus 457 ~v~~~~~g~i~vd~~l~Ts~p~IyA 481 (517)
T PRK15317 457 TVELNRRGEIIVDARGATSVPGVFA 481 (517)
T ss_pred heeeCCCCcEEECcCCCCCCCCEEE
Confidence 2211345677777777889999996
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.93 E-value=7.5e-25 Score=220.49 Aligned_cols=279 Identities=13% Similarity=0.128 Sum_probs=175.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-------cCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-------FSDYPWPDSVTT 71 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-------~~~~~~~~~~~~ 71 (418)
|.++||+|||||++|+++|..|++.|.+++|||+++.+||.|.. +.|...+......+. |..++.+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~----- 77 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK----- 77 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc-----
Confidence 45789999999999999999999999999999998889998866 455544332222111 1111111
Q ss_pred CCCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 72 DFPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 72 ~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
...+..++..+ +....+++++ .+.. .++..++. +.+.|...+
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~~------------------------~~~~v~~~~ 130 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQ-GRARFVDP------------------------HTVEVECPD 130 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEecC------------------------CEEEEEeCC
Confidence 11233344333 3333444455 4443 34444432 225555433
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
+...++.||+||+|||+ .|..|+++ +... ..++++..+.. ....+++|+|||+|.+|+|+|.
T Consensus 131 ---g~~~~~~~d~lviATGs---~p~~p~~~---~~~~--~~v~~~~~~~~-------~~~~~~~v~IiGgG~~g~E~A~ 192 (461)
T PRK05249 131 ---GEVETLTADKIVIATGS---RPYRPPDV---DFDH--PRIYDSDSILS-------LDHLPRSLIIYGAGVIGCEYAS 192 (461)
T ss_pred ---CceEEEEcCEEEEcCCC---CCCCCCCC---CCCC--CeEEcHHHhhc-------hhhcCCeEEEECCCHHHHHHHH
Confidence 23357999999999995 46666655 3321 13444433332 2235799999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+++. +++... . .
T Consensus 193 ~l~~~g~~---Vtli~~~~~-~l~~~d-------~----~---------------------------------------- 217 (461)
T PRK05249 193 IFAALGVK---VTLINTRDR-LLSFLD-------D----E---------------------------------------- 217 (461)
T ss_pred HHHHcCCe---EEEEecCCC-cCCcCC-------H----H----------------------------------------
Confidence 99998765 999999875 333221 0 0
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCC
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
+.+.+.+.+++.+++++.+. +..++ +++ +++++|++ +++|.||+|+|++
T Consensus 218 -------------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~ 271 (461)
T PRK05249 218 -------------------------ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKADCLLYANGRT 271 (461)
T ss_pred -------------------------HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCE-EEeCEEEEeecCC
Confidence 00112234455677888775 66665 333 45567887 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 272 p~~~~l~------l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 307 (461)
T PRK05249 272 GNTDGLN------LENAGLEADSRGQLKVNENYQTAVPHIYA 307 (461)
T ss_pred ccccCCC------chhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence 9965321 1111111 345678888777788999985
No 13
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.93 E-value=6.6e-25 Score=218.95 Aligned_cols=266 Identities=16% Similarity=0.174 Sum_probs=171.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|||||||++|+.+|..|++. +.+|+|||+.+.++ |.. + ..|+- .............
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~------~----------~lp~~--~~~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FAN------C----------ALPYY--IGEVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--ccc------C----------Ccchh--hcCccCCHHHccc
Confidence 5899999999999999999886 56899999986443 111 0 00000 0011111122222
Q ss_pred H-HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 Y-IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~-l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+ .+.+.++.++ .++.+++|++|+... ..|.+.++.++....+.||+||+|||+
T Consensus 62 ~~~~~~~~~~~i--~v~~~~~V~~Id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 62 YTPEKFYDRKQI--TVKTYHEVIAINDER------------------------QTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred CCHHHHHHhCCC--EEEeCCEEEEEECCC------------------------CEEEEEECCCCcEEeeecCEEEECCCC
Confidence 2 1233455677 788889999998766 346555543344456899999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|..|+++ +. .++....+.... .... ....+++|+|||+|.+|+|+|..|...+.. |+++.++
T Consensus 116 ---~~~~~~~~---~~-----~~~~~~~~~~~~-~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~ 180 (438)
T PRK13512 116 ---SANSLGFE---SD-----ITFTLRNLEDTD-AIDQFIKANQVDKALVVGAGYISLEVLENLYERGLH---PTLIHRS 180 (438)
T ss_pred ---CCCCCCCC---CC-----CeEEecCHHHHH-HHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecc
Confidence 46666543 21 122221111100 0000 122468999999999999999999888765 9999998
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+. +.+... . .
T Consensus 181 ~~-l~~~~d-------~----~---------------------------------------------------------- 190 (438)
T PRK13512 181 DK-INKLMD-------A----D---------------------------------------------------------- 190 (438)
T ss_pred cc-cchhcC-------H----H----------------------------------------------------------
Confidence 75 233211 0 0
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC-C
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG-S 396 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~ 396 (418)
+.+.+.+.+++.+|+++.+. +..+++..+++++|++ +++|.||+|+|++++.++ +....+. +
T Consensus 191 -------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~-~~~D~vl~a~G~~pn~~~--------l~~~gl~~~ 254 (438)
T PRK13512 191 -------MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV-EHYDMIIEGVGTHPNSKF--------IESSNIKLD 254 (438)
T ss_pred -------HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE-EEeCEEEECcCCCcChHH--------HHhcCcccC
Confidence 01112345566678888876 7888877888888988 999999999999999543 3333232 3
Q ss_pred CCCCccceeeeeeccCcccc
Q 014821 397 PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (418)
.++.+.++..+.++.||||.
T Consensus 255 ~~G~i~Vd~~~~t~~~~IyA 274 (438)
T PRK13512 255 DKGFIPVNDKFETNVPNIYA 274 (438)
T ss_pred CCCcEEECCCcccCCCCEEE
Confidence 35678888777778999986
No 14
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.93 E-value=3.4e-24 Score=217.69 Aligned_cols=260 Identities=20% Similarity=0.254 Sum_probs=179.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|++.|.+++||++ .+||.+.....- ..+.. .......++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~---------~~~~~--------~~~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGI---------ENLIS--------VPYTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCc---------ccccc--------cCCCCHHHHHHH
Confidence 48999999999999999999999999999985 478776542110 00110 111245678888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.++++++ .++.+++|.+++... +.+.+.+.++ ..+.||+||+|||+.
T Consensus 273 l~~~l~~~gv--~i~~~~~V~~I~~~~----------------------~~~~v~~~~g-----~~i~~d~lIlAtGa~- 322 (515)
T TIGR03140 273 LEEHIKQYPI--DLMENQRAKKIETED----------------------GLIVVTLESG-----EVLKAKSVIVATGAR- 322 (515)
T ss_pred HHHHHHHhCC--eEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEeCEEEECCCCC-
Confidence 8888888888 788889999998755 4577777655 479999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
|+.|+++ |...+....++.+..+. .....+++|+|||+|.+|+|+|..|...+.. |+++.+.+...
T Consensus 323 --~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~---Vtli~~~~~l~ 388 (515)
T TIGR03140 323 --WRKLGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRH---VTVLEFADELK 388 (515)
T ss_pred --cCCCCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcE---EEEEEeCCcCC
Confidence 5667777 65545444444333222 2335689999999999999999999877654 99998765311
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .
T Consensus 389 ~---~--------------------------------------------------------------------------- 390 (515)
T TIGR03140 389 A---D--------------------------------------------------------------------------- 390 (515)
T ss_pred h---h---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred ccccCcchhhhhcc-CcEEEeccC-ceeEecC-----cEEEcC---Cc-eeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVEE-GSIILKKSQ-DFSFCED-----GIVVDG---QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~~-~~v~~~~~~-v~~~~~~-----~v~~~~---g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
..+.+.+++ .+|+++.+. +..+.++ +|++.+ |+ +.+++|.||+|+|+.|+..+++.
T Consensus 391 -----~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~-------- 457 (515)
T TIGR03140 391 -----KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKD-------- 457 (515)
T ss_pred -----HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhh--------
Confidence 001122332 467777775 6666544 255543 22 23899999999999999654432
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.-+..+.+.++..+.+++||||.
T Consensus 458 ~~~~~~~G~I~vd~~~~Ts~p~IyA 482 (515)
T TIGR03140 458 AVELNRRGEIVIDERGRTSVPGIFA 482 (515)
T ss_pred hcccCCCCeEEECCCCCCCCCCEEE
Confidence 2111335678888777779999995
No 15
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=1e-24 Score=218.11 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=170.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|+.+||+|||||++|+++|..|+++|.+|+|||+.+ .+||.|.. +.|...+..+.. ....| .......+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~----~~~~~----~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ----QHTDF----VRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc----cCCCH----HHHHHHHH
Confidence 888999999999999999999999999999999965 47888765 444322211110 00000 00000112
Q ss_pred HHHHHHHH-----HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 78 QVLDYIQS-----YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 78 ~~~~~l~~-----~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
.+.++++. ..+..++ .+.. .++..++. +.+.|...++ ..++.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~i~~------------------------~~~~v~~~~g----~~~~~~d 121 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVID-GQAEFINN------------------------HSLRVHRPEG----NLEIHGE 121 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEEE-EEEEEecC------------------------CEEEEEeCCC----eEEEEeC
Confidence 22233322 1111233 2332 34544432 2355554433 1369999
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
+||+|||+ .|..|+++ |.+.+.+ ++++..+.. ....+++|+|||+|.+|+|+|..|...+.. |
T Consensus 122 ~lviATGs---~p~~p~i~---G~~~~~~-v~~~~~~~~-------~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~---V 184 (441)
T PRK08010 122 KIFINTGA---QTVVPPIP---GITTTPG-VYDSTGLLN-------LKELPGHLGILGGGYIGVEFASMFANFGSK---V 184 (441)
T ss_pred EEEEcCCC---cCCCCCCC---CccCCCC-EEChhHhhc-------ccccCCeEEEECCCHHHHHHHHHHHHCCCe---E
Confidence 99999995 46777777 7654433 444333322 123467999999999999999999988765 9
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++.|++. ++|... ..
T Consensus 185 tli~~~~~-~l~~~~-----------~~---------------------------------------------------- 200 (441)
T PRK08010 185 TILEAASL-FLPRED-----------RD---------------------------------------------------- 200 (441)
T ss_pred EEEecCCC-CCCCcC-----------HH----------------------------------------------------
Confidence 99999774 444322 00
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEEc-CCceeeeccEEEEccCCCCCcchhccccchh
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVVD-GQTTPLKTDLVILATGFKGDVKLKNIFLSQT 388 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~~-~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~ 388 (418)
+...+.+.+++.+|+++.+. +.+++.+ .+.+. ++.+ +++|.||+|+|.+|+..+..
T Consensus 201 -------------~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~------ 260 (441)
T PRK08010 201 -------------IADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGRQPATASLH------ 260 (441)
T ss_pred -------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecCCcCCCCcC------
Confidence 00112335566678888776 7777643 34433 2335 88999999999999954321
Q ss_pred hhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 389 FQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+. +.++.+.++..+.++.||||.
T Consensus 261 ~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA 289 (441)
T PRK08010 261 PENAGIAVNERGAIVVDKYLHTTADNIWA 289 (441)
T ss_pred chhcCcEECCCCcEEECCCcccCCCCEEE
Confidence 1111121 345778888888788999985
No 16
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=216.19 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=172.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
|++++|||||||++|+.+|..|.+.+.+|+|||+++.+ .|. |..........+..++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~------~~~----------------~~l~~~~~g~~~~~~~~ 65 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM------LFT----------------PLLPQTTTGTLEFRSIC 65 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc------chh----------------hhHHHhcccCCChHHhH
Confidence 45789999999999999999998777899999997622 111 00000011111223444
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC---CCceeEEEeCEEEEe
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK---NHSTEVHQVDFVILC 157 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~i~~d~vIlA 157 (418)
..++.....++. .+...+|++|+... +...+...+.. +....++.||+||+|
T Consensus 66 ~~~~~~~~~~~~---~~i~~~V~~Id~~~----------------------~~v~~~~~~~~~~~~~~g~~i~yD~LViA 120 (424)
T PTZ00318 66 EPVRPALAKLPN---RYLRAVVYDVDFEE----------------------KRVKCGVVSKSNNANVNTFSVPYDKLVVA 120 (424)
T ss_pred HHHHHHhccCCe---EEEEEEEEEEEcCC----------------------CEEEEecccccccccCCceEecCCEEEEC
Confidence 445555555554 34558999998766 33333221110 012357999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCC---chhhhh-------------hhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSD---MDYEAA-------------ANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
||+. |..|.+| |..++ .+....+.+ ...... ......++|+|||+|.+|+|+|.+
T Consensus 121 tGs~---~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~ 191 (424)
T PTZ00318 121 HGAR---PNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAE 191 (424)
T ss_pred CCcc---cCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHH
Confidence 9954 6666666 65432 111111110 000000 011223599999999999999999
Q ss_pred HhhhcC-----------CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHH
Q 014821 222 CTTANG-----------LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAIS 290 (418)
Q Consensus 222 l~~~~~-----------~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (418)
|..... ...+|+++++.+.. ++... ..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-l~~~~-----------~~------------------------------ 229 (424)
T PTZ00318 192 LADFFRDDVRNLNPELVEECKVTVLEAGSEV-LGSFD-----------QA------------------------------ 229 (424)
T ss_pred HHHHHHHHHHhhhhcccccCEEEEEcCCCcc-cccCC-----------HH------------------------------
Confidence 986310 12469999988753 33221 00
Q ss_pred HHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEE
Q 014821 291 KFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVI 369 (418)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi 369 (418)
+.+.+.+.+++.+|+++.+. +.+++++.|.+++|++ +++|.||
T Consensus 230 -----------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~-i~~d~vi 273 (424)
T PTZ00318 230 -----------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEV-IPTGLVV 273 (424)
T ss_pred -----------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCE-EEccEEE
Confidence 11222346677789999876 8899988999999998 9999999
Q ss_pred EccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 370 LATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 370 ~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
||+|.+++. +.+.++.. .+.+|++.++..+ .+++||||.
T Consensus 274 ~~~G~~~~~-~~~~~~l~-------~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 274 WSTGVGPGP-LTKQLKVD-------KTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred EccCCCCcc-hhhhcCCc-------ccCCCcEEeCCCcccCCCCCEEE
Confidence 999999872 33333221 1446789998888 789999995
No 17
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=9.4e-24 Score=197.09 Aligned_cols=332 Identities=21% Similarity=0.259 Sum_probs=212.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCCcceecC-----------CccccccCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQT-----------PKQLYQFSDYPWP 66 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~~~~l~~-----------~~~~~~~~~~~~~ 66 (418)
|+..|++.||-||+-|++|+.|..++ .+...+|+.+.+ .|+. ..++..+++ |...|+|.++...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35689999999999999999999875 689999997654 5776 666666665 4455555544333
Q ss_pred CCC-------CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE--EE
Q 014821 67 DSV-------TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT--VA 137 (418)
Q Consensus 67 ~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~ 137 (418)
.++ ..+++++.++.+|++|.++++. .++|+++|.+|...+ . +...+ +.
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~-~-------------------d~~~~~~~~ 137 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD-G-------------------DAVVRLFVV 137 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC-C-------------------cceeEEEEE
Confidence 222 5778899999999999999883 699999999873322 1 12222 33
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCC-ceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH-GKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
..++ .++.|+.||+++| ..|.+|+. ...+. +.++|+++|.... .+.....+|+|||+|.||.
T Consensus 138 t~~~-----~~y~ar~lVlg~G---~~P~IP~~-----f~~l~~~~vfHss~~~~~~----~~~~~~~~V~ViG~GQSAA 200 (436)
T COG3486 138 TANG-----TVYRARNLVLGVG---TQPYIPPC-----FRSLIGERVFHSSEYLERH----PELLQKRSVTVIGSGQSAA 200 (436)
T ss_pred cCCC-----cEEEeeeEEEccC---CCcCCChH-----HhCcCccceeehHHHHHhh----HHhhcCceEEEEcCCccHH
Confidence 3333 4899999999999 45888862 22222 3799999997644 2334445599999999999
Q ss_pred HHHHHHhhhcCC-CCCeEEEEecCcccccCCCCCCCcchhh-hhhHHHHHhhcCCCchhHH--HHHHhhhh----HHHHH
Q 014821 217 DIAMECTTANGL-ENPCTVLYRTEHWNIPDYFPWGFPLAYL-YLNRFAELLVHKPGEGFLL--SLLATMLS----PLRWA 288 (418)
Q Consensus 217 e~a~~l~~~~~~-~~~V~~~~r~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~ 288 (418)
|+...|...-.. ..++.|++|+..+....+. ++... ++....+++..+|.+.... ......+. .....
T Consensus 201 Ei~~~Ll~~~~~~~~~l~witR~~gf~p~d~S----kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~ 276 (436)
T COG3486 201 EIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS----KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEE 276 (436)
T ss_pred HHHHHHHhCCCCcCccceeeeccCCCCccccc----hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHH
Confidence 999999875433 2348999999987766665 33333 4456777777777543322 21222221 22222
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEE-------c
Q 014821 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVV-------D 357 (418)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~-------~ 357 (418)
+.+.+.. +.... .+.++.++.+. +..++..+ +.+ .
T Consensus 277 Iy~~lY~---~~l~~-------------------------------~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~ 322 (436)
T COG3486 277 IYDLLYE---QSLGG-------------------------------RKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETG 322 (436)
T ss_pred HHHHHHH---HHhcC-------------------------------CCCCeeeccccceeeeecCCCceEEEEEeeccCC
Confidence 2222221 11110 12234444443 45554332 322 1
Q ss_pred CCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccC----ccccc
Q 014821 358 GQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYID----TLTYQ 417 (418)
Q Consensus 358 ~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~ 417 (418)
+.++ +++|+||+||||+.... .|-.+ |.+.+..+..+++.+.... +-+-+ .||+|
T Consensus 323 ~~~t-~~~D~vIlATGY~~~~P---~fL~~-l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvq 382 (436)
T COG3486 323 ELET-VETDAVILATGYRRAVP---SFLEG-LADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQ 382 (436)
T ss_pred CceE-EEeeEEEEecccccCCc---hhhhh-HHHhhcccccCCeEecCceeeecCCCCcceEEEe
Confidence 2345 89999999999996632 22223 4455666888888887777 32212 57776
No 18
>PRK06116 glutathione reductase; Validated
Probab=99.92 E-value=2.6e-24 Score=215.74 Aligned_cols=274 Identities=18% Similarity=0.248 Sum_probs=171.7
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc-cC----CCCCCCCCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ-FS----DYPWPDSVTTD 72 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~-~~----~~~~~~~~~~~ 72 (418)
|. .+||+|||||++|+++|..|+++|.+|+|||+. .+||.|.. +.|+..+.......+ +. .+.+... ..
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~- 77 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-EN- 77 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CC-
Confidence 53 689999999999999999999999999999995 79998766 555543332221111 00 0111100 00
Q ss_pred CCChhHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 73 FPDHNQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 73 ~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
......+.+ .++....+.++ ++.. .++..++. .+|.+ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-g~~~~v~~--------------------------~~v~~-~g 127 (450)
T PRK06116 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIE-GFARFVDA--------------------------HTVEV-NG 127 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC--------------------------CEEEE-CC
Confidence 011122222 22233344455 4444 34444432 24555 33
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
.++.||+||+|||+ .|..|+++ |.+ .++++..+... ...+++|+|||+|.+|+|+|..
T Consensus 128 -----~~~~~d~lViATGs---~p~~p~i~---g~~----~~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~ 185 (450)
T PRK06116 128 -----ERYTADHILIATGG---RPSIPDIP---GAE----YGITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGV 185 (450)
T ss_pred -----EEEEeCEEEEecCC---CCCCCCCC---Ccc----eeEchhHhhCc-------cccCCeEEEECCCHHHHHHHHH
Confidence 47999999999994 57777777 654 23333332221 1346899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
|...+.. |+++.|.+.+ ++... . .
T Consensus 186 l~~~g~~---Vtlv~~~~~~-l~~~~-------~----~----------------------------------------- 209 (450)
T PRK06116 186 LNGLGSE---THLFVRGDAP-LRGFD-------P----D----------------------------------------- 209 (450)
T ss_pred HHHcCCe---EEEEecCCCC-ccccC-------H----H-----------------------------------------
Confidence 9888765 9999987752 22211 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EEEcCCceeeeccEEEEccCCC
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
+...+.+.+++.+|+++.+. +.+++. ++ +.+++|++ +++|.||+|+|++
T Consensus 210 ------------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~-i~~D~Vv~a~G~~ 264 (450)
T PRK06116 210 ------------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGET-LTVDCLIWAIGRE 264 (450)
T ss_pred ------------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcE-EEeCEEEEeeCCC
Confidence 01112234566678888776 777753 22 56678888 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+..... +....+. +.++.+.++..+.++.||||.
T Consensus 265 p~~~~l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA 300 (450)
T PRK06116 265 PNTDGLG------LENAGVKLNEKGYIIVDEYQNTNVPGIYA 300 (450)
T ss_pred cCCCCCC------chhcCceECCCCcEecCCCCCcCCCCEEE
Confidence 9954211 1111111 345678888777789999995
No 19
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.92 E-value=2.3e-24 Score=215.52 Aligned_cols=275 Identities=16% Similarity=0.213 Sum_probs=168.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (418)
+.+||+|||||++|+++|..|++.|.+|+|+|+ ..+||.+.. +.|...+...+..+.. ..+.+.... ....+
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~ 78 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNL-ENTFN 78 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCC-cCccC
Confidence 468999999999999999999999999999999 469998776 6666543333222211 111111100 00011
Q ss_pred hhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+..+ +....++.++ .++.++.+ .. .+ .+|.+ ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~-~~--~~------------------------~~v~v-~~--- 125 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHAR-FT--KD------------------------GTVEV-NG--- 125 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Ec--cC------------------------CEEEE-CC---
Confidence 1222222 2233334455 45554322 11 11 23444 22
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCC-CCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIP-EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
..+.||+||+|||+ .|..| +++ |.+. .+.+..+..+ ...+++|+|||+|.+|+|+|..|.
T Consensus 126 --~~~~~d~vIiAtGs---~p~~p~~i~---g~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~ 186 (450)
T TIGR01421 126 --RDYTAPHILIATGG---KPSFPENIP---GAEL----GTDSDGFFAL-------EELPKRVVIVGAGYIAVELAGVLH 186 (450)
T ss_pred --EEEEeCEEEEecCC---CCCCCCCCC---CCce----eEcHHHhhCc-------cccCCeEEEECCCHHHHHHHHHHH
Confidence 46999999999995 56777 677 6531 1222222221 123689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.|.+.. ++... ..
T Consensus 187 ~~g~~---Vtli~~~~~i-l~~~d-------~~----------------------------------------------- 208 (450)
T TIGR01421 187 GLGSE---THLVIRHERV-LRSFD-------SM----------------------------------------------- 208 (450)
T ss_pred HcCCc---EEEEecCCCC-CcccC-------HH-----------------------------------------------
Confidence 88765 9999998753 33222 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC-----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+.+++.+|+++.+. +..++.+ .+++++|++.+++|.||+|+|++|+
T Consensus 209 ----------------------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 209 ----------------------ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred ----------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 01112234556678888875 6666532 2566777433999999999999999
Q ss_pred cchhccccchhhhhhhc-CCCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLA-GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..... +....+ .+.++.+.++..+.++.||||.
T Consensus 267 ~~~l~------l~~~g~~~~~~G~i~vd~~~~T~~p~IyA 300 (450)
T TIGR01421 267 TKGLG------LENVGIKLNEKGQIIVDEYQNTNVPGIYA 300 (450)
T ss_pred cccCC------ccccCcEECCCCcEEeCCCCcCCCCCEEE
Confidence 65321 111111 1345678888777888999985
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.92 E-value=3.1e-24 Score=216.01 Aligned_cols=278 Identities=14% Similarity=0.167 Sum_probs=171.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|+++|..|+++|++|+|+|+.. +||.|.. +.|...+......+.+. .+.+.. .......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 80 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA--ENVGIDF 80 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc--CCCccCH
Confidence 5899999999999999999999999999999966 9998866 66665544433333221 111111 1112344
Q ss_pred hHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
.++.+|.+. ..++.++ ++.. .++..++.. .+.|...++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~~~~~------------------------~~~v~~~~~---~ 130 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIR-GEAKLVDPN------------------------TVRVMTEDG---E 130 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccCC------------------------EEEEecCCC---c
Confidence 556666433 3334454 3443 344444322 234432221 1
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+. |..| + |.+.....++++.+... ....+++++|||+|.+|+|+|..|...
T Consensus 131 -~~~~~d~lViAtGs~---p~~~--p---g~~~~~~~v~~~~~~~~-------~~~~~~~vvVvGgG~~g~E~A~~l~~~ 194 (462)
T PRK06416 131 -QTYTAKNIILATGSR---PREL--P---GIEIDGRVIWTSDEALN-------LDEVPKSLVVIGGGYIGVEFASAYASL 194 (462)
T ss_pred -EEEEeCEEEEeCCCC---CCCC--C---CCCCCCCeEEcchHhhC-------ccccCCeEEEECCCHHHHHHHHHHHHc
Confidence 579999999999965 5433 2 33211112333222222 113468999999999999999999888
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|.+. ++|... . .
T Consensus 195 g~~---Vtli~~~~~-~l~~~~-------~----~--------------------------------------------- 214 (462)
T PRK06416 195 GAE---VTIVEALPR-ILPGED-------K----E--------------------------------------------- 214 (462)
T ss_pred CCe---EEEEEcCCC-cCCcCC-------H----H---------------------------------------------
Confidence 765 999999875 333221 0 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCC---ceeeeccEEEEccCCCCC
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQ---TTPLKTDLVILATGFKGD 377 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g---~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.+++| ++ +++|.||+|+|++|+
T Consensus 215 --------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~-i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 215 --------------------ISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEET-LEADYVLVAVGRRPN 273 (462)
T ss_pred --------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEE-EEeCEEEEeeCCccC
Confidence 00112234455678888876 7777643 3 344555 55 999999999999999
Q ss_pred cchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 378 VKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..+.. +....+...++.+.++..+.++.|+||.
T Consensus 274 ~~~l~------l~~~gl~~~~g~i~vd~~~~t~~~~VyA 306 (462)
T PRK06416 274 TENLG------LEELGVKTDRGFIEVDEQLRTNVPNIYA 306 (462)
T ss_pred CCCCC------chhcCCeecCCEEeECCCCccCCCCEEE
Confidence 55421 1122221225667777777788999985
No 21
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.92 E-value=1.3e-23 Score=215.09 Aligned_cols=176 Identities=24% Similarity=0.362 Sum_probs=128.5
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
|+ .+||+|||||+|||++|..|++.|++++|||++ .+||.+..... ...+| ........++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~------------i~~~p-----g~~~~~~~~l 62 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE------------VVNYP-----GILNTTGPEL 62 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc------------cccCC-----CCcCCCHHHH
Confidence 54 489999999999999999999999999999995 67876543111 00011 0112344678
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+++++.++++++ .+ ++++|++++... +.+.|.+.++ .+.+++||+|||
T Consensus 63 ~~~l~~~~~~~gv--~~-~~~~V~~i~~~~----------------------~~~~V~~~~g------~~~a~~lVlATG 111 (555)
T TIGR03143 63 MQEMRQQAQDFGV--KF-LQAEVLDVDFDG----------------------DIKTIKTARG------DYKTLAVLIATG 111 (555)
T ss_pred HHHHHHHHHHcCC--EE-eccEEEEEEecC----------------------CEEEEEecCC------EEEEeEEEECCC
Confidence 8899988888887 55 467888888654 3466665443 588999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 160 ~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+. |+.|+++ |.+.+.+..++.+..+. .....+++|+|||+|.+|+|+|..|...+.. |+++.|.+
T Consensus 112 a~---p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~---Vtli~~~~ 176 (555)
T TIGR03143 112 AS---PRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYASK---VTVIVREP 176 (555)
T ss_pred Cc---cCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCCE---EEEEEeCC
Confidence 64 7777777 76555454455433332 2345689999999999999999999877654 99999987
Q ss_pred c
Q 014821 240 H 240 (418)
Q Consensus 240 ~ 240 (418)
.
T Consensus 177 ~ 177 (555)
T TIGR03143 177 D 177 (555)
T ss_pred c
Confidence 4
No 22
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.92 E-value=1e-23 Score=207.26 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=182.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCC-----CCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSD-----YPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~ 73 (418)
|..||++|||+|++|..+|..+++.|.++.++|+...+||++.. +.|+..+...+..+.... +.+... ..-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CCC
Confidence 45799999999999999999999999999999997789999888 788777665554432111 111111 101
Q ss_pred CChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 74 PDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 74 ~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
.+..++..+.+. ..+.+++ .++. ....-++. .+|.+...
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V--~vi~-G~a~f~~~--------------------------~~v~V~~~- 129 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGV--DVIR-GEARFVDP--------------------------HTVEVTGE- 129 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCC--EEEE-EEEEECCC--------------------------CEEEEcCC-
Confidence 222233333222 2333333 2222 22222221 23544442
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
..++++++++|+||| +.|..|+++ +++.- .++.+..... ...-+++++|||+|.+|+|+|..+
T Consensus 130 --~~~~~~a~~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~-------~~~lP~~lvIiGgG~IGlE~a~~~ 192 (454)
T COG1249 130 --DKETITADNIIIATG---SRPRIPPGP---GIDGA--RILDSSDALF-------LLELPKSLVIVGGGYIGLEFASVF 192 (454)
T ss_pred --CceEEEeCEEEEcCC---CCCcCCCCC---CCCCC--eEEechhhcc-------cccCCCEEEEECCCHHHHHHHHHH
Confidence 236899999999999 567777766 54432 2343333222 125689999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...|.. ||++.|.++ ++|..+ .
T Consensus 193 ~~LG~~---VTiie~~~~-iLp~~D-----------~------------------------------------------- 214 (454)
T COG1249 193 AALGSK---VTVVERGDR-ILPGED-----------P------------------------------------------- 214 (454)
T ss_pred HHcCCc---EEEEecCCC-CCCcCC-----------H-------------------------------------------
Confidence 999886 999999986 555443 0
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCc--eeeeccEEEEccCCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQT--TPLKTDLVILATGFK 375 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~--~~~~~D~Vi~atG~~ 375 (418)
.+.+.+.+.++++.++++.+. +..++.+ .+.+++|+ + +++|.|++|+|.+
T Consensus 215 ----------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~-~~ad~vLvAiGR~ 271 (454)
T COG1249 215 ----------------------EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGT-IEADAVLVAIGRK 271 (454)
T ss_pred ----------------------HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCE-EEeeEEEEccCCc
Confidence 011223345566778888886 5555543 26677776 5 8999999999999
Q ss_pred CCcchhccccchhhhhhhcCC-CCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAGS-PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+.+ .--|+...+.. ..+.+.++..+-+++|+||.
T Consensus 272 Pn~~------~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA 307 (454)
T COG1249 272 PNTD------GLGLENAGVELDDRGFIKVDDQMTTNVPGIYA 307 (454)
T ss_pred cCCC------CCChhhcCceECCCCCEEeCCccccCCCCEEE
Confidence 9943 11233334433 34789999555888999984
No 23
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.92 E-value=4.1e-24 Score=213.84 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=172.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..+++.|.+|+|+|+ ..+||.+.. +.|...+...+...+ +..+.+... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 58999999999999999999999999999999 579998776 666655433322211 111111110 001111
Q ss_pred h-----------HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 N-----------QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~-----------~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
. .+.++++...++.++ ++.. .++..++.+. ..+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~v~~~~------------------------v~v~-~~g---- 126 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLE-GRARLVGPNT------------------------VEVL-QDG---- 126 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-EEEEEecCCE------------------------EEEe-cCC----
Confidence 1 223344445555566 4544 4665554332 3332 222
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+ .|..|+++ |.+. .+.+..... ....+++++|||+|.+|+|+|..+...
T Consensus 127 -~~~~~d~lIiATGs---~p~~p~i~---G~~~----~~~~~~~~~-------l~~~~~~vvVIGgG~~g~E~A~~l~~~ 188 (446)
T TIGR01424 127 -TTYTAKKILIAVGG---RPQKPNLP---GHEL----GITSNEAFH-------LPTLPKSILILGGGYIAVEFAGIWRGL 188 (446)
T ss_pred -eEEEcCEEEEecCC---cCCCCCCC---Cccc----eechHHhhc-------ccccCCeEEEECCcHHHHHHHHHHHHc
Confidence 47999999999994 57777777 6532 122111111 112478999999999999999999887
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.+.+. +++... . .+
T Consensus 189 G~~---Vtli~~~~~-~l~~~d-------~----~~-------------------------------------------- 209 (446)
T TIGR01424 189 GVQ---VTLIYRGEL-ILRGFD-------D----DM-------------------------------------------- 209 (446)
T ss_pred CCe---EEEEEeCCC-CCcccC-------H----HH--------------------------------------------
Confidence 765 999998774 233211 0 00
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.+.+.+.+++.+++++.+. +..++. ++ +.+.+|++ +++|.||+|+|++|+...
T Consensus 210 ---------------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~viva~G~~pn~~~ 267 (446)
T TIGR01424 210 ---------------------RALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEE-IVADVVLFATGRSPNTKG 267 (446)
T ss_pred ---------------------HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcE-eecCEEEEeeCCCcCCCc
Confidence 0111234455678888775 666653 23 55667888 999999999999999543
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 268 l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA 298 (446)
T TIGR01424 268 LG------LEAAGVELNDAGAIAVDEYSRTSIPSIYA 298 (446)
T ss_pred CC------ccccCeEECCCCcEEeCCCCccCCCCEEE
Confidence 21 1111121 345678888878779999995
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=1.6e-23 Score=209.36 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=164.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC-CCccccc--cCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-IGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~-~gg~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+.+. +||.+.. +.|...+...... . .+..
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~----~-----------~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK----N-----------LSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----C-----------CCHH
Confidence 7889999999999999999999999999999999764 5877543 3443322111110 0 0111
Q ss_pred HHHHHHH-----------HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 78 QVLDYIQ-----------SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 78 ~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.+..+.+ ....+.++ .+.. .++..++ . .+|.+..+ +..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~-g~~~~~~--~------------------------~~v~v~~~--~~~ 114 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYD-AEAHFVS--N------------------------KVIEVQAG--DEK 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEcc--C------------------------CEEEEeeC--CCc
Confidence 2222211 22233343 2332 2222221 1 23444432 122
Q ss_pred eEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
.++.||+||+|||+. |..|+++ |.+... .++++..+... ...+++|+|||+|.+|+|+|..|...+
T Consensus 115 ~~~~~d~vViATGs~---~~~p~i~---G~~~~~-~v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g 180 (438)
T PRK07251 115 IELTAETIVINTGAV---SNVLPIP---GLADSK-HVYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLG 180 (438)
T ss_pred EEEEcCEEEEeCCCC---CCCCCCC---CcCCCC-cEEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 579999999999954 6777777 654332 24443333221 134789999999999999999998877
Q ss_pred CCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhccc
Q 014821 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (418)
Q Consensus 227 ~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (418)
.. |+++.|++. +++... ..+
T Consensus 181 ~~---Vtli~~~~~-~l~~~~-----------~~~--------------------------------------------- 200 (438)
T PRK07251 181 SK---VTVLDAAST-ILPREE-----------PSV--------------------------------------------- 200 (438)
T ss_pred Ce---EEEEecCCc-cCCCCC-----------HHH---------------------------------------------
Confidence 65 999999875 333221 000
Q ss_pred CCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEE-EcCCceeeeccEEEEccCCCCCcchhc
Q 014821 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIV-VDGQTTPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~-~~~g~~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
...+.+.+++.+|+++.+. +..++.+ .+. ..+|++ +++|.||+|+|.+|+.+...
T Consensus 201 --------------------~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~-i~~D~viva~G~~p~~~~l~ 259 (438)
T PRK07251 201 --------------------AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET-YRFDALLYATGRKPNTEPLG 259 (438)
T ss_pred --------------------HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE-EEcCEEEEeeCCCCCcccCC
Confidence 0011234455677887775 6666543 333 345777 99999999999999954321
Q ss_pred cccchhhhhhhc-CCCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLA-GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+ .+.++.+.++..+.++.||||.
T Consensus 260 ------l~~~~~~~~~~g~i~vd~~~~t~~~~Iya 288 (438)
T PRK07251 260 ------LENTDIELTERGAIKVDDYCQTSVPGVFA 288 (438)
T ss_pred ------chhcCcEECCCCcEEECCCcccCCCCEEE
Confidence 111111 1345668888777778999985
No 25
>PLN02507 glutathione reductase
Probab=99.92 E-value=4.5e-24 Score=215.54 Aligned_cols=279 Identities=16% Similarity=0.174 Sum_probs=173.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEee---------CCCCCccccc--cCCcceecCCcccccc----CCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA---------RSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPD 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~---------~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~ 67 (418)
.+||+|||||++|+.+|..++++|.+|.|||+ ...+||.|.. ++|...+...+..+.. ..+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 48999999999999999999999999999996 3568999877 7776665443332210 1111110
Q ss_pred CCCCCCCChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 68 SVTTDFPDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
. ...-.+...+.++... .....++ .+. ..++..++.+. +.|
T Consensus 105 ~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd~~~------------------------v~V 156 (499)
T PLN02507 105 N-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVGPNE------------------------VEV 156 (499)
T ss_pred C-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEecCCE------------------------EEE
Confidence 0 0001122333333222 2222333 222 24555554333 666
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
...++ ...++.||+||+|||+ .|..|.++ |.+. ..++.+... ....+++|+|||+|.+|+
T Consensus 157 ~~~~g---~~~~~~~d~LIIATGs---~p~~p~ip---G~~~----~~~~~~~~~-------l~~~~k~vvVIGgG~ig~ 216 (499)
T PLN02507 157 TQLDG---TKLRYTAKHILIATGS---RAQRPNIP---GKEL----AITSDEALS-------LEELPKRAVVLGGGYIAV 216 (499)
T ss_pred EeCCC---cEEEEEcCEEEEecCC---CCCCCCCC---Cccc----eechHHhhh-------hhhcCCeEEEECCcHHHH
Confidence 65443 3346899999999995 46777777 6432 122211111 113468999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHH
Q 014821 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (418)
|+|..+...+.. |+++.|.+. +++... . .
T Consensus 217 E~A~~l~~~G~~---Vtli~~~~~-~l~~~d-------~----~------------------------------------ 245 (499)
T PLN02507 217 EFASIWRGMGAT---VDLFFRKEL-PLRGFD-------D----E------------------------------------ 245 (499)
T ss_pred HHHHHHHHcCCe---EEEEEecCC-cCcccC-------H----H------------------------------------
Confidence 999999888765 999998774 222211 0 0
Q ss_pred HHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEc
Q 014821 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILA 371 (418)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~a 371 (418)
+...+.+.+++.+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|
T Consensus 246 -----------------------------~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~-i~~D~vl~a 295 (499)
T PLN02507 246 -----------------------------MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEE-FVADVVLFA 295 (499)
T ss_pred -----------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcE-EEcCEEEEe
Confidence 00112234556678888876 667653 23 55667888 999999999
Q ss_pred cCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 296 ~G~~pn~~~l~------l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA 335 (499)
T PLN02507 296 TGRAPNTKRLN------LEAVGVELDKAGAVKVDEYSRTNIPSIWA 335 (499)
T ss_pred ecCCCCCCCCC------chhhCcEECCCCcEecCCCCcCCCCCEEE
Confidence 99999954321 1222221 345778888888889999995
No 26
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.92 E-value=1.1e-23 Score=206.57 Aligned_cols=262 Identities=18% Similarity=0.204 Sum_probs=167.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|+ ++|||||||+||+.+|..|++. +.+|+||++.+.. .|....+ ...+ .. .....+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------~y~~~~l-----~~~~---------~~-~~~~~~ 58 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------EYNKPDL-----SHVF---------SQ-GQRADD 58 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------CcCcCcC-----cHHH---------hC-CCCHHH
Confidence 53 6899999999999999999885 4589999997521 1110000 0000 01 111223
Q ss_pred HHH-HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 79 VLD-YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 79 ~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
+.. ...++.+++++ .++++++|++++... ..|.+. + ..+.||+||+|
T Consensus 59 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~-~-----~~~~yd~LVlA 106 (377)
T PRK04965 59 LTRQSAGEFAEQFNL--RLFPHTWVTDIDAEA------------------------QVVKSQ-G-----NQWQYDKLVLA 106 (377)
T ss_pred hhcCCHHHHHHhCCC--EEECCCEEEEEECCC------------------------CEEEEC-C-----eEEeCCEEEEC
Confidence 333 24556677788 788889999998765 456543 3 47999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
||+ .|..|+++ |.+. ++....+.+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+
T Consensus 107 TG~---~~~~p~i~---G~~~----v~~~~~~~~~~-~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~ 172 (377)
T PRK04965 107 TGA---SAFVPPIP---GREL----MLTLNSQQEYR-AAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDN 172 (377)
T ss_pred CCC---CCCCCCCC---CCce----EEEECCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEec
Confidence 995 46777777 6542 22222111110 0112334678999999999999999999988765 999998
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+.. .+... + ..
T Consensus 173 ~~~~-l~~~~------~----~~--------------------------------------------------------- 184 (377)
T PRK04965 173 AASL-LASLM------P----PE--------------------------------------------------------- 184 (377)
T ss_pred CCcc-cchhC------C----HH---------------------------------------------------------
Confidence 7752 22110 0 00
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
..+.+.+.+++.+|+++.+. +..++.+ .+.+++|++ +++|.||+|+|++++..+.+.+
T Consensus 185 --------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vI~a~G~~p~~~l~~~~-------- 247 (377)
T PRK04965 185 --------VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRS-IEVDAVIAAAGLRPNTALARRA-------- 247 (377)
T ss_pred --------HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcE-EECCEEEECcCCCcchHHHHHC--------
Confidence 01112234455567777665 6666643 267788988 9999999999999985544332
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.+.... .+.++..+.++.||||.
T Consensus 248 gl~~~~-gi~vd~~l~ts~~~VyA 270 (377)
T PRK04965 248 GLAVNR-GIVVDSYLQTSAPDIYA 270 (377)
T ss_pred CCCcCC-CEEECCCcccCCCCEEE
Confidence 232333 47777777778999985
No 27
>PRK06370 mercuric reductase; Validated
Probab=99.92 E-value=5.9e-24 Score=213.88 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=168.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFP 74 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 74 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+. .+||.|.. +.|...+...+..+... .+.+... .....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 80 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVSV 80 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCcc
Confidence 56799999999999999999999999999999994 68888766 45544332222221111 1111100 00112
Q ss_pred ChhHHHHHHHHH-----------HHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 75 DHNQVLDYIQSY-----------ASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 75 ~~~~~~~~l~~~-----------~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
+...+.++.+.. .++. ++ .++.++.+ .++ . .+|.+. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~-~~~--~------------------------~~v~v~-~- 129 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHAR-FES--P------------------------NTVRVG-G- 129 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEE-Ecc--C------------------------CEEEEC-c-
Confidence 333444333322 2332 44 44443322 111 1 235442 2
Q ss_pred CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHH
Q 014821 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l 222 (418)
.++.||+||+|||+ .|..|+++ |.+.. .++.+..... ....+++|+|||+|.+|+|+|..|
T Consensus 130 ----~~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~-------~~~~~~~vvVIGgG~~g~E~A~~l 190 (463)
T PRK06370 130 ----ETLRAKRIFINTGA---RAAIPPIP---GLDEV--GYLTNETIFS-------LDELPEHLVIIGGGYIGLEFAQMF 190 (463)
T ss_pred ----EEEEeCEEEEcCCC---CCCCCCCC---CCCcC--ceEcchHhhC-------ccccCCEEEEECCCHHHHHHHHHH
Confidence 47999999999995 57777777 65432 2333333222 123478999999999999999999
Q ss_pred hhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014821 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (418)
Q Consensus 223 ~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (418)
...+.. |+++.+.+. +++... . .+
T Consensus 191 ~~~G~~---Vtli~~~~~-~l~~~~-------~----~~----------------------------------------- 214 (463)
T PRK06370 191 RRFGSE---VTVIERGPR-LLPRED-------E----DV----------------------------------------- 214 (463)
T ss_pred HHcCCe---EEEEEcCCC-CCcccC-------H----HH-----------------------------------------
Confidence 988765 999999875 333221 0 00
Q ss_pred hcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEE--cC-CceeeeccEEEEccCC
Q 014821 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVV--DG-QTTPLKTDLVILATGF 374 (418)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~--~~-g~~~~~~D~Vi~atG~ 374 (418)
.+.+.+.+++.+|+++.+. +..++.+ + +.+ .+ +++ +++|.||+|+|+
T Consensus 215 ------------------------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~Vi~A~G~ 269 (463)
T PRK06370 215 ------------------------AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGR 269 (463)
T ss_pred ------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEECcCC
Confidence 0111234455678888775 6666543 2 333 23 345 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..... +....+. +.++.+.++..+.++.||||.
T Consensus 270 ~pn~~~l~------l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 270 VPNTDDLG------LEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CcCCCCcC------chhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99954110 1111111 345678888878778999985
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.91 E-value=5.3e-24 Score=214.33 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=168.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCCC-CCCCCCCCCCChh---
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYP-WPDSVTTDFPDHN--- 77 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 77 (418)
+||+|||||++|+++|..|++.|++|+|||+. .+||.|.. +.|...+......+++.... +.........+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999999999999999995 49999876 56655544333332221110 0000001111222
Q ss_pred ----HHHHHH-----HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE
Q 014821 78 ----QVLDYI-----QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (418)
Q Consensus 78 ----~~~~~l-----~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 148 (418)
++..++ ....+++++ .+.. .++..++ ..+|.+.++ ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-g~~~~~~--------------------------~~~v~v~~g----~~~ 126 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGV--DYLR-GRARFKD--------------------------PKTVKVDLG----REV 126 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCc--EEEE-EEEEEcc--------------------------CCEEEEcCC----eEE
Confidence 222222 223344455 3433 3333221 134655442 246
Q ss_pred EEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 149 i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
+.+|+||+|||+ .|..|+++ |.+.. .++++...... ...+++++|||+|.+|+|+|..|...+..
T Consensus 127 ~~~~~lIiATGs---~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~~ 191 (463)
T TIGR02053 127 RGAKRFLIATGA---RPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGSE 191 (463)
T ss_pred EEeCEEEEcCCC---CCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 899999999995 57777777 66543 23433332221 12358999999999999999999988765
Q ss_pred CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCC
Q 014821 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGM 308 (418)
Q Consensus 229 ~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (418)
|+++.+.+. ++|... . .
T Consensus 192 ---Vtli~~~~~-~l~~~d-------~----~------------------------------------------------ 208 (463)
T TIGR02053 192 ---VTILQRSDR-LLPREE-------P----E------------------------------------------------ 208 (463)
T ss_pred ---EEEEEcCCc-CCCccC-------H----H------------------------------------------------
Confidence 999999875 333321 0 0
Q ss_pred CCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEc--CC-ceeeeccEEEEccCCCCCcch
Q 014821 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD--GQ-TTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~--~g-~~~~~~D~Vi~atG~~~~~~~ 380 (418)
+...+.+.+++.+|+++.+. +..++.+ . +.++ ++ ++ +++|.||+|+|++|+...
T Consensus 209 -----------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 209 -----------------ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTDG 270 (463)
T ss_pred -----------------HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCCC
Confidence 00111234455678888776 6666533 2 3333 23 45 999999999999999541
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 271 l~------l~~~g~~~~~~G~i~vd~~~~Ts~~~VyA 301 (463)
T TIGR02053 271 LG------LEKAGVKLDERGGILVDETLRTSNPGIYA 301 (463)
T ss_pred CC------ccccCCEECCCCcEeECCCccCCCCCEEE
Confidence 10 1111111 345678888777789999985
No 29
>PRK14694 putative mercuric reductase; Provisional
Probab=99.91 E-value=2.6e-23 Score=209.34 Aligned_cols=283 Identities=17% Similarity=0.226 Sum_probs=173.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCC--CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVT--TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~--~~~~~~~ 77 (418)
.+||+|||||++|+++|..|++.|++++|||+. .+||+|.. +.|...+...+..++.. ..++..+.. ..-.+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 589999999999999999999999999999995 79999886 44443332222211111 111100000 1112344
Q ss_pred HHHHHHHHHHHhcC-------c--ccc-eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 78 QVLDYIQSYASHFD-------L--RKH-IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 78 ~~~~~l~~~~~~~~-------~--~~~-v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
.+..+.++....+. + ... -.+..++..++.+ .|.|++.++ ...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~------------------------~~~V~~~~g---~~~ 137 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER------------------------TLTVTLNDG---GEQ 137 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC------------------------EEEEEecCC---CeE
Confidence 55544444332210 0 001 2223456666433 378877653 235
Q ss_pred EEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 014821 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~ 227 (418)
++.||+||+|||+ .|..|+++ |.+.. ..+++..... ....+++++|||+|.+|+|+|..|...+.
T Consensus 138 ~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~-------l~~~~~~vvViG~G~~G~E~A~~l~~~g~ 202 (468)
T PRK14694 138 TVHFDRAFIGTGA---RPAEPPVP---GLAET--PYLTSTSALE-------LDHIPERLLVIGASVVALELAQAFARLGS 202 (468)
T ss_pred EEECCEEEEeCCC---CCCCCCCC---CCCCC--ceEcchhhhc-------hhcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 7999999999995 57777777 76542 2333322111 11346899999999999999999998876
Q ss_pred CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccC
Q 014821 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (418)
Q Consensus 228 ~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
. |+++.+.. +++... . .
T Consensus 203 ~---Vtlv~~~~--~l~~~~-------~----~----------------------------------------------- 219 (468)
T PRK14694 203 R---VTVLARSR--VLSQED-------P----A----------------------------------------------- 219 (468)
T ss_pred e---EEEEECCC--CCCCCC-------H----H-----------------------------------------------
Confidence 5 99998742 333221 0 0
Q ss_pred CCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEE-cCCceeeeccEEEEccCCCCCcchhcc
Q 014821 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVV-DGQTTPLKTDLVILATGFKGDVKLKNI 383 (418)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~-~~g~~~~~~D~Vi~atG~~~~~~~~~~ 383 (418)
+.+.+.+.+++.+|+++.+. +..+..+ .+.+ .++.+ +++|.||+|+|.+|+..+..
T Consensus 220 ------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~- 279 (468)
T PRK14694 220 ------------------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT-LRAEQLLVATGRTPNTENLN- 279 (468)
T ss_pred ------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE-EEeCEEEEccCCCCCcCCCC-
Confidence 01112334556678888775 6666532 2332 23446 99999999999999965432
Q ss_pred ccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 384 FLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+...++.+.++..+.++.||||.
T Consensus 280 -----l~~~g~~~~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 280 -----LESIGVETERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred -----chhcCcccCCCeEeeCCCcccCCCCEEE
Confidence 1112222345668888878778999985
No 30
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.91 E-value=1.5e-23 Score=221.82 Aligned_cols=267 Identities=18% Similarity=0.206 Sum_probs=175.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCCh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (418)
|.+++|||||+|++|+.+|..|+++ +++|+||++.+.+. |....+. . .+.. ...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------Y~r~~L~--~---~~~~-----------~~~ 58 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------YDRVHLS--S---YFSH-----------HTA 58 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------ccCCcch--H---hHcC-----------CCH
Confidence 6677999999999999999999864 46899999987442 1111110 0 0100 011
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.++........++.++ .++.++.|+.++... ..|.+.++ .++.||+|||
T Consensus 59 ~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~~------------------------~~V~~~~G-----~~i~yD~LVI 107 (847)
T PRK14989 59 EELSLVREGFYEKHGI--KVLVGERAITINRQE------------------------KVIHSSAG-----RTVFYDKLIM 107 (847)
T ss_pred HHccCCCHHHHHhCCC--EEEcCCEEEEEeCCC------------------------cEEEECCC-----cEEECCEEEE
Confidence 2222223344456687 788888999998765 45666655 5799999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEE
Q 014821 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (418)
Q Consensus 157 AtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~ 236 (418)
|||+ .|.+|+++ |.+.. .++....+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.
T Consensus 108 ATGs---~p~~p~ip---G~~~~--~v~~~rt~~d~~-~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe 175 (847)
T PRK14989 108 ATGS---YPWIPPIK---GSETQ--DCFVYRTIEDLN-AIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE---THVIE 175 (847)
T ss_pred CCCC---CcCCCCCC---CCCCC--CeEEECCHHHHH-HHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEe
Confidence 9995 57777777 65432 223211111111 0112234678999999999999999999998865 99999
Q ss_pred ecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccc
Q 014821 237 RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQ 316 (418)
Q Consensus 237 r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (418)
+.+.++..... . .
T Consensus 176 ~~~~ll~~~ld-------~----~-------------------------------------------------------- 188 (847)
T PRK14989 176 FAPMLMAEQLD-------Q----M-------------------------------------------------------- 188 (847)
T ss_pred ccccchhhhcC-------H----H--------------------------------------------------------
Confidence 87753221111 0 0
Q ss_pred ccccccccccCcchhhhhccCcEEEeccC-ceeEecC------cEEEcCCceeeeccEEEEccCCCCCcchhccccchhh
Q 014821 317 ELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED------GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~------~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
....+.+.+++.+|+++.+. +..+..+ .+.+++|++ +++|.||+|+|++|+..+++..+...
T Consensus 189 ---------~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~-i~~D~Vv~A~G~rPn~~L~~~~Gl~~- 257 (847)
T PRK14989 189 ---------GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIVFSTGIRPQDKLATQCGLAV- 257 (847)
T ss_pred ---------HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE-EEcCEEEECCCcccCchHHhhcCccC-
Confidence 01112335566678888886 6666532 367889998 99999999999999965443322221
Q ss_pred hhhhcCCCCCCccceeeeeeccCcccc
Q 014821 390 QDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..+.+.++..+.++.|+||.
T Consensus 258 ------~~~G~I~VD~~l~Ts~p~IYA 278 (847)
T PRK14989 258 ------APRGGIVINDSCQTSDPDIYA 278 (847)
T ss_pred ------CCCCcEEECCCCcCCCCCEEE
Confidence 345778898888888999985
No 31
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=4.3e-23 Score=207.57 Aligned_cols=279 Identities=17% Similarity=0.166 Sum_probs=164.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (418)
.++||+|||||++|+.+|..|++.|.+|+|+|+.+.+||.|.. ++|...+...+..++ ...+.+.. .....+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~--~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF--GEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc--CCCCcC
Confidence 3899999999999999999999999999999997789998766 666654432222111 11111110 011122
Q ss_pred hhHHHHHHHHH-----------HHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 76 HNQVLDYIQSY-----------ASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 76 ~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
...+.++.+.. .+..++ .+.. ..+..++. +...|...+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~-g~a~~~~~------------------------~~v~v~~~~---g 130 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVN-GLGKFTGG------------------------NTLEVTGED---G 130 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC------------------------CEEEEecCC---C
Confidence 23443333222 233344 3333 33433322 223343322 3
Q ss_pred ceeEEEeCEEEEeeccCCCCCC-CCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPN-IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~-~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
...++.||+||+|||+. |. +|.++ +.. ..++.+.+.... ...+++++|||+|.+|+|+|..|.
T Consensus 131 ~~~~~~~d~lViATGs~---p~~~p~~~---~~~---~~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~l~ 194 (471)
T PRK06467 131 KTTVIEFDNAIIAAGSR---PIQLPFIP---HDD---PRIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTVYH 194 (471)
T ss_pred ceEEEEcCEEEEeCCCC---CCCCCCCC---CCC---CcEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHHHH
Confidence 33579999999999954 54 34343 321 123333322221 134689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.+.+. ++|... . .+
T Consensus 195 ~~G~~---Vtlv~~~~~-il~~~d-------~----~~------------------------------------------ 217 (471)
T PRK06467 195 RLGSE---VDVVEMFDQ-VIPAAD-------K----DI------------------------------------------ 217 (471)
T ss_pred HcCCC---EEEEecCCC-CCCcCC-------H----HH------------------------------------------
Confidence 88765 999999875 334322 0 00
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcC--C--ceeeeccEEEEccCC
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDG--Q--TTPLKTDLVILATGF 374 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~--g--~~~~~~D~Vi~atG~ 374 (418)
...+.+.+++. ++++.+. +..++ +++ +.+++ | ++ +++|.||+|+|+
T Consensus 218 -----------------------~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~ 272 (471)
T PRK06467 218 -----------------------VKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEP-QRYDAVLVAVGR 272 (471)
T ss_pred -----------------------HHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceE-EEeCEEEEeecc
Confidence 00112233333 6666665 55554 233 33333 2 34 999999999999
Q ss_pred CCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+..+... ....+. +.++.+.++..+.++.|+||.
T Consensus 273 ~pn~~~l~~------~~~gl~~~~~G~I~Vd~~~~t~~p~VyA 309 (471)
T PRK06467 273 VPNGKLLDA------EKAGVEVDERGFIRVDKQCRTNVPHIFA 309 (471)
T ss_pred cccCCccCh------hhcCceECCCCcEeeCCCcccCCCCEEE
Confidence 999543211 111111 345678888777779999985
No 32
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.91 E-value=5.6e-23 Score=206.04 Aligned_cols=270 Identities=16% Similarity=0.175 Sum_probs=166.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|||||||++|+++|..|++.+ .+|+|||+++.++ |.. . ..++. ....+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~--~--------------~~~~~--~~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA--C--------------GLPYF--VGGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec--C--------------CCceE--eccccCCHHHhhc
Confidence 37999999999999999999875 4899999987442 100 0 00000 0111122233444
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+..+...++++ +++++++|++++... ..|.+.+..++....+.||+||+|||+
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtG~- 113 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAKN------------------------KTITVKNLKTGSIFNDTYDKLMIATGA- 113 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECCC------------------------CEEEEEECCCCCEEEecCCEEEECCCC-
Confidence 44455566787 788889999998765 245554422232333459999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhh--hhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAA--NLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|.++ |.+. ..+++...+.+.. .... ....+++|+|||+|.+|+|+|..|...+.. |+++.+.+
T Consensus 114 --~~~~~~i~---g~~~--~~v~~~~~~~~~~-~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 182 (444)
T PRK09564 114 --RPIIPPIK---NINL--ENVYTLKSMEDGL-ALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKN---VRIIQLED 182 (444)
T ss_pred --CCCCCCCC---CcCC--CCEEEECCHHHHH-HHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCc---EEEEeCCc
Confidence 46667666 5532 1244433322111 0001 123578999999999999999999887754 99998877
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
..+..... ..+
T Consensus 183 ~~l~~~~~-----------~~~---------------------------------------------------------- 193 (444)
T PRK09564 183 RILPDSFD-----------KEI---------------------------------------------------------- 193 (444)
T ss_pred ccCchhcC-----------HHH----------------------------------------------------------
Confidence 42211111 000
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecCc---EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG 395 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~ 395 (418)
.+.+.+.+++.+|+++.+. +.++..++ ....++.+ +++|.||+|+|+.++.++ +....+.
T Consensus 194 -------~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~d~vi~a~G~~p~~~~--------l~~~gl~ 257 (444)
T PRK09564 194 -------TDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-YEADVVIVATGVKPNTEF--------LEDTGLK 257 (444)
T ss_pred -------HHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCE-EEcCEEEECcCCCcCHHH--------HHhcCcc
Confidence 0111234455567777765 66665432 22234556 999999999999998543 3333332
Q ss_pred -CCCCCccceeeeeeccCcccc
Q 014821 396 -SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 396 -~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.++.+.++..+.++.||||.
T Consensus 258 ~~~~g~i~vd~~~~t~~~~IyA 279 (444)
T PRK09564 258 TLKNGAIIVDEYGETSIENIYA 279 (444)
T ss_pred ccCCCCEEECCCcccCCCCEEE
Confidence 345678888777778999985
No 33
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.91 E-value=7.7e-23 Score=201.72 Aligned_cols=266 Identities=14% Similarity=0.140 Sum_probs=165.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhH
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (418)
|..++|||||||+||+++|..|++.+. +|+|+++.+... +..+. .+. .+...+.. ...+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~----l~~---~~~~~~~~---~~~~~~~-- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPP----LSK---SMLLEDSP---QLQQVLP-- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCC----CCH---HHHCCCCc---cccccCC--
Confidence 788899999999999999999999876 799999975331 00000 000 00000000 0000000
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
.+...+.++ .+..++.|..++... ..|.+.++ .++.||+||+||
T Consensus 65 -----~~~~~~~~i--~~~~g~~V~~id~~~------------------------~~v~~~~g-----~~~~yd~LViAT 108 (396)
T PRK09754 65 -----ANWWQENNV--HLHSGVTIKTLGRDT------------------------RELVLTNG-----ESWHWDQLFIAT 108 (396)
T ss_pred -----HHHHHHCCC--EEEcCCEEEEEECCC------------------------CEEEECCC-----CEEEcCEEEEcc
Confidence 112234577 778888899998765 45666655 479999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
|+. |..++++ +.. ...++......+.. ........+++|+|||+|.+|+|+|..|...+.. |+++.+.
T Consensus 109 Gs~---~~~~p~~---~~~--~~~v~~~~~~~da~-~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~ 176 (396)
T PRK09754 109 GAA---ARPLPLL---DAL--GERCFTLRHAGDAA-RLREVLQPERSVVIVGAGTIGLELAASATQRRCK---VTVIELA 176 (396)
T ss_pred CCC---CCCCCCC---CcC--CCCEEecCCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Confidence 965 5555444 321 11232211111100 0112334578999999999999999999988765 9999987
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+..+ ++.. + ..
T Consensus 177 ~~~l-~~~~------~----~~---------------------------------------------------------- 187 (396)
T PRK09754 177 ATVM-GRNA------P----PP---------------------------------------------------------- 187 (396)
T ss_pred Ccch-hhhc------C----HH----------------------------------------------------------
Confidence 7532 2110 0 00
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecC---cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhc
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~ 394 (418)
..+.+.+.+++.+|+++.+. +..++.+ .+.+.+|++ +++|.||+|+|..++..+.+. ..+
T Consensus 188 -------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~-i~aD~Vv~a~G~~pn~~l~~~--------~gl 251 (396)
T PRK09754 188 -------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGET-LQADVVIYGIGISANDQLARE--------ANL 251 (396)
T ss_pred -------HHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCE-EECCEEEECCCCChhhHHHHh--------cCC
Confidence 00112234455678888775 6676643 256788988 999999999999999544332 222
Q ss_pred CCCCCCccceeeeeeccCcccc
Q 014821 395 GSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. ++++.++..+.++.||||.
T Consensus 252 ~~-~~gi~vd~~~~ts~~~IyA 272 (396)
T PRK09754 252 DT-ANGIVIDEACRTCDPAIFA 272 (396)
T ss_pred Cc-CCCEEECCCCccCCCCEEE
Confidence 12 3557787777778999985
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=99.91 E-value=7.1e-23 Score=211.06 Aligned_cols=281 Identities=15% Similarity=0.212 Sum_probs=169.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCC--CCCCCh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVT--TDFPDH 76 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~--~~~~~~ 76 (418)
.++||+|||||++|+++|..|+++|++|+|||++ .+||.|.+ +.|...+..+....... ..++..+.. ......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999996 89999977 56655543333221111 111100100 111223
Q ss_pred hHHHHHHHHHHHh------------c-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCC
Q 014821 77 NQVLDYIQSYASH------------F-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN 143 (418)
Q Consensus 77 ~~~~~~l~~~~~~------------~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (418)
..+.++.+....+ + ++ .+ +..++..++. +.+.|...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~~~~~~~------------------------~~~~v~~~~--- 225 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAI--TV-LHGEARFKDD------------------------QTLIVRLND--- 225 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCe--EE-EEEEEEEecC------------------------CEEEEEeCC---
Confidence 3444333322221 1 22 12 2234443332 235555433
Q ss_pred CceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 144 HSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 144 ~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
+...++.||+||+|||+ .|.+|+++ |.+.. ..+++.... .....+++++|||+|.+|+|+|..|.
T Consensus 226 g~~~~~~~d~lviAtGs---~p~~p~i~---g~~~~--~~~~~~~~~-------~~~~~~~~vvViGgG~ig~E~A~~l~ 290 (561)
T PRK13748 226 GGERVVAFDRCLIATGA---SPAVPPIP---GLKET--PYWTSTEAL-------VSDTIPERLAVIGSSVVALELAQAFA 290 (561)
T ss_pred CceEEEEcCEEEEcCCC---CCCCCCCC---CCCcc--ceEccHHHh-------hcccCCCeEEEECCCHHHHHHHHHHH
Confidence 22357999999999995 57778777 65432 122211111 11234689999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.|+. +++... . .
T Consensus 291 ~~g~~---Vtli~~~~--~l~~~d-------~----~------------------------------------------- 311 (561)
T PRK13748 291 RLGSK---VTILARST--LFFRED-------P----A------------------------------------------- 311 (561)
T ss_pred HcCCE---EEEEecCc--cccccC-------H----H-------------------------------------------
Confidence 88765 99999853 233221 0 0
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--CcEEEc-CCceeeeccEEEEccCCCCCcc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGIVVD-GQTTPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v~~~-~g~~~~~~D~Vi~atG~~~~~~ 379 (418)
+...+.+.+++.+|+++.+. +..++. +.+.+. ++.+ +++|.||+|+|++|+..
T Consensus 312 ----------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 312 ----------------------IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATGRAPNTR 368 (561)
T ss_pred ----------------------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe-EEeCEEEEccCCCcCCC
Confidence 01112234556678888775 666643 233322 2335 99999999999999954
Q ss_pred hhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 380 LKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 380 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+.. +....+. +.++.+.++..+.++.||||.
T Consensus 369 ~l~------l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA 400 (561)
T PRK13748 369 SLA------LDAAGVTVNAQGAIVIDQGMRTSVPHIYA 400 (561)
T ss_pred CcC------chhcCceECCCCCEeECCCcccCCCCEEE
Confidence 321 1111221 345678888888889999995
No 35
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.90 E-value=4.1e-23 Score=207.81 Aligned_cols=283 Identities=17% Similarity=0.207 Sum_probs=168.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccc----cCCCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFP 74 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~ 74 (418)
|+++||+|||||++|+++|..|++.|.+++|||+ ..+||.|.. +.|...+......++ +..+.+.. .....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~--~~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA--DGPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc--CCCcc
Confidence 8889999999999999999999999999999999 689999876 445433322222111 11121111 11334
Q ss_pred ChhHHHHHHHHHHHhcCcccce-E---eeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHI-K---FNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v-~---~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
+..++.++++...+++.. .+ . ....+.-+.... . + .+.+.+.+ ++ .++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~----~-------------~--~~~~~v~v-~~-----~~~~ 130 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTA----R-------------F--VDPNTVEV-NG-----ERIE 130 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEE----E-------------E--ccCCEEEE-Cc-----EEEE
Confidence 566777777766654422 11 0 001111111100 0 0 01123444 33 5799
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLE 229 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~ 229 (418)
||+||+|||+. .|.+| |.+...+ .++++..... ....+++++|||+|.+|+|+|..|...+..
T Consensus 131 ~d~lIiATGs~--~p~ip------g~~~~~~~~~~~~~~~~~-------~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~- 194 (460)
T PRK06292 131 AKNIVIATGSR--VPPIP------GVWLILGDRLLTSDDAFE-------LDKLPKSLAVIGGGVIGLELGQALSRLGVK- 194 (460)
T ss_pred eCEEEEeCCCC--CCCCC------CCcccCCCcEECchHHhC-------ccccCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 99999999954 35554 4322111 2333222211 124578999999999999999999988765
Q ss_pred CCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 014821 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMV 309 (418)
Q Consensus 230 ~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (418)
|+++.|.+. +++... . .+
T Consensus 195 --Vtli~~~~~-~l~~~d-------~----~~------------------------------------------------ 212 (460)
T PRK06292 195 --VTVFERGDR-ILPLED-------P----EV------------------------------------------------ 212 (460)
T ss_pred --EEEEecCCC-cCcchh-------H----HH------------------------------------------------
Confidence 999998875 333211 0 00
Q ss_pred CCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC---cEEE--cCC--ceeeeccEEEEccCCCCCcchh
Q 014821 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GIVV--DGQ--TTPLKTDLVILATGFKGDVKLK 381 (418)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v~~--~~g--~~~~~~D~Vi~atG~~~~~~~~ 381 (418)
.+.+.+.+++. |+++.+. +..++.+ .+.+ .++ ++ +++|.||+|+|.+|+.+.+
T Consensus 213 -----------------~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l 273 (460)
T PRK06292 213 -----------------SKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTET-IEADYVLVATGRRPNTDGL 273 (460)
T ss_pred -----------------HHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEE-EEeCEEEEccCCccCCCCC
Confidence 01112344555 7777665 6666532 3443 233 45 9999999999999995422
Q ss_pred ccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 382 NIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 382 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
. +....+. +.++.+.++..+.++.||||.
T Consensus 274 ~------l~~~g~~~~~~g~i~vd~~~~ts~~~IyA 303 (460)
T PRK06292 274 G------LENTGIELDERGRPVVDEHTQTSVPGIYA 303 (460)
T ss_pred C------cHhhCCEecCCCcEeECCCcccCCCCEEE
Confidence 1 1111111 345678888888778999985
No 36
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.90 E-value=7.3e-23 Score=206.04 Aligned_cols=288 Identities=16% Similarity=0.199 Sum_probs=164.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc-----CCCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-----SDYPWPDSVTTDF 73 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~ 73 (418)
|+++||+|||||++|+++|..|++.|.+|+|||+ ..+||.+.. +.|+..+......+.. ..+.... ...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~---~~~ 77 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG---EVT 77 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc---Ccc
Confidence 4578999999999999999999999999999999 478998776 5554333222111111 0111110 111
Q ss_pred CChhHHHHHHHHHHHhc--CcccceEe-eeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 74 PDHNQVLDYIQSYASHF--DLRKHIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~--~~~~~v~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.+...+..+.+...++. +. ...+ ...|..++... .+...+.+.|...+ +...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~~-----------------~~~~~~~v~v~~~~---g~~~~~~ 135 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGV--HFLMKKNKITEIHGYG-----------------TFTDANTLEVDLND---GGTETVT 135 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEE-----------------EEcCCCEEEEEecC---CCeeEEE
Confidence 22233333332222211 11 1111 11333333211 00001223343322 2335799
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~ 230 (418)
||+||+|||+. |..| | |.+. .+.++....... ....+++|+|||+|.+|+|+|..|...+..
T Consensus 136 ~d~lViATGs~---p~~~--p---g~~~-~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~-- 197 (466)
T PRK07818 136 FDNAIIATGSS---TRLL--P---GTSL-SENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGVD-- 197 (466)
T ss_pred cCEEEEeCCCC---CCCC--C---CCCC-CCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCCe--
Confidence 99999999965 5443 3 4321 122333221111 123468999999999999999999988765
Q ss_pred CeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 014821 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (418)
Q Consensus 231 ~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (418)
|+++.+.++ ++|... . .
T Consensus 198 -Vtlv~~~~~-~l~~~d-------~----~-------------------------------------------------- 214 (466)
T PRK07818 198 -VTIVEFLDR-ALPNED-------A----E-------------------------------------------------- 214 (466)
T ss_pred -EEEEecCCC-cCCccC-------H----H--------------------------------------------------
Confidence 999998775 334322 0 0
Q ss_pred CcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc----EEEc--CCc-eeeeccEEEEccCCCCCcchhc
Q 014821 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVD--GQT-TPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~----v~~~--~g~-~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
+.+.+.+.+++.+|+++.+. +..++.++ +.+. +|+ ..+++|.||+|+|++|+.....
T Consensus 215 ---------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~ 279 (466)
T PRK07818 215 ---------------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYG 279 (466)
T ss_pred ---------------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCC
Confidence 01112335566678888876 77775432 3443 564 2399999999999999954221
Q ss_pred cccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+. +.++.+.++..+.++.||||.
T Consensus 280 ------l~~~g~~~~~~g~i~vd~~~~Ts~p~IyA 308 (466)
T PRK07818 280 ------LEKTGVALTDRGAIAIDDYMRTNVPHIYA 308 (466)
T ss_pred ------chhcCcEECCCCcEeeCCCcccCCCCEEE
Confidence 1111121 345668888878788999985
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.90 E-value=8e-23 Score=206.07 Aligned_cols=291 Identities=14% Similarity=0.143 Sum_probs=172.4
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCC-CCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDS-VTTD 72 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~-~~~~ 72 (418)
|+ .+||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.. +.|...+...+..+... .+.+... ....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 65 799999999999999999999999999999995 79999877 56665544333322211 1111100 0011
Q ss_pred CC----ChhHHHHHHH----HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 73 FP----DHNQVLDYIQ----SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 73 ~~----~~~~~~~~l~----~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
|. ..+++.+++. ...++.++ ++.. ..+..++.+..++ ..+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~~-----------------~~~~~~v~~~~g--- 136 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFSP-----------------MPGTVSVETETG--- 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCcC-----------------CceEEEEEeCCC---
Confidence 11 1122222232 23334455 4444 5666666541000 012355554332
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||+|||+. |..++ +.+.....++++.+.... ...+++|+|||+|.+|+|+|..|..
T Consensus 137 ~~~~~~~d~lViATGs~---p~~~p-----~~~~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~l~~ 201 (472)
T PRK05976 137 ENEMIIPENLLIATGSR---PVELP-----GLPFDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASMLAD 201 (472)
T ss_pred ceEEEEcCEEEEeCCCC---CCCCC-----CCCCCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHH
Confidence 23579999999999964 54332 221111123433322221 1236899999999999999999998
Q ss_pred hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhc
Q 014821 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+.. |+++.|.+. ++|... . .
T Consensus 202 ~g~~---Vtli~~~~~-il~~~~-------~----~-------------------------------------------- 222 (472)
T PRK05976 202 FGVE---VTVVEAADR-ILPTED-------A----E-------------------------------------------- 222 (472)
T ss_pred cCCe---EEEEEecCc-cCCcCC-------H----H--------------------------------------------
Confidence 8765 999999875 344322 0 0
Q ss_pred ccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe---cCcE---EEcCCc-eeeeccEEEEccCCCC
Q 014821 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC---EDGI---VVDGQT-TPLKTDLVILATGFKG 376 (418)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~---~~~v---~~~~g~-~~~~~D~Vi~atG~~~ 376 (418)
+...+.+.+++.+|+++.+. +..++ ++++ .+.+|+ +.+++|.||+|+|.+|
T Consensus 223 ---------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 223 ---------------------LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred ---------------------HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 01112234556678888876 66665 3433 234664 2389999999999999
Q ss_pred CcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 377 DVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+..... +....+...++.+.++..+.++.|+||.
T Consensus 282 ~~~~l~------l~~~~~~~~~g~i~Vd~~l~ts~~~IyA 315 (472)
T PRK05976 282 NTEGIG------LENTDIDVEGGFIQIDDFCQTKERHIYA 315 (472)
T ss_pred CCCCCC------chhcCceecCCEEEECCCcccCCCCEEE
Confidence 854221 1111121235667777777777889885
No 38
>PRK14727 putative mercuric reductase; Provisional
Probab=99.90 E-value=9.7e-23 Score=205.55 Aligned_cols=280 Identities=18% Similarity=0.210 Sum_probs=166.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC-CCCCCCCCCCCCC--Chh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVTTDFP--DHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~ 77 (418)
++||+|||+|++|+++|..|+++|.+++++|+.+.+||.|.. +.|...+..++..++.. ..++. +.....+ +..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~-g~~~~~~~~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFD-GVEAVAPSIDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcccc-CcccCCCccCHH
Confidence 589999999999999999999999999999998789999988 56665554443332211 11111 0000111 222
Q ss_pred HHHHHHHHHHHhc-------------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 78 QVLDYIQSYASHF-------------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 78 ~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
.+..+......+. ++ .+.. ..+.-++ .+.+.|...++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~-G~a~f~~------------------------~~~v~v~~~~g--- 144 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPAL--TLLK-GYARFKD------------------------GNTLVVRLHDG--- 144 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCe--EEEE-EEEEEec------------------------CCEEEEEeCCC---
Confidence 3322222221111 11 1111 2222221 23355554332
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
...++.||+||||||+ .|..|+++ |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..|..
T Consensus 145 ~~~~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~ 209 (479)
T PRK14727 145 GERVLAADRCLIATGS---TPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYAR 209 (479)
T ss_pred ceEEEEeCEEEEecCC---CCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHH
Confidence 3357999999999995 57778777 65432 1222111111 12346899999999999999999988
Q ss_pred hcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhc
Q 014821 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (418)
Q Consensus 225 ~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
.+.. |+++.+.. +++... . .
T Consensus 210 ~G~~---Vtlv~~~~--~l~~~d-------~----~-------------------------------------------- 229 (479)
T PRK14727 210 LGSR---VTILARST--LLFRED-------P----L-------------------------------------------- 229 (479)
T ss_pred cCCE---EEEEEcCC--CCCcch-------H----H--------------------------------------------
Confidence 8765 99998753 333221 0 0
Q ss_pred ccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCcEEEc-CCceeeeccEEEEccCCCCCcch
Q 014821 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGIVVD-GQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~v~~~-~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
+.+.+.+.+++.+|+++.+. +..++ ++++.+. ++.+ +++|.||+|+|+.|+..+
T Consensus 230 ---------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 230 ---------------------LGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGRHANTHD 287 (479)
T ss_pred ---------------------HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCCCCCccC
Confidence 00112234455667777765 65554 2333332 2335 899999999999999542
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+. +....+. +.++.+.++..+.++.|+||.
T Consensus 288 l~------l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA 318 (479)
T PRK14727 288 LN------LEAVGVTTDTSGAIVVNPAMETSAPDIYA 318 (479)
T ss_pred CC------chhhCceecCCCCEEECCCeecCCCCEEE
Confidence 21 1111121 345778888888889999995
No 39
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.90 E-value=3.6e-23 Score=209.14 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=168.5
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccccc-----CCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF-----SDYP 64 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~~~-----~~~~ 64 (418)
|+ .+||+|||||++|+.+|..|+++|.+|+|+|+.. .+||.+.. ++|...+...+..+.. ..+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44 5899999999999999999999999999999631 37887655 6665433322221111 0111
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC
Q 014821 65 WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (418)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (418)
+.. .. -.+..++.++++..+++++. .+....++..|+... +.. .+ .+.++|.+.+. +
T Consensus 82 ~~~--~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~--g~a------------~~--~~~~~v~v~~~--~ 138 (499)
T PTZ00052 82 WKT--SS-SFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYIN--GLA------------KL--KDEHTVSYGDN--S 138 (499)
T ss_pred CCC--CC-CcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEE--EEE------------EE--ccCCEEEEeeC--C
Confidence 111 01 23456777777777666543 232222222221110 000 00 01234555432 2
Q ss_pred ceeEEEeCEEEEeeccCCCCCCCCC-CCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHh
Q 014821 145 STEVHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECT 223 (418)
Q Consensus 145 ~~~~i~~d~vIlAtG~~~~~p~~p~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~ 223 (418)
....+.||+||||||+. |..|. ++ |.+.+ .+.+..... ....+++++|||+|.+|+|+|..|.
T Consensus 139 ~~~~i~~d~lIIATGs~---p~~p~~i~---G~~~~---~~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~l~ 202 (499)
T PTZ00052 139 QEETITAKYILIATGGR---PSIPEDVP---GAKEY---SITSDDIFS-------LSKDPGKTLIVGASYIGLETAGFLN 202 (499)
T ss_pred CceEEECCEEEEecCCC---CCCCCCCC---Cccce---eecHHHHhh-------hhcCCCeEEEECCCHHHHHHHHHHH
Confidence 23579999999999954 66663 66 65432 222222211 1234679999999999999999999
Q ss_pred hhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhh
Q 014821 224 TANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRL 303 (418)
Q Consensus 224 ~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (418)
..+.. |+++.++. +++... . .
T Consensus 203 ~~G~~---Vtli~~~~--~l~~~d-------~----~------------------------------------------- 223 (499)
T PTZ00052 203 ELGFD---VTVAVRSI--PLRGFD-------R----Q------------------------------------------- 223 (499)
T ss_pred HcCCc---EEEEEcCc--ccccCC-------H----H-------------------------------------------
Confidence 88765 99998742 233222 0 0
Q ss_pred cccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 304 AKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+.+.+++.+|+++.+. +..+.. + .+.+.+|++ +++|.||+|+|++|+.
T Consensus 224 ----------------------~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 ----------------------CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTT-ELFDTVLYATGRKPDI 280 (499)
T ss_pred ----------------------HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCE-EEcCEEEEeeCCCCCc
Confidence 01112334555668888775 555542 2 256678888 9999999999999996
Q ss_pred chhc--cccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 379 KLKN--IFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+++. .++..+ +.++.+.+... .++.|+||.
T Consensus 281 ~~l~l~~~g~~~-------~~~G~ii~~~~-~Ts~p~IyA 312 (499)
T PTZ00052 281 KGLNLNAIGVHV-------NKSNKIIAPND-CTNIPNIFA 312 (499)
T ss_pred cccCchhcCcEE-------CCCCCEeeCCC-cCCCCCEEE
Confidence 5432 111111 23344333333 677888884
No 40
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.90 E-value=1.2e-22 Score=204.29 Aligned_cols=281 Identities=16% Similarity=0.184 Sum_probs=162.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc------CCCCCCCCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF------SDYPWPDSVTTD 72 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~------~~~~~~~~~~~~ 72 (418)
|+++||+||||||+|+++|..++++|.+|+|+|+++.+||.+.. +.|+..+......++. ..+.... ..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~--~~- 77 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV--KP- 77 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc--cC-
Confidence 78899999999999999999999999999999987789998765 6666554433332211 1111100 00
Q ss_pred CCChhHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 73 FPDHNQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 73 ~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
-.....+..+... ..+..++ .+.. ..+ .+. . .....|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~a-~~~--~---------------------~~~v~v~~~~- 129 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIK-GWG-RLD--G---------------------VGKVVVKAED- 129 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEE-EEc--c---------------------CCEEEEEcCC-
Confidence 0111222222111 1122223 2222 121 111 1 1223443322
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
+...++.||+||||||+. |. .++ |.+.....++++..... ....+++|+|||+|.+|+|+|..
T Consensus 130 --g~~~~~~~d~lVIATGs~---p~--~ip---g~~~~~~~~~~~~~~~~-------~~~~~~~vvIIGgG~ig~E~A~~ 192 (466)
T PRK06115 130 --GSETQLEAKDIVIATGSE---PT--PLP---GVTIDNQRIIDSTGALS-------LPEVPKHLVVIGAGVIGLELGSV 192 (466)
T ss_pred --CceEEEEeCEEEEeCCCC---CC--CCC---CCCCCCCeEECHHHHhC-------CccCCCeEEEECCCHHHHHHHHH
Confidence 233579999999999965 42 233 43211112343332222 12347899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
+...+.. |+++.+.++ ++|... . .
T Consensus 193 l~~~G~~---Vtlie~~~~-il~~~d-------~----~----------------------------------------- 216 (466)
T PRK06115 193 WRRLGAQ---VTVVEYLDR-ICPGTD-------T----E----------------------------------------- 216 (466)
T ss_pred HHHcCCe---EEEEeCCCC-CCCCCC-------H----H-----------------------------------------
Confidence 9888765 999998774 333221 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--CcE--EEc---CC--ceeeeccEEEEc
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGI--VVD---GQ--TTPLKTDLVILA 371 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~v--~~~---~g--~~~~~~D~Vi~a 371 (418)
+.+.+.+.+++.+|+++.+. +..++. +++ .+. +| ++ +++|.||+|
T Consensus 217 ------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a 271 (466)
T PRK06115 217 ------------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLVA 271 (466)
T ss_pred ------------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEEc
Confidence 00112234556678888875 667753 233 332 23 45 999999999
Q ss_pred cCCCCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 372 TGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 372 tG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|++|+.+.+. +....+......+.++..+.++.|+||.
T Consensus 272 ~G~~pn~~~l~------~~~~g~~~~~~G~~vd~~~~Ts~~~IyA 310 (466)
T PRK06115 272 IGRRPYTQGLG------LETVGLETDKRGMLANDHHRTSVPGVWV 310 (466)
T ss_pred cCCccccccCC------cccccceeCCCCEEECCCeecCCCCEEE
Confidence 99999954221 1111111222235566667889999985
No 41
>PLN02546 glutathione reductase
Probab=99.90 E-value=3.9e-23 Score=209.95 Aligned_cols=274 Identities=17% Similarity=0.211 Sum_probs=167.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC---------CCCCccccc--cCCcceecCCcccccc----CCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR---------SDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPD 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~---------~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~ 67 (418)
.+||+|||+|++|+.+|..+++.|.+|.|+|+. ..+||++.. +.|...+...+...+. ..+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999962 457887776 6666665443332221 1111111
Q ss_pred CCCCCCCChhHHH-----------HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 68 SVTTDFPDHNQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 68 ~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
. ...-.+...+. .++....++.++ +++. .++..++.+ +|
T Consensus 159 ~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~~--------------------------~V 208 (558)
T PLN02546 159 E-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDPH--------------------------TV 208 (558)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccCC--------------------------EE
Confidence 0 00011222222 233333333444 3332 344444322 24
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHH
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~ 216 (418)
.+ ++ ..+.||+||||||+ .|..|+++ |.+. ++++..... ....+++|+|||+|.+|+
T Consensus 209 ~v-~G-----~~~~~D~LVIATGs---~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGv 265 (558)
T PLN02546 209 DV-DG-----KLYTARNILIAVGG---RPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIAL 265 (558)
T ss_pred EE-CC-----EEEECCEEEEeCCC---CCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHH
Confidence 44 23 47999999999994 57777777 6542 222211111 223578999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHH
Q 014821 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (418)
Q Consensus 217 e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (418)
|+|..|...+.. |+++.+.+. +++... ..+
T Consensus 266 E~A~~L~~~g~~---Vtlv~~~~~-il~~~d-----------~~~----------------------------------- 295 (558)
T PLN02546 266 EFAGIFNGLKSD---VHVFIRQKK-VLRGFD-----------EEV----------------------------------- 295 (558)
T ss_pred HHHHHHHhcCCe---EEEEEeccc-cccccC-----------HHH-----------------------------------
Confidence 999999887765 999998774 333221 000
Q ss_pred HHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec---CcEE--EcCCceeeeccEEEE
Q 014821 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE---DGIV--VDGQTTPLKTDLVIL 370 (418)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~---~~v~--~~~g~~~~~~D~Vi~ 370 (418)
.+.+.+.+++.+|+++.+. +..+.. +.+. +++++. ..+|.||+
T Consensus 296 ------------------------------~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~-~~~D~Viv 344 (558)
T PLN02546 296 ------------------------------RDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTV-EGFSHVMF 344 (558)
T ss_pred ------------------------------HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEE-EecCEEEE
Confidence 0111234556678888776 666642 2233 344444 56899999
Q ss_pred ccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 371 ATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 371 atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+|++++..++. ++...+. +.++.+.++..+.+++||||.
T Consensus 345 a~G~~Pnt~~L~------le~~gl~~d~~G~I~VD~~l~Ts~p~IYA 385 (558)
T PLN02546 345 ATGRKPNTKNLG------LEEVGVKMDKNGAIEVDEYSRTSVPSIWA 385 (558)
T ss_pred eeccccCCCcCC------hhhcCCcCCCCCcEeECCCceeCCCCEEE
Confidence 999999954211 2222222 345678888878889999995
No 42
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.90 E-value=1.4e-22 Score=203.63 Aligned_cols=285 Identities=15% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeC--------CCCCccccc--cCCcceecCCccccccC----CCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEAR--------SDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWP 66 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~--------~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~ 66 (418)
+.+||+|||||++|..+|..+++. |.+|.|||+. ..+||.+.. +.|...+...+..++.. .+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 469999999999999999999996 8999999974 468998777 77776665544332211 11111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhc------------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 67 DSVTTDFPDHNQVLDYIQSYASHF------------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
......-.....+.++.+...++. ++ ++.. .+...++ ..
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv--~~i~-G~a~f~~--------------------------~~ 132 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGL--TFFL-GWGALED--------------------------KN 132 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCe--EEEE-EEEEEcc--------------------------CC
Confidence 000010112233333333222221 22 1221 2222211 13
Q ss_pred EEEEecCC---CCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcC
Q 014821 135 TVAVEDAK---NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGL 211 (418)
Q Consensus 135 ~v~~~~~~---~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 211 (418)
+|.+.... ++..+++.||+||+|||+ .|..|+++ |.+. ++.+.+... ....+++++|||+
T Consensus 133 ~v~V~~~~~~~~~~~~~~~~d~lIIATGs---~p~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~vvIIGg 195 (486)
T TIGR01423 133 VVLVRESADPKSAVKERLQAEHILLATGS---WPQMLGIP---GIEH----CISSNEAFY-------LDEPPRRVLTVGG 195 (486)
T ss_pred EEEEeeccCCCCCcceEEECCEEEEecCC---CCCCCCCC---Chhh----eechhhhhc-------cccCCCeEEEECC
Confidence 45554321 112358999999999995 57777777 6542 222221111 1134689999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHH
Q 014821 212 QKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISK 291 (418)
Q Consensus 212 G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (418)
|.+|+|+|..+........+|+++.+.+. ++|... . .
T Consensus 196 G~iG~E~A~~~~~l~~~G~~Vtli~~~~~-il~~~d-------~----~------------------------------- 232 (486)
T TIGR01423 196 GFISVEFAGIFNAYKPRGGKVTLCYRNNM-ILRGFD-------S----T------------------------------- 232 (486)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEecCCc-cccccC-------H----H-------------------------------
Confidence 99999999877654111135999998875 334322 0 0
Q ss_pred HHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--C---cEEEcCCceeeec
Q 014821 292 FVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D---GIVVDGQTTPLKT 365 (418)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~---~v~~~~g~~~~~~ 365 (418)
+.+.+.+.+++.+|+++.+. +.+++. + .+.+++|++ +++
T Consensus 233 ----------------------------------~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~~ 277 (486)
T TIGR01423 233 ----------------------------------LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKT-LDV 277 (486)
T ss_pred ----------------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCE-EEc
Confidence 11112334556678888876 666653 2 366678887 999
Q ss_pred cEEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 366 DLVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 366 D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|.||+|+|++|+..+.. +....+. +.++.+.++..+.++.||||.
T Consensus 278 D~vl~a~G~~Pn~~~l~------l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA 323 (486)
T TIGR01423 278 DVVMMAIGRVPRTQTLQ------LDKVGVELTKKGAIQVDEFSRTNVPNIYA 323 (486)
T ss_pred CEEEEeeCCCcCcccCC------chhhCceECCCCCEecCCCCcCCCCCEEE
Confidence 99999999999954332 1111121 345678888877788999985
No 43
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.90 E-value=3e-22 Score=201.35 Aligned_cols=284 Identities=16% Similarity=0.149 Sum_probs=171.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCC-CCCCCCCh
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDS-VTTDFPDH 76 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~-~~~~~~~~ 76 (418)
+||+|||+|++|+.+|..|+++|.+|+++|+. .+||.+.. +.|...+...+..++. ..+.+... ......+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 69999999999999999999999999999995 58988766 5555443322211110 01111100 00001111
Q ss_pred hHHHH-----------HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLD-----------YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+.+ .++..++++++ +++. .++..++... ..+...|...++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~~~~~~--------------------~~~~v~V~~~~g---~ 134 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIA-GRGRLIDPGL--------------------GPHRVKVTTADG---G 134 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEeeccc--------------------CCCEEEEEeCCC---c
Confidence 22222 23333444565 4444 4555543111 012344443332 2
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.+++.||+||+|||+. |..|+.+ +.. ...+++...+... ...+++++|||+|.+|+|+|..|...
T Consensus 135 ~~~~~~d~lViATGs~---p~~~p~~---~~~--~~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~ 199 (466)
T PRK07845 135 EETLDADVVLIATGAS---PRILPTA---EPD--GERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTEL 199 (466)
T ss_pred eEEEecCEEEEcCCCC---CCCCCCC---CCC--CceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHc
Confidence 3479999999999954 6555433 221 1124443333221 13468999999999999999999888
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.+.+. +++... . .
T Consensus 200 g~~---Vtli~~~~~-~l~~~d-------~----~--------------------------------------------- 219 (466)
T PRK07845 200 GVK---VTLVSSRDR-VLPGED-------A----D--------------------------------------------- 219 (466)
T ss_pred CCe---EEEEEcCCc-CCCCCC-------H----H---------------------------------------------
Confidence 765 999998775 333322 0 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
..+.+.+.+++.+|+++.+. +..++ +++ +.+.+|++ +++|.||+|+|++|+...
T Consensus 220 --------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~-l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 220 --------------------AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRT-VEGSHALMAVGSVPNTAG 278 (466)
T ss_pred --------------------HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcE-EEecEEEEeecCCcCCCC
Confidence 00112235566678888775 66664 333 45568887 999999999999999553
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 279 l~------l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA 309 (466)
T PRK07845 279 LG------LEEAGVELTPSGHITVDRVSRTSVPGIYA 309 (466)
T ss_pred CC------chhhCceECCCCcEeECCCcccCCCCEEE
Confidence 21 2222222 345678888877789999985
No 44
>PTZ00058 glutathione reductase; Provisional
Probab=99.89 E-value=3.9e-22 Score=202.51 Aligned_cols=295 Identities=12% Similarity=0.179 Sum_probs=169.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFP-- 74 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~-- 74 (418)
++||+|||||++|+.+|..+++.|.+|+|||+. .+||.+.. +.|...+...+..+... .+.........+.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~ 126 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL 126 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence 589999999999999999999999999999995 79998776 67766655444432211 1111100001111
Q ss_pred --ChhHHHHH----HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC-CCCceEEE------EecC
Q 014821 75 --DHNQVLDY----IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG-SRGKWTVA------VEDA 141 (418)
Q Consensus 75 --~~~~~~~~----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~------~~~~ 141 (418)
..+.+... ++...+..++ .+.. ....-+..+... -.+...-+++-.. .++..+|. ..++
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~gv--~~~~-G~a~f~~~~~v~-----v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 198 (561)
T PTZ00058 127 VERRDKYIRRLNDIYRQNLKKDNV--EYFE-GKGSLLSENQVL-----IKKVSQVDGEADESDDDEVTIVSAGVSQLDDG 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc--EEEE-EEEEEecCCEEE-----eeccccccccccccccccceeeeccceecCCC
Confidence 11122111 2222333444 3333 222111111000 0000000000000 01122231 1122
Q ss_pred CCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHH
Q 014821 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~ 221 (418)
.++.||+||+|||+ .|..|+++ |.+ .++.+..+.. ...+++|+|||+|.+|+|+|..
T Consensus 199 -----~~i~ad~lVIATGS---~P~~P~Ip---G~~----~v~ts~~~~~--------l~~pk~VvIIGgG~iGlE~A~~ 255 (561)
T PTZ00058 199 -----QVIEGKNILIAVGN---KPIFPDVK---GKE----FTISSDDFFK--------IKEAKRIGIAGSGYIAVELINV 255 (561)
T ss_pred -----cEEECCEEEEecCC---CCCCCCCC---Cce----eEEEHHHHhh--------ccCCCEEEEECCcHHHHHHHHH
Confidence 47999999999994 57778777 653 2343333222 1237899999999999999999
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014821 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (418)
Q Consensus 222 l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (418)
+...+.. |+++.+.++ +++... . .
T Consensus 256 l~~~G~~---Vtli~~~~~-il~~~d-------~----~----------------------------------------- 279 (561)
T PTZ00058 256 VNRLGAE---SYIFARGNR-LLRKFD-------E----T----------------------------------------- 279 (561)
T ss_pred HHHcCCc---EEEEEeccc-ccccCC-------H----H-----------------------------------------
Confidence 9988865 999999875 334322 0 0
Q ss_pred hhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC---cE--EEcCC-ceeeeccEEEEccCC
Q 014821 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GI--VVDGQ-TTPLKTDLVILATGF 374 (418)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~---~v--~~~~g-~~~~~~D~Vi~atG~ 374 (418)
+.+.+.+.+++.+|+++.+. +.+++++ ++ .+.++ ++ +++|.|++|+|+
T Consensus 280 ------------------------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~-i~aD~VlvA~Gr 334 (561)
T PTZ00058 280 ------------------------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKY-EHFDYVIYCVGR 334 (561)
T ss_pred ------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEE-EECCEEEECcCC
Confidence 01112234566678888776 6667542 23 33444 45 999999999999
Q ss_pred CCCcchhccccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 375 KGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+.+.+.. ........++.+.++..+.++.|+||.
T Consensus 335 ~Pn~~~L~l------~~~~~~~~~G~I~VDe~lqTs~p~IYA 370 (561)
T PTZ00058 335 SPNTEDLNL------KALNIKTPKGYIKVDDNQRTSVKHIYA 370 (561)
T ss_pred CCCccccCc------cccceecCCCeEEECcCCccCCCCEEE
Confidence 999543321 111111345778888888889999985
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.89 E-value=7.2e-22 Score=198.93 Aligned_cols=279 Identities=14% Similarity=0.148 Sum_probs=164.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~ 76 (418)
++||+|||||++|+++|..|++.|.+++|||+ +.+||.|.. ++|...+......++. ..+..... ....+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE--NVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC--CCcCCH
Confidence 48999999999999999999999999999999 889998876 5555443332222211 11111100 111222
Q ss_pred hHHHHHHHH-----------HHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQS-----------YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+..+.+. ..++.++ .+.. .++..++. +.+.+...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~~------------------------~~~~v~~~~g---- 126 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIK-GEAKFLDP------------------------GTVLVTGENG---- 126 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEccC------------------------CEEEEecCCC----
Confidence 333333222 2223343 2333 33333322 2244443222
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
..++.||+||+|||+. |..|+++ . +... ..+.++.+... ....+++|+|||+|.+|+|+|..|...
T Consensus 127 ~~~~~~d~lVlAtG~~---p~~~~~~-~-~~~~--~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~~~ 192 (461)
T TIGR01350 127 EETLTAKNIIIATGSR---PRSLPGP-F-DFDG--EVVITSTGALN-------LKEVPESLVIIGGGVIGIEFASIFASL 192 (461)
T ss_pred cEEEEeCEEEEcCCCC---CCCCCCC-C-CCCC--ceEEcchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 1579999999999954 6555442 0 1111 12322222211 123468999999999999999999988
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|.+. +.|... ..
T Consensus 193 g~~---Vtli~~~~~-~l~~~~-----------~~--------------------------------------------- 212 (461)
T TIGR01350 193 GSK---VTVIEMLDR-ILPGED-----------AE--------------------------------------------- 212 (461)
T ss_pred CCc---EEEEEcCCC-CCCCCC-----------HH---------------------------------------------
Confidence 765 999999875 333221 00
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCcE--EEcCC--ceeeeccEEEEccCCCCCc
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGI--VVDGQ--TTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~v--~~~~g--~~~~~~D~Vi~atG~~~~~ 378 (418)
+...+.+.+++.+|+++.+. +..++ ++++ .+.+| ++ +++|.||+|+|++|+.
T Consensus 213 --------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~-i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 213 --------------------VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETET-LTGEKVLVAVGRKPNT 271 (461)
T ss_pred --------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEE-EEeCEEEEecCCcccC
Confidence 00111234555678888875 66664 3344 34456 35 9999999999999985
Q ss_pred chhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 379 KLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 379 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
... .+....+. +.++.+.++..+.++.|+||.
T Consensus 272 ~~l------~~~~~gl~~~~~g~i~vd~~l~t~~~~Iya 304 (461)
T TIGR01350 272 EGL------GLENLGVELDERGRIVVDEYMRTNVPGIYA 304 (461)
T ss_pred CCC------CcHhhCceECCCCcEeeCCCcccCCCCEEE
Confidence 411 11221111 345667787777778899985
No 46
>PRK07846 mycothione reductase; Reviewed
Probab=99.89 E-value=4e-22 Score=199.38 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=166.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (418)
.+||+|||||++|..+|.. ..|.+|.|+|+ ..+||.+.+ +.|...+...+..++.. .+.+.. ...-.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA--ELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC--CCCcCCH
Confidence 4899999999999998866 45999999998 578998777 67766555444333211 111110 0111244
Q ss_pred hHHHHHHHHHHHhcCcc--c---------ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 77 NQVLDYIQSYASHFDLR--K---------HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~--~---------~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
..+.++.+...+++... . ++.. .++..++ ..+|.+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~a~~~~--------------------------~~~V~v~~g---- 124 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYR-GHARFIG--------------------------PKTLRTGDG---- 124 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEE-EEEEEec--------------------------CCEEEECCC----
Confidence 55555554444432110 0 1111 2222221 134666544
Q ss_pred eeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh
Q 014821 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~ 225 (418)
.++.||+||+|||+ .|..|+++ +.+.. .+..+.+... ....+++++|||+|.+|+|+|..|...
T Consensus 125 -~~~~~d~lViATGs---~p~~p~i~---g~~~~--~~~~~~~~~~-------l~~~~~~vvIIGgG~iG~E~A~~l~~~ 188 (451)
T PRK07846 125 -EEITADQVVIAAGS---RPVIPPVI---ADSGV--RYHTSDTIMR-------LPELPESLVIVGGGFIAAEFAHVFSAL 188 (451)
T ss_pred -CEEEeCEEEEcCCC---CCCCCCCC---CcCCc--cEEchHHHhh-------hhhcCCeEEEECCCHHHHHHHHHHHHc
Confidence 47999999999994 57778777 54321 1222212111 123468999999999999999999988
Q ss_pred cCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 226 ~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
+.. |+++.|++..+ +... . .+. +
T Consensus 189 G~~---Vtli~~~~~ll-~~~d-------~----~~~--------------------------------~---------- 211 (451)
T PRK07846 189 GVR---VTVVNRSGRLL-RHLD-------D----DIS--------------------------------E---------- 211 (451)
T ss_pred CCe---EEEEEcCCccc-cccC-------H----HHH--------------------------------H----------
Confidence 765 99999987532 3221 0 000 0
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.+.+.++ .+++++.+. +.+++.+ + +.+.+|++ +++|.||+|+|++|+.++
T Consensus 212 -----------------------~l~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 212 -----------------------RFTELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGST-VEADVLLVATGRVPNGDL 266 (451)
T ss_pred -----------------------HHHHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcE-eecCEEEEEECCccCccc
Confidence 0011222 347777665 6666532 2 55667888 999999999999999654
Q ss_pred hccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 381 KNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 381 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.. +....+. +.++.+.++..+.++.||||.
T Consensus 267 l~------~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 267 LD------AAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred cC------chhcCceECCCCcEeECCCcccCCCCEEE
Confidence 32 1111111 345778888888889999985
No 47
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.89 E-value=5.1e-22 Score=199.89 Aligned_cols=279 Identities=18% Similarity=0.228 Sum_probs=167.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--------CCCccccc--cCCcceecCCcccccc----CCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDS 68 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--------~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~ 68 (418)
.+||+|||+|++|+.+|..+++.|.+|.++|+.. .+||.|.. +.|...+...+..+.. ..+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 47888776 7776665443332221 11111100
Q ss_pred CCCCCCChhHHHHHHHHHHH-----------hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 69 VTTDFPDHNQVLDYIQSYAS-----------HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
.....+...+.++.+...+ ..++ ++ +......++. + +|.
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v--~~-i~G~a~f~~~------------------------~--~v~ 131 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKV--NY-ENAYAEFVDK------------------------H--RIK 131 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEcCC------------------------C--EEE
Confidence 0011223333333333222 2233 22 2233333322 2 244
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHH
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALD 217 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e 217 (418)
+... ++...++.||+||+|||+ .|..|+++ |.+.+ .+.+...... ...+++++|||+|.+|+|
T Consensus 132 v~~~-~g~~~~~~~d~lVIATGs---~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E 194 (484)
T TIGR01438 132 ATNK-KGKEKIYSAERFLIATGE---RPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALE 194 (484)
T ss_pred Eecc-CCCceEEEeCEEEEecCC---CCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHH
Confidence 4322 133357999999999995 57778777 75432 2332222221 124578999999999999
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 218 IAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 218 ~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
+|..|...+.. |+++.|. . +++... . .
T Consensus 195 ~A~~l~~~G~~---Vtli~~~-~-~l~~~d-------~----~------------------------------------- 221 (484)
T TIGR01438 195 CAGFLAGIGLD---VTVMVRS-I-LLRGFD-------Q----D------------------------------------- 221 (484)
T ss_pred HHHHHHHhCCc---EEEEEec-c-cccccC-------H----H-------------------------------------
Confidence 99999998765 9999974 2 334322 0 0
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCc---eeeeccEEE
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQT---TPLKTDLVI 369 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~---~~~~~D~Vi 369 (418)
+.+.+.+.+++.+|+++.+. +..++. +. +++++++ + +++|.||
T Consensus 222 ----------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~~D~vl 272 (484)
T TIGR01438 222 ----------------------------CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIE-EEYDTVL 272 (484)
T ss_pred ----------------------------HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceE-EEeCEEE
Confidence 01112234556678888775 555542 22 5555653 5 9999999
Q ss_pred EccCCCCCcchhccccchhhhhhhcC-C-CCCCccceeeeeeccCcccc
Q 014821 370 LATGFKGDVKLKNIFLSQTFQDYLAG-S-PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 370 ~atG~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 416 (418)
+|+|++|+..++. +....+. + .++.+.++..+.++.|+||.
T Consensus 273 ~a~G~~pn~~~l~------l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA 315 (484)
T TIGR01438 273 LAIGRDACTRKLN------LENVGVKINKKTGKIPADEEEQTNVPYIYA 315 (484)
T ss_pred EEecCCcCCCcCC------cccccceecCcCCeEecCCCcccCCCCEEE
Confidence 9999999954321 1111121 1 23667777777788999985
No 48
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.89 E-value=2.2e-22 Score=196.52 Aligned_cols=261 Identities=13% Similarity=0.147 Sum_probs=164.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+|||||||++|+.+|..|+++ +.+|+|||+++.. .|... .|. + .....+..++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~------~~~~~---~~~----~---------~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT------PYSGM---LPG----M---------IAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC------cccch---hhH----H---------HheeCCHHHhcc
Confidence 589999999999999999753 5799999997621 01100 000 0 001112234555
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+++..+++++ ++.. .+|++++... ..|.+.++ .++.||+||+|||+.
T Consensus 59 ~~~~~~~~~gv--~~~~-~~v~~id~~~------------------------~~V~~~~g-----~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 59 DLRRLARQAGA--RFVI-AEATGIDPDR------------------------RKVLLANR-----PPLSYDVLSLDVGST 106 (364)
T ss_pred cHHHHHHhcCC--EEEE-EEEEEEeccc------------------------CEEEECCC-----CcccccEEEEccCCC
Confidence 56666777787 5554 6899998766 35777665 479999999999954
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCC---Cchhhhhhh---hcCCCEEEEEcCCCCHHHHHHHHhhhcC---CCCCe
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYS---DMDYEAAAN---LVKGKRVTVVGLQKSALDIAMECTTANG---LENPC 232 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~v~VvG~G~sa~e~a~~l~~~~~---~~~~V 232 (418)
|..|.++ |..+. ++....+. ......... ...+++|+|||+|.+|+|+|..|..... ...+|
T Consensus 107 ---~~~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V 177 (364)
T TIGR03169 107 ---TPLSGVE---GAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQV 177 (364)
T ss_pred ---CCCCCCC---ccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceE
Confidence 6666666 53321 11111110 000000011 1246799999999999999999986421 11359
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++ +.+. +++... ..
T Consensus 178 ~li-~~~~-~l~~~~-----------~~---------------------------------------------------- 192 (364)
T TIGR03169 178 TLI-AGAS-LLPGFP-----------AK---------------------------------------------------- 192 (364)
T ss_pred EEE-eCCc-ccccCC-----------HH----------------------------------------------------
Confidence 998 4332 222211 00
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
+.+.+.+.+++.+|+++.+. +..++++.+.+++|++ +++|.||+|+|.+++. ++..
T Consensus 193 -------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~---------~l~~ 249 (364)
T TIGR03169 193 -------------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRT-LPADAILWATGARAPP---------WLAE 249 (364)
T ss_pred -------------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCE-EecCEEEEccCCChhh---------HHHH
Confidence 11122345667788999886 7788877899999998 9999999999999873 2222
Q ss_pred hhcC-CCCCCccceeee-eeccCcccc
Q 014821 392 YLAG-SPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 392 ~~~~-~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
..+. +..+.+.++..+ .++.||||.
T Consensus 250 ~gl~~~~~g~i~vd~~l~~~~~~~Iya 276 (364)
T TIGR03169 250 SGLPLDEDGFLRVDPTLQSLSHPHVFA 276 (364)
T ss_pred cCCCcCCCCeEEECCccccCCCCCEEE
Confidence 2221 346778888777 558999985
No 49
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=1.1e-21 Score=197.69 Aligned_cols=284 Identities=13% Similarity=0.156 Sum_probs=165.7
Q ss_pred CC-CccEEEEcCCHHHHHHHHHHHhCCCceEEEee------CCCCCccccc--cCCcceecCCccccc-c----CCCCCC
Q 014821 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA------RSDIGGAWIK--TVETTMLQTPKQLYQ-F----SDYPWP 66 (418)
Q Consensus 1 m~-~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~------~~~~gg~~~~--~~~~~~l~~~~~~~~-~----~~~~~~ 66 (418)
|. .+||+|||||++|+++|.++++.|.+++|+|+ ...+||.|.. +.|...+......+. + ..+...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 53 68999999999999999999999999999998 3568888876 445433322221111 0 111111
Q ss_pred CCCCCCCCChhHHHHH-----------HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 67 DSVTTDFPDHNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
.. ..-.+...+.++ ++...+..++ ++. ..++..++... ..++
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~~----------------------~~~~ 133 (475)
T PRK06327 81 VD--GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKTD----------------------AGYE 133 (475)
T ss_pred CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCCC----------------------CCCE
Confidence 00 000112222222 2222333344 333 35555555433 3466
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccC-CCCchhhhhhhhcCCCEEEEEcCCCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMD-YSDMDYEAAANLVKGKRVTVVGLQKS 214 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~VvG~G~s 214 (418)
|.+.... ..++.||+||+|||+. |..++ +.. +.+..++.+. ... ....+++|+|||+|.+
T Consensus 134 v~v~~~~---~~~~~~d~lViATGs~---p~~~p-----~~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvGgG~~ 194 (475)
T PRK06327 134 IKVTGED---ETVITAKHVIIATGSE---PRHLP-----GVP-FDNKIILDNTGALN-------FTEVPKKLAVIGAGVI 194 (475)
T ss_pred EEEecCC---CeEEEeCEEEEeCCCC---CCCCC-----CCC-CCCceEECcHHHhc-------ccccCCeEEEECCCHH
Confidence 7765321 1479999999999965 54332 211 1122222222 111 1234689999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHH
Q 014821 215 ALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVE 294 (418)
Q Consensus 215 a~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (418)
|+|+|..|...+.. |+++.+.+.+ ++... . .
T Consensus 195 g~E~A~~l~~~g~~---Vtli~~~~~~-l~~~d-------~----~---------------------------------- 225 (475)
T PRK06327 195 GLELGSVWRRLGAE---VTILEALPAF-LAAAD-------E----Q---------------------------------- 225 (475)
T ss_pred HHHHHHHHHHcCCe---EEEEeCCCcc-CCcCC-------H----H----------------------------------
Confidence 99999999888765 9999998753 33211 0 0
Q ss_pred HHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--c--EEEcC--Cc-eeeecc
Q 014821 295 ADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDG--QT-TPLKTD 366 (418)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~--v~~~~--g~-~~~~~D 366 (418)
+.+.+.+.+++.+|+++.+. +..++.+ + +.+.+ |+ ..+++|
T Consensus 226 -------------------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D 274 (475)
T PRK06327 226 -------------------------------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVD 274 (475)
T ss_pred -------------------------------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcC
Confidence 01112234455678888775 7777543 3 34444 33 238999
Q ss_pred EEEEccCCCCCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 367 LVILATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 367 ~Vi~atG~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
.||+|+|++|+...+. +....+. +.++.+.++..+.++.||||.
T Consensus 275 ~vl~a~G~~p~~~~l~------~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA 319 (475)
T PRK06327 275 KLIVSIGRVPNTDGLG------LEAVGLKLDERGFIPVDDHCRTNVPNVYA 319 (475)
T ss_pred EEEEccCCccCCCCCC------cHhhCceeCCCCeEeECCCCccCCCCEEE
Confidence 9999999999954211 1111111 345667787777778999985
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.89 E-value=5.3e-22 Score=209.14 Aligned_cols=170 Identities=23% Similarity=0.384 Sum_probs=114.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+||+++|..|++.|++|+|||+.+.+||.+....|..++ ..++..+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rl------------------------p~evL~~ 594 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRI------------------------PAELIQH 594 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccc------------------------cHHHHHH
Confidence 4799999999999999999999999999999999899876654332211 1244444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ ++.+++.+ ++.... . ....||+||||||+.
T Consensus 595 die~l~~~GV--e~~~gt~V-di~le~-------------------------------L-----~~~gYDaVILATGA~- 634 (1019)
T PRK09853 595 DIEFVKAHGV--KFEFGCSP-DLTVEQ-------------------------------L-----KNEGYDYVVVAIGAD- 634 (1019)
T ss_pred HHHHHHHcCC--EEEeCcee-EEEhhh-------------------------------h-----eeccCCEEEECcCCC-
Confidence 4555666788 78887766 222111 1 245599999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|..++++ |.+. .++++..+.............+++|+|||+|.+|+|+|..+...++. ++|++++|+....
T Consensus 635 -~~~~l~Ip---G~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa-keVTLVyRr~~~~ 706 (1019)
T PRK09853 635 -KNGGLKLE---GGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTKQE 706 (1019)
T ss_pred -CCCCCCCC---CccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC-ceEEEEEccCccc
Confidence 34555566 5431 23433322211000112334689999999999999999988776542 3699999987433
Q ss_pred cc
Q 014821 243 IP 244 (418)
Q Consensus 243 ~~ 244 (418)
.|
T Consensus 707 MP 708 (1019)
T PRK09853 707 MP 708 (1019)
T ss_pred cc
Confidence 33
No 51
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.89 E-value=4.6e-22 Score=210.71 Aligned_cols=261 Identities=15% Similarity=0.171 Sum_probs=169.7
Q ss_pred EEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 6 IAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
|||||+|++|+.+|..|++. +.+|+||++.+.++ |....+ +. +. ... .+..++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------y~r~~L--~~----~l--------~g~-~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------YNRILL--SS----VL--------QGE-ADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------cccccc--cH----HH--------CCC-CCHHHccCC
Confidence 69999999999999999875 46899999987542 110000 00 00 000 011222222
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+..++.++ +++++++|+.|+... +.|.+.++ .++.||+||+|||+
T Consensus 60 ~~~~~~~~gv--~~~~g~~V~~Id~~~------------------------k~V~~~~g-----~~~~yD~LVlATGs-- 106 (785)
T TIGR02374 60 SKDWYEKHGI--TLYTGETVIQIDTDQ------------------------KQVITDAG-----RTLSYDKLILATGS-- 106 (785)
T ss_pred CHHHHHHCCC--EEEcCCeEEEEECCC------------------------CEEEECCC-----cEeeCCEEEECCCC--
Confidence 3334456688 788889999998765 56777665 57999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
.|..|+++ |.+.. .++....+.+.. ........+++++|||+|.+|+|+|..|...+.. |+++.+.+.++
T Consensus 107 -~p~~p~ip---G~~~~--~v~~~rt~~d~~-~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~---Vtvv~~~~~ll 176 (785)
T TIGR02374 107 -YPFILPIP---GADKK--GVYVFRTIEDLD-AIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD---VSVIHHAPGLM 176 (785)
T ss_pred -CcCCCCCC---CCCCC--CEEEeCCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEccCCchh
Confidence 47777777 65432 233321111110 1112234578999999999999999999998765 99999877532
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
..... ..
T Consensus 177 ~~~ld-------~~------------------------------------------------------------------ 183 (785)
T TIGR02374 177 AKQLD-------QT------------------------------------------------------------------ 183 (785)
T ss_pred hhhcC-------HH------------------------------------------------------------------
Confidence 11111 00
Q ss_pred ccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCCC
Q 014821 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (418)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~ 397 (418)
....+.+.+++.+|+++.+. +.++..+ +|+++||++ +++|.||+|+|++|+..+++.. .+..
T Consensus 184 ---~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~-i~~D~Vi~a~G~~Pn~~la~~~--------gl~~- 250 (785)
T TIGR02374 184 ---AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS-LEADLIVMAAGIRPNDELAVSA--------GIKV- 250 (785)
T ss_pred ---HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE-EEcCEEEECCCCCcCcHHHHhc--------CCcc-
Confidence 00111234556678888876 6666543 378899998 9999999999999996554332 2222
Q ss_pred CCCccceeeeeeccCcccc
Q 014821 398 TEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~ 416 (418)
++.+.++..+.++.|+||.
T Consensus 251 ~ggI~Vd~~~~Ts~p~IyA 269 (785)
T TIGR02374 251 NRGIIVNDSMQTSDPDIYA 269 (785)
T ss_pred CCCEEECCCcccCCCCEEE
Confidence 2567787777788999985
No 52
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.88 E-value=1.4e-21 Score=196.27 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=162.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccccc----CCCCCCCCCCCCCCChhH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDHNQ 78 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 78 (418)
+|+|||||++|+++|..|++.|.+|+|||++ .+||.+.. +.|...+......++. ..+...........+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 7999999999999999999999999999995 58887665 5665444332222111 111111000011123334
Q ss_pred HHHHHHHHHHh-----------cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 79 VLDYIQSYASH-----------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 79 ~~~~l~~~~~~-----------~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
+..+..+..++ .++ ++ +..++..++. +...|...++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~~~------------------------~~v~v~~~~~----~~ 129 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFETD------------------------HRVRVEYGDK----EE 129 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEccC------------------------CEEEEeeCCC----cE
Confidence 44333332222 222 12 2234433332 2244443222 25
Q ss_pred EEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 014821 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~ 227 (418)
++.||+||+|||+. |..|+++ +.+. ..++++..... ....+++++|||+|.+|+|+|..+...+.
T Consensus 130 ~~~~d~lviATGs~---p~~~p~~---~~~~--~~v~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~l~~~g~ 194 (458)
T PRK06912 130 VVDAEQFIIAAGSE---PTELPFA---PFDG--KWIINSKHAMS-------LPSIPSSLLIVGGGVIGCEFASIYSRLGT 194 (458)
T ss_pred EEECCEEEEeCCCC---CCCCCCC---CCCC--CeEEcchHHhC-------ccccCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 79999999999954 6555555 4321 12444332222 12346899999999999999999988775
Q ss_pred CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccC
Q 014821 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (418)
Q Consensus 228 ~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (418)
. |+++.+.+. +++... . .
T Consensus 195 ~---Vtli~~~~~-ll~~~d-------~----e----------------------------------------------- 212 (458)
T PRK06912 195 K---VTIVEMAPQ-LLPGED-------E----D----------------------------------------------- 212 (458)
T ss_pred e---EEEEecCCC-cCcccc-------H----H-----------------------------------------------
Confidence 5 999998875 333211 0 0
Q ss_pred CCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC--cEEEc-CCc-eeeeccEEEEccCCCCCcchhc
Q 014821 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVVD-GQT-TPLKTDLVILATGFKGDVKLKN 382 (418)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~--~v~~~-~g~-~~~~~D~Vi~atG~~~~~~~~~ 382 (418)
+.+.+.+.+++.+|+++.+. +..++.+ .+.+. +|+ ..+++|.||+|||.+|+.....
T Consensus 213 ------------------~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 213 ------------------IAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 00112234455678888876 6666543 24443 343 2389999999999999853211
Q ss_pred cccchhhhhhhcCCCCCCccceeeeeeccCcccc
Q 014821 383 IFLSQTFQDYLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
+....+...++.+.++..+.++.||||.
T Consensus 275 ------l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 275 ------LEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred ------chhcCceecCCCEEeCCCeecCCCCEEE
Confidence 1111121223347888777788999985
No 53
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.88 E-value=6.5e-22 Score=197.71 Aligned_cols=167 Identities=26% Similarity=0.339 Sum_probs=111.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+. +....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPE------------------------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCC------------------------ccCCHHHHH
Confidence 35799999999999999999999999999999988888765432221 011134555
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.......++++ +++.++.+ . ..+++.+. ...||+||+|||+.
T Consensus 188 ~~~~~l~~~gv--~~~~~~~v------~------------------------~~v~~~~~------~~~yd~viiAtGa~ 229 (449)
T TIGR01316 188 TEIKTLKKLGV--TFRMNFLV------G------------------------KTATLEEL------FSQYDAVFIGTGAG 229 (449)
T ss_pred HHHHHHHhCCc--EEEeCCcc------C------------------------CcCCHHHH------HhhCCEEEEeCCCC
Confidence 55555566777 66665533 1 12333222 24699999999973
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhh--------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeE
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
.|..|.++ |.+. ..+++..++...... .......+++|+|||+|.+|+|+|..+...|.. |+
T Consensus 230 --~p~~~~ip---G~~~--~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~---Vt 299 (449)
T TIGR01316 230 --LPKLMNIP---GEEL--CGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE---VH 299 (449)
T ss_pred --CCCcCCCC---CCCC--CCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 47777777 6541 123333322110000 001234679999999999999999999988865 99
Q ss_pred EEEecCc
Q 014821 234 VLYRTEH 240 (418)
Q Consensus 234 ~~~r~~~ 240 (418)
+++|+..
T Consensus 300 lv~~~~~ 306 (449)
T TIGR01316 300 CLYRRTR 306 (449)
T ss_pred EEeecCc
Confidence 9999764
No 54
>PRK09897 hypothetical protein; Provisional
Probab=99.88 E-value=1.9e-20 Score=188.35 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=189.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccc--cccCCcceecCCccccc-------cCCCCC------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAW--IKTVETTMLQTPKQLYQ-------FSDYPW------ 65 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~--~~~~~~~~l~~~~~~~~-------~~~~~~------ 65 (418)
+++|+|||||++|+++|.+|.+.+ .+|+|||++..+|..+ ....+...++.+...++ |..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 368999999999999999998854 5899999988888554 33333444443322222 111100
Q ss_pred ------CC--CCCCCCCChhHHHHHHHHHHHhc-------CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 66 ------PD--SVTTDFPDHNQVLDYIQSYASHF-------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 66 ------~~--~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
.. .....|+++..+.+|+++..+.+ +..-.++.+++|++++..+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--------------------- 139 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--------------------- 139 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---------------------
Confidence 00 01246888888988888765543 2111455677999998766
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEc
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 210 (418)
+.|.|++.++. ..+.+|.||+|+|.. .|..+. +...| ....|.... .....+.+|+|+|
T Consensus 140 -~g~~V~t~~gg----~~i~aD~VVLAtGh~--~p~~~~-----~~~~y-----i~~pw~~~~----~~~i~~~~V~I~G 198 (534)
T PRK09897 140 -AGVMLATNQDL----PSETFDLAVIATGHV--WPDEEE-----ATRTY-----FPSPWSGLM----EAKVDACNVGIMG 198 (534)
T ss_pred -CEEEEEECCCC----eEEEcCEEEECCCCC--CCCCCh-----hhccc-----cCCCCcchh----hcCCCCCeEEEEC
Confidence 56778765431 478999999999964 233321 22222 112232111 1122368999999
Q ss_pred CCCCHHHHHHHHhhhc------------------CCCCCeEEEEecCcccccCCCCCC--CcchhhhhhHHHHHhhcCCC
Q 014821 211 LQKSALDIAMECTTAN------------------GLENPCTVLYRTEHWNIPDYFPWG--FPLAYLYLNRFAELLVHKPG 270 (418)
Q Consensus 211 ~G~sa~e~a~~l~~~~------------------~~~~~V~~~~r~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 270 (418)
.|++++|++..|..++ ++..+|++++|++.....+..... .|....+...+..+..+-..
T Consensus 199 tGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~P~~~~~~~~~~~p~~~lT~~~i~~~~~~~~~ 278 (534)
T PRK09897 199 TSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIAKGEE 278 (534)
T ss_pred CCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCCCCcccccCCCCCChhhhcCHHHHHHHHHhcCC
Confidence 9999999999998663 133679999999954332211011 12111111111111000000
Q ss_pred ------------------------------------------------chhHHHHHHh-----------hhhHHHHHHHH
Q 014821 271 ------------------------------------------------EGFLLSLLAT-----------MLSPLRWAISK 291 (418)
Q Consensus 271 ------------------------------------------------~~~~~~~~~~-----------~~~~~~~~~~~ 291 (418)
..+.+....- .+..+...++.
T Consensus 279 ~~L~~~~~L~~kE~~~~~~~~~~~i~~~~l~~~~~~~~~~~~r~~~~~~~~~r~~~~e~~~~~~~~~~~~w~~~i~~l~~ 358 (534)
T PRK09897 279 GLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHE 358 (534)
T ss_pred CcHHHHHHHHHHHHHHhCcchhhhccccccChHHHHHHHHhhhccCCHHHHHHHhHHHHHhhhccccCccHHHHHHHHHH
Confidence 0011111110 01122223344
Q ss_pred HHHHHHHhhhhhcccCCCCCcccccccccccccccCc-chhhhhccCcEEEeccC--ce-eEecCc--EEEcCCceeeec
Q 014821 292 FVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPE-KFYDKVEEGSIILKKSQ--DF-SFCEDG--IVVDGQTTPLKT 365 (418)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~--v~-~~~~~~--v~~~~g~~~~~~ 365 (418)
.+...|..+....++.+...+...|....+++|.-+. .+.+++++|.++++.+. +. ...+++ +..++ .. ..+
T Consensus 359 ~~~~iw~~l~~~d~~rf~~~l~~~~~~~~~~mP~~sa~~l~~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 436 (534)
T PRK09897 359 AVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVIKTED-NS-YSF 436 (534)
T ss_pred HHHHHHHhCCHHHHHHHHHhhhHHHHHhccCCChHHHHHHHHHHHcCCEEEEecCccceeEecCCeEEEEeCC-Cc-eEe
Confidence 4445555554444444444444445445666666665 77788899999999874 31 222333 44444 56 999
Q ss_pred cEEEEccCCCCC
Q 014821 366 DLVILATGFKGD 377 (418)
Q Consensus 366 D~Vi~atG~~~~ 377 (418)
|++|.|||+++-
T Consensus 437 ~~~i~a~G~~~~ 448 (534)
T PRK09897 437 DVFIDARGQRPL 448 (534)
T ss_pred CEEEECCCCCCC
Confidence 999999999964
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=99.88 E-value=1.1e-21 Score=196.58 Aligned_cols=169 Identities=24% Similarity=0.359 Sum_probs=114.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+||.+.+..|. +.++ ..++..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~~l~---------~~~~~~~ 196 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE--------------FRLP---------KETVVKK 196 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCC--------------ccCC---------ccHHHHH
Confidence 4799999999999999999999999999999988888876542221 1111 1345666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++++ .+++++.+. . .+++.+. ...+.||+||||||+.
T Consensus 197 ~~~~~~~~gv--~i~~~~~v~-----~-------------------------~v~~~~~----~~~~~~d~viiAtGa~- 239 (464)
T PRK12831 197 EIENIKKLGV--KIETNVVVG-----K-------------------------TVTIDEL----LEEEGFDAVFIGSGAG- 239 (464)
T ss_pred HHHHHHHcCC--EEEcCCEEC-----C-------------------------cCCHHHH----HhccCCCEEEEeCCCC-
Confidence 6667777888 777776541 1 1222221 0235699999999973
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCch-------hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMD-------YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|+.++++ |.+. ..++....+.... .........+++|+|||+|.+|+|+|..+...|.. |+++
T Consensus 240 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~---Vtlv 310 (464)
T PRK12831 240 -LPKFMGIP---GENL--NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE---VHIV 310 (464)
T ss_pred -CCCCCCCC---CcCC--cCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE---EEEE
Confidence 47777777 6542 1233322221100 00001235689999999999999999999998875 9999
Q ss_pred EecCc
Q 014821 236 YRTEH 240 (418)
Q Consensus 236 ~r~~~ 240 (418)
+|+..
T Consensus 311 ~r~~~ 315 (464)
T PRK12831 311 YRRSE 315 (464)
T ss_pred eecCc
Confidence 98764
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.87 E-value=3.8e-21 Score=193.01 Aligned_cols=167 Identities=27% Similarity=0.418 Sum_probs=112.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++++|||+.+.+||.+....|. +....++..+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~------------------------~~~~~~~~~~ 195 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPE------------------------FRLPKDIVDR 195 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCC------------------------ccCCHHHHHH
Confidence 4799999999999999999999999999999998888765442221 1112356666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ .++.++.+.. .+++.+. .+.||+||+|||+.
T Consensus 196 ~~~~l~~~gv--~~~~~~~v~~------------------------------~v~~~~~------~~~~d~vvlAtGa~- 236 (457)
T PRK11749 196 EVERLLKLGV--EIRTNTEVGR------------------------------DITLDEL------RAGYDAVFIGTGAG- 236 (457)
T ss_pred HHHHHHHcCC--EEEeCCEECC------------------------------ccCHHHH------HhhCCEEEEccCCC-
Confidence 6677777787 6777665411 1222221 26799999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhh--hhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA--AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|..+.++ |.+. ..+++...+....... ......+++|+|||+|.+|+|+|..|...+. ++|++++|+..
T Consensus 237 -~~~~~~i~---G~~~--~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~--~~Vtlv~~~~~ 308 (457)
T PRK11749 237 -LPRFLGIP---GENL--GGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA--ESVTIVYRRGR 308 (457)
T ss_pred -CCCCCCCC---CccC--CCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCc
Confidence 36666666 5542 1244433322111000 0122368999999999999999999988765 25999998764
No 57
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.86 E-value=8.3e-21 Score=190.05 Aligned_cols=273 Identities=13% Similarity=0.132 Sum_probs=160.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccC----CCCCCCCCCCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPD 75 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (418)
+.+|++|||+|++|..+|.. ..|.+|.++|+ ..+||.+.+ +.|...+...+..++.. .+.+.. .....+
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA--EIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC--CCCccC
Confidence 36899999999999998644 46999999998 579998877 77776665444333211 111110 011123
Q ss_pred hhHHHHHHHH-HHHh--------------cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 76 HNQVLDYIQS-YASH--------------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 76 ~~~~~~~l~~-~~~~--------------~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
...+..+... ..+. .++ ++..+.. .-. +.++|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~-~~~--------------------------~~~~V~~~~ 126 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNI--DVYDGHA-RFV--------------------------GPRTLRTGD 126 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCe--EEEEEEE-EEe--------------------------cCCEEEECC
Confidence 3444444332 1111 122 1222111 111 224566654
Q ss_pred CCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHH
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~ 220 (418)
+ .++.||+||+|||+ .|..|+.. +... ..+..+.+... ....+++++|||+|.+|+|+|.
T Consensus 127 g-----~~~~~d~lIiATGs---~p~~p~~~---~~~~--~~~~~~~~~~~-------l~~~~k~vvVIGgG~ig~E~A~ 186 (452)
T TIGR03452 127 G-----EEITGDQIVIAAGS---RPYIPPAI---ADSG--VRYHTNEDIMR-------LPELPESLVIVGGGYIAAEFAH 186 (452)
T ss_pred C-----cEEEeCEEEEEECC---CCCCCCCC---CCCC--CEEEcHHHHHh-------hhhcCCcEEEECCCHHHHHHHH
Confidence 4 46999999999995 46666533 2111 11222211111 1124789999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014821 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (418)
Q Consensus 221 ~l~~~~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (418)
.|...+.. |+++.+.+. +++... .. +. .
T Consensus 187 ~l~~~G~~---Vtli~~~~~-ll~~~d-------~~----~~--------------------------------~----- 214 (452)
T TIGR03452 187 VFSALGTR---VTIVNRSTK-LLRHLD-------ED----IS--------------------------------D----- 214 (452)
T ss_pred HHHhCCCc---EEEEEccCc-cccccC-------HH----HH--------------------------------H-----
Confidence 99888765 999998775 223211 00 00 0
Q ss_pred hhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCC
Q 014821 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFK 375 (418)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~ 375 (418)
.+.+.++ .+++++.+. +..++. ++ +.+.+|++ +++|.||+|+|++
T Consensus 215 ----------------------------~l~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~ 264 (452)
T TIGR03452 215 ----------------------------RFTEIAK-KKWDIRLGRNVTAVEQDGDGVTLTLDDGST-VTADVLLVATGRV 264 (452)
T ss_pred ----------------------------HHHHHHh-cCCEEEeCCEEEEEEEcCCeEEEEEcCCCE-EEcCEEEEeeccC
Confidence 0011122 236677665 666652 23 45567877 9999999999999
Q ss_pred CCcchhccccchhhhhhhcC-CCCCCccceeeeeeccCcccc
Q 014821 376 GDVKLKNIFLSQTFQDYLAG-SPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 416 (418)
|+.++... ....+. +.++.+.++..+.++.||||.
T Consensus 265 pn~~~l~~------~~~gl~~~~~G~i~vd~~~~Ts~~~IyA 300 (452)
T TIGR03452 265 PNGDLLDA------EAAGVEVDEDGRIKVDEYGRTSARGVWA 300 (452)
T ss_pred cCCCCcCc------hhcCeeECCCCcEeeCCCcccCCCCEEE
Confidence 99654221 111111 345678888777889999995
No 58
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=1.1e-20 Score=172.03 Aligned_cols=288 Identities=20% Similarity=0.271 Sum_probs=176.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCcccc----ccCCCCCCCCCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY----QFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (418)
.+|+.|||||..|+++|++.+.+|.++.++|..-.+||++-. +.|...+-.-+... .-.++.|+......| ++
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f-dW 98 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF-DW 98 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC-cH
Confidence 589999999999999999999999999999997689988776 44443332211111 112334443222233 22
Q ss_pred hHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 77 NQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 77 ~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
..+.+.-..+..++ ++.+....+..|.=++... .+..++...|...++ ....+.+++++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-----------------~f~~~~~v~V~~~d~---~~~~Ytak~iL 158 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-----------------RFVSPGEVEVEVNDG---TKIVYTAKHIL 158 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-----------------EEcCCCceEEEecCC---eeEEEecceEE
Confidence 34443333333333 2222223333444443332 011123345555444 24568999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 156 lAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
+||| ..|.+|.+| |.+ .-+.|..+.++. ..+++++|||+|++|+|+|..++..|.+ ++++
T Consensus 159 IAtG---g~p~~PnIp---G~E----~gidSDgff~Le-------e~Pkr~vvvGaGYIavE~Agi~~gLgse---thlf 218 (478)
T KOG0405|consen 159 IATG---GRPIIPNIP---GAE----LGIDSDGFFDLE-------EQPKRVVVVGAGYIAVEFAGIFAGLGSE---THLF 218 (478)
T ss_pred EEeC---CccCCCCCC---chh----hccccccccchh-------hcCceEEEEccceEEEEhhhHHhhcCCe---eEEE
Confidence 9999 567777777 765 234444455533 5689999999999999999999999887 9999
Q ss_pred EecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccc
Q 014821 236 YRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFL 315 (418)
Q Consensus 236 ~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (418)
.|... ++..++ +.
T Consensus 219 iR~~k-vLR~FD-------------------------------------------~~----------------------- 231 (478)
T KOG0405|consen 219 IRQEK-VLRGFD-------------------------------------------EM----------------------- 231 (478)
T ss_pred Eecch-hhcchh-------------------------------------------HH-----------------------
Confidence 99874 222221 11
Q ss_pred cccccccccccCcchhhhhccCcEEEeccC-ceeEec--Cc---EEEcCCceeeeccEEEEccCCCCCcchhccccchhh
Q 014821 316 QELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (418)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~---v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~ 389 (418)
+++...+.+....|++|... +..+.. ++ +....|+. ..+|.++||+|.+|+..-+. |
T Consensus 232 ----------i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i-~~vd~llwAiGR~Pntk~L~------l 294 (478)
T KOG0405|consen 232 ----------ISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI-EDVDTLLWAIGRKPNTKGLN------L 294 (478)
T ss_pred ----------HHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc-ccccEEEEEecCCCCccccc------c
Confidence 11222345555668888875 554432 22 34455665 77999999999999842111 2
Q ss_pred hhhhcC-CCCCCccceeeeeeccCccc
Q 014821 390 QDYLAG-SPTEKLPLYRSAHIYIDTLT 415 (418)
Q Consensus 390 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 415 (418)
+...+. +.++.+.++..+-+++|+++
T Consensus 295 e~vGVk~~~~g~IivDeYq~Tnvp~I~ 321 (478)
T KOG0405|consen 295 ENVGVKTDKNGAIIVDEYQNTNVPSIW 321 (478)
T ss_pred hhcceeeCCCCCEEEeccccCCCCceE
Confidence 222221 44677777666667777765
No 59
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-20 Score=160.64 Aligned_cols=268 Identities=16% Similarity=0.234 Sum_probs=183.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+|+|||+||++-.+|+++++..++-++||-.- .+ ...|+=+|.+-...-.|+.+|-. ....++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~----~i~pGGQLtTTT~veNfPGFPdg-------i~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-AN----GIAPGGQLTTTTDVENFPGFPDG-------ITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee-cc----CcCCCceeeeeeccccCCCCCcc-------cccHHHHHHH
Confidence 489999999999999999999999999999632 11 02223233332222233333221 2457899999
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++.+.++|. .++. ..|.+++... ..|.+.+... .+.+|.||+|||+.
T Consensus 77 rkqs~r~Gt--~i~t-EtVskv~~ss----------------------kpF~l~td~~------~v~~~avI~atGAs-- 123 (322)
T KOG0404|consen 77 RKQSERFGT--EIIT-ETVSKVDLSS----------------------KPFKLWTDAR------PVTADAVILATGAS-- 123 (322)
T ss_pred HHHHHhhcc--eeee-eehhhccccC----------------------CCeEEEecCC------ceeeeeEEEecccc--
Confidence 999999998 5555 6677777655 5587877554 79999999999976
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
.+...+|++ |...|+.+-+.++..|+-. ..++.+|..+|||+|.+|+|-|..|...+. +|++++|++.+..
T Consensus 124 -AkRl~~pg~-ge~~fWqrGiSaCAVCDGa----apifrnk~laVIGGGDsA~EEA~fLtkyas---kVyii~Rrd~fRA 194 (322)
T KOG0404|consen 124 -AKRLHLPGE-GEGEFWQRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEALFLTKYAS---KVYIIHRRDHFRA 194 (322)
T ss_pred -eeeeecCCC-CcchHHhcccchhhcccCc----chhhcCCeeEEEcCcHHHHHHHHHHHhhcc---EEEEEEEhhhhhH
Confidence 344444422 3344777777777777643 466889999999999999999999988875 4999999886432
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
.. .++.
T Consensus 195 s~------------------~Mq~-------------------------------------------------------- 200 (322)
T KOG0404|consen 195 SK------------------IMQQ-------------------------------------------------------- 200 (322)
T ss_pred HH------------------HHHH--------------------------------------------------------
Confidence 21 1100
Q ss_pred cccCcchhhhhccCcEEEeccC-ceeEecC-----cEEE-----cCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVV-----DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~-----~v~~-----~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
+.++..+|+++-+. ....-.+ ++.+ .+-+. ++++-++++.|-.|+. .|+...
T Consensus 201 --------ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~d-l~v~GlFf~IGH~Pat--------~~l~gq 263 (322)
T KOG0404|consen 201 --------RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETD-LPVSGLFFAIGHSPAT--------KFLKGQ 263 (322)
T ss_pred --------HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccc-cccceeEEEecCCchh--------hHhcCc
Confidence 13345566666654 2222222 1222 23345 9999999999999994 444443
Q ss_pred hcCCCCCCccceeee-eeccCcccc
Q 014821 393 LAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
.--+.++.+.+-... .+++||+|.
T Consensus 264 ve~d~~GYi~t~pgts~TsvpG~FA 288 (322)
T KOG0404|consen 264 VELDEDGYIVTRPGTSLTSVPGVFA 288 (322)
T ss_pred eeeccCceEEeccCcccccccceee
Confidence 443667778777666 999999995
No 60
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=174.53 Aligned_cols=336 Identities=17% Similarity=0.181 Sum_probs=215.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC---CceEEEeeCCCCCccccc--cCCcceecCCccccccC--CCC-----CCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS--DYP-----WPD--- 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~---~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~--~~~-----~~~--- 67 (418)
+++|+|||+|++|+.+|.+|.++. ..+.|||+...+|....+ ..|...+++|+..|+.. +.| |..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 479999999999999999999852 249999999999887666 66778899988777643 311 110
Q ss_pred ----------CCCCCCCChhHHHHHHHHHHHhcCcccc----eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 68 ----------SVTTDFPDHNQVLDYIQSYASHFDLRKH----IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 68 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~----v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.+...|+++..+.+|+.+....+-.... ....++++++.+.. +...
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------------n~~~ 140 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------------NAGG 140 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------------CCce
Confidence 1257889999999999888766521111 23345666666653 2356
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCc-eEEeccCCCCchhhhhhhhcCCCEEEEEcCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQ 212 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 212 (418)
|.++..++ ....||.+|+|||.. .|..+.. ..++.+ .-+.+..|.... ........+|+|+|+|
T Consensus 141 ~~~~~~~g-----~~~~ad~~Vlatgh~--~~~~~~~-----~~~~~~~~~~ia~~~~~~~---ld~v~~~drVli~Gsg 205 (474)
T COG4529 141 YLVTTADG-----PSEIADIIVLATGHS--APPADPA-----ARDLKGSPRLIADPYPANA---LDGVDADDRVLIVGSG 205 (474)
T ss_pred EEEecCCC-----CeeeeeEEEEeccCC--CCCcchh-----hhccCCCcceeccccCCcc---cccccCCCceEEecCC
Confidence 88887777 578999999999964 2322221 111211 112223332211 1245566679999999
Q ss_pred CCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCC--CCcchhhhhhHHH-------HHhhcCCCchhHHHHHHhhhh
Q 014821 213 KSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPW--GFPLAYLYLNRFA-------ELLVHKPGEGFLLSLLATMLS 283 (418)
Q Consensus 213 ~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~~~--g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 283 (418)
++.+|....|..++.. .+||+++|++ +.|..... ..|+.......+. ....-..........|+.++.
T Consensus 206 Lt~~D~v~~l~~~gh~-g~It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D 282 (474)
T COG4529 206 LTSIDQVLVLRRRGHK-GPITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVD 282 (474)
T ss_pred chhHHHHHHHhccCCc-cceEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999887765 7899999998 33333311 1231111111110 000011112233334455555
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccCceeEecC--c--EEE---
Q 014821 284 PLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCED--G--IVV--- 356 (418)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~--~--v~~--- 356 (418)
.+|......|.++-........+++.|++..+.. ...+.+.....+.+.+|.++++.+.+..+... + |.+
T Consensus 283 ~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~---R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~r 359 (474)
T COG4529 283 GLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRF---RLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRER 359 (474)
T ss_pred hhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHh---hhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeecc
Confidence 6666666666665555555666778888777642 23455666777889999999999986655432 2 443
Q ss_pred -cCCceeeeccEEEEccCCCCCcc
Q 014821 357 -DGQTTPLKTDLVILATGFKGDVK 379 (418)
Q Consensus 357 -~~g~~~~~~D~Vi~atG~~~~~~ 379 (418)
.+.++++++|.||+|||..+...
T Consensus 360 g~~~~~~l~~~~VIn~~g~~~~~~ 383 (474)
T COG4529 360 GKQHEEELDVDAVINTTGPAHDNS 383 (474)
T ss_pred ccCccceeeeeEEEEcCCcCcCCC
Confidence 34555589999999999998754
No 61
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.85 E-value=2.4e-20 Score=197.60 Aligned_cols=166 Identities=23% Similarity=0.356 Sum_probs=106.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+|||+||..|++.|++|+|||+.+.+||......|..++ + .+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rl-----------------------p-~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRI-----------------------S-AESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCC-----------------------C-HHHHHH
Confidence 4799999999999999999999999999999998888876543332111 1 234444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+..+++ .+.++... . +.+... ....||+||+|||+.
T Consensus 593 ~ie~l~~~GV--e~~~g~~~------d--------------------------~~ve~l-----~~~gYDaVIIATGA~- 632 (1012)
T TIGR03315 593 DIELVKFHGV--EFKYGCSP------D--------------------------LTVAEL-----KNQGYKYVILAIGAW- 632 (1012)
T ss_pred HHHHHHhcCc--EEEEeccc------c--------------------------eEhhhh-----hcccccEEEECCCCC-
Confidence 4455556676 56664210 0 111111 235689999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+..+.++ |... .++....+.............+++|+|||+|.+|+|+|..+....+. ++|++++|+..
T Consensus 633 -~~~~l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga-~kVtLVyRr~~ 702 (1012)
T TIGR03315 633 -KHGPLRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTK 702 (1012)
T ss_pred -CCCCCCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC-ceEEEEEccCc
Confidence 24445555 5321 23333222110000001234589999999999999999988765222 36999999764
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.85 E-value=3.9e-20 Score=197.82 Aligned_cols=167 Identities=28% Similarity=0.331 Sum_probs=117.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+..|.. ....++.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~------------------------rlp~~vi~~ 361 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEF------------------------RLPNQLIDD 361 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCC------------------------cChHHHHHH
Confidence 47999999999999999999999999999999999998876543321 112456666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++.+|+ .+++++.+- ..+++.+. ....||+||||||+.
T Consensus 362 ~i~~l~~~Gv--~f~~n~~vG------------------------------~dit~~~l-----~~~~yDAV~LAtGA~- 403 (944)
T PRK12779 362 VVEKIKLLGG--RFVKNFVVG------------------------------KTATLEDL-----KAAGFWKIFVGTGAG- 403 (944)
T ss_pred HHHHHHhhcC--eEEEeEEec------------------------------cEEeHHHh-----ccccCCEEEEeCCCC-
Confidence 6667777888 677766541 12444333 245699999999985
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhh---------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE---------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~ 233 (418)
.|+.+++| |.+. . .++...++...... .......+++|+|||+|.+|+|+|..+...|.. |+
T Consensus 404 -~pr~l~Ip---G~dl-~-GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~---Vt 474 (944)
T PRK12779 404 -LPTFMNVP---GEHL-L-GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN---VT 474 (944)
T ss_pred -CCCcCCCC---CCcC-c-CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 57777787 6432 1 23333332210000 000123689999999999999999999988875 99
Q ss_pred EEEecCc
Q 014821 234 VLYRTEH 240 (418)
Q Consensus 234 ~~~r~~~ 240 (418)
+++|+..
T Consensus 475 lv~rr~~ 481 (944)
T PRK12779 475 IVYRRTK 481 (944)
T ss_pred EEEecCc
Confidence 9998764
No 63
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.84 E-value=1.5e-20 Score=193.50 Aligned_cols=198 Identities=20% Similarity=0.283 Sum_probs=117.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CCCCccccc--cCCcceecCCccccccCC-------CCCC-----C
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDIGGAWIK--TVETTMLQTPKQLYQFSD-------YPWP-----D 67 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~~gg~~~~--~~~~~~l~~~~~~~~~~~-------~~~~-----~ 67 (418)
.+||+|||+|++|..+|..+++.|.+|+|||+. ..+||++.. +.|...+...+..++... +.+. .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 589999999999999999999999999999974 368998776 777766554443322111 1010 0
Q ss_pred C---------C--CCCCCChhHHHHHHHHHHHhcC--ccc-----ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 68 S---------V--TTDFPDHNQVLDYIQSYASHFD--LRK-----HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 68 ~---------~--~~~~~~~~~~~~~l~~~~~~~~--~~~-----~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
. + ...-.+...+.++.+...++.. ... .+..+++.+++.... . .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a--------------~f- 258 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--G--------------HI- 258 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--E--------------EE-
Confidence 0 0 0111244555555555444421 100 011122233333322 0 00
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEE
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVV 209 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv 209 (418)
.+..+|.+..+ + .++.+|+||||||+ .|.+|+++ +.+. ..++.+.+...+ ...+++|+||
T Consensus 259 -~~~~~v~v~~~--g--~~i~ad~lIIATGS---~P~~P~~~---~~~~--~~V~ts~d~~~l-------~~lpk~VvIV 318 (659)
T PTZ00153 259 -VDKNTIKSEKS--G--KEFKVKNIIIATGS---TPNIPDNI---EVDQ--KSVFTSDTAVKL-------EGLQNYMGIV 318 (659)
T ss_pred -ecCCeEEEccC--C--EEEECCEEEEcCCC---CCCCCCCC---CCCC--CcEEehHHhhhh-------hhcCCceEEE
Confidence 01122333211 1 47999999999995 57777654 3322 124433222221 1247899999
Q ss_pred cCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 210 GLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 210 G~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|+|.+|+|+|..|...+.. |+++.+.+.
T Consensus 319 GgG~iGvE~A~~l~~~G~e---VTLIe~~~~ 346 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSE---VVSFEYSPQ 346 (659)
T ss_pred CCCHHHHHHHHHHHhCCCe---EEEEeccCc
Confidence 9999999999999888765 999999875
No 64
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.84 E-value=3.2e-20 Score=196.76 Aligned_cols=168 Identities=24% Similarity=0.399 Sum_probs=112.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+||+++|..|++.|++|+|||+.+.+||.+.+..|. +.++ .++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~rlp----------~~~~~~ 486 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPE--------------FRLP----------KKIVDV 486 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCC--------------CCCC----------HHHHHH
Confidence 4799999999999999999999999999999988888876542221 1111 244555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ ++++++.+. . .+++.+. ....||+||||||+.
T Consensus 487 ~~~~l~~~gv--~~~~~~~v~-----~-------------------------~v~~~~l-----~~~~ydavvlAtGa~- 528 (752)
T PRK12778 487 EIENLKKLGV--KFETDVIVG-----K-------------------------TITIEEL-----EEEGFKGIFIASGAG- 528 (752)
T ss_pred HHHHHHHCCC--EEECCCEEC-----C-------------------------cCCHHHH-----hhcCCCEEEEeCCCC-
Confidence 5555667787 677765431 1 1222222 246699999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh-------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|+.++++ |.+. ..+++..++..... ........+++|+|||+|.+|+|+|..+...|.. +|+++
T Consensus 529 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~--~Vtlv 600 (752)
T PRK12778 529 -LPNFMNIP---GENS--NGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE--RVTIV 600 (752)
T ss_pred -CCCCCCCC---CCCC--CCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCC--eEEEe
Confidence 47777777 6442 12333332211000 0001234679999999999999999999887752 59999
Q ss_pred EecCc
Q 014821 236 YRTEH 240 (418)
Q Consensus 236 ~r~~~ 240 (418)
+|+..
T Consensus 601 ~r~~~ 605 (752)
T PRK12778 601 YRRSE 605 (752)
T ss_pred eecCc
Confidence 98764
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.83 E-value=7.9e-20 Score=190.19 Aligned_cols=166 Identities=30% Similarity=0.438 Sum_probs=109.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+....+. +....++.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPR------------------------FRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCC------------------------CCCCHHHHHH
Confidence 4799999999999999999999999999999999999887553221 1111345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ ++.+++.+ +++ +++.+. ...||+||+|||+.
T Consensus 249 ~~~~l~~~Gv--~i~~~~~v-~~d-----------------------------v~~~~~------~~~~DaVilAtGa~- 289 (652)
T PRK12814 249 DIAPLRAMGA--EFRFNTVF-GRD-----------------------------ITLEEL------QKEFDAVLLAVGAQ- 289 (652)
T ss_pred HHHHHHHcCC--EEEeCCcc-cCc-----------------------------cCHHHH------HhhcCEEEEEcCCC-
Confidence 5556667787 67766543 110 111111 23499999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+..+.++ |.+. . .++....+..... .......+++|+|||+|.+|+|+|..+...+. ++|++++|+..
T Consensus 290 -~~~~~~ip---G~~~-~-gv~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga--~~Vtlv~r~~~ 358 (652)
T PRK12814 290 -KASKMGIP---GEEL-P-GVISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA--ESVTILYRRTR 358 (652)
T ss_pred -CCCCCCCC---CcCc-C-CcEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCc
Confidence 23455566 5432 1 2333222211000 00123568999999999999999999888765 35999998874
No 66
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=171.71 Aligned_cols=261 Identities=16% Similarity=0.230 Sum_probs=180.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
...++|||+|++|..|+..+++.+. +++++-+...+- --+.+.+..++.. ...+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-ydr~~Ls~~~~~~----------------------~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-YDRARLSKFLLTV----------------------GEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-ccchhcccceeec----------------------ccccc
Confidence 4679999999999999999999876 677776543110 0000111111111 11222
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
....++.+.++. .+++++.|+.++... .+|.+.++ +++.|++++||||+
T Consensus 131 ~r~~e~Yke~gI--e~~~~t~v~~~D~~~------------------------K~l~~~~G-----e~~kys~LilATGs 179 (478)
T KOG1336|consen 131 KRTPEFYKEKGI--ELILGTSVVKADLAS------------------------KTLVLGNG-----ETLKYSKLIIATGS 179 (478)
T ss_pred ccChhhHhhcCc--eEEEcceeEEeeccc------------------------cEEEeCCC-----ceeecceEEEeecC
Confidence 233334566788 899999999999876 57888888 79999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|..|+++ |.+.. ++.. +++..+. ..........|+++|+|..|+|+|.+|...+.. ||++++.
T Consensus 180 ---~~~~l~~p---G~~~~--nv~~---ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e 245 (478)
T KOG1336|consen 180 ---SAKTLDIP---GVELK--NVFY---LREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPE 245 (478)
T ss_pred ---ccccCCCC---Ccccc--ceee---eccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCce---EEEEccC
Confidence 47777777 66521 2222 2322222 223444578899999999999999999988655 9999987
Q ss_pred CcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccc
Q 014821 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (418)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (418)
+ |+.++..
T Consensus 246 ~-~~~~~lf----------------------------------------------------------------------- 253 (478)
T KOG1336|consen 246 P-WLLPRLF----------------------------------------------------------------------- 253 (478)
T ss_pred c-cchhhhh-----------------------------------------------------------------------
Confidence 7 4444321
Q ss_pred ccccccccCcchhhhhccCcEEEeccC-ceeEecCc------EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~------v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
.+.+...+.+.+++.+|+++.+. +..++... |.+.||++ +++|.||+++|.+|+.+ ++..
T Consensus 254 ----~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~-l~adlvv~GiG~~p~t~--------~~~~ 320 (478)
T KOG1336|consen 254 ----GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT-LEADLVVVGIGIKPNTS--------FLEK 320 (478)
T ss_pred ----hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE-eccCeEEEeeccccccc--------cccc
Confidence 01122334567788889999987 56665432 77899999 99999999999999943 3332
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
...-+..|.++++..+.+++||||.
T Consensus 321 g~~~~~~G~i~V~~~f~t~~~~VyA 345 (478)
T KOG1336|consen 321 GILLDSKGGIKVDEFFQTSVPNVYA 345 (478)
T ss_pred cceecccCCEeehhceeeccCCccc
Confidence 2222778999999999888999995
No 67
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.83 E-value=5.1e-20 Score=172.55 Aligned_cols=281 Identities=16% Similarity=0.151 Sum_probs=169.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++++|||+|+|++|.++++.|-..-++|++++++.. |...|+.+..+.....-..+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny----------------------FlFTPLLpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY----------------------FLFTPLLPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc----------------------eEEeeccCCccccceeehhhhh
Confidence 468999999999999999999999999999999862 3333333222222223334444
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec--CCC-CceeEEEeCEEEEee
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED--AKN-HSTEVHQVDFVILCV 158 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~~~~i~~d~vIlAt 158 (418)
-++..+++.... .-++..+...+++.. -.|+++. .++ ..+..+.||+||+|+
T Consensus 112 PIr~i~r~k~~~-~~y~eAec~~iDp~~------------------------k~V~~~s~t~~~~~~e~~i~YDyLViA~ 166 (491)
T KOG2495|consen 112 PIRAIARKKNGE-VKYLEAECTKIDPDN------------------------KKVHCRSLTADSSDKEFVIGYDYLVIAV 166 (491)
T ss_pred hHHHHhhccCCC-ceEEecccEeecccc------------------------cEEEEeeeccCCCcceeeecccEEEEec
Confidence 455454443321 345567777877765 2344433 222 456789999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceE----------EeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 159 GRFSDVPNIPEFPPKKGPEAFHGKV----------IHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 159 G~~~~~p~~p~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
|+.+..+.+|++. ....|...+ +++.+.....+-.+++..+-.+++|||||++|+|+|.+|+..-.+
T Consensus 167 GA~~~TFgipGV~---e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~ 243 (491)
T KOG2495|consen 167 GAEPNTFGIPGVE---ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPE 243 (491)
T ss_pred cCCCCCCCCCchh---hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHH
Confidence 9886666666433 221221111 111111111100112233345799999999999999999876322
Q ss_pred -----------CCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHH
Q 014821 229 -----------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADI 297 (418)
Q Consensus 229 -----------~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (418)
.-+||++.-.+. +...+++.+..+.
T Consensus 244 Dl~k~yp~l~~~i~vtLiEA~d~--------------------------------------------iL~mFdkrl~~ya 279 (491)
T KOG2495|consen 244 DLRKIYPELKKDIKVTLIEAADH--------------------------------------------ILNMFDKRLVEYA 279 (491)
T ss_pred HHHHhhhcchhheEEEeeccchh--------------------------------------------HHHHHHHHHHHHH
Confidence 112333332221 1222222222222
Q ss_pred HhhhhhcccCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCcEEEcCC----ceeeeccEEEEcc
Q 014821 298 KKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQ----TTPLKTDLVILAT 372 (418)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~v~~~~g----~~~~~~D~Vi~at 372 (418)
.+++.+.+|+++.+. +..++++.++.+.+ ++ +++..+||+|
T Consensus 280 ---------------------------------e~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~-iPYG~lVWat 325 (491)
T KOG2495|consen 280 ---------------------------------ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEE-IPYGLLVWAT 325 (491)
T ss_pred ---------------------------------HHHhhhccceeecccEEEeecCcEEEEEcCCCceee-ecceEEEecC
Confidence 134566678888886 78888888877654 45 9999999999
Q ss_pred CCCCCcchhccccchhhhhhhcCCCCCCccceeee-eeccCcccc
Q 014821 373 GFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYRSA-HIYIDTLTY 416 (418)
Q Consensus 373 G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (418)
|..+.+-...+.. + +-+.+..++.++.-+ +++.+|||.
T Consensus 326 G~~~rp~~k~lm~-~-----i~e~~rr~L~vDE~LrV~G~~nvfA 364 (491)
T KOG2495|consen 326 GNGPRPVIKDLMK-Q-----IDEQGRRGLAVDEWLRVKGVKNVFA 364 (491)
T ss_pred CCCCchhhhhHhh-c-----CCccCceeeeeeceeeccCcCceEE
Confidence 9998842222111 1 111223478888888 999999984
No 68
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.82 E-value=4.8e-19 Score=172.02 Aligned_cols=182 Identities=22% Similarity=0.275 Sum_probs=109.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|.++++||+.+.+||.+...++. . ..+...+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~----------------------~-~~~~~~~~~~ 74 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPE----------------------F-RIPIERVREG 74 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcc----------------------c-ccCHHHHHHH
Confidence 3699999999999999999999999999999998887765432111 0 0112344444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++.+. +.++ .++.++.+..+.... . . ..+.+....... ....+.||+||+|||+.
T Consensus 75 ~~~l~-~~~i--~~~~~~~v~~~~~~~--~-~---------------~~~~~~~~~~~~---~~~~~~~d~lviAtGs~- 129 (352)
T PRK12770 75 VKELE-EAGV--VFHTRTKVCCGEPLH--E-E---------------EGDEFVERIVSL---EELVKKYDAVLIATGTW- 129 (352)
T ss_pred HHHHH-hCCe--EEecCcEEeeccccc--c-c---------------cccccccccCCH---HHHHhhCCEEEEEeCCC-
Confidence 44444 3476 677777765543310 0 0 011122111111 01247899999999963
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCC-------CCc-hhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDY-------SDM-DYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|..|+++ |.+. ..++.+..+ ... ..........+++|+|||+|.+|+|+|..|...+.. +|++
T Consensus 130 -~~~~~~ip---g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtv 201 (352)
T PRK12770 130 -KSRKLGIP---GEDL--PGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAE--KVYL 201 (352)
T ss_pred -CCCcCCCC---Cccc--cCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEE
Confidence 36667777 5432 122222110 000 000000123478999999999999999999876542 4999
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
+.|+..
T Consensus 202 i~~~~~ 207 (352)
T PRK12770 202 AYRRTI 207 (352)
T ss_pred Eeecch
Confidence 998653
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.81 E-value=7.6e-19 Score=183.53 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=110.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|..+ ...++..+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~------------------------l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFK------------------------LDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCcc------------------------CCHHHHHH
Confidence 479999999999999999999999999999999999987665333211 11345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++|+ .+.+++.+.. . +++.+. ...||.||+|||+.
T Consensus 383 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------i~~~~~------~~~~DavilAtGa~- 423 (654)
T PRK12769 383 RREIFSAMGI--EFELNCEVGK----D--------------------------ISLESL------LEDYDAVFVGVGTY- 423 (654)
T ss_pred HHHHHHHCCe--EEECCCEeCC----c--------------------------CCHHHH------HhcCCEEEEeCCCC-
Confidence 5566677787 6777765521 0 111111 23599999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cchhh--hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.+..+.++ +.+. . .++....+. ..... .......+++|+|||+|.+|+|+|..+...+. ++|
T Consensus 424 -~~~~l~i~---g~~~-~-Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga--~~V 495 (654)
T PRK12769 424 -RSMKAGLP---NEDA-P-GVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA--SNV 495 (654)
T ss_pred -CCCCCCCC---CCCC-C-CeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34445555 4332 1 122211110 00000 00012457899999999999999988888775 259
Q ss_pred EEEEecCccccc
Q 014821 233 TVLYRTEHWNIP 244 (418)
Q Consensus 233 ~~~~r~~~~~~~ 244 (418)
++++|+.....|
T Consensus 496 t~i~~~~~~~~~ 507 (654)
T PRK12769 496 TCAYRRDEANMP 507 (654)
T ss_pred EEeEecCCCCCC
Confidence 999987653333
No 70
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.81 E-value=8e-19 Score=189.40 Aligned_cols=169 Identities=24% Similarity=0.316 Sum_probs=112.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+|||++|..|++.|++|+|||+.+.+||......|. +....++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~------------------------~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPS------------------------FRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCc------------------------cCCCHHHHHH
Confidence 4789999999999999999999999999999998888765442221 1122456666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ ++++++.+ +. . +++.+.. ....||+||||||+.
T Consensus 486 ~~~~l~~~Gv--~~~~~~~v-g~---~--------------------------~~~~~l~----~~~~yDaViIATGa~- 528 (1006)
T PRK12775 486 EVQRLVDIGV--KIETNKVI-GK---T--------------------------FTVPQLM----NDKGFDAVFLGVGAG- 528 (1006)
T ss_pred HHHHHHHCCC--EEEeCCcc-CC---c--------------------------cCHHHHh----hccCCCEEEEecCCC-
Confidence 6667778888 77776533 11 1 1111110 024589999999974
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh--------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY--------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|+.++++ |.+. +.+++..++..... ........+++|+|||+|.+|+|+|..+...|.. .|++
T Consensus 529 -~pr~l~Ip---G~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~--~Vti 600 (1006)
T PRK12775 529 -APTFLGIP---GEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAP--TVRC 600 (1006)
T ss_pred -CCCCCCCC---CcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCC--EEEE
Confidence 47777777 6431 23444433221100 0001234689999999999999999888877653 5899
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
++|+..
T Consensus 601 v~rr~~ 606 (1006)
T PRK12775 601 VYRRSE 606 (1006)
T ss_pred EeecCc
Confidence 988754
No 71
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.81 E-value=1.1e-18 Score=175.75 Aligned_cols=164 Identities=24% Similarity=0.298 Sum_probs=104.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+....+. +....++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPD------------------------FKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCc------------------------ccCCHHHHHH
Confidence 3799999999999999999999999999999998888776542221 1111345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++++ .+.+++.+.. + +.... ....||+||+|||+.
T Consensus 199 ~~~~~~~~gv--~~~~~~~v~~-~-----------------------------~~~~~------~~~~~d~vvlAtGa~- 239 (471)
T PRK12810 199 RIELMEAEGI--EFRTNVEVGK-D-----------------------------ITAEE------LLAEYDAVFLGTGAY- 239 (471)
T ss_pred HHHHHHhCCc--EEEeCCEECC-c-----------------------------CCHHH------HHhhCCEEEEecCCC-
Confidence 5556677787 6777665421 1 00001 134699999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCc-----h-h-hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDM-----D-Y-EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~ 235 (418)
.|..+.++ |.+. ..+....++... . . ........+++|+|||+|.+|+|+|..+...+.. +|+.+
T Consensus 240 -~~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~--~Vt~~ 311 (471)
T PRK12810 240 -KPRDLGIP---GRDL--DGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK--SVTQR 311 (471)
T ss_pred -CCCcCCCC---CccC--CCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEc
Confidence 35566666 5432 123332111100 0 0 0001234689999999999999999888777652 47754
Q ss_pred Ee
Q 014821 236 YR 237 (418)
Q Consensus 236 ~r 237 (418)
.+
T Consensus 312 ~~ 313 (471)
T PRK12810 312 DI 313 (471)
T ss_pred cc
Confidence 43
No 72
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.80 E-value=1.3e-18 Score=174.52 Aligned_cols=171 Identities=25% Similarity=0.407 Sum_probs=111.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|++++|+|+.+.+||.+...+|.. ....++.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~------------------------~~~~~~~~~ 196 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF------------------------KLDKAVLSR 196 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc------------------------cCCHHHHHH
Confidence 37899999999999999999999999999999998888765433221 111355666
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+.++|+ .+++++.+.. . +.+.+ ....||.||+|||+..
T Consensus 197 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------~~~~~------~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 197 RREIFTAMGI--EFHLNCEVGR----D--------------------------ISLDD------LLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHHHHHCCC--EEECCCEeCC----c--------------------------cCHHH------HHhcCCEEEEEeCCCC
Confidence 6677778888 7887776521 0 11111 1246999999999762
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cch--hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMD--YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
+..++++ |.+. ..+.+...+. ... .........+++++|||+|.+|+|+|..+...+.. +|
T Consensus 239 --~~~~~i~---g~~~--~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~--~V 309 (467)
T TIGR01318 239 --SMRGGLP---GEDA--PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAA--SV 309 (467)
T ss_pred --CCcCCCC---CcCC--CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCC--eE
Confidence 2334455 5432 1133221110 000 00000123579999999999999999998887742 49
Q ss_pred EEEEecCccccc
Q 014821 233 TVLYRTEHWNIP 244 (418)
Q Consensus 233 ~~~~r~~~~~~~ 244 (418)
++++|++...+|
T Consensus 310 tvv~r~~~~~~~ 321 (467)
T TIGR01318 310 TCAYRRDEANMP 321 (467)
T ss_pred EEEEecCcccCC
Confidence 999998754333
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.7e-18 Score=155.03 Aligned_cols=263 Identities=17% Similarity=0.230 Sum_probs=182.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+||||||+|.++|.+.+++|++.-++-. ++||.-..+..-- .|- ...+....++...
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IE---------NfI--------sv~~teGpkl~~a 271 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIE---------NFI--------SVPETEGPKLAAA 271 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchh---------hee--------ccccccchHHHHH
Confidence 48999999999999999999999998777654 3676544422110 011 1222345688889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++..++|.+ .+.--.+++++++..- .++...|++.++ -.++++.||+|||+.+
T Consensus 272 le~Hv~~Y~v--Dimn~qra~~l~~a~~-------------------~~~l~ev~l~nG-----avLkaktvIlstGArW 325 (520)
T COG3634 272 LEAHVKQYDV--DVMNLQRASKLEPAAV-------------------EGGLIEVELANG-----AVLKARTVILATGARW 325 (520)
T ss_pred HHHHHhhcCc--hhhhhhhhhcceecCC-------------------CCccEEEEecCC-----ceeccceEEEecCcch
Confidence 9999999988 5665567778877530 135688999988 4899999999999763
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
+-..+| |.++|...-+-.|..|+ ...+++|+|+|||+|.||+|+|-.|+.--.+ ||++.=.+..
T Consensus 326 ---Rn~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF~~eL- 389 (520)
T COG3634 326 ---RNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEL- 389 (520)
T ss_pred ---hcCCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhhe---eeeeecchhh-
Confidence 334455 88888766666555555 5679999999999999999999999876554 8887633320
Q ss_pred ccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccccc
Q 014821 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (418)
Q Consensus 243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (418)
. .| .. +
T Consensus 390 ----k-----AD------------------------------------~V----L------------------------- 395 (520)
T COG3634 390 ----K-----AD------------------------------------AV----L------------------------- 395 (520)
T ss_pred ----h-----hH------------------------------------HH----H-------------------------
Confidence 0 00 00 0
Q ss_pred ccccCcchhhhhc-cCcEEEeccC-ceeEecCc-----EEEc---CCce-eeeccEEEEccCCCCCcchhccccchhhhh
Q 014821 323 TITVPEKFYDKVE-EGSIILKKSQ-DFSFCEDG-----IVVD---GQTT-PLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (418)
Q Consensus 323 ~~~~~~~~~~~~~-~~~v~~~~~~-v~~~~~~~-----v~~~---~g~~-~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~ 391 (418)
.+.++ -.+++++.+. -..+.+++ +... +|+. -++-+-|+.-.|.-|+ +.||..
T Consensus 396 --------q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PN--------T~WLkg 459 (520)
T COG3634 396 --------QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPN--------TEWLKG 459 (520)
T ss_pred --------HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccC--------hhHhhc
Confidence 11111 2457777765 55665542 3332 3433 2567779999999999 688888
Q ss_pred hhcCCCCCCccceeeeeeccCcccc
Q 014821 392 YLAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
..--...|.+.+...-.+++||+|.
T Consensus 460 ~vel~~rGEIivD~~g~TsvpGvFA 484 (520)
T COG3634 460 AVELNRRGEIIVDARGETNVPGVFA 484 (520)
T ss_pred hhhcCcCccEEEecCCCcCCCceee
Confidence 7654557778888888999999995
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.79 E-value=1e-17 Score=181.82 Aligned_cols=241 Identities=16% Similarity=0.131 Sum_probs=150.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+||+|||||+|||+||..|++.|.+++|+|+.+.+||.+...... ..-.+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~----------------------~~g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAET----------------------IDGKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccc----------------------cCCccHHHHHHH
Confidence 4799999999999999999999999999999999898876542100 000112344333
Q ss_pred HHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE-Ee-------cC-CCCceeEEEeC
Q 014821 83 IQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA-VE-------DA-KNHSTEVHQVD 152 (418)
Q Consensus 83 l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~i~~d 152 (418)
+.+.+..++ + .+..++.|.++.... ....+. .. .+ ..+....+.+|
T Consensus 221 ~~~~l~~~~~v--~v~~~t~V~~i~~~~----------------------~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 221 TVAELTAMPEV--TLLPRTTAFGYYDHN----------------------TVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred HHHHHhcCCCc--EEEcCCEEEEEecCC----------------------eEEEEEEeeeccccccCCccccceEEEEcC
Confidence 444444443 5 677788888875422 000010 00 00 00112368999
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.||||||+. +..|+++ |.+. . .++......... .......+++|+|||+|.+|+|+|..|...+.. .|
T Consensus 277 ~VILATGa~---~r~~pip---G~~~-p-gV~~~~~~~~~l--~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~--vV 344 (985)
T TIGR01372 277 RVVLATGAH---ERPLVFA---NNDR-P-GVMLAGAARTYL--NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA--VV 344 (985)
T ss_pred EEEEcCCCC---CcCCCCC---CCCC-C-CcEEchHHHHHH--HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc--eE
Confidence 999999965 6667777 5432 1 222211111100 001224689999999999999999999988743 36
Q ss_pred EEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc
Q 014821 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (418)
Q Consensus 233 ~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (418)
+++.+.+. +.+
T Consensus 345 ~vv~~~~~-~~~-------------------------------------------------------------------- 355 (985)
T TIGR01372 345 AIIDARAD-VSP-------------------------------------------------------------------- 355 (985)
T ss_pred EEEccCcc-hhH--------------------------------------------------------------------
Confidence 77765432 000
Q ss_pred ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecC----cEEEc----CCceeeeccEEEEccCCCCCcchhcc
Q 014821 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVD----GQTTPLKTDLVILATGFKGDVKLKNI 383 (418)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~----~v~~~----~g~~~~~~D~Vi~atG~~~~~~~~~~ 383 (418)
.+.+.+++.+|+++.+. +..+..+ +|++. ++++ +++|.|++++|+.|+..+...
T Consensus 356 ----------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~-i~~D~V~va~G~~Pnt~L~~~ 418 (985)
T TIGR01372 356 ----------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQR-LEADALAVSGGWTPVVHLFSQ 418 (985)
T ss_pred ----------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEE-EECCEEEEcCCcCchhHHHHh
Confidence 01224455667888776 6666543 34554 3456 999999999999999877665
Q ss_pred ccch
Q 014821 384 FLSQ 387 (418)
Q Consensus 384 l~~~ 387 (418)
++..
T Consensus 419 lg~~ 422 (985)
T TIGR01372 419 RGGK 422 (985)
T ss_pred cCCC
Confidence 5443
No 75
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.77 E-value=8.8e-18 Score=167.55 Aligned_cols=209 Identities=19% Similarity=0.217 Sum_probs=133.7
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE--eCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ--VDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~--~d~vIlAtG~~ 161 (418)
+.+..++++ .++++++|+.++... ..|.+.+..++ .++. ||+||+|||+
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~~~--~~~~~~yd~lIiATG~- 101 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDER------------------------QTVVVRNNKTN--ETYEESYDYLILSPGA- 101 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECCC------------------------CEEEEEECCCC--CEEecCCCEEEECCCC-
Confidence 344567788 788889999998755 34555443212 3566 9999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhh--hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAAN--LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|..|+++ |.+. ..++......... ..... ...+++|+|||+|.+|+|+|..|...+.. |+++.+++
T Consensus 102 --~p~~~~i~---G~~~--~~v~~~~~~~~~~-~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 170 (427)
T TIGR03385 102 --SPIVPNIE---GINL--DIVFTLRNLEDTD-AIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSE 170 (427)
T ss_pred --CCCCCCCC---CcCC--CCEEEECCHHHHH-HHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCc
Confidence 57777777 6541 1233322211100 00011 14578999999999999999999887765 99999877
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccc
Q 014821 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (418)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (418)
....+... ..
T Consensus 171 ~~~~~~~~-----------~~----------------------------------------------------------- 180 (427)
T TIGR03385 171 RILNKLFD-----------EE----------------------------------------------------------- 180 (427)
T ss_pred ccCccccC-----------HH-----------------------------------------------------------
Confidence 53222111 00
Q ss_pred cccccccCcchhhhhccCcEEEeccC-ceeEecCc--EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcCC
Q 014821 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGS 396 (418)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~ 396 (418)
+.+.+.+.+++.+|+++.+. +..++.++ +.+.+|++ +++|.||+|+|++++.++++.++... +
T Consensus 181 ------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~~-------~ 246 (427)
T TIGR03385 181 ------MNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGV-YQADMVILATGIKPNSELAKDSGLKL-------G 246 (427)
T ss_pred ------HHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCE-EEeCEEEECCCccCCHHHHHhcCccc-------C
Confidence 00111234455678888765 77776544 36778888 99999999999999954433322221 3
Q ss_pred CCCCccceeeeeeccCcccc
Q 014821 397 PTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~ 416 (418)
.++.+.++..+.++.|+||.
T Consensus 247 ~~G~i~vd~~~~t~~~~Vya 266 (427)
T TIGR03385 247 ETGAIWVNEKFQTSVPNIYA 266 (427)
T ss_pred CCCCEEECCCcEeCCCCEEE
Confidence 45678887777778999985
No 76
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.76 E-value=2.8e-17 Score=164.02 Aligned_cols=266 Identities=16% Similarity=0.173 Sum_probs=175.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
|.+.++||||.|++|..+...+++ .-+++++|...+++. |.-.++.. . ...--+.+
T Consensus 1 m~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n------Y~Ri~Ls~---------v------l~~~~~~e 59 (793)
T COG1251 1 MKKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN------YNRILLSS---------V------LAGEKTAE 59 (793)
T ss_pred CCceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc------ccceeecc---------c------cCCCccHH
Confidence 778899999999999999999998 346899998866332 22222211 0 00001223
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++.-.-.++.++.++ +++.+.+|+.|+++. ..|+...+ .++.||.||+|
T Consensus 60 di~l~~~dwy~~~~i--~L~~~~~v~~idr~~------------------------k~V~t~~g-----~~~~YDkLilA 108 (793)
T COG1251 60 DISLNRNDWYEENGI--TLYTGEKVIQIDRAN------------------------KVVTTDAG-----RTVSYDKLIIA 108 (793)
T ss_pred HHhccchhhHHHcCc--EEEcCCeeEEeccCc------------------------ceEEccCC-----cEeecceeEEe
Confidence 343334455677788 899999999999877 56887777 79999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 158 tG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
|| +.|.+|++| |.+.+ .++-...+.++.- ........++-+|||+|+-|+|+|..|...|-+ +++++-
T Consensus 109 TG---S~pfi~PiP---G~~~~--~v~~~R~i~D~~a-m~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~ 176 (793)
T COG1251 109 TG---SYPFILPIP---GSDLP--GVFVYRTIDDVEA-MLDCARNKKKAVVIGGGLLGLEAARGLKDLGME---VTVVHI 176 (793)
T ss_pred cC---ccccccCCC---CCCCC--CeeEEecHHHHHH-HHHHHhccCCcEEEccchhhhHHHHHHHhCCCc---eEEEee
Confidence 99 558888888 76543 2333222222111 112233455689999999999999999998876 888775
Q ss_pred cCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccc
Q 014821 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (418)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (418)
.+. ++. +-++....++++
T Consensus 177 ~~~-lMe------------------------------------------rQLD~~ag~lL~------------------- 194 (793)
T COG1251 177 APT-LME------------------------------------------RQLDRTAGRLLR------------------- 194 (793)
T ss_pred cch-HHH------------------------------------------HhhhhHHHHHHH-------------------
Confidence 552 111 111111122221
Q ss_pred cccccccccCcchhhhhccCcEEEeccC-ceeEe----cCcEEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhh
Q 014821 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC----EDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (418)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~----~~~v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~ 392 (418)
..+++..++++.+. ...+. ..++.++||+. +++|.||+|+|++|+..++..-
T Consensus 195 --------------~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~-i~ad~VV~a~GIrPn~ela~~a-------- 251 (793)
T COG1251 195 --------------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE-IPADLVVMAVGIRPNDELAKEA-------- 251 (793)
T ss_pred --------------HHHHhhcceeecccchhhhhcCcceeeEeecCCCc-ccceeEEEecccccccHhHHhc--------
Confidence 23344445555543 22222 24689999999 9999999999999995544433
Q ss_pred hcCCCCCCccceeeeeeccCcccc
Q 014821 393 LAGSPTEKLPLYRSAHIYIDTLTY 416 (418)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~ 416 (418)
++ ..+.++.++..|.++.|+||.
T Consensus 252 Gl-avnrGIvvnd~mqTsdpdIYA 274 (793)
T COG1251 252 GL-AVNRGIVVNDYMQTSDPDIYA 274 (793)
T ss_pred Cc-CcCCCeeecccccccCCCeee
Confidence 33 233488899999999999985
No 77
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.76 E-value=3.5e-17 Score=151.29 Aligned_cols=198 Identities=17% Similarity=0.242 Sum_probs=122.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcceecCCccccccCCC-CCCC---CCCCCCCCh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDY-PWPD---SVTTDFPDH 76 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~ 76 (418)
.+|++|||+||+|..||...++.|++.+++|++..+||++.. +.|+..|-..+..|+.... .+.. +....-.+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 489999999999999999999999999999999999999888 7777766666665554433 1110 001111223
Q ss_pred hHHHHHHHHHHHhc--CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 77 NQVLDYIQSYASHF--DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 77 ~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
..++......++.+ ++. ..+-..+|+-+.... .+...+ .|.+... ++....+.++++
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~g-----------------sf~~p~--~V~v~k~-dg~~~ii~aKnI 177 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFG-----------------SFLDPN--KVSVKKI-DGEDQIIKAKNI 177 (506)
T ss_pred HHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeE-----------------eecCCc--eEEEecc-CCCceEEeeeeE
Confidence 34444443333333 110 111223344333322 000012 2333322 245679999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 155 ILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 155 IlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
|+|||+. ++..|.+ .--...++.|---.. -..-+++++|||+|.+|+|+..-..+.|.+ ||+
T Consensus 178 iiATGSe--V~~~PGI------~IDekkIVSStgALs-------L~~vPk~~~viG~G~IGLE~gsV~~rLGse---VT~ 239 (506)
T KOG1335|consen 178 IIATGSE--VTPFPGI------TIDEKKIVSSTGALS-------LKEVPKKLTVIGAGYIGLEMGSVWSRLGSE---VTV 239 (506)
T ss_pred EEEeCCc--cCCCCCe------EecCceEEecCCccc-------hhhCcceEEEEcCceeeeehhhHHHhcCCe---EEE
Confidence 9999964 5556644 322223343332222 225589999999999999999888888876 998
Q ss_pred EEecC
Q 014821 235 LYRTE 239 (418)
Q Consensus 235 ~~r~~ 239 (418)
+.--+
T Consensus 240 VEf~~ 244 (506)
T KOG1335|consen 240 VEFLD 244 (506)
T ss_pred EEehh
Confidence 87443
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.75 E-value=5.8e-17 Score=161.38 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=109.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHh--CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL--KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~--~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
.++|+||||||||+.+|..|++ .|++|+|||+.+.+||..++.. .+.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHHH
Confidence 4789999999999999999997 6899999999998888665421 11223334556
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
..+.+.....++ .++.|..+- . .+++.+- ...||.||+|||+
T Consensus 83 ~~~~~~~~~~~v--~~~~nv~vg-----~-------------------------dvtl~~L------~~~yDaVIlAtGa 124 (491)
T PLN02852 83 NQFSRVATDDRV--SFFGNVTLG-----R-------------------------DVSLSEL------RDLYHVVVLAYGA 124 (491)
T ss_pred HHHHHHHHHCCe--EEEcCEEEC-----c-------------------------cccHHHH------hhhCCEEEEecCC
Confidence 666666666565 444444331 1 1222222 2469999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh------hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhh---------
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANLVKGKRVTVVGLQKSALDIAMECTTA--------- 225 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~--------- 225 (418)
.. +..++++ |.+. ..++...++..+.. ........+++|+|||+|.+|+|+|..|...
T Consensus 125 ~~--~~~l~Ip---G~d~--~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi 197 (491)
T PLN02852 125 ES--DRRLGIP---GEDL--PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDI 197 (491)
T ss_pred CC--CCCCCCC---CCCC--CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccc
Confidence 52 3556666 5431 12443333211000 0001223589999999999999999998764
Q ss_pred -----------cCCCCCeEEEEecCc
Q 014821 226 -----------NGLENPCTVLYRTEH 240 (418)
Q Consensus 226 -----------~~~~~~V~~~~r~~~ 240 (418)
+. ++|+++.|++.
T Consensus 198 ~~~~l~~l~~~~~--~~V~iv~RRg~ 221 (491)
T PLN02852 198 AEHALEALRGSSV--RKVYLVGRRGP 221 (491)
T ss_pred cHHHHHHHhhCCC--CEEEEEEcCCh
Confidence 22 46999999884
No 79
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.75 E-value=2.9e-17 Score=170.94 Aligned_cols=168 Identities=24% Similarity=0.364 Sum_probs=111.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++||++|..|++.|++|+|||+.+.+||.|.+..|..++ + ..+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l-----------------------~-~~~~~~ 365 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL-----------------------D-KTVLSQ 365 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC-----------------------C-HHHHHH
Confidence 4789999999999999999999999999999999999887764432111 1 345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+..+|+ .+++++++.. . +++.+ ....+|.|++|||+.
T Consensus 366 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------~~~~~------l~~~~DaV~latGa~- 406 (639)
T PRK12809 366 RREIFTAMGI--DFHLNCEIGR----D--------------------------ITFSD------LTSEYDAVFIGVGTY- 406 (639)
T ss_pred HHHHHHHCCe--EEEcCCccCC----c--------------------------CCHHH------HHhcCCEEEEeCCCC-
Confidence 5566777888 7777765521 1 11111 124589999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCC--------Cchh--hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCe
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDY--EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V 232 (418)
.+..+.++ |.+. . .+++...+. .... ........+++|+|||+|.+|+|.|..+...|. ++|
T Consensus 407 -~~~~~~i~---g~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga--~~V 478 (639)
T PRK12809 407 -GMMRADLP---HEDA-P-GVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA--ASV 478 (639)
T ss_pred -CCCCCCCC---CCcc-C-CcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34455566 5432 1 122211110 0000 000122468999999999999999988877775 259
Q ss_pred EEEEecCcc
Q 014821 233 TVLYRTEHW 241 (418)
Q Consensus 233 ~~~~r~~~~ 241 (418)
++++|+...
T Consensus 479 t~v~rr~~~ 487 (639)
T PRK12809 479 TCAYRRDEV 487 (639)
T ss_pred EEeeecCcc
Confidence 999997643
No 80
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.1e-17 Score=146.54 Aligned_cols=197 Identities=18% Similarity=0.248 Sum_probs=132.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC--CCCCccccccCCcceecC---Ccccccc-----------CCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR--SDIGGAWIKTVETTMLQT---PKQLYQF-----------SDYPWP 66 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~--~~~gg~~~~~~~~~~l~~---~~~~~~~-----------~~~~~~ 66 (418)
.+|++|||||.+||++|+.++..|.+|.++|-- .-.|..|-- .++.+++ |+.+|+- ..+.|.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl--GGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL--GGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc--CceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 589999999999999999999999999998832 224444433 3333332 5555532 134455
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 67 DSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
......-+++..+.+..+...+..+. -.+..-+=..+.+.+. =..+ .+...+...+. .++.
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW--~yRv~LreKkV~Y~Ns--------------ygeF--v~~h~I~at~~-~gk~ 157 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNW--GYRVQLREKKVEYINS--------------YGEF--VDPHKIKATNK-KGKE 157 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccc--eEEEEeccceeeeeec--------------ceee--cccceEEEecC-CCce
Confidence 43234566778888888888887765 2332222223333220 0000 01123333332 2456
Q ss_pred eEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 147 ~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
+.+.++.+|+||| .+|++|++| |..+| .+.|.++..+. +.+.+-+|||+|+.|.|.|..|...|
T Consensus 158 ~~~ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl~-------~~PGkTLvVGa~YVaLECAgFL~gfg 221 (503)
T KOG4716|consen 158 RFLTAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSLP-------YEPGKTLVVGAGYVALECAGFLKGFG 221 (503)
T ss_pred EEeecceEEEEec---CCCCCCCCC---Cceee---eeccccccccc-------CCCCceEEEccceeeeehhhhHhhcC
Confidence 7899999999999 679999999 87665 56666666543 55677889999999999999999999
Q ss_pred CCCCCeEEEEecC
Q 014821 227 GLENPCTVLYRTE 239 (418)
Q Consensus 227 ~~~~~V~~~~r~~ 239 (418)
.+ |+++.|+=
T Consensus 222 ~~---vtVmVRSI 231 (503)
T KOG4716|consen 222 YD---VTVMVRSI 231 (503)
T ss_pred CC---cEEEEEEe
Confidence 87 99999874
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.75 E-value=2.9e-17 Score=168.97 Aligned_cols=165 Identities=24% Similarity=0.359 Sum_probs=104.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++||++|..|++.|++|+|+|+.+.+||.+....+..+ + + .++...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~----------------------~-~-~~~~~~ 192 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYR----------------------L-P-REVLDA 192 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCcc----------------------C-C-HHHHHH
Confidence 368999999999999999999999999999999999987655332211 1 1 234444
Q ss_pred HHHHHHhcCcccceEeeeEE-EEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKV-VGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
-...+.+++. .+.+++.+ .++.... ....+|+||+|+|+.
T Consensus 193 ~l~~~~~~Gv--~~~~~~~~~~~~~~~~-------------------------------------~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 193 EIQRILDLGV--EVRLGVRVGEDITLEQ-------------------------------------LEGEFDAVFVAIGAQ 233 (564)
T ss_pred HHHHHHHCCC--EEEeCCEECCcCCHHH-------------------------------------HHhhCCEEEEeeCCC
Confidence 4445566787 66666554 2211110 012489999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 162 ~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
. +..+.++ +.+. +.+++...+.... ........+++|+|||+|.+|+|.+..+...+. ..|++++|.+.
T Consensus 234 ~--~~~~~i~---g~~~--~gv~~~~~~l~~~-~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~~~ 302 (564)
T PRK12771 234 L--GKRLPIP---GEDA--AGVLDAVDFLRAV-GEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRRTR 302 (564)
T ss_pred C--CCcCCCC---CCcc--CCcEEHHHHHHHh-hccCCcCCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEecCc
Confidence 2 3334455 4321 1223222221100 000123458899999999999999988877763 35899998764
No 82
>PRK13984 putative oxidoreductase; Provisional
Probab=99.74 E-value=3.4e-17 Score=170.06 Aligned_cols=166 Identities=23% Similarity=0.298 Sum_probs=105.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+++|..|++.|++++|||+.+.+||.+....+.. ....++...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~------------------------~~~~~~~~~ 338 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSY------------------------RLPDEALDK 338 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcc------------------------cCCHHHHHH
Confidence 47899999999999999999999999999999988887655422211 111344444
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.++++++ .+++++.|.. . +.... ....||+||+|||+.
T Consensus 339 ~~~~~~~~gv--~~~~~~~v~~----~--------------------------~~~~~------~~~~yD~vilAtGa~- 379 (604)
T PRK13984 339 DIAFIEALGV--KIHLNTRVGK----D--------------------------IPLEE------LREKHDAVFLSTGFT- 379 (604)
T ss_pred HHHHHHHCCc--EEECCCEeCC----c--------------------------CCHHH------HHhcCCEEEEEcCcC-
Confidence 4556667787 7777766521 1 00011 134699999999975
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchhh----hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcC---CCCCeEEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE----AAANLVKGKRVTVVGLQKSALDIAMECTTANG---LENPCTVL 235 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~---~~~~V~~~ 235 (418)
.|+.++++ |.+. ..+++...+...... .......+++|+|||+|.+|+|+|..|...+. ...+|+++
T Consensus 380 -~~r~l~i~---G~~~--~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 380 -LGRSTRIP---GTDH--PDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred -CCccCCCC---CcCC--cCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 36667777 6432 123332222110000 00011236899999999999999999987642 11247776
Q ss_pred Ee
Q 014821 236 YR 237 (418)
Q Consensus 236 ~r 237 (418)
..
T Consensus 454 ~~ 455 (604)
T PRK13984 454 SL 455 (604)
T ss_pred cc
Confidence 53
No 83
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.71 E-value=3.5e-16 Score=157.76 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=106.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+++|..|++.|++|+|||+.+.+||...+..|. +....++..+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~------------------------~~~~~~~~~~~ 199 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPN------------------------MKLDKAIVDRR 199 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCC------------------------ccCCHHHHHHH
Confidence 699999999999999999999999999999988887754432221 11112344444
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.++++++ .+++++.+. .+ +.. +. ....||.||+|||+.
T Consensus 200 ~~~~~~~Gv--~~~~~~~v~-~~-----------------------------~~~-~~-----~~~~~d~VilAtGa~-- 239 (485)
T TIGR01317 200 IDLLSAEGI--DFVTNTEIG-VD-----------------------------ISA-DE-----LKEQFDAVVLAGGAT-- 239 (485)
T ss_pred HHHHHhCCC--EEECCCEeC-Cc-----------------------------cCH-HH-----HHhhCCEEEEccCCC--
Confidence 455666787 777776653 11 000 01 135699999999975
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCC--------CCch-hhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDY--------SDMD-YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|..+.++ |.+. . .+.....+ .... .........+++|+|||+|.+|+|+|..+...+. ..|++
T Consensus 240 ~~~~l~i~---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga--~~V~v 312 (485)
T TIGR01317 240 KPRDLPIP---GREL-K-GIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA--ASVHQ 312 (485)
T ss_pred CCCcCCCC---CcCC-C-CcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--CEEEE
Confidence 36667777 5431 1 12221111 0000 0000112468999999999999999888777665 25999
Q ss_pred EEecCc
Q 014821 235 LYRTEH 240 (418)
Q Consensus 235 ~~r~~~ 240 (418)
+.+.+.
T Consensus 313 v~~~~~ 318 (485)
T TIGR01317 313 FEIMPK 318 (485)
T ss_pred EEecCC
Confidence 987654
No 84
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.55 E-value=5.1e-13 Score=131.35 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=38.4
Q ss_pred CccEEEEcCCHHHHHHHHHHH-hCCCceEEEeeCCCCCcccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLL-LKGFHPIVFEARSDIGGAWIKT 45 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~-~~~~~v~iie~~~~~gg~~~~~ 45 (418)
.++|+||||||||+.+|..|+ +.+++|+|||+.+.+||.+++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 468999999999999999876 5699999999999999988773
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.54 E-value=1e-13 Score=145.27 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.++|+||||||||+++|+.|++.|++|++||+....|
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL 419 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence 4799999999999999999999999999999965433
No 86
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.51 E-value=9.5e-14 Score=137.15 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=115.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
-++|+||||||+||++|..|++.|++|+++|+.+..||...+..|..++ ..++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl------------------------~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKL------------------------PKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhc------------------------cchHHHH
Confidence 3789999999999999999999999999999999999887765443222 2478888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
..+.+++.|. +++.++++-. .++...- .-.+|+|++|+|+.
T Consensus 179 ~i~~l~~~Gv--~~~~~~~vG~------------------------------~it~~~L------~~e~Dav~l~~G~~- 219 (457)
T COG0493 179 RLELLERSGV--EFKLNVRVGR------------------------------DITLEEL------LKEYDAVFLATGAG- 219 (457)
T ss_pred HHHHHHHcCe--EEEEcceECC------------------------------cCCHHHH------HHhhCEEEEecccc-
Confidence 8888888887 7888776531 1221221 23459999999986
Q ss_pred CCCCCCCCCCCCCCCCCCceEEeccCCCCchh-h-------hhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEE
Q 014821 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-E-------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~ 234 (418)
.|+..+++ |.+. ..+....++..... . ......++++|+|||+|.+++|++......|. ++|+.
T Consensus 220 -~~~~l~i~---g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga--~~v~~ 291 (457)
T COG0493 220 -KPRPLDIP---GEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA--KSVTC 291 (457)
T ss_pred -CCCCCCCC---CcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC--eEEEE
Confidence 68877777 5541 12222222211000 0 01122345999999999999999988877776 36888
Q ss_pred EEec
Q 014821 235 LYRT 238 (418)
Q Consensus 235 ~~r~ 238 (418)
+.|.
T Consensus 292 ~~~~ 295 (457)
T COG0493 292 FYRE 295 (457)
T ss_pred eccc
Confidence 8743
No 87
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=129.87 Aligned_cols=261 Identities=18% Similarity=0.154 Sum_probs=153.6
Q ss_pred EEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 6 IAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|||+|++|+.+|..|++. +.+++++........ ...+.+............+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY--------------------YRCPLSLYVGGGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC--------------------CCCccchHHhcccCCHHHhcccc
Confidence 58999999999999998884 457877777542210 00000000000000001111111
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
. ...+.++ .+..+++|..++... ..+.+.++ .+.||++|+|||+.
T Consensus 61 ~-~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g------~~~yd~LvlatGa~-- 105 (415)
T COG0446 61 R-FNRATGI--DVRTGTEVTSIDPEN------------------------KVVLLDDG------EIEYDYLVLATGAR-- 105 (415)
T ss_pred h-hHHhhCC--EEeeCCEEEEecCCC------------------------CEEEECCC------cccccEEEEcCCCc--
Confidence 1 1134466 688888999998766 45666655 79999999999965
Q ss_pred CCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccc
Q 014821 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~ 243 (418)
|..++.. .. ..+.......... .........++++|+|+|..|+++|..+..+|.. |+++...++...
T Consensus 106 -~~~~~~~---~~----~~~~~~~~~~~~~-~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~ 173 (415)
T COG0446 106 -PRPPPIS---DW----EGVVTLRLREDAE-ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGG 173 (415)
T ss_pred -ccCCCcc---cc----CceEEECCHHHHH-HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccch
Confidence 5554311 11 1122211111111 0111122258999999999999999999999865 999998875322
Q ss_pred cCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccccccccc
Q 014821 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (418)
Q Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (418)
....
T Consensus 174 ~~~~---------------------------------------------------------------------------- 177 (415)
T COG0446 174 QLLD---------------------------------------------------------------------------- 177 (415)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 2100
Q ss_pred cccCcchhhhhccCcEEEeccC-ceeEecCc-------EEEcCCceeeeccEEEEccCCCCCcchhccccchhhhhhhcC
Q 014821 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG 395 (418)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~-------v~~~~g~~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~ 395 (418)
+.+.+.+.+.++..+|+++.+. +..++... +...++.. +++|.+++++|.+++..+....... ..
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~~p~~~l~~~~~~~------~~ 250 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE-IKADLVIIGPGERPNVVLANDALPG------LA 250 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE-EEeeEEEEeecccccHHHHhhCccc------ee
Confidence 0011122334455557776665 56666432 56778888 9999999999999984333322100 22
Q ss_pred CCCCCccceeeeeec-cCcccc
Q 014821 396 SPTEKLPLYRSAHIY-IDTLTY 416 (418)
Q Consensus 396 ~~~~~~~~~~~~~~~-~~~~~~ 416 (418)
...+.+.++..+..+ .+++|.
T Consensus 251 ~~~g~i~v~~~~~~~~~~~v~a 272 (415)
T COG0446 251 LAGGAVLVDERGGTSKDPDVYA 272 (415)
T ss_pred ccCCCEEEccccccCCCCCEEe
Confidence 445668888888554 777774
No 88
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=123.57 Aligned_cols=137 Identities=19% Similarity=0.336 Sum_probs=97.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------ccccCCc----ceecCC---cc----ccccC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKTVET----TMLQTP---KQ----LYQFS 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~~~~----~~l~~~---~~----~~~~~ 61 (418)
|+++||+|||||+|||.+|..++++|.+|+|||+++.+|.. ++.+... ..-+.| .. +..|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 88999999999999999999999999999999999987642 2221111 111112 00 00111
Q ss_pred -----------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 62 -----------DYPWPD-SVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 62 -----------~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
..++-. ..-.-|| ....+.+.+...+++.++ +++.+++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----------------
Confidence 111111 1123444 466788888888899999 899999999999986
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
..+.+.+.++ .++.||.||+|||.. +.|.+
T Consensus 142 -----~~f~l~t~~g-----~~i~~d~lilAtGG~-S~P~l 171 (408)
T COG2081 142 -----SGFRLDTSSG-----ETVKCDSLILATGGK-SWPKL 171 (408)
T ss_pred -----ceEEEEcCCC-----CEEEccEEEEecCCc-CCCCC
Confidence 5688988887 589999999999977 46644
No 89
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=7.2e-12 Score=107.01 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=95.3
Q ss_pred EEEcCCHHHHHHHHHHHhC-----CCceEEEeeCCCC-Ccccccc-CCcceecCCccccccCCC-C-----------C--
Q 014821 7 AIVGAGVSGLLACKYLLLK-----GFHPIVFEARSDI-GGAWIKT-VETTMLQTPKQLYQFSDY-P-----------W-- 65 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~-----~~~v~iie~~~~~-gg~~~~~-~~~~~l~~~~~~~~~~~~-~-----------~-- 65 (418)
+|||+|++|++++.+|.++ ..+|+|||++..- |+.|... .+...+|+++..|+...- + .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 3589999996553 3577774 788889998887765321 1 0
Q ss_pred --CCCCCCCCCChhHHHHHHHHHHHhcC--ccc--c-eEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEE
Q 014821 66 --PDSVTTDFPDHNQVLDYIQSYASHFD--LRK--H-IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (418)
Q Consensus 66 --~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~--~-v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (418)
.......|+++..+.+||++..+++- +.. . .....+|++|+..+ +.|.|.+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~----------------------~~~~v~~ 138 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD----------------------DGYRVVT 138 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC----------------------CcEEEEE
Confidence 01114689999999999999877752 110 1 23456899999877 5688888
Q ss_pred ecCCCCceeEEEeCEEEEeecc
Q 014821 139 EDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 139 ~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.++ ..+.||.||||||.
T Consensus 139 ~~g-----~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 139 ADG-----QSIRADAVVLATGH 155 (156)
T ss_pred CCC-----CEEEeCEEEECCCC
Confidence 777 58899999999995
No 90
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.36 E-value=5.7e-12 Score=129.78 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=103.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+||+||++|-.|-+.|..|+|+||.+++||...+-.|++.+. ..+.+.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkld------------------------k~vv~rr 1841 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLD------------------------KFVVQRR 1841 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchh------------------------HHHHHHH
Confidence 6899999999999999999999999999999999999988877765441 2344444
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
-+....-|+ .+..|+++-.- +.... -.-+.|.||+|+|+.
T Consensus 1842 v~ll~~egi--~f~tn~eigk~------------------------------vs~d~------l~~~~daiv~a~gst-- 1881 (2142)
T KOG0399|consen 1842 VDLLEQEGI--RFVTNTEIGKH------------------------------VSLDE------LKKENDAIVLATGST-- 1881 (2142)
T ss_pred HHHHHhhCc--eEEeecccccc------------------------------ccHHH------HhhccCeEEEEeCCC--
Confidence 455555566 55555554221 11111 134579999999986
Q ss_pred CCCCCCCCCCCCCCCC----CceEEeccC--CCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 014821 164 VPNIPEFPPKKGPEAF----HGKVIHSMD--YSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (418)
Q Consensus 164 ~p~~p~~~~~~g~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~ 228 (418)
.|+-.+++ |-+.. .=..+|... +.+-..+--....++|+|+|||+|.+|.|....-..+|..
T Consensus 1882 ~prdlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1882 TPRDLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred CCcCCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 67766676 43321 000111110 0000000012346799999999999999998887777763
No 91
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.27 E-value=2.7e-11 Score=118.77 Aligned_cols=135 Identities=27% Similarity=0.376 Sum_probs=76.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------ccccC----CcceecC----Ccccc----cc---
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKTV----ETTMLQT----PKQLY----QF--- 60 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~~----~~~~l~~----~~~~~----~~--- 60 (418)
|||+|||||+|||.||..|++.|.+|+|+|+++.+|.. ++.+. +...... +.... .|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 69999999999999999999999999999999988632 22211 0000000 00000 00
Q ss_pred ------C--CCCCCCC-CCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 61 ------S--DYPWPDS-VTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 61 ------~--~~~~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
. ..++... ....|| ....+.+-|...+++.++ +++++++|.+++..+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~------------------- 139 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKE------------------- 139 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEET-------------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecC-------------------
Confidence 0 0111100 012222 467888888888999999 899999999999876
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
++.|.|.+.+. .++.||.||||||.. +.|..
T Consensus 140 --~~~f~v~~~~~-----~~~~a~~vILAtGG~-S~p~~ 170 (409)
T PF03486_consen 140 --DGVFGVKTKNG-----GEYEADAVILATGGK-SYPKT 170 (409)
T ss_dssp --TEEEEEEETTT-----EEEEESEEEE----S-SSGGG
T ss_pred --CceeEeeccCc-----ccccCCEEEEecCCC-Ccccc
Confidence 34588888444 699999999999987 34543
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=108.66 Aligned_cols=170 Identities=24% Similarity=0.288 Sum_probs=109.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (418)
...|+|||+||||+.+|..|+++ +++|.|+|+.+.+.|..++.. .+..|.-..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhhHH
Confidence 46899999999999999999984 589999999998887766511 22333334445
Q ss_pred HHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 81 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
..+.+.+++-.. .++-|.+|- -.+.+++- +-.||.||||.|+
T Consensus 77 ntFt~~aE~~rf--sf~gNv~vG------------------------------~dvsl~eL------~~~ydavvLaYGa 118 (468)
T KOG1800|consen 77 NTFTKTAEHERF--SFFGNVKVG------------------------------RDVSLKEL------TDNYDAVVLAYGA 118 (468)
T ss_pred HHHHHHhhccce--EEEecceec------------------------------ccccHHHH------hhcccEEEEEecC
Confidence 555666665333 233333330 01222222 4569999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEeccCCCCchh-----hhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhcCC-------
Q 014821 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-----EAAANLVKGKRVTVVGLQKSALDIAMECTTANGL------- 228 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~~~------- 228 (418)
. -++..++| |.+. ..++....+-.+.+ .....+....+|+|||.|..|+|+|..|...-..
T Consensus 119 ~--~dR~L~IP---Ge~l--~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi 191 (468)
T KOG1800|consen 119 D--GDRRLDIP---GEEL--SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDI 191 (468)
T ss_pred C--CCcccCCC---Cccc--ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCC
Confidence 7 57788888 6551 12444333322221 1122445588999999999999999988764221
Q ss_pred ------------CCCeEEEEecCc
Q 014821 229 ------------ENPCTVLYRTEH 240 (418)
Q Consensus 229 ------------~~~V~~~~r~~~ 240 (418)
-+.|+++.|++.
T Consensus 192 ~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 192 PKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred cHHHHhhhhcCCcceEEEEeccCc
Confidence 145888888773
No 93
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.16 E-value=3.2e-10 Score=111.97 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=91.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------cCCcce--ecC--CccccccCCC--
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTM--LQT--PKQLYQFSDY-- 63 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------~~~~~~--l~~--~~~~~~~~~~-- 63 (418)
|.++||+||||||||++||+.|++.|++|+++|+...+|..... ..+... +.. ....+.+..-
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 67899999999999999999999999999999998877642222 001100 000 0000000100
Q ss_pred CCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC
Q 014821 64 PWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (418)
Q Consensus 64 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (418)
..... .......+..+.++|...+.+.|. .+...+++..+..++ +...+.+..+.
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 136 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED----------------------DGVVVGVRAGD 136 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC----------------------CcEEEEEEcCC
Confidence 00000 012333578888999999999999 899999999999887 44555554442
Q ss_pred CCceeEEEeCEEEEeeccCC
Q 014821 143 NHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 143 ~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++.+++||.|+|..+
T Consensus 137 ----~e~~a~~vI~AdG~~s 152 (396)
T COG0644 137 ----DEVRAKVVIDADGVNS 152 (396)
T ss_pred ----EEEEcCEEEECCCcch
Confidence 6899999999999875
No 94
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.15 E-value=3.4e-10 Score=104.60 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=86.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc-ccc--cCCcceecCCc-cccccCCCCCCCCCC-CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA-WIK--TVETTMLQTPK-QLYQFSDYPWPDSVT-TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~-~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 77 (418)
.+||+|||||++|+++|+.|++.|++|+|+|++..+|+. |.. .++...+..+. .++.-...++..... ....++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 589999999999999999999999999999999888764 321 12211111110 011111112211101 1223566
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec------CCCCceeEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED------AKNHSTEVHQV 151 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~i~~ 151 (418)
++...|...+.+.+. .++++++|.++...+ + +...-+.+.. +......++.+
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~--~------------------g~V~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRE--D------------------PRVAGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeC--C------------------CcEEEEEEccccccccCCCCCcEEEEc
Confidence 777888888888898 899999999998755 0 0111122211 11123468999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||+|||..+
T Consensus 163 k~VI~ATG~~a 173 (257)
T PRK04176 163 KAVVDATGHDA 173 (257)
T ss_pred CEEEEEeCCCc
Confidence 99999999875
No 95
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.14 E-value=9.2e-10 Score=103.49 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=146.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC--------ccccccCCcceecCCccccccCCCCCCC-----C
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG--------GAWIKTVETTMLQTPKQLYQFSDYPWPD-----S 68 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g--------g~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~ 68 (418)
...+|||+|.+..+++...... +.++.+|...+..- ..|.+..|+ +...+.|..+.-.. .
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn-----~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPN-----SAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCC-----hhhheeecccCCccceeEec
Confidence 4689999999999888777664 45677776654321 122222221 11222222211100 0
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeE
Q 014821 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (418)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 148 (418)
...+|.+..++-. +..-|+ .+....+|+.|+..+ ..|+++++ .+
T Consensus 254 pd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------------~~V~LnDG-----~~ 297 (659)
T KOG1346|consen 254 PDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------------KKVILNDG-----TT 297 (659)
T ss_pred CCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------------CeEEecCC-----cE
Confidence 0233333332211 223355 677777888888766 56888888 69
Q ss_pred EEeCEEEEeeccCCCCCCCCCCCCCCCCCCCC-ceEEecc-CCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhhhc
Q 014821 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH-GKVIHSM-DYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (418)
Q Consensus 149 i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~~~ 226 (418)
|.||.++||||. .|.-.++....+.+... -.++|.. ++..+. .-....++|.|||+|..|-|+|-.|....
T Consensus 298 I~YdkcLIATG~---~Pk~l~~~~~A~~evk~kit~fr~p~DF~rle----k~~aek~siTIiGnGflgSELacsl~rk~ 370 (659)
T KOG1346|consen 298 IGYDKCLIATGV---RPKKLQVFEEASEEVKQKITYFRYPADFKRLE----KGLAEKQSITIIGNGFLGSELACSLKRKY 370 (659)
T ss_pred eehhheeeecCc---CcccchhhhhcCHHhhhheeEEecchHHHHHH----HhhhhcceEEEEcCcchhhhHHHHHHHhh
Confidence 999999999995 46644322111222111 1233322 122211 22334588999999999999999998643
Q ss_pred C-CCCCeEEEEecCcccccCCCCCCCcchhhhhhHHHHHhhcCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhcc
Q 014821 227 G-LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (418)
Q Consensus 227 ~-~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
. ...+|+.+..... ++. +.+.+++.
T Consensus 371 r~~g~eV~QvF~Ek~-----------nm~------------------------------------kiLPeyls------- 396 (659)
T KOG1346|consen 371 RNEGVEVHQVFEEKY-----------NME------------------------------------KILPEYLS------- 396 (659)
T ss_pred hccCcEEEEeecccC-----------Chh------------------------------------hhhHHHHH-------
Confidence 3 2234665554321 000 01111111
Q ss_pred cCCCCCcccccccccccccccCcchhhhhccCcEEEeccC-ceeEe--cCc--EEEcCCceeeeccEEEEccCCCCCcch
Q 014821 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (418)
Q Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~--v~~~~g~~~~~~D~Vi~atG~~~~~~~ 380 (418)
.-..+.++.++|.++.+. |..+. .+. +.+.||.+ +..|.||.|+|-.|+..+
T Consensus 397 ----------------------~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~-l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 397 ----------------------QWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSE-LRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred ----------------------HHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCe-eeeeeEEEEecCCCchhh
Confidence 111357788899999886 54443 333 56789999 999999999999999776
Q ss_pred hc
Q 014821 381 KN 382 (418)
Q Consensus 381 ~~ 382 (418)
+.
T Consensus 454 a~ 455 (659)
T KOG1346|consen 454 AE 455 (659)
T ss_pred cc
Confidence 65
No 96
>PRK06184 hypothetical protein; Provisional
Probab=99.14 E-value=9.3e-10 Score=112.16 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=87.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc-------------------cCCcceecCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK-------------------TVETTMLQTPK 55 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~-------------------~~~~~~l~~~~ 55 (418)
|+++||+|||||++||++|..|+++|++++|||+.+.+... +.. .++......+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 88999999999999999999999999999999998754211 000 00000000000
Q ss_pred ccc-c--cCCC--CCCC--CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 56 QLY-Q--FSDY--PWPD--SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 56 ~~~-~--~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
... . +... +... .......++..+.+.|.+.+.+.+. ++.+++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~------------------- 139 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA------------------- 139 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC-------------------
Confidence 000 0 0000 0000 0001122455667778888887787 899999999998766
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+.+++++.... ...++.+|+||.|+|..|...
T Consensus 140 ---~~v~v~~~~~~--~~~~i~a~~vVgADG~~S~vR 171 (502)
T PRK06184 140 ---DGVTARVAGPA--GEETVRARYLVGADGGRSFVR 171 (502)
T ss_pred ---CcEEEEEEeCC--CeEEEEeCEEEECCCCchHHH
Confidence 44666664321 236899999999999986433
No 97
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.13 E-value=3.6e-10 Score=109.46 Aligned_cols=136 Identities=24% Similarity=0.223 Sum_probs=87.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------------------c--CCcceecCCcc-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------------------T--VETTMLQTPKQ- 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------------------~--~~~~~l~~~~~- 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+...... . ...........
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 379999999999999999999999999999998754211100 0 00000000000
Q ss_pred ---------ccccCCCC-CCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 57 ---------LYQFSDYP-WPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 57 ---------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
......+. ...........+..+.+.|.+.+++.+. .+.+++++++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~----------------- 141 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD----------------- 141 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET-----------------
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc-----------------
Confidence 00000000 0000011223567888999999998897 899999999998876
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+...+.+.+..++..+++.+|.||.|.|..|
T Consensus 142 -----~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 142 -----DGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp -----TEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred -----cccccccccccCCceeEEEEeeeecccCccc
Confidence 4456666676667778999999999999986
No 98
>PRK08013 oxidoreductase; Provisional
Probab=99.12 E-value=5.8e-10 Score=110.38 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc---c---ccc---------------cCCccee--cCCccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---A---WIK---------------TVETTML--QTPKQL 57 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg---~---~~~---------------~~~~~~l--~~~~~~ 57 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+.+.. . .+. ..+.+.- ..+...
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 7889999999999999999999999999999999875321 0 000 0000000 001111
Q ss_pred cccCC------CCCCCC--CC---CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCC
Q 014821 58 YQFSD------YPWPDS--VT---TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125 (418)
Q Consensus 58 ~~~~~------~~~~~~--~~---~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 125 (418)
+.+.+ ..+... .. .....+..+.+.|.+.+... ++ ++.++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~---------------- 142 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGE---------------- 142 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------
Confidence 11100 000000 00 11234567777777777765 56 788999999998765
Q ss_pred CCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 126 QPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 126 ~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+...|++.++ .++.+|.||.|.|..|......
T Consensus 143 ------~~v~v~~~~g-----~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 143 ------NEAFLTLKDG-----SMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred ------CeEEEEEcCC-----CEEEeeEEEEeCCCCcHHHHHc
Confidence 4466766555 5799999999999987444433
No 99
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.12 E-value=3.7e-11 Score=107.03 Aligned_cols=153 Identities=24% Similarity=0.366 Sum_probs=84.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHH--H-
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL--D- 81 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 81 (418)
||+|||||+||+++|..|++.+.+++|+|+.+..+.. ....+...+.... .....+. +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIPSPLLVEIA------------------PHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHHHHHHHHHH------------------HHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccccccccccccc------------------ccccccccccc
Confidence 7999999999999999999999999999886522110 0000000000000 0000111 0
Q ss_pred -HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 -YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 -~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+.+...+.+. ++.+++++.+++... +. + ....+.+.... ++...++.||+||+|||.
T Consensus 62 ~~~~~~~~~~~v--~~~~~~~v~~i~~~~----~~------------~-~~~~~~~~~~~--~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 62 FKLVDQLKNRGV--EIRLNAKVVSIDPES----KR------------V-VCPAVTIQVVE--TGDGREIKYDYLVIATGS 120 (201)
T ss_dssp GHHHHHHHHHTH--EEEHHHTEEEEEEST----TE------------E-EETCEEEEEEE--TTTEEEEEEEEEEEESTE
T ss_pred cccccccccceE--EEeeccccccccccc----cc------------c-ccCcccceeec--cCCceEecCCeeeecCcc
Confidence 22222344566 677889999998766 00 0 00012222211 234578999999999995
Q ss_pred CCCCCCCCCCCCCCCCCC--CCceEEeccCCCCchhhhhhhhcCCCEEEEEc
Q 014821 161 FSDVPNIPEFPPKKGPEA--FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210 (418)
Q Consensus 161 ~~~~p~~p~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 210 (418)
. |..|.++ |.+. +...+.++..+.. .....++|+|||
T Consensus 121 ~---~~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 121 R---PRTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp E---EEEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred c---cceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 4 6666676 6521 1122333222222 223455999999
No 100
>PRK06834 hypothetical protein; Provisional
Probab=99.12 E-value=1.1e-09 Score=110.87 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=88.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c-----ccccc---CCcce----ec---CCccccccC--
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G-----AWIKT---VETTM----LQ---TPKQLYQFS-- 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g-----~~~~~---~~~~~----l~---~~~~~~~~~-- 61 (418)
|..+||+|||||++|+++|..|+++|++++|||+.+.+. + .+... +...- +. .+.....|.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 788999999999999999999999999999999976431 1 01100 00000 00 000000111
Q ss_pred CCCC---CCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 62 DYPW---PDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 62 ~~~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
...+ +... ......+..+.+.|.+.++++++ .+++++++++++.++ +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~----------------------~~v~v~ 136 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDD----------------------TGVDVE 136 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC----------------------CeEEEE
Confidence 0011 1000 11122456777788888888888 899999999998876 446666
Q ss_pred EecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+.++ .++.+|+||.|+|..|......
T Consensus 137 ~~~g-----~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 137 LSDG-----RTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred ECCC-----CEEEeCEEEEecCCCCCcHhhc
Confidence 6443 4799999999999987444443
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.12 E-value=6.3e-10 Score=105.08 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=85.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----------cCCcceecCCccccccC-------CCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTMLQTPKQLYQFS-------DYPW 65 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----------~~~~~~l~~~~~~~~~~-------~~~~ 65 (418)
+||+|||||++|+++|+.|++.|++|+|+|+...++..+.. ..+............+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 59999999999999999999999999999998765542221 00000000000000000 0111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
+.. .....++..+.+.+.+.+.+.+. ++.++++|+++...+ +.+.+.+.++
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~----------------------~~~~~~~~~~---- 131 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD----------------------DRVVVIVRGG---- 131 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC----------------------CEEEEEEcCc----
Confidence 100 11224677888888888888888 899999999998766 3344544432
Q ss_pred eeEEEeCEEEEeeccCC
Q 014821 146 TEVHQVDFVILCVGRFS 162 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~~ 162 (418)
..++.+|+||+|+|..+
T Consensus 132 ~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 132 EGTVTAKIVIGADGSRS 148 (295)
T ss_pred cEEEEeCEEEECCCcch
Confidence 25799999999999874
No 102
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.10 E-value=2.6e-09 Score=94.83 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=60.0
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCCCCCCCCCCCCCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQK 213 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 213 (418)
.-+.+.++ ..+.|++|.+|+| ..|.... + +.+ ..++--.+-.. .........+.|.|.|+|.|-
T Consensus 81 hci~t~~g-----~~~ky~kKOG~tg---~kPklq~-E---~~n---~~Iv~irDtDs-aQllq~kl~kaK~VlilgnGg 144 (334)
T KOG2755|consen 81 HCIHTQNG-----EKLKYFKLCLCTG---YKPKLQV-E---GIN---PKIVGIRDTDS-AQLLQCKLVKAKIVLILGNGG 144 (334)
T ss_pred ceEEecCC-----ceeeEEEEEEecC---CCcceee-c---CCC---ceEEEEecCcH-HHHHHHHHhhcceEEEEecCc
Confidence 34666666 5899999999999 4565531 1 222 22332111111 111234667899999999999
Q ss_pred CHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC
Q 014821 214 SALDIAMECTTANGLENPCTVLYRTEHWNIPDYF 247 (418)
Q Consensus 214 sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~ 247 (418)
+++|++.++.... |+|....+ ++...+.
T Consensus 145 ia~El~yElk~~n-----v~w~ikd~-~IsaTFf 172 (334)
T KOG2755|consen 145 IAMELTYELKILN-----VTWKIKDE-GISATFF 172 (334)
T ss_pred hhHHHHHHhhcce-----eEEEecch-hhhhccc
Confidence 9999999997643 88888765 5666655
No 103
>PRK06847 hypothetical protein; Provisional
Probab=99.09 E-value=1.7e-09 Score=106.03 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc--ccCC---------cce-----ecCCccccccC-----
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI--KTVE---------TTM-----LQTPKQLYQFS----- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~--~~~~---------~~~-----l~~~~~~~~~~----- 61 (418)
++||+|||||++|+++|..|++.|++++|+|+.+.+...-. ...+ ++. ...+...+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57999999999999999999999999999999864321000 0000 000 00001101100
Q ss_pred ---CCCCCC-----CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 62 ---DYPWPD-----SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 62 ---~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.++.+. ........+..+.+++.+.+.+.++ .+.++++|++++... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~ 139 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD----------------------DG 139 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC----------------------CE
Confidence 011000 0011234567888889888888888 899999999998765 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.|.+.++ .++.+|.||.|+|..|
T Consensus 140 ~~v~~~~g-----~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 140 VTVTFSDG-----TTGRYDLVVGADGLYS 163 (375)
T ss_pred EEEEEcCC-----CEEEcCEEEECcCCCc
Confidence 67776655 4799999999999885
No 104
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.08 E-value=9.1e-10 Score=108.54 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=82.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--ccccCCcce------e-------cCCccccccCC---
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--WIKTVETTM------L-------QTPKQLYQFSD--- 62 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--~~~~~~~~~------l-------~~~~~~~~~~~--- 62 (418)
|+.+||+|||||++|+++|..|+++|++|+|||+.+..... +....++.+ + ..+...+.+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 34579999999999999999999999999999997643210 000000000 0 00111111100
Q ss_pred ------------CCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 63 ------------YPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 63 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
............++..+.+.+.+.+.+++. ...++++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~~--------------------- 141 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPRE--------------------- 141 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEcC---------------------
Confidence 000000001123456677777777777654 347789999998765
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 142 -~~~~v~~~~g-----~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 142 -DEVTVTLADG-----TTLSARLVVGADGRNS 167 (388)
T ss_pred -CeEEEEECCC-----CEEEEeEEEEecCCCc
Confidence 5577877655 5799999999999885
No 105
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.08 E-value=1.5e-09 Score=100.10 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=87.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCcc-ccccCCCCCCCCCC-CCCCChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQ-LYQFSDYPWPDSVT-TDFPDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 77 (418)
.+||+|||||++|+++|+.|+++|++++|+|++..+|+ .|.. .++...+..+.. ++.-...++..... .....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 58999999999999999999999999999999988764 4433 222222221111 11111222221101 1122456
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec------CCCCceeEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED------AKNHSTEVHQV 151 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~i~~ 151 (418)
++...|...+.+.+. ++++++.|.++...+ +. ....-|.+.. +......++.+
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~~~--~~-----------------~~V~GVv~~~~~v~~~g~~~d~~~i~A 159 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLITRD--DT-----------------VGVAGVVINWSAIELAGLHVDPLTQRS 159 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEEeC--CC-----------------CceEEEEeCCccccccCCCCCCEEEEc
Confidence 788888888888898 899999999998765 10 0011122211 11112468999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||.|||..+
T Consensus 160 k~VVdATG~~a 170 (254)
T TIGR00292 160 RVVVDATGHDA 170 (254)
T ss_pred CEEEEeecCCc
Confidence 99999999653
No 106
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.06 E-value=3.1e-09 Score=109.26 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=89.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---c----------------------CCcceecCCcc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---T----------------------VETTMLQTPKQ 56 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~----------------------~~~~~l~~~~~ 56 (418)
..+||+|||||++|+++|..|+++|++++|||+.+.+....+. . .....+.....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998765321111 0 00111100000
Q ss_pred --ccccCCCCCC--CCCC-CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 57 --LYQFSDYPWP--DSVT-TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 57 --~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
...+.. +.. ..+. .....+..+.+.|.+.+.++ ++ .++++++|++++.++
T Consensus 89 ~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~--------------------- 144 (538)
T PRK06183 89 RCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD--------------------- 144 (538)
T ss_pred CEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC---------------------
Confidence 001110 000 0000 11224556777787777765 67 799999999998876
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.++|++.+. +|...++++|+||.|+|..|....
T Consensus 145 -~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S~vR~ 178 (538)
T PRK06183 145 -DGVTVTLTDA-DGQRETVRARYVVGCDGANSFVRR 178 (538)
T ss_pred -CeEEEEEEcC-CCCEEEEEEEEEEecCCCchhHHH
Confidence 4577777643 344578999999999999864433
No 107
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.06 E-value=3.2e-09 Score=104.66 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=84.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CC---CCccccc-c--------------CCcceecCCccccccCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SD---IGGAWIK-T--------------VETTMLQTPKQLYQFSDYP 64 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~---~gg~~~~-~--------------~~~~~l~~~~~~~~~~~~~ 64 (418)
+||+||||||+|+++|+.|++.|++|+|+|+. .. .|+.... . ..+..+..|..... ...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPI--KVT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCcee--eec
Confidence 69999999999999999999999999999997 21 1211110 0 01111111111000 001
Q ss_pred CCCCCCCCC---CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 65 WPDSVTTDF---PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
.+. ...+ ..+..+.++|.+.+.+.|. ++.. +.|+++...+ +.+.|++.++
T Consensus 79 ~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~~----------------------~~~~v~~~~~ 131 (388)
T TIGR02023 79 IPS--EDGYVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERDR----------------------DGVTLTYRTP 131 (388)
T ss_pred cCC--CCCceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEcC----------------------CeEEEEEEec
Confidence 111 1112 5778888899998888888 6754 5688887665 4577776642
Q ss_pred ---CCCceeEEEeCEEEEeeccCCC
Q 014821 142 ---KNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 142 ---~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.++...++.+|.||.|+|..|.
T Consensus 132 ~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 132 KKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred cccCCCcceEEEeCEEEECCCCCcH
Confidence 1233468999999999998863
No 108
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=1.7e-09 Score=106.75 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC----cc-cc--c-cCCcce------e--------cCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG----GA-WI--K-TVETTM------L--------QTPKQLYQ 59 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g----g~-~~--~-~~~~~~------l--------~~~~~~~~ 59 (418)
..+||+|||||++|+++|..|+++|++|+|||+.+.+. +. .+ . ...+.. + ..+...+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 36899999999999999999999999999999976431 10 00 0 000000 0 00000000
Q ss_pred -----------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 60 -----------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 60 -----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
|..............++..+.+.|.+.+++.++ .+.++++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA------------------- 143 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC-------------------
Confidence 000000000001123456777778887877788 789999999998765
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 144 ---~~v~v~~~~g-----~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 144 ---DRVRLRLDDG-----RRLEAALAIAADGAAS 169 (392)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEecCCCc
Confidence 4567776554 4799999999999885
No 109
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.05 E-value=5.2e-09 Score=100.45 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=67.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---cCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++++|||||++|++||..|++.|++++++|+++++||.... .+|.. .+++ --+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~-------dcs~----------------C~L 180 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTN-------DCSI----------------CIL 180 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCc-------ccch----------------hhc
Confidence 368999999999999999999999999999999999987444 22211 0000 112
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
...+.+..++-++ +++++++|.++...- +.|+|.++..
T Consensus 181 aP~m~~v~~hp~i--~l~TyaeV~ev~G~v----------------------GnF~vki~kk 218 (622)
T COG1148 181 APKMVEVSNHPNI--ELITYAEVEEVSGSV----------------------GNFTVKIEKK 218 (622)
T ss_pred cchhhhhccCCce--eeeeeeeeeeecccc----------------------cceEEEEecc
Confidence 2234555566677 788889999988765 6788888765
No 110
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.05 E-value=2.6e-09 Score=106.48 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=84.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc-------c----cCCcceecCCc------cccccCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI-------K----TVETTMLQTPK------QLYQFSD--- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~-------~----~~~~~~l~~~~------~~~~~~~--- 62 (418)
++||+|||||++|+++|..|+++|++|+|+|+.+.+|.... . ..+......|. ..+.+..
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 59999999999999999999999999999999876543211 0 11111000010 0011100
Q ss_pred ---CCCC-----CCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 ---YPWP-----DSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 ---~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..+. ... ......+..+.++|.+.+.+.|+ .++.+++|+++..++ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------g~ 140 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRD----------------------GK 140 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeC----------------------CE
Confidence 0111 000 11223577888889999988898 899999999988655 33
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+...++ .++.||.||+|+|..+
T Consensus 141 v~~v~~~g-----~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 141 VVGVEADG-----DVIEAKTVILADGVNS 164 (428)
T ss_pred EEEEEcCC-----cEEECCEEEEEeCCCH
Confidence 33222233 3789999999999875
No 111
>PRK09126 hypothetical protein; Provisional
Probab=99.05 E-value=2.2e-09 Score=105.94 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------c-c---ccc---cCC--cc----e--ecCCcccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------G-A---WIK---TVE--TT----M--LQTPKQLY 58 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------g-~---~~~---~~~--~~----~--l~~~~~~~ 58 (418)
|..+||+|||||++|+++|..|+++|++|+|+|+.+.+. | . +.. ... ++ . ...+...+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 778999999999999999999999999999999986421 1 1 000 000 00 0 00011111
Q ss_pred ccCCC------CCCC-----CCCCCCCChhHHHHHHHHHHH-hcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 59 QFSDY------PWPD-----SVTTDFPDHNQVLDYIQSYAS-HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 59 ~~~~~------~~~~-----~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
.+.+. .++. .......++..+.+.+.+.+. ..++ .+.++++|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~----------------- 141 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD----------------- 141 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC-----------------
Confidence 11000 0100 000111233445555544443 3567 799999999998765
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~ 167 (418)
+.+.|.+.++ .++.+|.||.|+|..|.....
T Consensus 142 -----~~~~v~~~~g-----~~~~a~~vI~AdG~~S~vr~~ 172 (392)
T PRK09126 142 -----DGAQVTLANG-----RRLTARLLVAADSRFSATRRQ 172 (392)
T ss_pred -----CeEEEEEcCC-----CEEEeCEEEEeCCCCchhhHh
Confidence 4466776554 479999999999988644443
No 112
>PLN02463 lycopene beta cyclase
Probab=99.02 E-value=2.7e-09 Score=106.27 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC-----CccccccCCccee------cCCccccccCC-CCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIKTVETTML------QTPKQLYQFSD-YPWPDSVT 70 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~-----gg~~~~~~~~~~l------~~~~~~~~~~~-~~~~~~~~ 70 (418)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. .+.|........+ ..+.....+.+ ........
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 579999999999999999999999999999996532 1233221110000 00110111110 00000111
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.....+..+.+++.+.+.+.++ ++. .++|.+++..+ +.+.|++.++ .++.
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~----------------------~~~~V~~~dG-----~~i~ 157 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE----------------------SKSLVVCDDG-----VKIQ 157 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC----------------------CeEEEEECCC-----CEEE
Confidence 2234677888888888877777 554 57899998765 4577877766 5899
Q ss_pred eCEEEEeeccCC
Q 014821 151 VDFVILCVGRFS 162 (418)
Q Consensus 151 ~d~vIlAtG~~~ 162 (418)
||.||.|+|..+
T Consensus 158 A~lVI~AdG~~s 169 (447)
T PLN02463 158 ASLVLDATGFSR 169 (447)
T ss_pred cCEEEECcCCCc
Confidence 999999999875
No 113
>PRK06126 hypothetical protein; Provisional
Probab=99.02 E-value=6.1e-09 Score=107.30 Aligned_cols=139 Identities=18% Similarity=0.271 Sum_probs=87.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---------cCCccee-------cCCc----c------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------TVETTML-------QTPK----Q------ 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---------~~~~~~l-------~~~~----~------ 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.....-.. .+..+-+ -.+. .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 579999999999999999999999999999998643211000 0000000 0000 0
Q ss_pred -----c--cccCCCC------------CCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccc
Q 014821 57 -----L--YQFSDYP------------WPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEK 116 (418)
Q Consensus 57 -----~--~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~ 116 (418)
. +.+.... +.........++..+...|.+.+.+. ++ .++++++|++++.++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~------- 157 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA------- 157 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC-------
Confidence 0 0000000 00000012234556777777777664 66 799999999998766
Q ss_pred cccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 117 SWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+..++++.+..++...++.+|+||.|+|..|...
T Consensus 158 ---------------~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 158 ---------------DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred ---------------CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence 4466777665556667899999999999986433
No 114
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=2.8e-09 Score=105.99 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=82.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-----ccccccCCc------cee-------cCCccccccCCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-----GAWIKTVET------TML-------QTPKQLYQFSDY- 63 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-----g~~~~~~~~------~~l-------~~~~~~~~~~~~- 63 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+... ....-...+ +-+ ..+...+.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4799999999999999999999999999999987542 111000000 000 001111111000
Q ss_pred -----CCCCC---C-C-CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 64 -----PWPDS---V-T-TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 64 -----~~~~~---~-~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
.+... . . .....+..+.+.|.+.+.+. ++ .+.+++++++++..+ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~----------------------~ 153 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQ----------------------D 153 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------------C
Confidence 00100 0 0 01112345666666666665 56 788899999998765 4
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
.+.|++.++ +...+++||.||.|+|..|..
T Consensus 154 ~~~v~~~~~--~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 154 AATVTLEIE--GKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred eeEEEEccC--CcceEEeeeEEEEeCCCCchh
Confidence 566776543 333579999999999998643
No 115
>PRK08244 hypothetical protein; Provisional
Probab=99.02 E-value=5.4e-09 Score=106.36 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=85.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc---cCCccee-------cCCccccccCC----
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK---TVETTML-------QTPKQLYQFSD---- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~---~~~~~~l-------~~~~~~~~~~~---- 62 (418)
++||+|||||++|+++|..|+++|++++|||+.+.+... +.. ....+-+ ..+...+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 389999999999999999999999999999998753210 000 0000000 00000011110
Q ss_pred CCCCC---CC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEE
Q 014821 63 YPWPD---SV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (418)
Q Consensus 63 ~~~~~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (418)
..+.. .. .....++..+.+.|.+.+++.+. .+.+++++++++..+ +..++++
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~~ 137 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG----------------------DGVEVVV 137 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC----------------------CeEEEEE
Confidence 11110 00 01123566778888888888888 899999999998765 4456666
Q ss_pred ecCCCCceeEEEeCEEEEeeccCCC
Q 014821 139 EDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 139 ~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+ + ..++++|+||.|.|..|.
T Consensus 138 ~~~~-g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 138 RGPD-G-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred EeCC-c-cEEEEeCEEEECCCCChH
Confidence 5432 2 357999999999999863
No 116
>PRK10015 oxidoreductase; Provisional
Probab=99.00 E-value=5.3e-09 Score=104.21 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=83.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc-------cc----cCCcceecCC------ccccccCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW-------IK----TVETTMLQTP------KQLYQFSD--- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~-------~~----~~~~~~l~~~------~~~~~~~~--- 62 (418)
++||+|||||++|+++|+.|+++|++|+|||+...+|..- .. ..+......| ...+.+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 5899999999999999999999999999999987654211 00 1111110000 01111100
Q ss_pred ---CCCCCC------CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 ---YPWPDS------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 ---~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..+... .......+..+.++|.+.+.+.+. .++.+++|+++...+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~ 140 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREG----------------------NK 140 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeC----------------------CE
Confidence 001100 011223567777888888888888 888999999987654 23
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.....++ .++.||.||+|+|..+
T Consensus 141 v~~v~~~~-----~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 141 VTGVQAGD-----DILEANVVILADGVNS 164 (429)
T ss_pred EEEEEeCC-----eEEECCEEEEccCcch
Confidence 33222222 4799999999999875
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.99 E-value=4.5e-09 Score=103.63 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=83.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-----cCCccee-----cCCccccccC--CCCCCCCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----TVETTML-----QTPKQLYQFS--DYPWPDSVTTD 72 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-----~~~~~~l-----~~~~~~~~~~--~~~~~~~~~~~ 72 (418)
||+|||||++|+++|..|++.|++|+|+|+++.+++.... ..+...+ +.-...+.+. ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999998877653211 1111100 0000001111 11100000111
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeC
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d 152 (418)
...+..+.+++.+.+.+.++ .+ +.++|.++.... .+.+.|++.++ .++.|+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~a~ 131 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADG---------------------VALSTVYCAGG-----QRIQAR 131 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecC---------------------CceeEEEeCCC-----CEEEeC
Confidence 24567888888888887776 45 467888887763 25577877665 589999
Q ss_pred EEEEeeccCC
Q 014821 153 FVILCVGRFS 162 (418)
Q Consensus 153 ~vIlAtG~~~ 162 (418)
.||.|+|..|
T Consensus 132 ~VI~A~G~~s 141 (388)
T TIGR01790 132 LVIDARGFGP 141 (388)
T ss_pred EEEECCCCch
Confidence 9999999874
No 118
>PRK07190 hypothetical protein; Provisional
Probab=98.97 E-value=8.4e-09 Score=104.30 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--cCCcc-------ee-------cCCcccc------c
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETT-------ML-------QTPKQLY------Q 59 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--~~~~~-------~l-------~~~~~~~------~ 59 (418)
+.+||+|||||++|+++|..|+++|++++|||+.+.+...-+. ..+.. -+ ..+.... .
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 4689999999999999999999999999999998754321110 00000 00 0000000 0
Q ss_pred cC--CCC-CC--CCC---CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 60 FS--DYP-WP--DSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 60 ~~--~~~-~~--~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
+. ... +. ... .....++..+...|.+.+.++++ .+.++++|++++..+
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~---------------------- 139 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQ---------------------- 139 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcC----------------------
Confidence 00 000 00 000 01112455677788888888888 899999999998876
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.+.+.++ .++.|++||.|+|..|....
T Consensus 140 ~~v~v~~~~g-----~~v~a~~vVgADG~~S~vR~ 169 (487)
T PRK07190 140 AGCLTTLSNG-----ERIQSRYVIGADGSRSFVRN 169 (487)
T ss_pred CeeEEEECCC-----cEEEeCEEEECCCCCHHHHH
Confidence 3455665443 48999999999999863333
No 119
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.97 E-value=6.6e-09 Score=102.31 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=81.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc--------ccc---------cCCccee--cCCccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA--------WIK---------TVETTML--QTPKQL 57 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~--------~~~---------~~~~~~l--~~~~~~ 57 (418)
|+.+||+|||||++|+++|..|++.|++|+|||+.+.. .+. +.. ..+.+.- ..+...
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 87899999999999999999999999999999986411 000 000 0000000 001000
Q ss_pred cc----------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 58 YQ----------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 58 ~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
+. |...............+..+...|.+.+... ++ .+.++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~----------------- 141 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSA----------------- 141 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcC-----------------
Confidence 00 0000000000001112334444454444444 45 788899999998866
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.++|++.++ .++.+|.||.|+|..|....
T Consensus 142 -----~~~~v~~~~g-----~~~~~~lvIgADG~~S~vR~ 171 (384)
T PRK08849 142 -----EGNRVTLESG-----AEIEAKWVIGADGANSQVRQ 171 (384)
T ss_pred -----CeEEEEECCC-----CEEEeeEEEEecCCCchhHH
Confidence 4567877765 58999999999999864333
No 120
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.96 E-value=5.8e-09 Score=103.32 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=84.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCcc--------ccc---cCCccee-------cCCccccccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGA--------WIK---TVETTML-------QTPKQLYQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~--------~~~---~~~~~~l-------~~~~~~~~~~~ 62 (418)
++||+|||||++|+++|..|+++| ++|+|||+.+..... +.. ....+-+ ..+...+.+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 489999999999999999999985 999999997642110 000 0000000 00111111100
Q ss_pred -----------CCCCC----CC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 63 -----------YPWPD----SV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 63 -----------~~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
..+.. .. ......+..+.+.|.+.+.+.++ .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------- 141 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRD----------------- 141 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC-----------------
Confidence 00000 00 01124567888888888888888 899999999998766
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|.+.++ .++.||.||.|+|..|.
T Consensus 142 -----~~v~v~~~~g-----~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 142 -----EGVTVTLSDG-----SVLEARLLVAADGARSK 168 (403)
T ss_pred -----CEEEEEECCC-----CEEEeCEEEEcCCCChH
Confidence 4566776554 47999999999998753
No 121
>PRK06753 hypothetical protein; Provisional
Probab=98.96 E-value=7.4e-09 Score=101.49 Aligned_cols=128 Identities=24% Similarity=0.246 Sum_probs=79.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---c--------CCcc--e---ecCCccccccC------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---T--------VETT--M---LQTPKQLYQFS------ 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~--------~~~~--~---l~~~~~~~~~~------ 61 (418)
++|+|||||++|+++|..|+++|++++|+|+++.+...... . ..++ . ...+...+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 47999999999999999999999999999998754311000 0 0000 0 00011111111
Q ss_pred --CCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe
Q 014821 62 --DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (418)
Q Consensus 62 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (418)
..++.........++..+.+.|.+.+. .. .++++++|++++..+ +.+.|++.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~----------------------~~v~v~~~ 134 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--ED--AIFTGKEVTKIENET----------------------DKVTIHFA 134 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--Cc--eEEECCEEEEEEecC----------------------CcEEEEEC
Confidence 011111101122355666666665543 23 688999999998655 55777776
Q ss_pred cCCCCceeEEEeCEEEEeeccCC
Q 014821 140 DAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 140 ~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++ .++.+|.||.|.|..|
T Consensus 135 ~g-----~~~~~~~vigadG~~S 152 (373)
T PRK06753 135 DG-----ESEAFDLCIGADGIHS 152 (373)
T ss_pred CC-----CEEecCEEEECCCcch
Confidence 65 4789999999999886
No 122
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.96 E-value=6.3e-09 Score=103.17 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC-CCC--Ccc--------ccc---------cCCccee--cCCcccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDI--GGA--------WIK---------TVETTML--QTPKQLY 58 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~-~~~--gg~--------~~~---------~~~~~~l--~~~~~~~ 58 (418)
|..+||+|||||++|+++|..|+++|++++|+|+. +.. +.. ... ..+.+.- ..+...+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 56789999999999999999999999999999996 211 110 000 0000000 0011111
Q ss_pred ccCCC------CCCCCC--C---CCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 59 QFSDY------PWPDSV--T---TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 59 ~~~~~------~~~~~~--~---~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
.+.+. .+.... . .....+..+.+.|.+.+.+. ++ .+.++++|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------- 142 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGE----------------- 142 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeC-----------------
Confidence 11000 000000 0 01112344555566655554 46 788899999998765
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.|++.++ .++.+|.||.|.|..|...+
T Consensus 143 -----~~~~v~~~~g-----~~~~a~lvIgADG~~S~vR~ 172 (405)
T PRK08850 143 -----SEAWLTLDNG-----QALTAKLVVGADGANSWLRR 172 (405)
T ss_pred -----CeEEEEECCC-----CEEEeCEEEEeCCCCChhHH
Confidence 4466777655 58999999999998864433
No 123
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.94 E-value=6.8e-09 Score=102.08 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=82.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--------cccc------------CCcce--ecCCcccccc-C
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--------WIKT------------VETTM--LQTPKQLYQF-S 61 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--------~~~~------------~~~~~--l~~~~~~~~~-~ 61 (418)
||+|||||++|+++|..|+++|++|+|+|+.+.++.. ..-. .+.+. ...+...+.+ .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999998754210 0000 00000 0000000000 0
Q ss_pred C-----CCCCCC-----CCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 62 D-----YPWPDS-----VTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 62 ~-----~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
. ..+... ......++..+.+.|.+.+.+.+ . .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~--------------------- 137 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS--------------------- 137 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---------------------
Confidence 0 001100 01122356677777888777776 6 789999999998765
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+...++ .++.+|.||.|+|..|
T Consensus 138 -~~~~v~~~~g-----~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 138 -DHVELTLDDG-----QQLRARLLVGADGANS 163 (385)
T ss_pred -CeeEEEECCC-----CEEEeeEEEEeCCCCC
Confidence 4566766655 4799999999999885
No 124
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.94 E-value=7.4e-09 Score=102.26 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC---CCceEEEeeCCCC---Cc--------cccc---------cCCccee-cCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDI---GG--------AWIK---------TVETTML-QTPKQ 56 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~---~~~v~iie~~~~~---gg--------~~~~---------~~~~~~l-~~~~~ 56 (418)
|.++||+|||||++|+++|..|+++ |++|+|||+.... +. .+.. ..+.+.- ..+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 8899999999999999999999998 9999999995211 00 0000 0000000 00000
Q ss_pred ccccCCC------CCCC---CC--CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCC
Q 014821 57 LYQFSDY------PWPD---SV--TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124 (418)
Q Consensus 57 ~~~~~~~------~~~~---~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 124 (418)
.+.+.+. .+.. .. ......+..+.+.+.+.+... +. .+.++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--------------- 143 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--------------- 143 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC---------------
Confidence 0000000 0000 00 001123445556666655553 56 788899999998755
Q ss_pred CCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 125 GQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 144 -------~~~~v~~~~g-----~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 144 -------GSVRVTLDDG-----ETLTGRLLVAADGSHS 169 (395)
T ss_pred -------CeEEEEECCC-----CEEEeCEEEEecCCCh
Confidence 5577777655 4789999999999875
No 125
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.93 E-value=9.6e-09 Score=101.88 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=82.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC-------------ccccc----c------CCcce--ecCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-------------GAWIK----T------VETTM--LQTPKQL 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g-------------g~~~~----~------~~~~~--l~~~~~~ 57 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+... ..... . .+.+. ...+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 3799999999999999999999999999999975210 00000 0 00000 0001111
Q ss_pred cccCC------CCCCCC-----CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 58 YQFSD------YPWPDS-----VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 58 ~~~~~------~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
+.+.+ ..+... ......++..+.+.|.+.+.+.++ ++++++++++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------- 142 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG----------------- 142 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC-----------------
Confidence 11100 000000 001112344556666666666677 788999999998766
Q ss_pred CCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.|++.++ .++.+|.||.|+|..|....
T Consensus 143 -----~~v~v~~~~g-----~~~~a~~vVgAdG~~S~vR~ 172 (405)
T PRK05714 143 -----DDWLLTLADG-----RQLRAPLVVAADGANSAVRR 172 (405)
T ss_pred -----CeEEEEECCC-----CEEEeCEEEEecCCCchhHH
Confidence 4577777655 57999999999999864333
No 126
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.93 E-value=1e-08 Score=100.98 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=81.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc---cccccC-------------Ccce--e----cCCcccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG---AWIKTV-------------ETTM--L----QTPKQLYQF 60 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg---~~~~~~-------------~~~~--l----~~~~~~~~~ 60 (418)
++||+|||||++|+++|..|++.|++|+|+|+.+.+.. .|..+. -++. + ..+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999999876421 121100 0000 0 001111111
Q ss_pred CCC-----CCC---CCC-CC-CCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 61 SDY-----PWP---DSV-TT-DFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 61 ~~~-----~~~---~~~-~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
... .+. ... .. ....+..+.+.|.+.+.+.+ + .++ ++++++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~-------------------- 141 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDP-------------------- 141 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecC--------------------
Confidence 100 000 000 00 11235677777877777766 5 566 88899987665
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|++.++ .++.+|.||.|+|..|.
T Consensus 142 --~~~~v~~~~g-----~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 142 --DAATLTLADG-----QVLRADLVVGADGAHSW 168 (388)
T ss_pred --CeEEEEECCC-----CEEEeeEEEEeCCCCch
Confidence 4567776655 47999999999998853
No 127
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.92 E-value=8.1e-09 Score=101.90 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=81.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc---------------------cccc-----CCcceec
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA---------------------WIKT-----VETTMLQ 52 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~---------------------~~~~-----~~~~~l~ 52 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.. ++. |... .+-..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 589999999999999999999999999999997521 110 1000 0000000
Q ss_pred ---CCccccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCC
Q 014821 53 ---TPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (418)
Q Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (418)
.......+...............+..+.+.|.+.+... ++ .+.++++++++...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDD------------------- 143 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcC-------------------
Confidence 00000001000000000011134566777777776665 66 788889999998765
Q ss_pred CCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+.|.+.++ .++.+|.||.|+|..|.
T Consensus 144 ---~~~~v~~~~g-----~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 144 ---DGWELTLADG-----EEIQAKLVIGADGANSQ 170 (391)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEeCCCCch
Confidence 4577776654 47999999999999863
No 128
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7.7e-09 Score=89.83 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=90.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCcccc-ccCCCCCCCCCCCCC-CChhH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLY-QFSDYPWPDSVTTDF-PDHNQ 78 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 78 (418)
.||+||||||+||+||++|++.|.+++|||++-.+|| .|-- .++...++.|+..+ .=...++.+.....+ .+..+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 5999999999999999999999999999999988865 5665 66666666665432 111222222112112 24456
Q ss_pred HHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEee
Q 014821 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (418)
Q Consensus 79 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAt 158 (418)
+...+...+-+.+. +++....|+++...+ +.++++. --.|+.....+-.-...++++++||-||
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~--~~rVaGv------------VvNWt~V~~~~lhvDPl~i~a~~VvDaT 174 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRD--DPRVAGV------------VVNWTPVQMAGLHVDPLTIRAKAVVDAT 174 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEec--CCceEEE------------EEecchhhhcccccCcceeeEEEEEeCC
Confidence 66666666666787 788888999988766 1111100 0123322221111123589999999999
Q ss_pred ccC
Q 014821 159 GRF 161 (418)
Q Consensus 159 G~~ 161 (418)
|..
T Consensus 175 GHd 177 (262)
T COG1635 175 GHD 177 (262)
T ss_pred CCc
Confidence 965
No 129
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.92 E-value=1.1e-08 Score=100.80 Aligned_cols=132 Identities=21% Similarity=0.265 Sum_probs=86.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccccc---c------CCccee-------cC-Cccc-------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIK---T------VETTML-------QT-PKQL------- 57 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~~~---~------~~~~~l-------~~-~~~~------- 57 (418)
.+||+|||||++|+++|..|++.|++|+|||+.+ .+-..-+. . ...+-+ .. +...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 5899999999999999999999999999999972 21100000 0 000000 00 1111
Q ss_pred ---cccCCCCCCCCCCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 58 ---YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 58 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
..|..............++..+...|.+.+...+ + ++.++++|+.++.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~----------------------~~ 137 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDG----------------------DG 137 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcC----------------------Cc
Confidence 1111111111112233467788888888888765 6 799999999999887 44
Q ss_pred eEEEEe-cCCCCceeEEEeCEEEEeeccCCC
Q 014821 134 WTVAVE-DAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 134 ~~v~~~-~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..+++. ++ +++.||.||-|.|.+|.
T Consensus 138 v~v~l~~dG-----~~~~a~llVgADG~~S~ 163 (387)
T COG0654 138 VTVTLSFDG-----ETLDADLLVGADGANSA 163 (387)
T ss_pred eEEEEcCCC-----cEEecCEEEECCCCchH
Confidence 567776 55 49999999999999873
No 130
>PRK07236 hypothetical protein; Provisional
Probab=98.92 E-value=8.5e-09 Score=101.61 Aligned_cols=133 Identities=19% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Ccc---ccc---cC------CcceecCCccccccCCC-
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA---WIK---TV------ETTMLQTPKQLYQFSDY- 63 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~---~~~---~~------~~~~l~~~~~~~~~~~~- 63 (418)
|+.++|+|||||++|+++|..|+++|++++|+|+.+.. |.. +.. .. +......+.....+...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 67789999999999999999999999999999997632 111 000 00 00000001111111000
Q ss_pred --CCCC-CCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 64 --PWPD-SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 64 --~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
.... ........+..+.+.|. +.+... .++++++|++++..+ +.++|++.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~-~i~~~~~v~~i~~~~----------------------~~v~v~~~~ 137 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALR---AAFPAE-RYHLGETLVGFEQDG----------------------DRVTARFAD 137 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHH---HhCCCc-EEEcCCEEEEEEecC----------------------CeEEEEECC
Confidence 0000 00001112333333332 333321 588999999998765 457777776
Q ss_pred CCCCceeEEEeCEEEEeeccCCCC
Q 014821 141 AKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 141 ~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
+ .++.+|.||.|.|..|..
T Consensus 138 g-----~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 138 G-----RRETADLLVGADGGRSTV 156 (386)
T ss_pred C-----CEEEeCEEEECCCCCchH
Confidence 5 589999999999998633
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.92 E-value=8.6e-09 Score=101.90 Aligned_cols=132 Identities=21% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc------ccc------c---CCcce-ecCCccccccCC---
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK------T---VETTM-LQTPKQLYQFSD--- 62 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~------~~~------~---~~~~~-l~~~~~~~~~~~--- 62 (418)
..+||+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. . .+.+. ...+...+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3579999999999999999999999999999998755321 000 0 00000 000011111100
Q ss_pred ------CCCCC------CCCCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCC
Q 014821 63 ------YPWPD------SVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (418)
Q Consensus 63 ------~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (418)
.+... ........+..+.+.|.+.+.+.+ + ++++++++++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~-------------------- 140 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDG-------------------- 140 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCC--------------------
Confidence 00100 000012356667777777776654 5 688889999998655
Q ss_pred CCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+.+.++ .++.+|.||.|+|..|
T Consensus 141 --~~v~v~~~~g-----~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 141 --DGVTVFDQQG-----NRWTGDALIGCDGVKS 166 (396)
T ss_pred --CceEEEEcCC-----CEEecCEEEECCCcCh
Confidence 4466766555 4799999999999885
No 132
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.92 E-value=2e-08 Score=99.29 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc--------c-----------CCcceecCCcccc-ccCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--------T-----------VETTMLQTPKQLY-QFSDY 63 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~--------~-----------~~~~~l~~~~~~~-~~~~~ 63 (418)
+||+||||||+|+++|+.|++.|++|+|+|+....+..+.. . ..+..+..|.... .+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~- 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR- 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc-
Confidence 58999999999999999999999999999997643211110 0 0011111111100 0000
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-
Q 014821 64 PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK- 142 (418)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 142 (418)
...........++..+.++|...+.+.|. .+... .+.++..... .++.+.|++...+
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-------------------~~~~~~v~~~~~~~ 137 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-------------------ADDPYTLHYISSDS 137 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-------------------CCceEEEEEeeccc
Confidence 01100001125778888899999988888 67554 5777654220 0234666653221
Q ss_pred ---CCceeEEEeCEEEEeeccCCCCCC
Q 014821 143 ---NHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 143 ---~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.+...++.++.||.|+|..|....
T Consensus 138 ~~~~g~~~~i~a~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 138 GGPSGTRCTLEVDAVIGADGANSRVAK 164 (398)
T ss_pred cccCCCccEEEeCEEEECCCcchHHHH
Confidence 133458999999999998864433
No 133
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.91 E-value=3.1e-08 Score=102.13 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=84.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc---cCC-----------------cceec------CCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---TVE-----------------TTMLQ------TPKQ 56 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~---~~~-----------------~~~l~------~~~~ 56 (418)
.+||+|||||++|+++|..|+++|++++|||+.+.+....+. ... +.... ....
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 579999999999999999999999999999998755321110 000 00000 0000
Q ss_pred ccccCCCCCCCC-C-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 57 LYQFSDYPWPDS-V-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 57 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
...+...+.... . .....++..+..+|.+.+.+. +. .+.+++++++++.++ +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------------~~ 158 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHD----------------------DG 158 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcC----------------------CE
Confidence 011110000000 0 011134556778888877775 56 789999999998766 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+.+++.+.+ ...++.+|+||.|+|..|.
T Consensus 159 v~v~~~~~~--g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 159 VTLTVETPD--GPYTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEEECCC--CcEEEEeCEEEECCCCCcH
Confidence 666665431 2357999999999998863
No 134
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.91 E-value=2.3e-08 Score=98.75 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=79.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC------Ccc--ccc------cC---Ccce-ecCCccccccC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GGA--WIK------TV---ETTM-LQTPKQLYQFS--- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~------gg~--~~~------~~---~~~~-l~~~~~~~~~~--- 61 (418)
++||+|||||++|+++|..|+++|++++|+|+.+.. +.. +.. .. +.+. ...+...+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 589999999999999999999999999999998641 110 000 00 0000 00011111110
Q ss_pred ---CCCCCCCC---CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE
Q 014821 62 ---DYPWPDSV---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (418)
Q Consensus 62 ---~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (418)
..++.... .....++..+.+.|.+.+...+. .+.+++++++++... +....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------------~~~~~ 138 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------------SDRPY 138 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------------CCceE
Confidence 01111100 00111234555555555556677 799999999987622 12334
Q ss_pred EEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 136 v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
|++.. +|...++.+|.||.|.|..|..
T Consensus 139 V~~~~--~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 139 VTYEK--DGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred EEEEc--CCeEEEEEeCEEEECCCCCCch
Confidence 55532 2445689999999999999643
No 135
>PRK07588 hypothetical protein; Provisional
Probab=98.91 E-value=1.2e-08 Score=100.62 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=80.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c-cccccCCcce----------e---cCCccccccC------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G-AWIKTVETTM----------L---QTPKQLYQFS------ 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g-~~~~~~~~~~----------l---~~~~~~~~~~------ 61 (418)
+||+|||||++|+++|..|+++|++|+|+|+.+... + .+.....+.. + ..+...+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 489999999999999999999999999999987542 1 1110000000 0 0000011110
Q ss_pred --CCC---CCCCC--CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 62 --DYP---WPDSV--TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 62 --~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.++ ..... .....++..+...|.+.... +. +++++++|++++..+ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~----------------------~~v 135 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHR----------------------DGV 135 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECC----------------------CeE
Confidence 000 00000 00123455566555554432 45 799999999998766 557
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+|++.++ .++.+|.||.|.|..|....
T Consensus 136 ~v~~~~g-----~~~~~d~vIgADG~~S~vR~ 162 (391)
T PRK07588 136 RVTFERG-----TPRDFDLVIGADGLHSHVRR 162 (391)
T ss_pred EEEECCC-----CEEEeCEEEECCCCCccchh
Confidence 7777665 46899999999999864443
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=98.91 E-value=2.2e-08 Score=97.29 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=81.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---------ccccc----cC-------CcceecCCc----ccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---------GAWIK----TV-------ETTMLQTPK----QLY 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---------g~~~~----~~-------~~~~l~~~~----~~~ 58 (418)
++||+|||||++|+++|..|+++ ++|+++|+.+..+ +.... .. +...+..+. ...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 38999999999999999999999 9999999976431 11110 00 000000000 000
Q ss_pred ccCCCCCCCCC--CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE
Q 014821 59 QFSDYPWPDSV--TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (418)
Q Consensus 59 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (418)
.+.. +....+ .....++..+.+.+.+.+ ..++ .+.+++.+.+++..+ +.|.|
T Consensus 80 ~~~~-~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~----------------------~~~~v 133 (351)
T PRK11445 80 DLAN-SLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRED----------------------DGYHV 133 (351)
T ss_pred cccc-cchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcC----------------------CEEEE
Confidence 0100 000000 111245677777777643 4466 788999999998766 45777
Q ss_pred EEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 137 AVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 137 ~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..... +...++.||.||.|+|..|.
T Consensus 134 ~~~~~--g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 134 IFRAD--GWEQHITARYLVGADGANSM 158 (351)
T ss_pred EEecC--CcEEEEEeCEEEECCCCCcH
Confidence 75332 33347999999999999863
No 137
>PRK06185 hypothetical protein; Provisional
Probab=98.87 E-value=2.7e-08 Score=98.78 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=81.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC-----Cccccc-------c---CCcce--ecCCccccc------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIK-------T---VETTM--LQTPKQLYQ------ 59 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~-----gg~~~~-------~---~~~~~--l~~~~~~~~------ 59 (418)
.+||+|||||++|+++|..|+++|++|+|+|+++.. +..+.. . .+.+. -..+...++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 589999999999999999999999999999997532 111110 0 00000 000000111
Q ss_pred ------cCCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 60 ------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 60 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
|...+.+. ....+.++..+.+.|.+.+.+. ++ .+.++++|+++...+ +.
T Consensus 86 ~~~~~~~~~~~~~~-~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------------~~ 141 (407)
T PRK06185 86 TVTLADFSRLPTPY-PYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------------GR 141 (407)
T ss_pred EEEecchhhcCCCC-CcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------------CE
Confidence 11111100 0112345667778887777665 66 788899999998765 12
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...|.+... +...++.+|.||.|+|..|
T Consensus 142 v~~v~~~~~--~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 142 VTGVRARTP--DGPGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEEEEEcC--CCcEEEEeCEEEECCCCch
Confidence 222444432 1225799999999999986
No 138
>PRK07045 putative monooxygenase; Reviewed
Probab=98.86 E-value=3.9e-08 Score=97.00 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=83.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCccee-----------c---CCcccccc-C--
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTML-----------Q---TPKQLYQF-S-- 61 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~l-----------~---~~~~~~~~-~-- 61 (418)
.++||+|||||++|+++|..|+++|++++|+|+.+.+. +.-.-...+..+ . .+...+.+ .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 46899999999999999999999999999999988541 110000000000 0 00000000 0
Q ss_pred ----CCCCCCCCCCC---CCChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC-
Q 014821 62 ----DYPWPDSVTTD---FPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG- 132 (418)
Q Consensus 62 ----~~~~~~~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (418)
..++....... ..++..+.+.|.+.+.. .+. ++.+++++++++..+ ++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---------------------~~~ 140 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---------------------DGT 140 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---------------------CCc
Confidence 01111100011 13455666767666554 356 799999999998865 12
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.+.|++.++ .++.+|.||.|+|..|...+
T Consensus 141 ~~~v~~~~g-----~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 141 VTSVTLSDG-----ERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred EEEEEeCCC-----CEEECCEEEECCCCChHHHH
Confidence 245666544 47999999999999864433
No 139
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.85 E-value=1.3e-08 Score=98.57 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE-EEEecCCCCceeEEEeCE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~i~~d~ 153 (418)
....+.+.+...+.+.|. .++.+++|++++... +.|+ |.+.++ .+.+|.
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~gv~~~~g------~i~ad~ 194 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDG----------------------GRVTGVRTSDG------EIRADR 194 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEET----------------------TEEEEEEETTE------EEEECE
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcc----------------------ccccccccccc------ccccce
Confidence 467788888888888998 899999999999987 5577 887776 499999
Q ss_pred EEEeeccCC
Q 014821 154 VILCVGRFS 162 (418)
Q Consensus 154 vIlAtG~~~ 162 (418)
||+|+|.++
T Consensus 195 vV~a~G~~s 203 (358)
T PF01266_consen 195 VVLAAGAWS 203 (358)
T ss_dssp EEE--GGGH
T ss_pred eEecccccc
Confidence 999999873
No 140
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.85 E-value=2.7e-08 Score=97.58 Aligned_cols=132 Identities=18% Similarity=0.217 Sum_probs=81.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-------cC------------Ccce-ecCCccccccCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-------TV------------ETTM-LQTPKQLYQFSD- 62 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-------~~------------~~~~-l~~~~~~~~~~~- 62 (418)
.||+|||||++|+++|..|++.|++|+|+|+.+.....+.. .. +.+. ...+...+.+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 79999999999999999999999999999986321110000 00 0000 000111111100
Q ss_pred -------CCCCCCC-CCCCCChhHHHHHHHHHHHhcC-cccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 63 -------YPWPDSV-TTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 63 -------~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
++..... ......+..+.+.|.+.+.+.+ . .++++++++++...+ +.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~----------------------~~ 137 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHN----------------------DY 137 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcC----------------------Ce
Confidence 0000000 1122357778888888877765 5 678889999998765 44
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeeccCCCCC
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFSDVP 165 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p 165 (418)
+.|.+.++ ++.+|.||.|.|..|...
T Consensus 138 v~v~~~~~------~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 138 SIIKFDDK------QIKCNLLIICDGANSKVR 163 (374)
T ss_pred EEEEEcCC------EEeeCEEEEeCCCCchhH
Confidence 66666432 799999999999986443
No 141
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.84 E-value=3.6e-08 Score=96.74 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|+++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 6789999999999999999999999999999999753
No 142
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.84 E-value=4e-09 Score=92.13 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=78.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc-cccc--cCCcceecCCccccc-cCCCCCCCCCCCCC-CChh
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLYQ-FSDYPWPDSVTTDF-PDHN 77 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 77 (418)
.+||+||||||+||++|+.|++.|+++++||++..+|| .|.- .++...++.|...+- =...++.......| .+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 48999999999999999999999999999999988886 4655 666666666654321 00111111111122 2456
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
++...|...+-+.|. +++-...|+++...+ +.++.+. --.|+.....+-.-...+++++.||-|
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~--~~rV~Gv------------ViNWt~V~~~glHvDPl~i~ak~ViDa 160 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIVRE--DDRVAGV------------VINWTPVEMAGLHVDPLTIRAKVVIDA 160 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEEEC--SCEEEEE------------EEEEHHHHTT--T-B-EEEEESEEEE-
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc--CCeEEEE------------EEEehHHhHhhcCCCcceEEEeEEEeC
Confidence 666776666666787 777777888887655 1111000 001111111111122368999999999
Q ss_pred eccC
Q 014821 158 VGRF 161 (418)
Q Consensus 158 tG~~ 161 (418)
||.-
T Consensus 161 TGHd 164 (230)
T PF01946_consen 161 TGHD 164 (230)
T ss_dssp --SS
T ss_pred CCCc
Confidence 9965
No 143
>PRK07538 hypothetical protein; Provisional
Probab=98.84 E-value=3.8e-08 Score=97.91 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=84.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCcce------e-------cCCccccccCC-----
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTM------L-------QTPKQLYQFSD----- 62 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~------l-------~~~~~~~~~~~----- 62 (418)
+||+|||||++|+++|..|+++|++++|||+.+.+. ....-....+. + ..+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987542 11100000000 0 00111111110
Q ss_pred ---CCCCC--C--CCCCCCChhHHHHHHHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 63 ---YPWPD--S--VTTDFPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 63 ---~~~~~--~--~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.+... . +......+..+.+.|.+.+.+ .+.. .++++++|++++.+. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~----------------------~~~ 137 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA----------------------DVT 137 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC----------------------Cce
Confidence 00000 0 001113566777777666544 4531 589999999998765 335
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDV 164 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~ 164 (418)
.+.+.++.++...++.+|.||.|.|..|..
T Consensus 138 ~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 138 VVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred EEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 566655544556789999999999998643
No 144
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.84 E-value=5e-08 Score=97.61 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=82.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC----Cccccc----c--C---------CcceecCCccc-cccCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGAWIK----T--V---------ETTMLQTPKQL-YQFSD 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~----gg~~~~----~--~---------~~~~l~~~~~~-~~~~~ 62 (418)
++||+||||||+|+++|..|+++|++|+|+|+.... |+.... . . .+.++..|... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 589999999999999999999999999999987531 221110 0 0 01111111110 00000
Q ss_pred CCCCCCCCCC--CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEec
Q 014821 63 YPWPDSVTTD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (418)
Q Consensus 63 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (418)
. ... ... ..++..+.++|.+.+.+.|. ++.. ..+.+++.... .++.+.|++.+
T Consensus 119 ~-~~~--~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~-~~v~~i~~~~~-------------------~~~~~~v~~~~ 173 (450)
T PLN00093 119 T-LKP--HEYIGMVRREVLDSFLRERAQSNGA--TLIN-GLFTRIDVPKD-------------------PNGPYVIHYTS 173 (450)
T ss_pred c-CCC--CCeEEEecHHHHHHHHHHHHHHCCC--EEEe-ceEEEEEeccC-------------------CCCcEEEEEEe
Confidence 0 000 111 15788888899998888887 6654 46777764320 01346666643
Q ss_pred C----CCCceeEEEeCEEEEeeccCCC
Q 014821 141 A----KNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 141 ~----~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
. .+++..++++|.||.|+|..|.
T Consensus 174 ~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 174 YDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred ccccccCCCccEEEeCEEEEcCCcchH
Confidence 2 1133468999999999998863
No 145
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.84 E-value=2.4e-08 Score=98.22 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=81.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccc------cccCCc-c------ee-------cCCccccccCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAW------IKTVET-T------ML-------QTPKQLYQFSDY 63 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~------~~~~~~-~------~l-------~~~~~~~~~~~~ 63 (418)
||+|||||++|+++|..|+++| ++|+|+|+.+.+...- ....+. . .+ ..+...+.+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 9999999976432100 000000 0 00 001111111100
Q ss_pred ------CCC--C-CC--CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 64 ------PWP--D-SV--TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 64 ------~~~--~-~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
.+. . .. ......+..+.+.|.+.+... ++ +++++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---------------------- 136 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---------------------- 136 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC----------------------
Confidence 000 0 00 001134567778888877774 77 788899999998765
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.++|++.++ .++.||.||.|.|..|
T Consensus 137 ~~~~v~~~~g-----~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 137 DYVRVTLDNG-----QQLRAKLLIAADGANS 162 (382)
T ss_pred CeEEEEECCC-----CEEEeeEEEEecCCCh
Confidence 4577776554 4799999999999885
No 146
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.83 E-value=2e-08 Score=89.94 Aligned_cols=127 Identities=24% Similarity=0.378 Sum_probs=81.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCcc--------------------------
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQ-------------------------- 56 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~~-------------------------- 56 (418)
.+|+|||+|++|+++|..|+..|++|+||||...+||.... +.++....--+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 57999999999999999999999999999999999997766 333322211110
Q ss_pred --ccccCCCCCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 014821 57 --LYQFSDYPWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (418)
Q Consensus 57 --~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418)
.+.|..-..++. ....|.-...+....+ ++. .++ ++.++++|+.+-..+ +.
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak-~LA-tdL--~V~~~~rVt~v~~~~----------------------~~ 135 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAK-FLA-TDL--TVVLETRVTEVARTD----------------------ND 135 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHH-HHh-ccc--hhhhhhhhhhheecC----------------------Ce
Confidence 111111100000 0011221122222222 221 255 788999999998876 78
Q ss_pred eEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 134 WTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 134 ~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
|++++.++. ....+|.||||.-+
T Consensus 136 W~l~~~~g~----~~~~~d~vvla~PA 158 (331)
T COG3380 136 WTLHTDDGT----RHTQFDDVVLAIPA 158 (331)
T ss_pred eEEEecCCC----cccccceEEEecCC
Confidence 999997764 57889999999864
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=4.1e-08 Score=96.97 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=82.3
Q ss_pred EEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceec-----CCccc---------------cccC-----
Q 014821 7 AIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQ-----TPKQL---------------YQFS----- 61 (418)
Q Consensus 7 vIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~-----~~~~~---------------~~~~----- 61 (418)
+|||||++|+++|..|+++|.+|+|+|+++.+|+.+...-.+ +++ ..... ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~g-rcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGG-RCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCc-eEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 699999999999999999999999999999887654321100 000 00000 0000
Q ss_pred ------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 62 ------DYPWPD-SVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 62 ------~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
..++.. .....|| ....+.+.+...+++.++ .+.++++|++++...
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---------------------- 135 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---------------------- 135 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC----------------------
Confidence 000100 0012232 346778888888888888 899999999997655
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.|.+.+. + .++.+|.||+|+|..
T Consensus 136 ~~~~v~~~-~-----~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 136 NGFGVETS-G-----GEYEADKVILATGGL 159 (400)
T ss_pred CeEEEEEC-C-----cEEEcCEEEECCCCc
Confidence 45666652 2 368999999999987
No 148
>PLN02697 lycopene epsilon cyclase
Probab=98.83 E-value=3.3e-08 Score=100.18 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=82.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC---CccccccCCcceecC------CccccccCCC-CCCCCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GGAWIKTVETTMLQT------PKQLYQFSDY-PWPDSVTTD 72 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~---gg~~~~~~~~~~l~~------~~~~~~~~~~-~~~~~~~~~ 72 (418)
.+||+|||||++|+++|..|++.|++|+++|+...+ .|.|......+.+.. +.....+.+. +........
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg 187 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYG 187 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCccc
Confidence 589999999999999999999999999999986433 234443211111100 0000011110 000000112
Q ss_pred CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEE-EEecCCCCceeEEEe
Q 014821 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV-AVEDAKNHSTEVHQV 151 (418)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~i~~ 151 (418)
...+..+.+.+.+.+.+.++ .+ ++++|+++...+ +.+.+ .+.++ .++.+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~----------------------~~~~vv~~~dG-----~~i~A 237 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS----------------------DGLRLVACEDG-----RVIPC 237 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC----------------------CcEEEEEEcCC-----cEEEC
Confidence 25677788888888777787 55 678999988765 33443 33444 57999
Q ss_pred CEEEEeeccCC
Q 014821 152 DFVILCVGRFS 162 (418)
Q Consensus 152 d~vIlAtG~~~ 162 (418)
+.||+|+|..|
T Consensus 238 ~lVI~AdG~~S 248 (529)
T PLN02697 238 RLATVASGAAS 248 (529)
T ss_pred CEEEECCCcCh
Confidence 99999999985
No 149
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.82 E-value=4.7e-08 Score=99.52 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+.+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368999999999999999999999999999999764
No 150
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.81 E-value=9.4e-08 Score=71.71 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (418)
+|+|||||+.|+.+|..|++.+.+++++++.+.+.. ....++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 589999999999999999999999999999874420 11257788888
Q ss_pred HHHHhcCcccceEeeeEEEEEEEcC
Q 014821 85 SYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 85 ~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
+..++.++ ++.+++.+.+++.++
T Consensus 48 ~~l~~~gV--~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 48 EYLRKRGV--EVHTNTKVKEIEKDG 70 (80)
T ss_dssp HHHHHTTE--EEEESEEEEEEEEET
T ss_pred HHHHHCCC--EEEeCCEEEEEEEeC
Confidence 88888899 899999999999987
No 151
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.81 E-value=5.4e-08 Score=95.34 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=82.5
Q ss_pred cEEEEcCCHHHHHHHHHH--HhCCCceEEEeeCCCCC--c--cccccCCcce-e-----cC-CccccccCCCCCCC-CCC
Q 014821 5 QIAIVGAGVSGLLACKYL--LLKGFHPIVFEARSDIG--G--AWIKTVETTM-L-----QT-PKQLYQFSDYPWPD-SVT 70 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L--~~~~~~v~iie~~~~~g--g--~~~~~~~~~~-l-----~~-~~~~~~~~~~~~~~-~~~ 70 (418)
||+|||||+||+++|..| ++.|.+|+|||+....+ . .|....+... + .. +.....+....... ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 66789999999977652 1 3333111111 0 00 00011111111000 001
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
.....+..+.+++...+...+ .+.++++|.+|+..+ ..+.|.+.++ .++.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i~ 130 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG----------------------DGVLVVLADG-----RTIR 130 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC----------------------ceEEEEECCC-----CEEE
Confidence 223467778888887777434 478889999999877 4567777777 5899
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
|+.||-|+|..
T Consensus 131 a~~VvDa~g~~ 141 (374)
T PF05834_consen 131 ARVVVDARGPS 141 (374)
T ss_pred eeEEEECCCcc
Confidence 99999999965
No 152
>PLN02661 Putative thiazole synthesis
Probab=98.80 E-value=3.6e-08 Score=93.64 Aligned_cols=140 Identities=16% Similarity=0.300 Sum_probs=78.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCc-cccc--cCCcceecCCccc-cccCCCCCCCCCCCCCC---
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQL-YQFSDYPWPDSVTTDFP--- 74 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg-~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--- 74 (418)
.+||+|||||++|+.+|+.|++. +++|+|||++..+|| .|.. .+....++.+... +.-...++.. ...|+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~--~dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE--QENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--CCCeeEec
Confidence 47999999999999999999975 899999999888765 4433 1111112222111 1111222221 11111
Q ss_pred ChhHHHHHHHHHH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCC---ceeEEE
Q 014821 75 DHNQVLDYIQSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH---STEVHQ 150 (418)
Q Consensus 75 ~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~i~ 150 (418)
+..++...|...+ ++.++ +++.++.++++..++ + +..+ ..-.|.....++.++ ....+.
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~--g-rVaG------------VVvnw~~v~~~~~~~s~~dp~~I~ 232 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG--D-RVGG------------VVTNWALVAQNHDTQSCMDPNVME 232 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC--C-EEEE------------EEeecchhhhccCCCCccceeEEE
Confidence 2234444455444 34577 788888999988754 0 0000 000122222222221 234799
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
+++||+|||..
T Consensus 233 AkaVVlATGh~ 243 (357)
T PLN02661 233 AKVVVSSCGHD 243 (357)
T ss_pred CCEEEEcCCCC
Confidence 99999999965
No 153
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.78 E-value=5.1e-08 Score=99.11 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC-CCCccc-cccCCcce----ec---CCccccc----cC--CCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAW-IKTVETTM----LQ---TPKQLYQ----FS--DYPW 65 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~-~~gg~~-~~~~~~~~----l~---~~~~~~~----~~--~~~~ 65 (418)
|..+||+|||||+||++||..+++.|.+|+++|++. .+|+.- .....+.. +. .....+. -. .+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 457899999999999999999999999999999973 555311 11111100 00 0000000 00 0111
Q ss_pred CCC------C-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 66 PDS------V-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 66 ~~~------~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
... + ......+..+...+...+... ++ .+ +++.|.++..++ +....|.
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV--~I-~q~~V~~Li~e~---------------------grV~GV~ 137 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNL--DL-FQGEVEDLIVEN---------------------GRVVGVV 137 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEecC---------------------CEEEEEE
Confidence 000 0 011224455667777766655 55 44 567888887654 1223355
Q ss_pred EecCCCCceeEEEeCEEEEeeccC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.++ ..+.|+.||+|||++
T Consensus 138 t~dG-----~~I~Ak~VIlATGTF 156 (618)
T PRK05192 138 TQDG-----LEFRAKAVVLTTGTF 156 (618)
T ss_pred ECCC-----CEEECCEEEEeeCcc
Confidence 5554 589999999999976
No 154
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.78 E-value=9.8e-08 Score=94.14 Aligned_cols=138 Identities=19% Similarity=0.163 Sum_probs=78.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC------CccccccCCccee-------------cCCccccccCC-
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GGAWIKTVETTML-------------QTPKQLYQFSD- 62 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~------gg~~~~~~~~~~l-------------~~~~~~~~~~~- 62 (418)
.+||+|||||++|+++|..|+++|++|+|||+.+.. +.... ..+.+.+ ..+...+.+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l-~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVL-EQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeE-CHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 479999999999999999999999999999998741 11000 0000000 00111111100
Q ss_pred -----CCCCCCCC-CC--CCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCce
Q 014821 63 -----YPWPDSVT-TD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (418)
Q Consensus 63 -----~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (418)
.++..... .. ...+..+...|.+.+.+.+. .+.++.+++.+.... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------------~~~~ 137 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------------GDRP 137 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------------CCcc
Confidence 11110000 00 01233455556666666676 688888877775433 1234
Q ss_pred EEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 135 ~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
.|++... |...++.+|.||.|.|..|..-.
T Consensus 138 ~V~~~~~--g~~~~i~adlvIGADG~~S~VR~ 167 (390)
T TIGR02360 138 YVTFERD--GERHRLDCDFIAGCDGFHGVSRA 167 (390)
T ss_pred EEEEEEC--CeEEEEEeCEEEECCCCchhhHH
Confidence 5666421 33357999999999999974433
No 155
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.78 E-value=1.2e-07 Score=96.67 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
..+...+...+.+.|. .+..+++|+++..++ +.|.|.+.++. +.+.++.++.||+
T Consensus 155 ~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~~-g~~~~i~a~~VVn 209 (502)
T PRK13369 155 ARLVVLNALDAAERGA--TILTRTRCVSARREG----------------------GLWRVETRDAD-GETRTVRARALVN 209 (502)
T ss_pred HHHHHHHHHHHHHCCC--EEecCcEEEEEEEcC----------------------CEEEEEEEeCC-CCEEEEEecEEEE
Confidence 3444455566777888 889999999998765 55778777765 6667899999999
Q ss_pred eeccCC
Q 014821 157 CVGRFS 162 (418)
Q Consensus 157 AtG~~~ 162 (418)
|+|.++
T Consensus 210 AaG~wa 215 (502)
T PRK13369 210 AAGPWV 215 (502)
T ss_pred CCCccH
Confidence 999874
No 156
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.77 E-value=8.9e-08 Score=95.35 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccccc-----CCcceec-------CCccc---------------
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT-----VETTMLQ-------TPKQL--------------- 57 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~-----~~~~~l~-------~~~~~--------------- 57 (418)
||+|||+|.||++||+.++++|.+|+|+|+....||.-... ......+ ++...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999988766632221 1110000 00000
Q ss_pred ---------------cccCCCCCCC-------------CCCC-------------CCCChhHHHHHHHHHHHhcCcccce
Q 014821 58 ---------------YQFSDYPWPD-------------SVTT-------------DFPDHNQVLDYIQSYASHFDLRKHI 96 (418)
Q Consensus 58 ---------------~~~~~~~~~~-------------~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~v 96 (418)
+.-...++.. .... .......+...+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 0000011111 0000 011356677888888999998 89
Q ss_pred EeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 97 KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 97 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++++++++..++ +...-+...+..++....+.++.||+|||.+.
T Consensus 159 ~~~~~~~~Li~e~---------------------g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 159 RFNTRVTDLITED---------------------GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp EESEEEEEEEEET---------------------TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred eccceeeeEEEeC---------------------CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 9999999999876 22233555544557778999999999999873
No 157
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.76 E-value=7.2e-08 Score=95.93 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=76.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCccccc--cCC-cce------e-----------cCCcc--cccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVE-TTM------L-----------QTPKQ--LYQF 60 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~--~~~-~~~------l-----------~~~~~--~~~~ 60 (418)
.+|+|||||++||++|..|+++| ++|+|||+.+.++..-.. ..| +++ + ..+.. .+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 36999999999999999999998 699999998765421000 000 000 0 00000 0000
Q ss_pred CCC--------CCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 014821 61 SDY--------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (418)
Q Consensus 61 ~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
... ............+..+.+.|...+. .. .+.++++|++++..+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~--~v~~~~~v~~i~~~~----------------------~ 134 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EG--IASFGKRATQIEEQA----------------------E 134 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--Cc--eEEcCCEEEEEEecC----------------------C
Confidence 000 0000000111344555555554432 22 478899999998765 5
Q ss_pred ceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 133 ~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.|.|+..++ .++.+|.||.|+|..|
T Consensus 135 ~~~v~~~~g-----~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 135 EVQVLFTDG-----TEYRCDLLIGADGIKS 159 (414)
T ss_pred cEEEEEcCC-----CEEEeeEEEECCCccH
Confidence 588887665 4799999999999986
No 158
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.75 E-value=9e-08 Score=94.79 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=83.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC---ccccccCCcce-------------ecCCccccccCCC----
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVETTM-------------LQTPKQLYQFSDY---- 63 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g---g~~~~~~~~~~-------------l~~~~~~~~~~~~---- 63 (418)
.+|+|||||++|+++|..|+++|++|+|+|+.+.+. ....-...+.. ...+...+.+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 789999999999999999999999999999987542 11000000000 0000011111110
Q ss_pred -----CC---C-CCCCCC--CCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 014821 64 -----PW---P-DSVTTD--FPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (418)
Q Consensus 64 -----~~---~-~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (418)
.+ . ..+... ...+..+.+.|.+.+... ++ .++++++|++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~---------------------- 138 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG---------------------- 138 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC----------------------
Confidence 00 0 000011 135667777777766554 56 789999999998755
Q ss_pred CceEEEEecCCCCceeEEEeCEEEEeeccCCCCCC
Q 014821 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (418)
Q Consensus 132 ~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~ 166 (418)
+.+.+++.++. ...++.+|.||.|.|..|....
T Consensus 139 ~~v~v~~~~~~--~~~~~~adlvIgADG~~S~vR~ 171 (400)
T PRK06475 139 NSITATIIRTN--SVETVSAAYLIACDGVWSMLRA 171 (400)
T ss_pred CceEEEEEeCC--CCcEEecCEEEECCCccHhHHh
Confidence 44666664332 1247899999999999974433
No 159
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.75 E-value=6.1e-08 Score=97.09 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=83.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHh----CCCceEEEeeCCCCC----------ccccc-----c------------CCcce-e
Q 014821 4 KQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARSDIG----------GAWIK-----T------------VETTM-L 51 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~----~~~~v~iie~~~~~g----------g~~~~-----~------------~~~~~-l 51 (418)
+||+|||||++|+++|..|++ +|++|+|||+++.+. +.+.. . .+.+. .
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999953211 00000 0 00000 0
Q ss_pred -cCCccccccCC------CCCCCC--C--CCCCCChhHHHHHHHHHHHhcC---cccceEeeeEEEEEEEcCCCCccccc
Q 014821 52 -QTPKQLYQFSD------YPWPDS--V--TTDFPDHNQVLDYIQSYASHFD---LRKHIKFNRKVVGIEFEGLSGEDEKS 117 (418)
Q Consensus 52 -~~~~~~~~~~~------~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~~~~~~~~~~ 117 (418)
..+...+.+.+ ..+... . .....++..+.+.|.+.+.+.+ + .+.++++|++++....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~---- 154 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPN---- 154 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEecccccc----
Confidence 00101111100 000100 0 0112345667777777777664 5 7889999999986310000
Q ss_pred ccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 118 WSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
+.....+|++.++ +++.+|.||.|.|..|......
T Consensus 155 -----------~~~~~v~v~~~~g-----~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 155 -----------DNSNWVHITLSDG-----QVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred -----------CCCCceEEEEcCC-----CEEEeeEEEEecCCCChhHHHc
Confidence 0123466766655 5899999999999997544443
No 160
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.74 E-value=8.6e-09 Score=102.74 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=34.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccC----Cccee----cC--Ccc----ccccCCCCCC--CC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTV----ETTML----QT--PKQ----LYQFSDYPWP--DS 68 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~----~~~~l----~~--~~~----~~~~~~~~~~--~~ 68 (418)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...... ..... .. ... .......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 899999999999999999999999999999999998765511 11110 00 000 0000001100 00
Q ss_pred C-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 69 V-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 69 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
+ .........+...+.+.+.+.++ .+.+++.|.++..++ +..+.|.+.+.. | ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------------~~i~~V~~~~~~-g-~~ 135 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------------GRITGVIVETKS-G-RK 135 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------------cccccccccccc-c-cc
Confidence 0 01223445566677777777888 899999999998865 334556665532 2 57
Q ss_pred EEEeCEEEEeeccC
Q 014821 148 VHQVDFVILCVGRF 161 (418)
Q Consensus 148 ~i~~d~vIlAtG~~ 161 (418)
++.++.+|-|||..
T Consensus 136 ~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 136 EIRAKVFIDATGDG 149 (428)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 99999999999954
No 161
>PRK05868 hypothetical protein; Validated
Probab=98.74 E-value=1.3e-07 Score=92.72 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||++|+++|..|+++|++++|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 69999999999999999999999999999998754
No 162
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.73 E-value=1.3e-07 Score=93.00 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
+||+|||||.+|+++|+.|+++|.+|+|||+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5899999999999999999999999999999653
No 163
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.73 E-value=2.1e-07 Score=94.07 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
..+||||||+|.+|+++|..|++.|.+|+|||+.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 568999999999999999999999999999999763
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.73 E-value=1.2e-07 Score=93.66 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
++||+|||||.+|+++|+.|+++ |.+|+|+|+...+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 38999999999999999999998 99999999976543
No 165
>PRK06996 hypothetical protein; Provisional
Probab=98.72 E-value=1.1e-07 Score=93.96 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=81.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC----CceEEEeeCCCCCcccc--c---c------CCcce----ecCCccccccC--
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG----FHPIVFEARSDIGGAWI--K---T------VETTM----LQTPKQLYQFS-- 61 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~----~~v~iie~~~~~gg~~~--~---~------~~~~~----l~~~~~~~~~~-- 61 (418)
.+||+|||||++|+++|..|+++| ++|+|+|+.+.....-. . . ...+. ...+...+.+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 479999999999999999999987 46999999753210000 0 0 00000 00011111111
Q ss_pred -----------CCCCCCCCCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCC
Q 014821 62 -----------DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (418)
Q Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (418)
++..+. .....++..+.+.|.+.+...+. .+.+++++++++...
T Consensus 91 ~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~--------------------- 145 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA--------------------- 145 (398)
T ss_pred CCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC---------------------
Confidence 111110 11124567788888888888887 788899999997665
Q ss_pred CCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 131 ~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
+.+++++.++. + .++++||.||.|+|.
T Consensus 146 -~~v~v~~~~~~-g-~~~i~a~lvIgADG~ 172 (398)
T PRK06996 146 -DGVTLALGTPQ-G-ARTLRARIAVQAEGG 172 (398)
T ss_pred -CeEEEEECCCC-c-ceEEeeeEEEECCCC
Confidence 45777765432 1 257999999999996
No 166
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.72 E-value=2.8e-07 Score=96.11 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCcc------ccc---cCCccee-----c--CCcccccc----
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGA------WIK---TVETTML-----Q--TPKQLYQF---- 60 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~------~~~---~~~~~~l-----~--~~~~~~~~---- 60 (418)
+++||+|||||++||++|..|+++ |++++|||+.+..... +.. ....+-+ . .+...+.|
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 367999999999999999999995 9999999998643210 000 0000000 0 00000000
Q ss_pred -------------CCCCCCCC-CCCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCC
Q 014821 61 -------------SDYPWPDS-VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (418)
Q Consensus 61 -------------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 126 (418)
...+.... ......++..+.+.|.+.+.+.+..-.+.+++++++++.++ +
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~--~-------------- 174 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDE--E-------------- 174 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECC--C--------------
Confidence 00000000 00112345567778888777765311567889999998764 0
Q ss_pred CCCCCCceEEEEecCC---CCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 127 PFGSRGKWTVAVEDAK---NHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 127 ~~~~~~~~~v~~~~~~---~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
.....+|++++.+ +|..++++||+||-|.|+.|.+....
T Consensus 175 ---~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 175 ---GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred ---CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 0123667776532 34557899999999999997544433
No 167
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.72 E-value=3.1e-07 Score=92.10 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=83.4
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCCCCCcccccc-----CCcceec-------CCc----------------
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIKT-----VETTMLQ-------TPK---------------- 55 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~~~gg~~~~~-----~~~~~l~-------~~~---------------- 55 (418)
||||||+|.+|+++|..++++| .+|+|+|+.+..||.-... ......+ .+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999988765431110 0000000 000
Q ss_pred --------------cccccCCCCCCC-------C--C-C-----CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEE
Q 014821 56 --------------QLYQFSDYPWPD-------S--V-T-----TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106 (418)
Q Consensus 56 --------------~~~~~~~~~~~~-------~--~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~ 106 (418)
.++. ...++.. . . . ........+...+...+++.++ +++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0111 0111100 0 0 0 0112345678888888888898 899999999998
Q ss_pred EcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 107 FEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.++ .+...-|.+.+. ++....+.++.||+|+|.++
T Consensus 158 ~~~--------------------~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD--------------------QGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC--------------------CCcEEEEEEEeC-CCeEEEEecceEEEecCCCC
Confidence 754 012233444432 23445688999999999874
No 168
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.71 E-value=1.8e-07 Score=91.40 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGG 40 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg 40 (418)
|+++||+|||||..|+++|..|.++. .+|+|+||.+.+|.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 78899999999999999999999988 89999999988764
No 169
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.70 E-value=1.8e-07 Score=96.18 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||+|||||..|+++|+.|+++|++|+|||+++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 5899999999999999999999999999999965
No 170
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.69 E-value=4.4e-07 Score=90.17 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=32.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||..|+++|++|++.|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998643
No 171
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.65 E-value=4.6e-08 Score=70.71 Aligned_cols=48 Identities=33% Similarity=0.536 Sum_probs=40.7
Q ss_pred EEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecCCc
Q 014821 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPK 55 (418)
Q Consensus 8 IIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~~~ 55 (418)
|||||++||++|..|++.+++|+|+|+++.+||.+.. .+++..+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999998887 55665555443
No 172
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.65 E-value=1.4e-07 Score=91.11 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=75.0
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEE-eeCCCCCccccccCCcceecCC----------ccc---------cccCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVF-EARSDIGGAWIKTVETTMLQTP----------KQL---------YQFSDYP 64 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~ii-e~~~~~gg~~~~~~~~~~l~~~----------~~~---------~~~~~~~ 64 (418)
||+|||||+||+.||..+++.|.+|.++ .+.+.+|..- +.|...-.-. ... .+|.-..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 7999999999999999999999999999 4444444311 1122111100 000 0110000
Q ss_pred C---CCCC-CCCCCChhHHHHHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEe
Q 014821 65 W---PDSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (418)
Q Consensus 65 ~---~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (418)
. +..+ .....++..+.+++++.+... ++ .+ ++.+|+++..+. +...-|.+.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~---------------------~~v~GV~~~ 134 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVEN---------------------GKVKGVVTK 134 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECT---------------------TEEEEEEET
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecC---------------------CeEEEEEeC
Confidence 0 1111 112346788899999888875 45 44 568999998866 344557776
Q ss_pred cCCCCceeEEEeCEEEEeeccC
Q 014821 140 DAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 140 ~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++ ..+.+|.||+|||++
T Consensus 135 ~g-----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 135 DG-----EEIEADAVVLATGTF 151 (392)
T ss_dssp TS-----EEEEECEEEE-TTTG
T ss_pred CC-----CEEecCEEEEecccc
Confidence 66 689999999999964
No 173
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.64 E-value=4.4e-07 Score=90.56 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=47.0
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
....+.+.|. .+...++|+++.++. +.|-|.+.+..+|+..+++++.||.|+|.++
T Consensus 170 ~a~~A~~~Ga--~il~~~~v~~~~re~----------------------~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAAEHGA--EILTYTRVESLRREG----------------------GVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHhccc--chhhcceeeeeeecC----------------------CEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 3444556677 788889999999988 4788999998889999999999999999874
No 174
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.63 E-value=2.8e-07 Score=90.06 Aligned_cols=36 Identities=39% Similarity=0.500 Sum_probs=33.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 5 QIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
||+|||||+||+++|..|++. |++|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999886665
No 175
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.62 E-value=8.4e-07 Score=90.41 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=35.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|+.+++.|.+|+|||+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 57999999999999999999999999999999887765
No 176
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=5.7e-07 Score=93.07 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
|..+||+|||||.||++||..+++. +.+|+|+||....+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 7789999999999999999999986 47999999976544
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.59 E-value=2.2e-06 Score=86.81 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=75.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+. ..+ ..++...+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PTE--DAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999975331 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEc-CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFE-GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
.+..++.++ .+..+++|.+++.. . ++...+...+ +...++.||.||+|+|..
T Consensus 228 ~~~l~~~gI--~i~~~~~v~~i~~~~~---------------------~~~~~~~~~~---g~~~~i~~D~vi~a~G~~- 280 (472)
T PRK05976 228 ARLLKKLGV--RVVTGAKVLGLTLKKD---------------------GGVLIVAEHN---GEEKTLEADKVLVSVGRR- 280 (472)
T ss_pred HHHHHhcCC--EEEeCcEEEEEEEecC---------------------CCEEEEEEeC---CceEEEEeCEEEEeeCCc-
Confidence 777788898 89999999999852 2 1212222222 334579999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 281 --p~~~ 284 (472)
T PRK05976 281 --PNTE 284 (472)
T ss_pred --cCCC
Confidence 6554
No 178
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=8.9e-07 Score=91.35 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999764443
No 179
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=8.7e-07 Score=92.51 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.|||+||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999866554
No 180
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1e-06 Score=91.23 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
|++.||+|||+|.|||+||..+++.|.+|+|+|+.+..+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 889999999999999999999999999999999976543
No 181
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.58 E-value=1.6e-06 Score=87.58 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+. .. ...++...+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999976331 00 113566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++.++++|.+++..+ +...+...++ ...++.||.||+|+|..
T Consensus 218 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g---~~~~i~~D~vi~a~G~~-- 268 (461)
T TIGR01350 218 AKALKKKGV--KILTNTKVTAVEKND----------------------DQVVYENKGG---ETETLTGEKVLVAVGRK-- 268 (461)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEeCC---cEEEEEeCEEEEecCCc--
Confidence 777888888 899999999998655 3344444332 23579999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 269 -p~~~ 272 (461)
T TIGR01350 269 -PNTE 272 (461)
T ss_pred -ccCC
Confidence 6554
No 182
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.57 E-value=2.7e-06 Score=85.95 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=78.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999976331 00 114666777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
++..++.++ .+.++++|++++..+ +.+.+.+.++ +...++.||.||+|+|..
T Consensus 220 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g--g~~~~i~~D~vi~a~G~~-- 271 (462)
T PRK06416 220 ERALKKRGI--KIKTGAKAKKVEQTD----------------------DGVTVTLEDG--GKEETLEADYVLVAVGRR-- 271 (462)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEEeC--CeeEEEEeCEEEEeeCCc--
Confidence 777888888 899999999998765 3355555443 344679999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 272 -p~~~ 275 (462)
T PRK06416 272 -PNTE 275 (462)
T ss_pred -cCCC
Confidence 5543
No 183
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=9.1e-07 Score=92.29 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.||++||..+++.|.+|+|+|+....
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 479999999999999999999999999999998644
No 184
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.54 E-value=1.4e-06 Score=86.50 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=83.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.|+..|..+++.|.+|+|+|+.+.+- +. ...++.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p~--~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------PG--EDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 3679999999999999999999999999999987441 11 12588889
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+....++.++ .++.++++..++..+ +...+.+.++.++ ++.+|.|++|+|.
T Consensus 220 ~~~~l~~~gv--~i~~~~~v~~~~~~~----------------------~~v~v~~~~g~~~---~~~ad~vLvAiGR-- 270 (454)
T COG1249 220 LTKQLEKGGV--KILLNTKVTAVEKKD----------------------DGVLVTLEDGEGG---TIEADAVLVAIGR-- 270 (454)
T ss_pred HHHHHHhCCe--EEEccceEEEEEecC----------------------CeEEEEEecCCCC---EEEeeEEEEccCC--
Confidence 9988888677 799999999998876 3356676666322 7899999999994
Q ss_pred CCCCCCCC
Q 014821 163 DVPNIPEF 170 (418)
Q Consensus 163 ~~p~~p~~ 170 (418)
.|+...+
T Consensus 271 -~Pn~~~L 277 (454)
T COG1249 271 -KPNTDGL 277 (454)
T ss_pred -ccCCCCC
Confidence 5777754
No 185
>PRK08275 putative oxidoreductase; Provisional
Probab=98.54 E-value=1.8e-06 Score=88.98 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=81.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC-CccccccCCcc--e----ecCCcccc---------------
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI-GGAWIKTVETT--M----LQTPKQLY--------------- 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~-gg~~~~~~~~~--~----l~~~~~~~--------------- 58 (418)
.+||+|||+|.||+.||..+++. |.+|+|+||.+.. ++.......+. . ..++...+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 37999999999999999999986 6899999998753 22211100000 0 01111000
Q ss_pred ---------------ccCCCCCCCCCCC---------------CCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEc
Q 014821 59 ---------------QFSDYPWPDSVTT---------------DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFE 108 (418)
Q Consensus 59 ---------------~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 108 (418)
.-...++...... .......+.+.|...+++.++ .+.+++.|+++...
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~~ 166 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV--LITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC--EEEcceEEEEEEEc
Confidence 0001111100000 011345677888888888888 89999999999875
Q ss_pred CCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 109 GLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+ + +...-+...+..++....+.++.||+|||...
T Consensus 167 ~--~------------------g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 A--D------------------GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred C--C------------------CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3 0 11112222222234456789999999999873
No 186
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.53 E-value=7e-07 Score=90.06 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-C-CceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-G-FHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~-~~v~iie~~~~ 37 (418)
.+||||||||..|+++|+.|++. + .+|+|||+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 58999999999999999999996 4 59999999754
No 187
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.53 E-value=9.8e-07 Score=86.65 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+.. ..+ ......++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------~~~--~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------SLM--PPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------hhC--CHHHHHHH
Confidence 6899999999999999999999999999999753310 000 13456677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++.+++++.+++... +.+.+.+.++ .++.||.||+|+|..
T Consensus 190 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 190 QHRLTEMGV--HLLLKSQLQGLEKTD----------------------SGIRATLDSG-----RSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHhCCC--EEEECCeEEEEEccC----------------------CEEEEEEcCC-----cEEECCEEEECcCCC
Confidence 777788888 888999999998654 4466766655 589999999999965
No 188
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.53 E-value=6.1e-07 Score=94.55 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||||.+|+++|+.|+++|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 59999999999999999999999999999997543
No 189
>PLN02985 squalene monooxygenase
Probab=98.52 E-value=1.9e-06 Score=87.71 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||+|||||++|+++|..|+++|.+|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 5799999999999999999999999999999975
No 190
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.52 E-value=1.2e-06 Score=81.06 Aligned_cols=139 Identities=23% Similarity=0.326 Sum_probs=91.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC--c---------------------------cccc--cCCccee
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G---------------------------AWIK--TVETTML 51 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g--g---------------------------~~~~--~~~~~~l 51 (418)
..+++|||||.-|+++|..|+++|.++.++|+-+-+- | .|+. ...+..+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~ 86 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL 86 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence 4799999999999999999999999999999865221 1 2222 1111111
Q ss_pred cCCccc----------------------------------cccC-CCCCCCCC------CCCCCChhHHHHHHHHHHHhc
Q 014821 52 QTPKQL----------------------------------YQFS-DYPWPDSV------TTDFPDHNQVLDYIQSYASHF 90 (418)
Q Consensus 52 ~~~~~~----------------------------------~~~~-~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~ 90 (418)
..+... -.|+ ..+++.+| ...+......+..++..+++.
T Consensus 87 ~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~ 166 (399)
T KOG2820|consen 87 HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAREL 166 (399)
T ss_pred cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHc
Confidence 111000 0233 34455544 344456777888999999999
Q ss_pred CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCCCCCCC
Q 014821 91 DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIP 168 (418)
Q Consensus 91 ~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~~p~~p 168 (418)
|. .++.+.+|+.+...+ + .+....|.+.++ ..+.++.+|+|+|++ ..-.+|
T Consensus 167 G~--i~~dg~~v~~~~~~~----e---------------~~~~v~V~Tt~g-----s~Y~akkiI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 167 GV--IFRDGEKVKFIKFVD----E---------------EGNHVSVQTTDG-----SIYHAKKIIFTVGAW-INKLLP 217 (399)
T ss_pred Ce--EEecCcceeeEeecc----C---------------CCceeEEEeccC-----CeeecceEEEEecHH-HHhhcC
Confidence 98 788888898888644 0 023345555565 469999999999998 344444
No 191
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.52 E-value=6.3e-07 Score=90.38 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~ 36 (418)
.+||+|||||++|+++|++|++. |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 47999999999999999999997 89999999964
No 192
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.52 E-value=8.5e-07 Score=86.68 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=31.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+||+|||||.+|+++|+.|++.|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999965
No 193
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.51 E-value=1.7e-06 Score=89.52 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
||+|||+|.||++||..+++.|.+|+|+|+....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999976543
No 194
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1.8e-06 Score=88.61 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=34.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++.|.+|+|+|+....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 58999999999999999999999999999999875543
No 195
>PRK07121 hypothetical protein; Validated
Probab=98.51 E-value=6.9e-07 Score=90.91 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=35.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999887665
No 196
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.50 E-value=1.8e-06 Score=90.03 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 48999999999999999999999999999999753
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.50 E-value=4.9e-06 Score=84.07 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=77.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..++...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------RE--EPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------cc--CHHHHHHH
Confidence 6899999999999999999999999999999753310 00 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..+..++ ++.++++|..++.++ +...+.+... +...++.+|.||+|+|..
T Consensus 214 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~ViiA~G~~-- 265 (463)
T TIGR02053 214 EEALAEEGI--EVVTSAQVKAVSVRG----------------------GGKIITVEKP--GGQGEVEADELLVATGRR-- 265 (463)
T ss_pred HHHHHHcCC--EEEcCcEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEEeECCC--
Confidence 777778888 899999999998754 3344554432 223679999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 266 -p~~~ 269 (463)
T TIGR02053 266 -PNTD 269 (463)
T ss_pred -cCCC
Confidence 5554
No 198
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.50 E-value=2.4e-06 Score=86.23 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=32.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+||+|||+|.|||++|..+++.|.+|+|+|+.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 89999999999999999999999999999997643
No 199
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.1e-06 Score=88.32 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.||++||..+ +.|.+|+|+|+...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 47999999999999999999 88999999999753
No 200
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.47 E-value=2.7e-06 Score=84.94 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+. .|.+|+|+||.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999985 6999999999876554
No 201
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.46 E-value=2.9e-06 Score=79.69 Aligned_cols=149 Identities=23% Similarity=0.332 Sum_probs=110.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.||.++.-..+.|.+|+++|-.+.+|+.. ..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------D~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------DGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------CHHHHHH
Confidence 3689999999999999999999999999999988776431 1478888
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
++......++ .+.++++|..++.+. ++...|.+.+.++++.++++||.+.+|+|.
T Consensus 258 ~qr~L~kQgi--kF~l~tkv~~a~~~~---------------------dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-- 312 (506)
T KOG1335|consen 258 FQRVLQKQGI--KFKLGTKVTSATRNG---------------------DGPVEIEVENAKTGKKETLECDVLLVSIGR-- 312 (506)
T ss_pred HHHHHHhcCc--eeEeccEEEEeeccC---------------------CCceEEEEEecCCCceeEEEeeEEEEEccC--
Confidence 8888888888 899999999999987 346788899988899999999999999995
Q ss_pred CCCCCCCCCCCCCCCC------CCceEEeccCCCCchhhhhhhhcCCCEEEEEcCCCCHHHHHHHHhh
Q 014821 163 DVPNIPEFPPKKGPEA------FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (418)
Q Consensus 163 ~~p~~p~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~e~a~~l~~ 224 (418)
+|..-.+ |++. ..+++....++.. +-.+|-.||--.-|--+|...-+
T Consensus 313 -rP~t~GL----gle~iGi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 313 -RPFTEGL----GLEKIGIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred -cccccCC----Chhhcccccccccceeccccccc----------cCCceEEecccCCcchhhhhhhh
Confidence 4666543 3332 3344444333332 22357777755555444444433
No 202
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=6.8e-06 Score=83.06 Aligned_cols=104 Identities=25% Similarity=0.273 Sum_probs=78.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. +.+ ..++...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PNE--DAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Ccc--CHHHHHHH
Confidence 689999999999999999999999999999865331 111 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++.++++|.+++... ....+.+.. .++...++.+|.||+|+|.
T Consensus 220 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~-~~g~~~~i~~D~vi~a~G~--- 271 (466)
T PRK07818 220 AKQYKKLGV--KILTGTKVESIDDNG----------------------SKVTVTVSK-KDGKAQELEADKVLQAIGF--- 271 (466)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEeC----------------------CeEEEEEEe-cCCCeEEEEeCEEEECcCc---
Confidence 777788899 899999999998654 334454442 1234457999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 272 ~pn~~ 276 (466)
T PRK07818 272 APRVE 276 (466)
T ss_pred ccCCC
Confidence 46554
No 203
>PRK06370 mercuric reductase; Validated
Probab=98.46 E-value=6e-06 Score=83.39 Aligned_cols=103 Identities=18% Similarity=0.311 Sum_probs=77.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------------------R--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------------------c--cCHHHHHHH
Confidence 6899999999999999999999999999999763310 0 113566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
...+++.++ ++.++++|.+++..+ +...+.+... +...++.+|.||+|+|.
T Consensus 219 ~~~l~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~Vi~A~G~--- 269 (463)
T PRK06370 219 REILEREGI--DVRLNAECIRVERDG----------------------DGIAVGLDCN--GGAPEITGSHILVAVGR--- 269 (463)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEECcCC---
Confidence 777888898 899999999998754 2334444321 12357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 270 ~pn~~ 274 (463)
T PRK06370 270 VPNTD 274 (463)
T ss_pred CcCCC
Confidence 46554
No 204
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.46 E-value=3.8e-06 Score=87.44 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=34.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+.||..+++.|.+|+|+||....++
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 47999999999999999999999999999999775444
No 205
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=5.3e-06 Score=83.63 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=75.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHHH
Confidence 689999999999999999999999999999975331 00 114567777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++++++++.+++... ....+ ... +...++.||.||+|+|.
T Consensus 218 ~~~L~~~GI--~i~~~~~V~~i~~~~----------------------~~v~~--~~~--g~~~~i~~D~vivA~G~--- 266 (458)
T PRK06912 218 REKLENDGV--KIFTGAALKGLNSYK----------------------KQALF--EYE--GSIQEVNAEFVLVSVGR--- 266 (458)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEcC----------------------CEEEE--EEC--CceEEEEeCEEEEecCC---
Confidence 777888898 899999999997654 22323 222 33357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 267 ~p~~~ 271 (458)
T PRK06912 267 KPRVQ 271 (458)
T ss_pred ccCCC
Confidence 46654
No 206
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=3e-06 Score=85.57 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=78.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. ..+ ..++...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~~--d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PGT--DTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CCC--CHHHHHH
Confidence 3689999999999999999999999999999975331 111 1356667
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++++++.|.+++..+ +...+.+....++....+.+|.|++|+|..
T Consensus 221 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~- 275 (466)
T PRK06115 221 LQKALTKQGM--KFKLGSKVTGATAGA----------------------DGVSLTLEPAAGGAAETLQADYVLVAIGRR- 275 (466)
T ss_pred HHHHHHhcCC--EEEECcEEEEEEEcC----------------------CeEEEEEEEcCCCceeEEEeCEEEEccCCc-
Confidence 7777778898 899999999998654 334455443222344679999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 276 --pn~~ 279 (466)
T PRK06115 276 --PYTQ 279 (466)
T ss_pred --cccc
Confidence 5543
No 207
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.46 E-value=1.6e-06 Score=88.15 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc--ccccCC----cce---ecCCcccc---------ccCCCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--WIKTVE----TTM---LQTPKQLY---------QFSDYP- 64 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~--~~~~~~----~~~---l~~~~~~~---------~~~~~~- 64 (418)
+||+|||||++|+.+|..+++.|.+++++|++....|. +..... +.. +......+ +|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999987433221 111110 000 00000000 011000
Q ss_pred --CCCCC-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecC
Q 014821 65 --WPDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (418)
Q Consensus 65 --~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (418)
-+.-+ .....++..+...+++.+++++. ...+...|+++.... .+....|.+.++
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pg--V~Ile~~Vv~li~e~--------------------~g~V~GV~t~~G 138 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPN--LSLFQGEVEDLILED--------------------NDEIKGVVTQDG 138 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCC--cEEEEeEEEEEEEec--------------------CCcEEEEEECCC
Confidence 00000 11233566777888888887732 234556788876542 013345666555
Q ss_pred CCCceeEEEeCEEEEeeccC
Q 014821 142 KNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 142 ~~~~~~~i~~d~vIlAtG~~ 161 (418)
..+.|+.||+|||++
T Consensus 139 -----~~I~Ad~VILATGtf 153 (617)
T TIGR00136 139 -----LKFRAKAVIITTGTF 153 (617)
T ss_pred -----CEEECCEEEEccCcc
Confidence 479999999999977
No 208
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.45 E-value=2.7e-06 Score=86.41 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++.|. |+|+|+.+..+|
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 4799999999999999999999997 999999865443
No 209
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=7.7e-06 Score=82.83 Aligned_cols=104 Identities=29% Similarity=0.341 Sum_probs=78.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ..+ ..++...+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AAA--DEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999975321 000 14566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ .+..+++|.+++... +...+...++ ++...++.||.|++|+|.
T Consensus 231 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~~-~g~~~~i~~D~vl~a~G~--- 282 (475)
T PRK06327 231 AKAFTKQGL--DIHLGVKIGEIKTGG----------------------KGVSVAYTDA-DGEAQTLEVDKLIVSIGR--- 282 (475)
T ss_pred HHHHHHcCc--EEEeCcEEEEEEEcC----------------------CEEEEEEEeC-CCceeEEEcCEEEEccCC---
Confidence 777777788 899999999998765 3344544432 244467999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 283 ~p~~~ 287 (475)
T PRK06327 283 VPNTD 287 (475)
T ss_pred ccCCC
Confidence 46655
No 210
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.45 E-value=1.6e-06 Score=84.15 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=93.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC-------------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK-------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~-------------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
..|+|||||++|+.+|..|+.. .++|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3699999999999999999763 13899999987441
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
+.++ ..+..|.+...++.|+ ++..++.|++++++. |++.+++ .+|.
T Consensus 205 p~~~--~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~~--------------------------v~~~~g~----~~I~ 250 (405)
T COG1252 205 PMFP--PKLSKYAERALEKLGV--EVLLGTPVTEVTPDG--------------------------VTLKDGE----EEIP 250 (405)
T ss_pred cCCC--HHHHHHHHHHHHHCCC--EEEcCCceEEECCCc--------------------------EEEccCC----eeEe
Confidence 2222 5778899999999999 899999999999877 7777763 2699
Q ss_pred eCEEEEeeccCCCCCCCCCCCCCCCCC-CCCceEEeccCCCCchhhhhhhhcCCCEEEEEcCC
Q 014821 151 VDFVILCVGRFSDVPNIPEFPPKKGPE-AFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQ 212 (418)
Q Consensus 151 ~d~vIlAtG~~~~~p~~p~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G 212 (418)
|+.+|.|+|.. ..|..-.+. +.+ +-.+.++-...+.. .....|-++|-.
T Consensus 251 ~~tvvWaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~ 300 (405)
T COG1252 251 ADTVVWAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV---------PGHPDIFAAGDC 300 (405)
T ss_pred cCEEEEcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc---------CCCCCeEEEecc
Confidence 99999999987 344443322 333 22355555444433 234557777743
No 211
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=3e-06 Score=87.82 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC---CceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~---~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 479999999999999999999998 89999999875443
No 212
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=4.9e-06 Score=86.43 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 3799999999999999999999999999999976433
No 213
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=5e-06 Score=86.23 Aligned_cols=36 Identities=33% Similarity=0.343 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.|||.||..+++.|.+|+|||+....
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~ 47 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 479999999999999999999999999999997543
No 214
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.44 E-value=2.9e-06 Score=85.70 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEE
Q 014821 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (418)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vI 155 (418)
...+...+.+.+.+.|. .++++++|++++..+ ++.|.+.+.+..++...++.+|+||
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~~---------------------~~~v~v~~~~~~~g~~~~i~A~~VV 233 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQS---------------------DGSWTVTVKNTRTGGKRTLNTRFVF 233 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---------------------CCeEEEEEeeccCCceEEEECCEEE
Confidence 44556667677777788 899999999998754 2457776654333444579999999
Q ss_pred EeeccCC
Q 014821 156 LCVGRFS 162 (418)
Q Consensus 156 lAtG~~~ 162 (418)
+|+|.++
T Consensus 234 ~AAG~~s 240 (483)
T TIGR01320 234 VGAGGGA 240 (483)
T ss_pred ECCCcch
Confidence 9999874
No 215
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.44 E-value=3.2e-06 Score=84.80 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=75.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999999975331 00 11356667
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++.++++|++++..+ +...+.. ++ .++.||.||+|+|..
T Consensus 204 ~~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~v~v~~-~g-----~~i~~D~viva~G~~- 252 (438)
T PRK07251 204 AKQYMEEDGI--TFLLNAHTTEVKNDG----------------------DQVLVVT-ED-----ETYRFDALLYATGRK- 252 (438)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEecC----------------------CEEEEEE-CC-----eEEEcCEEEEeeCCC-
Confidence 7777888898 899999999998644 2233332 22 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 253 --p~~~ 256 (438)
T PRK07251 253 --PNTE 256 (438)
T ss_pred --CCcc
Confidence 6544
No 216
>PLN02815 L-aspartate oxidase
Probab=98.43 E-value=3.3e-06 Score=87.27 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||++|..+++.| +|+|+|+....+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 8999999876554
No 217
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.43 E-value=2e-06 Score=85.10 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... . ....+..++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~--~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------N--APPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------h--cCHHHHHHH
Confidence 68999999999999999999999999999997633210 0 113566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++++++++++++. + +...+.+.++ .++.||.||+|+|..
T Consensus 193 ~~~l~~~GV--~i~~~~~V~~i~~-~----------------------~~~~v~l~~g-----~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 193 LQRHQQAGV--RILLNNAIEHVVD-G----------------------EKVELTLQSG-----ETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHCCC--EEEeCCeeEEEEc-C----------------------CEEEEEECCC-----CEEECCEEEECCCCC
Confidence 777778898 8999999999875 2 2244555555 479999999999965
No 218
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.43 E-value=3.6e-06 Score=87.56 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=32.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.||..+++. |.+|+|+|+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999998 999999999764
No 219
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.42 E-value=3.1e-06 Score=85.45 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=77.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------------------------------F--LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------------c--CCHHHHHH
Confidence 36899999999999999999999999999999763310 0 11456677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ .+..++++++++..+ +.+.+.+.++ .++.||.||+|+|..
T Consensus 222 l~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vi~a~G~~- 271 (461)
T PRK05249 222 LSYHLRDSGV--TIRHNEEVEKVEGGD----------------------DGVIVHLKSG-----KKIKADCLLYANGRT- 271 (461)
T ss_pred HHHHHHHcCC--EEEECCEEEEEEEeC----------------------CeEEEEECCC-----CEEEeCEEEEeecCC-
Confidence 7777778888 899999999998655 3355655444 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 272 --p~~~ 275 (461)
T PRK05249 272 --GNTD 275 (461)
T ss_pred --cccc
Confidence 5543
No 220
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.41 E-value=5.2e-06 Score=83.58 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=32.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~ 38 (418)
.+||||||||.+|+++|..|++. +.+|+|+|+.+.+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 47999999999999999999997 7899999994443
No 221
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.41 E-value=6.4e-06 Score=85.36 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||+||..+++.|.+|+|+||....++
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999865443
No 222
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=3.2e-07 Score=68.81 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCccc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~ 242 (418)
+|+|||+|.+|+|+|..|...+.. |+++.|++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh
Confidence 689999999999999999998765 99999999744
No 223
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.41 E-value=6.1e-06 Score=86.02 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=34.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+.||..+++.|.+|+|+||....++
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 37999999999999999999999999999999765443
No 224
>PRK06116 glutathione reductase; Validated
Probab=98.41 E-value=4.2e-06 Score=84.20 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=78.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~~--~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RGF--DPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------ccc--CHHHHHH
Confidence 3689999999999999999999999999999965321 001 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ ++.++++|.+++..+ ++.+.+.+.++ .++.||.||+|+|.
T Consensus 214 l~~~L~~~GV--~i~~~~~V~~i~~~~---------------------~g~~~v~~~~g-----~~i~~D~Vv~a~G~-- 263 (450)
T PRK06116 214 LVEEMEKKGI--RLHTNAVPKAVEKNA---------------------DGSLTLTLEDG-----ETLTVDCLIWAIGR-- 263 (450)
T ss_pred HHHHHHHCCc--EEECCCEEEEEEEcC---------------------CceEEEEEcCC-----cEEEeCEEEEeeCC--
Confidence 7777888898 899999999998765 22255655544 47999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 264 -~p~~~ 268 (450)
T PRK06116 264 -EPNTD 268 (450)
T ss_pred -CcCCC
Confidence 46554
No 225
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.41 E-value=3.3e-06 Score=86.11 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=34.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
|..+||+|||+|.||+.+|..+++ +.+|+|+|+.+..++
T Consensus 1 ~~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 1 MPSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred CCccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 567899999999999999999976 899999999875444
No 226
>PRK07208 hypothetical protein; Provisional
Probab=98.41 E-value=7.2e-07 Score=90.54 Aligned_cols=44 Identities=39% Similarity=0.567 Sum_probs=41.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+++||+|||||++||++|..|.++|++++|+|+++.+||.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 67899999999999999999999999999999999999997665
No 227
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=4.1e-07 Score=92.14 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQT 53 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~ 53 (418)
|+.+||||||||+.||++|..|+++|++|+|+|++..+||.... .+.+.+..+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~ 54 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDT 54 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEecc
Confidence 78899999999999999999999999999999999999996655 444555544
No 228
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.39 E-value=6.6e-06 Score=86.21 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
.+||+|||+|.|||.||..+++.|.+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 489999999999999999999999999999997654
No 229
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.38 E-value=6.3e-06 Score=82.02 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=31.6
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
||+|||||.+|+++|..|+++|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 8999999999999999999999999999997543
No 230
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.36 E-value=5.7e-06 Score=83.13 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RGF--DDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------ccc--CHHHHHHH
Confidence 579999999999999999999999999999965321 001 14566677
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++..+++|.+++..+ +...+.+.++ .++.+|.||+|+|..
T Consensus 214 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~viva~G~~-- 262 (446)
T TIGR01424 214 ARNMEGRGI--RIHPQTSLTSITKTD----------------------DGLKVTLSHG-----EEIVADVVLFATGRS-- 262 (446)
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----cEeecCEEEEeeCCC--
Confidence 777888898 899999999998654 2345555444 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 263 -pn~~ 266 (446)
T TIGR01424 263 -PNTK 266 (446)
T ss_pred -cCCC
Confidence 5543
No 231
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.35 E-value=8.4e-06 Score=84.68 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
|+|||+|.|||+||..+++.|.+|+|+|+.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999987443
No 232
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.35 E-value=1.1e-05 Score=83.66 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=35.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..++++|.+|+|+|+.+..||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 57999999999999999999999999999999887765
No 233
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.34 E-value=8.4e-06 Score=81.95 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=77.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RSF--DSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------ccc--CHHHHHH
Confidence 3689999999999999999999999999999976331 111 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++..++.+.+++... ++...+.+.++ ...+.||.||+|+|..
T Consensus 213 ~~~~l~~~gI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g----~~~i~~D~vi~a~G~~- 264 (450)
T TIGR01421 213 ITEEYEKEGI--NVHKLSKPVKVEKTV---------------------EGKLVIHFEDG----KSIDDVDELIWAIGRK- 264 (450)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEEeC---------------------CceEEEEECCC----cEEEEcCEEEEeeCCC-
Confidence 7777778888 899999999998654 12234544433 1479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 265 --pn~~ 268 (450)
T TIGR01421 265 --PNTK 268 (450)
T ss_pred --cCcc
Confidence 6554
No 234
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=5.7e-07 Score=90.44 Aligned_cols=44 Identities=39% Similarity=0.642 Sum_probs=40.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|++++|+|||||.|||+||+.|...|++|+|+|.++++||.-+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 45789999999999999999999999999999999999996555
No 235
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.33 E-value=1e-05 Score=83.61 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++. +.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999986 579999999875544
No 236
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.32 E-value=6.9e-06 Score=83.13 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI 38 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~ 38 (418)
..+||+|||||..|+++|+.|++. +.+|+|+|+...+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 468999999999999999999984 7799999997644
No 237
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.32 E-value=9.5e-06 Score=84.05 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.|||.||..+++. +.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999986 479999999865443
No 238
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.31 E-value=6.4e-06 Score=85.36 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+.+|+|||||++||++|..|+++|++++|||+..
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4799999999999999999999999999999975
No 239
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=1.5e-05 Score=82.58 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=35.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+||++|..+++.|.+|+|+|+.+..||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 57999999999999999999999999999999887666
No 240
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.31 E-value=5e-06 Score=78.95 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=65.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCCCCccccc-----------cCCcc-----eecCC--cccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK-----------TVETT-----MLQTP--KQLY 58 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~~gg~~~~-----------~~~~~-----~l~~~--~~~~ 58 (418)
.+||||||||||||++|++|.+. .++|+++|+.+.+||.-.. ..|.. -+++| ++.+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 47999999999999999999873 4589999999999873222 11211 12222 2222
Q ss_pred ccC----CC----CCCCCCCCCC-CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcC
Q 014821 59 QFS----DY----PWPDSVTTDF-PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (418)
Q Consensus 59 ~~~----~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 109 (418)
.|. .+ +++..-...| .+-.++.+||-+.++++|+ ++.-..-+.++-+++
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly~e 213 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLYDE 213 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeEcC
Confidence 222 11 1222112333 3556888999999999998 666555555555544
No 241
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.30 E-value=1.6e-05 Score=78.97 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~-~v~iie~~~ 36 (418)
.+||+|||||..|+++|++|+++ |. +|+|||+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 57999999999999999999995 85 899999964
No 242
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.30 E-value=9.3e-06 Score=82.03 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=77.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. ..+ ..++..++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PGE--DADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CCC--CHHHHHHH
Confidence 579999999999999999999999999999865331 111 13566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++..++++.+++..+ +...+.+.++ .++.+|.|++|+|..
T Consensus 225 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~l~~D~vl~a~G~~-- 273 (466)
T PRK07845 225 EEVFARRGM--TVLKRSRAESVERTG----------------------DGVVVTLTDG-----RTVEGSHALMAVGSV-- 273 (466)
T ss_pred HHHHHHCCc--EEEcCCEEEEEEEeC----------------------CEEEEEECCC-----cEEEecEEEEeecCC--
Confidence 888888898 899999999998654 3345555444 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 274 -pn~~ 277 (466)
T PRK07845 274 -PNTA 277 (466)
T ss_pred -cCCC
Confidence 5554
No 243
>PLN02507 glutathione reductase
Probab=98.30 E-value=9.9e-06 Score=82.42 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=76.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+- .. ...++...+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999965221 01 114667777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ ++..+++|.+++..+ +...+...++ .++.+|.|++|+|..
T Consensus 251 ~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~~-- 299 (499)
T PLN02507 251 ARNLEGRGI--NLHPRTNLTQLTKTE----------------------GGIKVITDHG-----EEFVADVVLFATGRA-- 299 (499)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEeC----------------------CeEEEEECCC-----cEEEcCEEEEeecCC--
Confidence 777888898 899999999998654 3344554433 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 300 -pn~~ 303 (499)
T PLN02507 300 -PNTK 303 (499)
T ss_pred -CCCC
Confidence 5554
No 244
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.30 E-value=7.4e-06 Score=79.63 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=49.0
Q ss_pred HHHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 81 DYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 81 ~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
+.+-.++.+. +. .+.++++|++|++.. ++.|.|.+.+..++...++.+++|++..|
T Consensus 185 r~l~~~l~~~~~~--~~~~~~eV~~i~r~~---------------------dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 185 RQLVEYLQKQKGF--ELHLNHEVTDIKRNG---------------------DGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHhCCCc--EEEecCEeCeeEECC---------------------CCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 3333344443 77 899999999999987 57799999988888889999999999999
Q ss_pred cCCCCC
Q 014821 160 RFSDVP 165 (418)
Q Consensus 160 ~~~~~p 165 (418)
.. +.|
T Consensus 242 G~-aL~ 246 (488)
T PF06039_consen 242 GG-ALP 246 (488)
T ss_pred hH-hHH
Confidence 88 344
No 245
>PRK07846 mycothione reductase; Reviewed
Probab=98.30 E-value=9e-06 Score=81.73 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=72.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999975331 00 01345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.. +.++ .+++++++.+++..+ +...+.+.++ .++.||.|++|+|..
T Consensus 213 l~~l~-~~~v--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~~- 261 (451)
T PRK07846 213 FTELA-SKRW--DVRLGRNVVGVSQDG----------------------SGVTLRLDDG-----STVEADVLLVATGRV- 261 (451)
T ss_pred HHHHH-hcCe--EEEeCCEEEEEEEcC----------------------CEEEEEECCC-----cEeecCEEEEEECCc-
Confidence 55544 3466 788899999998654 3344555444 479999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 262 --pn~~ 265 (451)
T PRK07846 262 --PNGD 265 (451)
T ss_pred --cCcc
Confidence 5554
No 246
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.29 E-value=7.8e-06 Score=75.11 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=51.2
Q ss_pred cCcchhhhhccCcEEEeccC--ceeEecCc-EEEc---C-Cc-eeeeccEEEEccCCCCCcchhccccchhhhhhhcCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ--DFSFCEDG-IVVD---G-QT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~--v~~~~~~~-v~~~---~-g~-~~~~~D~Vi~atG~~~~~~~~~~l~~~~~~~~~~~~~ 397 (418)
+.+.+.+.+++.+|++.... |+..+.+. .+|+ + |. ++++++.+-..--.++. +++...-+-+.
T Consensus 238 Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p---------e~l~~s~~adk 308 (446)
T KOG3851|consen 238 YADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP---------EVLANSDLADK 308 (446)
T ss_pred HHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh---------hhhhcCcccCc
Confidence 34555666677777776554 33333332 2332 2 43 33788888766555554 45555556588
Q ss_pred CCCccceeee--eeccCcccc
Q 014821 398 TEKLPLYRSA--HIYIDTLTY 416 (418)
Q Consensus 398 ~~~~~~~~~~--~~~~~~~~~ 416 (418)
.|.+.++..+ +..+||||-
T Consensus 309 tGfvdVD~~TlQs~kypNVFg 329 (446)
T KOG3851|consen 309 TGFVDVDQSTLQSKKYPNVFG 329 (446)
T ss_pred ccceecChhhhccccCCCcee
Confidence 8889998777 888999984
No 247
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=1.8e-05 Score=82.05 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.+||+|||+|.||+++|..+++. .+|+|+||....+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 47999999999999999999976 8999999976433
No 248
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.27 E-value=8.1e-06 Score=82.53 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=37.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCcccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~ 43 (418)
++++++|||||.|||++|.+|++. |.+|+|+|+.+.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357999999999999999999985 679999999999998543
No 249
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=1.4e-05 Score=80.73 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=74.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. ..+ ..++...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PAA--DKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999976331 111 13556666
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++. + .+..++.|..++..+ +...+.+.++ ++...++.+|.||+|+|.
T Consensus 222 ~~~l~~~-v--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~-~~~~~~i~~D~vi~a~G~--- 272 (471)
T PRK06467 222 TKRIKKQ-F--NIMLETKVTAVEAKE----------------------DGIYVTMEGK-KAPAEPQRYDAVLVAVGR--- 272 (471)
T ss_pred HHHHhhc-e--EEEcCCEEEEEEEcC----------------------CEEEEEEEeC-CCcceEEEeCEEEEeecc---
Confidence 6666655 6 788899999998654 3344544332 122357999999999995
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
.|+..
T Consensus 273 ~pn~~ 277 (471)
T PRK06467 273 VPNGK 277 (471)
T ss_pred cccCC
Confidence 46654
No 250
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.27 E-value=2.1e-05 Score=81.55 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=35.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..++++|.+|+|||+++..||.
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 589999999999999999999999999999998776663
No 251
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.26 E-value=6.1e-06 Score=75.85 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=85.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCC-----------ccee-cCCcc-------------
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVE-----------TTML-QTPKQ------------- 56 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~-----------~~~l-~~~~~------------- 56 (418)
+.-.+||||+|.|||+++..+...+-.|+++|+...+||--..... ..++ .+|..
T Consensus 8 ~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~ 87 (477)
T KOG2404|consen 8 ELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKG 87 (477)
T ss_pred cCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCC
Confidence 3446999999999999999999987779999999999883332110 0000 00100
Q ss_pred ---cc-----------c-----c----------CC--CCCCCCCCCCCCChhHHHHHHHHHHHhc----CcccceEeeeE
Q 014821 57 ---LY-----------Q-----F----------SD--YPWPDSVTTDFPDHNQVLDYIQSYASHF----DLRKHIKFNRK 101 (418)
Q Consensus 57 ---~~-----------~-----~----------~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~v~~~~~ 101 (418)
+| . | .. .|.........|+..+++..|....+++ .-.-++..+++
T Consensus 88 ~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 88 VPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred cHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcce
Confidence 00 0 0 00 1111111344556666666555444433 22125788999
Q ss_pred EEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 102 VVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 102 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
|++|.++. ++..-|.+.+ .+|+...+.++.||+|||.+.
T Consensus 168 vv~il~n~---------------------gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 168 VVDILRNN---------------------GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeeeecCC---------------------CeEEEEEEEc-CCCCccceecCceEEecCCcC
Confidence 99999766 3444455553 346667899999999999884
No 252
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.26 E-value=1.9e-05 Score=80.76 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+| +|+++|..+++.|.+|+|||+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999999999999999876554
No 253
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.26 E-value=1.4e-05 Score=80.16 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=75.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. ..+ ..++...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHH
Confidence 3689999999999999999999999999999965221 111 1456677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+.+++.++ ++.+++++.+++..+ +.+.+...++ ++.+|.|++|+|..
T Consensus 205 l~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~~v~v~~~~g------~i~~D~vl~a~G~~- 253 (441)
T PRK08010 205 IATILRDQGV--DIILNAHVERISHHE----------------------NQVQVHSEHA------QLAVDALLIASGRQ- 253 (441)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEcCC------eEEeCEEEEeecCC-
Confidence 7888888898 899999999998654 3344443222 58899999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 254 --pn~~ 257 (441)
T PRK08010 254 --PATA 257 (441)
T ss_pred --cCCC
Confidence 5543
No 254
>PRK14727 putative mercuric reductase; Provisional
Probab=98.26 E-value=1.3e-05 Score=81.35 Aligned_cols=98 Identities=8% Similarity=0.151 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||+|+.|+.+|..|.+.|.+|+++++.. +- . ....++...+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l-------------------------------~--~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LL-------------------------------F--REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CC-------------------------------C--cchHHHHHHH
Confidence 689999999999999999999999999998732 10 0 0113566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ ++.++++|..++..+ +.+.+...++ ++.+|.||+|+|..
T Consensus 235 ~~~L~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g------~i~aD~VlvA~G~~-- 282 (479)
T PRK14727 235 TACFEKEGI--EVLNNTQASLVEHDD----------------------NGFVLTTGHG------ELRAEKLLISTGRH-- 282 (479)
T ss_pred HHHHHhCCC--EEEcCcEEEEEEEeC----------------------CEEEEEEcCC------eEEeCEEEEccCCC--
Confidence 888888898 899999999998655 3344543332 58999999999955
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 283 -pn~~ 286 (479)
T PRK14727 283 -ANTH 286 (479)
T ss_pred -CCcc
Confidence 5544
No 255
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.4e-05 Score=77.50 Aligned_cols=41 Identities=37% Similarity=0.606 Sum_probs=38.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
|+..||+|||+|.+||.+|..|.+.|++|+|+|.++++||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 45789999999999999999999999999999999999884
No 256
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.25 E-value=1.1e-05 Score=81.13 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|.+.|.+|+++++.+.+.. ..+ ..++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------~~~--~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------DSF--DKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc------------------------------hhc--CHHHHHHH
Confidence 6899999999999999999999999999998652210 001 24677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.++ ++.+++++.+++... ....+...+ .++.||.||+|+|..
T Consensus 198 ~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 198 EEELRENGV--ELHLNEFVKSLIGED----------------------KVEGVVTDK------GEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHCCC--EEEcCCEEEEEecCC----------------------cEEEEEeCC------CEEEcCEEEECcCCC
Confidence 888888898 899999999996433 223333322 269999999999954
No 257
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.24 E-value=1.1e-05 Score=80.75 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||++|+.+|..|++.|.+|+++++.+.+.. ..+ ..++..++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~~--~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KLF--DEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------ccc--CHHHHHHH
Confidence 6899999999999999999999999999998753210 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+++.|+ ++.+++++.+++.+. . . +.+.++ .++.||.||+|+|..
T Consensus 186 ~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~-~-v~~~~g-----~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 186 EEELKKHEI--NLRLNEEVDSIEGEE----------------------R-V-KVFTSG-----GVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHcCC--EEEeCCEEEEEecCC----------------------C-E-EEEcCC-----CEEEeCEEEECCCcc
Confidence 888888898 899999999997644 1 2 334444 479999999999954
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.24 E-value=7.1e-06 Score=82.21 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=71.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++...+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------------------~--~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-------------------------------L--MDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-------------------------------h--cCHHHHHHH
Confidence 5899999999999999999999999999999753311 0 013566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+..++.++ ++.++++|.+++.. .+.+.++ .++.||.|++|+|..
T Consensus 196 ~~~l~~~gI--~i~~~~~v~~i~~~--------------------------~v~~~~g-----~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 196 LDELDKREI--PYRLNEEIDAINGN--------------------------EVTFKSG-----KVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHhcCC--EEEECCeEEEEeCC--------------------------EEEECCC-----CEEEeCEEEECcCCC
Confidence 777888898 89999999998632 2555444 478999999999954
No 259
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=1.1e-05 Score=82.81 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999999999965
No 260
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.24 E-value=1.2e-05 Score=78.98 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=33.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|.++||+|||||.+|+++|+.|++.|.+|+++|+..-
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 3578999999999999999999999999999998663
No 261
>PRK12839 hypothetical protein; Provisional
Probab=98.23 E-value=2.9e-05 Score=80.19 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=36.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..|++.|.+++|||+...+||.
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 579999999999999999999999999999998877764
No 262
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.23 E-value=2.7e-05 Score=80.21 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=35.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||||||+| +|+++|..+++.|.+|+|+|+.+.+||..
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 5899999999 89999999999999999999998888743
No 263
>PRK14694 putative mercuric reductase; Provisional
Probab=98.22 E-value=1.8e-05 Score=80.02 Aligned_cols=95 Identities=12% Similarity=0.235 Sum_probs=71.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+|+++++.. +- .. ...++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l-------------------------------~~--~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL-------------------------------SQ--EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999998732 10 00 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++..++.++ ++.+++++.+++.++ +.+.+...+ .++.+|.||+|+|..
T Consensus 224 l~~~l~~~GI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 224 IEAAFRREGI--EVLKQTQASEVDYNG----------------------REFILETNA------GTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEECC------CEEEeCEEEEccCCC
Confidence 7888888898 899999999998654 334443322 259999999999955
No 264
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=3.3e-05 Score=79.64 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=35.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||+|||+|.+|+++|..+++.|.+|+|||+....||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 589999999999999999999999999999998766653
No 265
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.21 E-value=2.5e-05 Score=80.30 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||+++|..+++. .+|+|+||....+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 47999999999999999999886 89999999875554
No 266
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.21 E-value=9.7e-06 Score=83.34 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||+|.||++||..++ .|.+|+|+||.+..|+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 579999999999999999996 4899999999876554
No 267
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.21 E-value=2.1e-05 Score=81.16 Aligned_cols=38 Identities=26% Similarity=0.568 Sum_probs=35.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||||||+|.+|+++|..++++|.+++|||+....||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 57999999999999999999999999999999877665
No 268
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.20 E-value=3.6e-05 Score=79.78 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=36.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
.+||+|||+|.+|+++|..++++|.+|+|||+....||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 4799999999999999999999999999999988777754
No 269
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.19 E-value=2e-05 Score=79.20 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=72.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..++...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~~--d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------HL--DEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------cc--CHHHHHHH
Confidence 6899999999999999999999999999999653210 00 13445555
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..+ .++ .++++++|.+++..+ +...+.+.++ .++.+|.|++|+|..
T Consensus 217 ~~~~~-~gI--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~~-- 264 (452)
T TIGR03452 217 TEIAK-KKW--DIRLGRNVTAVEQDG----------------------DGVTLTLDDG-----STVTADVLLVATGRV-- 264 (452)
T ss_pred HHHHh-cCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----CEEEcCEEEEeeccC--
Confidence 55443 466 788899999998654 3345555443 479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 265 -pn~~ 268 (452)
T TIGR03452 265 -PNGD 268 (452)
T ss_pred -cCCC
Confidence 5553
No 270
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.19 E-value=6.3e-06 Score=81.45 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++||+|||+|.+|+++|..|+++|.++++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999863
No 271
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=76.91 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=33.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
+.+|+|||||.+|++.|..|.+.|++++|+|++..+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 5789999999999999999999999999999977553
No 272
>PRK13748 putative mercuric reductase; Provisional
Probab=98.17 E-value=2.1e-05 Score=81.43 Aligned_cols=99 Identities=11% Similarity=0.215 Sum_probs=74.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||+|+.|+.+|..|++.|.+|+++++.. +- .. ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999842 10 00 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++.+++++.+++..+ +.+.+...++ ++.+|.||+|+|.
T Consensus 316 l~~~l~~~gI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~------~i~~D~vi~a~G~-- 363 (561)
T PRK13748 316 VTAAFRAEGI--EVLEHTQASQVAHVD----------------------GEFVLTTGHG------ELRADKLLVATGR-- 363 (561)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CEEEEEecCC------eEEeCEEEEccCC--
Confidence 8888888898 899999999998654 3344443322 5999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 364 -~pn~~ 368 (561)
T PRK13748 364 -APNTR 368 (561)
T ss_pred -CcCCC
Confidence 46654
No 273
>PTZ00058 glutathione reductase; Provisional
Probab=98.17 E-value=3e-05 Score=79.60 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=76.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|...|.+|+|+++.+.+. ..+ ..++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHH
Confidence 3689999999999999999999999999999975321 111 1356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.++ ++..++.+.+++... .+...+...++ ..++.+|.|++|+|.
T Consensus 284 l~~~L~~~GV--~i~~~~~V~~I~~~~---------------------~~~v~v~~~~~----~~~i~aD~VlvA~Gr-- 334 (561)
T PTZ00058 284 LENDMKKNNI--NIITHANVEEIEKVK---------------------EKNLTIYLSDG----RKYEHFDYVIYCVGR-- 334 (561)
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEecC---------------------CCcEEEEECCC----CEEEECCEEEECcCC--
Confidence 7777788898 899999999998654 12233333222 157999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 335 -~Pn~~ 339 (561)
T PTZ00058 335 -SPNTE 339 (561)
T ss_pred -CCCcc
Confidence 46544
No 274
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.17 E-value=3.2e-05 Score=78.35 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=75.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
.+++|||||+.|+.+|..|++.|.+|+++++. .+. ..+ ..++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~~--d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------RGF--DQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------------------ccc--CHHHHHHH
Confidence 57999999999999999999999999999873 210 111 14667778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+..++.++ .+.+++.+..++..+ +...|...++. ...++.+|.|++|+|..
T Consensus 227 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~~~--~~~~i~~D~vl~a~G~~-- 278 (484)
T TIGR01438 227 GEHMEEHGV--KFKRQFVPIKVEQIE----------------------AKVKVTFTDST--NGIEEEYDTVLLAIGRD-- 278 (484)
T ss_pred HHHHHHcCC--EEEeCceEEEEEEcC----------------------CeEEEEEecCC--cceEEEeCEEEEEecCC--
Confidence 888888898 899999888887654 23345444331 12479999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 279 -pn~~ 282 (484)
T TIGR01438 279 -ACTR 282 (484)
T ss_pred -cCCC
Confidence 6554
No 275
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.16 E-value=2.7e-05 Score=78.88 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=75.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHh---CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~---~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (418)
.++++|||||+.|+.+|..+.. .|.+|+|+++.+.+. ..+ ..++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RGF--DSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------ccc--CHHH
Confidence 3689999999999999976654 388999999976331 111 1466
Q ss_pred HHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeec
Q 014821 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (418)
Q Consensus 80 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG 159 (418)
.+.+.+.+++.++ ++.+++.+.+++..+ ++...+.+.++ .++.+|.|++|+|
T Consensus 234 ~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~i~~D~vl~a~G 285 (486)
T TIGR01423 234 RKELTKQLRANGI--NIMTNENPAKVTLNA---------------------DGSKHVTFESG-----KTLDVDVVMMAIG 285 (486)
T ss_pred HHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------------CceEEEEEcCC-----CEEEcCEEEEeeC
Confidence 7778888888898 899999999998654 12234555443 4799999999999
Q ss_pred cCCCCCCCC
Q 014821 160 RFSDVPNIP 168 (418)
Q Consensus 160 ~~~~~p~~p 168 (418)
.. |+..
T Consensus 286 ~~---Pn~~ 291 (486)
T TIGR01423 286 RV---PRTQ 291 (486)
T ss_pred CC---cCcc
Confidence 54 5543
No 276
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.15 E-value=8.4e-06 Score=81.78 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEE
Q 014821 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (418)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~v 154 (418)
.+..+.++|.+.+.+.|+ ++.. ..|+++...+ ++....|.+.++ .++.+|++
T Consensus 152 DR~~fd~~L~~~A~~~Gv--~~~~-g~V~~v~~~~--------------------~g~i~~v~~~~g-----~~i~ad~~ 203 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGV--EVIE-GTVVDVELDE--------------------DGRITAVRLDDG-----RTIEADFF 203 (454)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEE-T-EEEEEE-T--------------------TSEEEEEEETTS-----EEEEESEE
T ss_pred eHHHHHHHHHHHHhcCCC--EEEe-CEEEEEEEcC--------------------CCCEEEEEECCC-----CEEEEeEE
Confidence 588999999999999998 6655 5688888766 012234555555 68999999
Q ss_pred EEeeccCC
Q 014821 155 ILCVGRFS 162 (418)
Q Consensus 155 IlAtG~~~ 162 (418)
|-|+|..+
T Consensus 204 IDASG~~s 211 (454)
T PF04820_consen 204 IDASGRRS 211 (454)
T ss_dssp EE-SGGG-
T ss_pred EECCCccc
Confidence 99999864
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=5.1e-06 Score=81.80 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcce----------ecCCcccc---------ccC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTM----------LQTPKQLY---------QFS 61 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~----------l~~~~~~~---------~~~ 61 (418)
|+.+||+|||||.||+.||.+.++.|.++.++--+.+.=| +..+.|..- +......| +|-
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig-~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG-EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee-ecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 3469999999999999999999999999888776543211 122222110 01111111 110
Q ss_pred CCCCCCC---C-CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEE
Q 014821 62 DYPWPDS---V-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (418)
Q Consensus 62 ~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (418)
-..-..+ + ...-.++..+..+++...+...- -..+...|.++.-++ .....-|.
T Consensus 81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~N--L~l~q~~v~dli~e~--------------------~~~v~GV~ 138 (621)
T COG0445 81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPN--LHLLQGEVEDLIVEE--------------------GQRVVGVV 138 (621)
T ss_pred hccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCC--ceehHhhhHHHhhcC--------------------CCeEEEEE
Confidence 0000000 0 12222455666667766666532 134456777777654 01235567
Q ss_pred EecCCCCceeEEEeCEEEEeeccC
Q 014821 138 VEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 138 ~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.++ ..+.|+.||++||++
T Consensus 139 t~~G-----~~~~a~aVVlTTGTF 157 (621)
T COG0445 139 TADG-----PEFHAKAVVLTTGTF 157 (621)
T ss_pred eCCC-----CeeecCEEEEeeccc
Confidence 7777 689999999999987
No 278
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.14 E-value=4.8e-05 Score=84.86 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
.+||||||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 589999999999999999999999999999999877763
No 279
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=2.3e-05 Score=77.53 Aligned_cols=97 Identities=28% Similarity=0.423 Sum_probs=77.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
+++||||+|+.|+.+|..|+++|++++++|+.+++++... . ..+...+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------~--~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------D--PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh------------------------------h--HHHHHHH
Confidence 6899999999999999999999999999999886653211 0 4677888
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceE---EEEecCCCCceeEEEeCEEEEeecc
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT---VAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
.+..+.+++ .++++..+.+++... +... +...+. ..+.+|.+++++|.
T Consensus 185 ~~~l~~~gi--~~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~~-----~~~~~d~~~~~~g~ 235 (415)
T COG0446 185 AELLEKYGV--ELLLGTKVVGVEGKG----------------------NTLVVERVVGIDG-----EEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHCCc--EEEeCCceEEEEccc----------------------CcceeeEEEEeCC-----cEEEeeEEEEeecc
Confidence 888888888 788999999999865 2111 333444 58999999999994
Q ss_pred C
Q 014821 161 F 161 (418)
Q Consensus 161 ~ 161 (418)
.
T Consensus 236 ~ 236 (415)
T COG0446 236 R 236 (415)
T ss_pred c
Confidence 4
No 280
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.13 E-value=3.3e-05 Score=78.02 Aligned_cols=103 Identities=30% Similarity=0.364 Sum_probs=74.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------------------------------L--EDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------c--hhHHHHHH
Confidence 36899999999999999999999999999999763321 0 11356677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++. + .+.+++++.+++... .....+...+ +...++.+|.||+|+|.
T Consensus 216 ~~~~l~~~-I--~i~~~~~v~~i~~~~---------------------~~~v~~~~~~---~~~~~i~~D~vi~a~G~-- 266 (460)
T PRK06292 216 AQKILSKE-F--KIKLGAKVTSVEKSG---------------------DEKVEELEKG---GKTETIEADYVLVATGR-- 266 (460)
T ss_pred HHHHHhhc-c--EEEcCCEEEEEEEcC---------------------CceEEEEEcC---CceEEEEeCEEEEccCC--
Confidence 77777776 7 799999999998654 1122332212 33357999999999995
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
.|+..
T Consensus 267 -~p~~~ 271 (460)
T PRK06292 267 -RPNTD 271 (460)
T ss_pred -ccCCC
Confidence 46655
No 281
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.11 E-value=1.7e-05 Score=76.38 Aligned_cols=134 Identities=21% Similarity=0.179 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCC-------CCC--CC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWP-------DSV--TT 71 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~--~~ 71 (418)
.++|+|||||.++..++..|.+.+- +|+++-|+..+-..-. ..-...+-.|...-.|...+-. ..+ ..
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~-s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD-SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc-ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 5789999999999999999999764 7999999752211000 0000112222221112111100 000 01
Q ss_pred CCCChhHHHH-----HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCce
Q 014821 72 DFPDHNQVLD-----YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (418)
Q Consensus 72 ~~~~~~~~~~-----~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (418)
.-.+...+.+ |-+.+..+..+ .+..+++|++++..+ ++.|.+++++..++..
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~~---------------------~~~~~l~~~~~~~~~~ 325 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQDG---------------------DGGVRLTLRHRQTGEE 325 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEES----------------------SSEEEEEEETTT--E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEECC---------------------CCEEEEEEEECCCCCe
Confidence 1112222211 11222222233 567789999999887 4589999999888888
Q ss_pred eEEEeCEEEEeecc
Q 014821 147 EVHQVDFVILCVGR 160 (418)
Q Consensus 147 ~~i~~d~vIlAtG~ 160 (418)
.++.+|.||+|||.
T Consensus 326 ~~~~~D~VilATGy 339 (341)
T PF13434_consen 326 ETLEVDAVILATGY 339 (341)
T ss_dssp EEEEESEEEE---E
T ss_pred EEEecCEEEEcCCc
Confidence 99999999999995
No 282
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.11 E-value=5.6e-05 Score=75.42 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=70.7
Q ss_pred cEEEEcCCHHHHHHHHHHHh--------------CCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLL--------------KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~--------------~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 70 (418)
+|+|||||++|+.+|..|+. .+.+|+++++.+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 79999999999999999875 367899999875331
Q ss_pred CCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEE
Q 014821 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (418)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 150 (418)
..+ ...+.+++++..++.++ ++..+++|.+++.+. |.+.++ .++.
T Consensus 224 ~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~~~--------------------------v~~~~g-----~~i~ 268 (424)
T PTZ00318 224 GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLDKE--------------------------VVLKDG-----EVIP 268 (424)
T ss_pred ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeCCE--------------------------EEECCC-----CEEE
Confidence 111 13567788888888899 899999999886433 555555 4899
Q ss_pred eCEEEEeeccC
Q 014821 151 VDFVILCVGRF 161 (418)
Q Consensus 151 ~d~vIlAtG~~ 161 (418)
+|.||+|+|..
T Consensus 269 ~d~vi~~~G~~ 279 (424)
T PTZ00318 269 TGLVVWSTGVG 279 (424)
T ss_pred ccEEEEccCCC
Confidence 99999999965
No 283
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.11 E-value=2.1e-05 Score=84.29 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+++|+++.+.+.. ..+ .......+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~------------------------------~~l--d~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA------------------------------KQL--DQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh------------------------------hhc--CHHHHHHH
Confidence 6799999999999999999999999999998652210 000 13456667
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
....++.|+ .+.+++.++++.... ....|.+.++ .++.+|.||+|+|..
T Consensus 189 ~~~l~~~GV--~v~~~~~v~~i~~~~----------------------~~~~v~~~dG-----~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 189 QRELEQKGL--TFLLEKDTVEIVGAT----------------------KADRIRFKDG-----SSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHcCC--EEEeCCceEEEEcCC----------------------ceEEEEECCC-----CEEEcCEEEECCCCC
Confidence 777788899 899999998887543 2234555555 479999999999954
No 284
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.11 E-value=3.9e-05 Score=78.08 Aligned_cols=99 Identities=24% Similarity=0.236 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+++++.. +. ..+ ..++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~~--d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL-------------------------------RGF--DRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc-------------------------------ccC--CHHHHHHH
Confidence 589999999999999999999999999998731 10 001 13566777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
.+.+++.++ .+..++.+..++... +...+.+.++ .++.+|.|++|+|..
T Consensus 229 ~~~l~~~GV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~~-- 277 (499)
T PTZ00052 229 VEYMKEQGT--LFLEGVVPINIEKMD----------------------DKIKVLFSDG-----TTELFDTVLYATGRK-- 277 (499)
T ss_pred HHHHHHcCC--EEEcCCeEEEEEEcC----------------------CeEEEEECCC-----CEEEcCEEEEeeCCC--
Confidence 788888898 899999988887654 2244554444 368999999999954
Q ss_pred CCCCC
Q 014821 164 VPNIP 168 (418)
Q Consensus 164 ~p~~p 168 (418)
|+..
T Consensus 278 -pn~~ 281 (499)
T PTZ00052 278 -PDIK 281 (499)
T ss_pred -CCcc
Confidence 5544
No 285
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.09 E-value=2.6e-05 Score=79.68 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.||..++ +.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 479999999999999999997 569999999775
No 286
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.09 E-value=6e-06 Score=88.24 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=59.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCC---Cccc---cccCCcceecCC------------ccccc--cC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI---GGAW---IKTVETTMLQTP------------KQLYQ--FS 61 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~---gg~~---~~~~~~~~l~~~------------~~~~~--~~ 61 (418)
++|+|||||++|+++|..|+++ |++|+|+|+++.. |... ......+....+ ...+. +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 4799999999999999999998 8999999998753 3211 000000000000 00000 00
Q ss_pred CCCCCCCCCC-CCCChhHHHHHHHHHHHhcCcccceEeeeEEEEE
Q 014821 62 DYPWPDSVTT-DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGI 105 (418)
Q Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i 105 (418)
.......... ....+..+.+.|.+.+.+.++ .++++++|+++
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i 123 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDD 123 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCch
Confidence 0000000001 124678899999999988888 78888776554
No 287
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.06 E-value=4.9e-05 Score=71.82 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|++|+.+|..|++.+.+|+++++.+.+. ....
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~~~---- 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AEKI---- 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cCHH----
Confidence 3689999999999999999999999999999964110 0012
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+.+. ++ .+.+++.+.+++... ....+.+.+..++..+++.+|.||+|+|..
T Consensus 182 ~~~~l~~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 182 LLDRLRKNPNI--EFLWNSTVKEIVGDN----------------------KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred HHHHHHhCCCe--EEEeccEEEEEEccC----------------------cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 22333444 77 788888999987543 222344444333555789999999999954
No 288
>PRK10262 thioredoxin reductase; Provisional
Probab=98.06 E-value=5.6e-05 Score=72.53 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=72.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 3689999999999999999999999999999964210 01234455
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC-CCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK-NHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+..++.++ .+..++.++++.... ...-.|.+.+.. .+...++.+|.||+|+|..
T Consensus 191 ~~~~l~~~gV--~i~~~~~v~~v~~~~---------------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 191 LMDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHhhccCCCe--EEEeCCEEEEEEcCC---------------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 5666666677 788889999987543 122235554432 2334689999999999954
No 289
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.06 E-value=3.6e-05 Score=82.71 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=74.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+.. .. -..+....+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------------------------------~~--ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------------------------------EQ--LDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------------------------------hh--cCHHHHHHH
Confidence 5799999999999999999999999999999652210 00 113566778
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
++..++.|+ .+++++.+.++.... ......+...++ ..+.+|.||+|+|..
T Consensus 194 ~~~L~~~GV--~v~~~~~v~~I~~~~--------------------~~~~~~v~~~dG-----~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 194 RRKIESMGV--RVHTSKNTLEIVQEG--------------------VEARKTMRFADG-----SELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHCCC--EEEcCCeEEEEEecC--------------------CCceEEEEECCC-----CEEEcCEEEECCCcc
Confidence 888888899 899999999997543 012234555555 479999999999954
No 290
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.06 E-value=4.6e-05 Score=77.97 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=71.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|+..+.+|+++++.+.+. . ...+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHHH
Confidence 689999999999999999999999999999864220 0 1123
Q ss_pred HHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 84 QSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 84 ~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
...+++ .++ .+++++.+.++...+ +....|.+.+..++..+++.||.|++|+|..
T Consensus 394 ~~~l~~~~gV--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~- 449 (515)
T TIGR03140 394 QDKLKSLPNV--DILTSAQTTEIVGDG---------------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV- 449 (515)
T ss_pred HHHHhcCCCC--EEEECCeeEEEEcCC---------------------CEEEEEEEEECCCCcEEEEEcCEEEEEeCCc-
Confidence 333443 477 889999999987653 1222366655544556789999999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 450 --Pn~~ 453 (515)
T TIGR03140 450 --PNTE 453 (515)
T ss_pred --CCch
Confidence 5543
No 291
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.05 E-value=6.2e-05 Score=78.54 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=74.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. . -..++..++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------------------------------~--~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------------------------------L--LDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------c--CCHHHHHHH
Confidence 5899999999999999999999999999999764321 0 113566666
Q ss_pred HHHH-HhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCC---C-C------ceeEEEeC
Q 014821 84 QSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK---N-H------STEVHQVD 152 (418)
Q Consensus 84 ~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~-~------~~~~i~~d 152 (418)
.... ++.++ .+..++.|.+++... ......+...+.. + + ..+++.+|
T Consensus 360 ~~~ll~~~GV--~I~~~~~V~~I~~~~--------------------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 360 ERVFLKSKPV--RVHLNTLIEYVRAGK--------------------GNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred HHHHhhcCCc--EEEcCCEEEEEEecC--------------------CceEEEEEEeccccccccccccccccceEEEcC
Confidence 6654 55788 899999999998654 0111334332211 0 1 12479999
Q ss_pred EEEEeeccCCCCCCCCC
Q 014821 153 FVILCVGRFSDVPNIPE 169 (418)
Q Consensus 153 ~vIlAtG~~~~~p~~p~ 169 (418)
.|++|+|. .|+...
T Consensus 418 ~VlvAtGr---~Pnt~~ 431 (659)
T PTZ00153 418 SCLVATGR---KPNTNN 431 (659)
T ss_pred EEEEEECc---ccCCcc
Confidence 99999995 466543
No 292
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.05 E-value=6.8e-05 Score=81.66 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=32.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+||+|||+|.|||.+|..+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999763
No 293
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=75.07 Aligned_cols=38 Identities=37% Similarity=0.671 Sum_probs=34.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~ 41 (418)
+.+|+|||+|++||++|+.|.++ .+|++||.+...||.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 57999999999999999999864 799999999998884
No 294
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.04 E-value=5.5e-06 Score=83.28 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=37.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||+|||+||+.|++.| .+|+|+|+++++||..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997665
No 295
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.04 E-value=6.6e-05 Score=70.89 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=31.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..||+|||||.+|.++|..|++.|.+|.||||.-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4799999999999999999999999999999953
No 296
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.03 E-value=6e-05 Score=78.12 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHH----hCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLL----LKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~----~~~~~v~iie~~~ 36 (418)
||+|||+|.|||.||..++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 7999999999999999998 6799999999965
No 297
>PLN02568 polyamine oxidase
Probab=98.02 E-value=7.4e-06 Score=83.75 Aligned_cols=44 Identities=36% Similarity=0.543 Sum_probs=39.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-----CceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-----FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-----~~v~iie~~~~~gg~~~~ 44 (418)
|+.+||+|||||++||++|+.|.+.| ++|+|+|+++.+||.+..
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 35689999999999999999999887 899999999999997766
No 298
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.02 E-value=4.3e-05 Score=78.17 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~g 39 (418)
.++||+|||||.|||.||..++..|.+|+|+|+....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 36899999999999999999999999999999977544
No 299
>PLN02268 probable polyamine oxidase
Probab=98.01 E-value=8e-06 Score=81.84 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=37.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.+|+|||||.|||++|+.|.+.|++|+|+|+++++||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997554
No 300
>PLN02546 glutathione reductase
Probab=98.01 E-value=7.6e-05 Score=76.68 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=74.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||+.|+.+|..|...+.+|+|+++.+.+. .. ...++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999865331 00 11466677
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..++.|+ ++..++.+.++.... ++...+...++ ....+|.||+|+|..
T Consensus 299 l~~~L~~~GV--~i~~~~~v~~i~~~~---------------------~g~v~v~~~~g-----~~~~~D~Viva~G~~- 349 (558)
T PLN02546 299 VAEQMSLRGI--EFHTEESPQAIIKSA---------------------DGSLSLKTNKG-----TVEGFSHVMFATGRK- 349 (558)
T ss_pred HHHHHHHCCc--EEEeCCEEEEEEEcC---------------------CCEEEEEECCe-----EEEecCEEEEeeccc-
Confidence 7777888898 899999999997644 12233332221 344589999999954
Q ss_pred CCCCCC
Q 014821 163 DVPNIP 168 (418)
Q Consensus 163 ~~p~~p 168 (418)
|+..
T Consensus 350 --Pnt~ 353 (558)
T PLN02546 350 --PNTK 353 (558)
T ss_pred --cCCC
Confidence 5543
No 301
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.00 E-value=8.9e-06 Score=82.13 Aligned_cols=42 Identities=36% Similarity=0.565 Sum_probs=38.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~ 44 (418)
++||+|||||++||++|+.|.++ |.+|+|+|+++++||..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 47999999999999999999998 9999999999999997655
No 302
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.97 E-value=1.7e-05 Score=78.24 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=37.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC--CceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~--~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||.+||++|+.|.+++ .+++|||+.+++||..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 46999999999999999999998 899999999999987666
No 303
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.95 E-value=1.2e-05 Score=77.99 Aligned_cols=42 Identities=40% Similarity=0.701 Sum_probs=37.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~ 44 (418)
..+|||||||.|||+||.+|.+.|+ ++.|+|..+++||.-+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 3589999999999999999998775 89999999999997665
No 304
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.95 E-value=1.2e-05 Score=81.80 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=42.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCcceecC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQT 53 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l~~ 53 (418)
+||+|||||.+||++|..|++.|++|+|+|+++.+||.... ..++..+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~ 52 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDV 52 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEee
Confidence 68999999999999999999999999999999999986555 445544433
No 305
>PRK07233 hypothetical protein; Provisional
Probab=97.94 E-value=1e-05 Score=80.90 Aligned_cols=40 Identities=43% Similarity=0.646 Sum_probs=37.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++||++|+.|++.|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6899999999999999999999999999999999997544
No 306
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.94 E-value=0.00011 Score=73.68 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=28.5
Q ss_pred EEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 8 IIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|||+|.+|+++|..+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 307
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.93 E-value=0.00011 Score=75.22 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||.+|+.+|..|+..+.+|+++++.+.+. . . .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~-~---~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A-D---QV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c-c---HH
Confidence 3689999999999999999999999999999864220 0 0 12
Q ss_pred HHHHHHh-cCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...... .++ ++.+++.++++...+ +..-.+.+.+..++..+++.||.|++|+|..
T Consensus 392 l~~~l~~~~gI--~i~~~~~v~~i~~~~---------------------g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 392 LQDKLRSLPNV--TIITNAQTTEVTGDG---------------------DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHhcCCCc--EEEECcEEEEEEcCC---------------------CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 3333333 477 789999999998653 1222355665555666789999999999965
No 308
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.92 E-value=5.8e-05 Score=74.29 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=33.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+|+|||||.+|+.+|..|+++|++|+|||+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4799999999999999999999999999998776543
No 309
>PLN02676 polyamine oxidase
Probab=97.90 E-value=1.8e-05 Score=80.26 Aligned_cols=47 Identities=36% Similarity=0.527 Sum_probs=41.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccc-cCCcc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK-TVETT 49 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~-~~~~~ 49 (418)
.+||+|||||++||++|+.|+++|. +++|+|+++++||.+.. .+++.
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 4799999999999999999999998 69999999999997765 44443
No 310
>PLN02576 protoporphyrinogen oxidase
Probab=97.89 E-value=1.9e-05 Score=80.55 Aligned_cols=42 Identities=48% Similarity=0.667 Sum_probs=38.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~gg~~~~ 44 (418)
.+||+|||||++||++|+.|.+. |++|+|+|+++++||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 47899999999999999999999 9999999999999986554
No 311
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.86 E-value=0.00017 Score=61.46 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=27.7
Q ss_pred EEEcCCCCHHHHHHHHhhhc--CCCCCeEEEEecCc
Q 014821 207 TVVGLQKSALDIAMECTTAN--GLENPCTVLYRTEH 240 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~--~~~~~V~~~~r~~~ 240 (418)
+|||+|.+|+-++..|.... ....+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999884 33356999998653
No 312
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.86 E-value=1.8e-05 Score=77.00 Aligned_cols=41 Identities=34% Similarity=0.488 Sum_probs=37.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 79999999999999999999999999999999889885433
No 313
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.85 E-value=2.1e-05 Score=80.18 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=41.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc-cCCccee
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTML 51 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~-~~~~~~l 51 (418)
+||+|||||.+||++|..|+++|++|+|+|+++.+||.... ..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~f 49 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRF 49 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEE
Confidence 58999999999999999999999999999999999986555 3344443
No 314
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.8e-05 Score=78.05 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=37.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
++|+|+|||.|||++|..|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 57999999999999999999999999999999999985443
No 315
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.84 E-value=1.8e-05 Score=80.04 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=36.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC------CCceEEEeeCCCCCccccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~------~~~v~iie~~~~~gg~~~~ 44 (418)
++|+|||||++||++|+.|.+. +.+|+|+|+++++||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 6799999999999999999985 3799999999999997555
No 316
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.84 E-value=2e-05 Score=80.47 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=36.6
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|||||||.+||++|..|++.|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 699999999999999999999999999999999997555
No 317
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.83 E-value=0.00026 Score=69.14 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=65.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHh----CC--CceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChh
Q 014821 4 KQIAIVGAGVSGLLACKYLLL----KG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~----~~--~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (418)
++|+|||+|++|+.+|..|++ .+ .+|+|+ ..+.+. .. ...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------~~--~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------PG--FPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------------cc--CCH
Confidence 589999999999999999975 34 478888 322110 00 113
Q ss_pred HHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEe
Q 014821 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (418)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlA 157 (418)
.+...+.+..++.++ ++..++++.+++.. .+.+.++ .++.+|.||+|
T Consensus 192 ~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~--------------------------~v~~~~g-----~~i~~D~vi~a 238 (364)
T TIGR03169 192 KVRRLVLRLLARRGI--EVHEGAPVTRGPDG--------------------------ALILADG-----RTLPADAILWA 238 (364)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeeEEEcCC--------------------------eEEeCCC-----CEEecCEEEEc
Confidence 556677778888898 88998888887522 2555554 58999999999
Q ss_pred eccC
Q 014821 158 VGRF 161 (418)
Q Consensus 158 tG~~ 161 (418)
+|..
T Consensus 239 ~G~~ 242 (364)
T TIGR03169 239 TGAR 242 (364)
T ss_pred cCCC
Confidence 9965
No 318
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.80 E-value=2.1e-05 Score=78.32 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=41.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
|+.+||+|||+|.+|+.+|..|++.|++|+++|+++..||.|..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 35799999999999999999999999999999999999998876
No 319
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=6.7e-05 Score=69.33 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=54.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCc-ceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVET-TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
++|++|||||.+|+.+|..|+++|.+|.|+|+++.+||-....... ..+..=. .+...+..+...+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk-----------YGpHIFHT~~~~Vwd 69 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK-----------YGPHIFHTDNKRVWD 69 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee-----------ccCceeecCchHHHH
Confidence 4799999999999999998899999999999999999987663321 2221100 000133345568888
Q ss_pred HHHHHHHh
Q 014821 82 YIQSYASH 89 (418)
Q Consensus 82 ~l~~~~~~ 89 (418)
|+.++.+-
T Consensus 70 yv~~F~e~ 77 (374)
T COG0562 70 YVNQFTEF 77 (374)
T ss_pred HHhhhhhh
Confidence 88887654
No 320
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00012 Score=73.79 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCE
Q 014821 74 PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDF 153 (418)
Q Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~ 153 (418)
.+...+.+.+...++++|. .++.++.|++|.-.. ++.+-|.+..+ .+++.+
T Consensus 184 ~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------------~~~~gVeT~~G------~iet~~ 234 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA--LVIENCPVTGLHVET---------------------DKFGGVETPHG------SIETEC 234 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------------CCccceeccCc------ceecce
Confidence 3556677888889999999 899999999998876 45667777776 699999
Q ss_pred EEEeeccCC
Q 014821 154 VILCVGRFS 162 (418)
Q Consensus 154 vIlAtG~~~ 162 (418)
+|.|+|.+.
T Consensus 235 ~VNaaGvWA 243 (856)
T KOG2844|consen 235 VVNAAGVWA 243 (856)
T ss_pred EEechhHHH
Confidence 999999763
No 321
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.75 E-value=0.00022 Score=69.84 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
||+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999988 99999999763
No 322
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.72 E-value=0.00031 Score=68.40 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
..||++|+|..|+.+|..|...+.++++|++.+.+- .. .-...+.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~------------------------------~~--lf~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL------------------------------PR--LFGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccch------------------------------hh--hhhHHHHHHH
Confidence 569999999999999999999999999999975220 00 1124677777
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
..+.++.++ ++..++.+.+++.+. .+..-.|.+.++ .++.||.||+.+|+
T Consensus 262 ~~y~e~kgV--k~~~~t~~s~l~~~~--------------------~Gev~~V~l~dg-----~~l~adlvv~GiG~--- 311 (478)
T KOG1336|consen 262 EDYYENKGV--KFYLGTVVSSLEGNS--------------------DGEVSEVKLKDG-----KTLEADLVVVGIGI--- 311 (478)
T ss_pred HHHHHhcCe--EEEEecceeecccCC--------------------CCcEEEEEeccC-----CEeccCeEEEeecc---
Confidence 888888898 899999999998877 123345667777 69999999999995
Q ss_pred CCCCCCCC
Q 014821 164 VPNIPEFP 171 (418)
Q Consensus 164 ~p~~p~~~ 171 (418)
.|+.+-+.
T Consensus 312 ~p~t~~~~ 319 (478)
T KOG1336|consen 312 KPNTSFLE 319 (478)
T ss_pred cccccccc
Confidence 57766544
No 323
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.70 E-value=0.00039 Score=67.58 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=29.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++++|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999998987 99999854
No 324
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.69 E-value=4.4e-05 Score=76.95 Aligned_cols=40 Identities=48% Similarity=0.765 Sum_probs=37.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++||++|..|.++|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997554
No 325
>PLN02529 lysine-specific histone demethylase 1
Probab=97.69 E-value=4.6e-05 Score=80.09 Aligned_cols=43 Identities=40% Similarity=0.631 Sum_probs=39.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
..++|+|||||++||++|..|++.|++|+|+|+++++||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 3579999999999999999999999999999999988886554
No 326
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.67 E-value=0.0019 Score=64.90 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.66 E-value=0.0015 Score=65.88 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|+.+|..|.+.|. +|+++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999987 899999864
No 328
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.60 E-value=0.00031 Score=64.71 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=33.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g 39 (418)
+++|+||||||..|++.|+.|.-+ +.+|.|+|+..+++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 468999999999999999999876 78999999987664
No 329
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.59 E-value=0.0015 Score=60.85 Aligned_cols=41 Identities=27% Similarity=0.517 Sum_probs=35.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--CCCcc
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGGA 41 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--~~gg~ 41 (418)
|...|++|||+|.+||.+|..|+..|++|+|+|... .+||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 457899999999999999999999999999999765 45554
No 330
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.58 E-value=5.6e-05 Score=74.25 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=34.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg 40 (418)
.+||+|||||.+|..+|.-.+-+|.++.++|+++...|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 48999999999999999999999999999999876554
No 331
>PRK12831 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.0023 Score=64.58 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..|.+.|.+|+++.+.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 332
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.54 E-value=0.00078 Score=69.62 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=31.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||||+.|+.+|..|.+.+.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999964
No 333
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.53 E-value=0.00066 Score=61.91 Aligned_cols=37 Identities=32% Similarity=0.566 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC------CceEEEeeCCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG------FHPIVFEARSDIG 39 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~------~~v~iie~~~~~g 39 (418)
.++|+|+|||..|+..|++|.+++ .+++|||...-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 579999999999999999999986 6899999865433
No 334
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.51 E-value=0.00013 Score=71.52 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
++||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 479999999999999999999999999999987644
No 335
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00012 Score=77.41 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=38.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+++|+.|.+.|++|+|+|++.++||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 578999999999999999999999999999999999886444
No 336
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.50 E-value=0.00012 Score=74.11 Aligned_cols=40 Identities=40% Similarity=0.550 Sum_probs=36.7
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986444
No 337
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.50 E-value=0.00038 Score=66.63 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCcccccCCC--CCC-CcchhhhhhHHHHHhhcCCC-chhHHHHH
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYF--PWG-FPLAYLYLNRFAELLVHKPG-EGFLLSLL 278 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~~~~~~~~--~~g-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (418)
...|+|||+|++|+-+|..+..+|.. |.++.+.+.. ..... ..| =.+.+... ..+++.+-|. ..+++
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~-GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~--- 73 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKL-GRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLK--- 73 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccc-cceeEecCCCCcccccccc--HHHHHHhCCCcchHHH---
Confidence 35799999999999999999888765 9999886531 11100 000 11111111 2233333331 12222
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhhcccCCCCCc-ccccccccccccccCcchhhhhccCcEEEeccC-ceeEecCc---
Q 014821 279 ATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH-SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG--- 353 (418)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v~~~~~~~--- 353 (418)
..++.+-...+.......+..+.-+. +.....+.. -..+-+.++..+++.+|+++..+ |..+..+.
T Consensus 74 --------sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f 144 (408)
T COG2081 74 --------SALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF 144 (408)
T ss_pred --------HHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE
Confidence 23333333333222222222211111 000000000 01122356678889999999987 87877652
Q ss_pred -EEEcCCceeeeccEEEEccCCCCCc
Q 014821 354 -IVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 354 -v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
+.+.+|++ +.+|.+|+|||=.+-+
T Consensus 145 ~l~t~~g~~-i~~d~lilAtGG~S~P 169 (408)
T COG2081 145 RLDTSSGET-VKCDSLILATGGKSWP 169 (408)
T ss_pred EEEcCCCCE-EEccEEEEecCCcCCC
Confidence 66678887 9999999999955443
No 338
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.49 E-value=0.00018 Score=68.99 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=72.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--------------CCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSV 69 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--------------~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (418)
-.+|||||||+|+..|..|+.. .++|+++|+.+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 3689999999999999999752 34799999875221
Q ss_pred CCCCCChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEE
Q 014821 70 TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH 149 (418)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i 149 (418)
.. -...+.+|.+....+.++ .+..++.|..+.... ++...+ +|+..+|
T Consensus 269 -~m--Fdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~~--------------------------I~~~~~-~g~~~~i 316 (491)
T KOG2495|consen 269 -NM--FDKRLVEYAENQFVRDGI--DLDTGTMVKKVTEKT--------------------------IHAKTK-DGEIEEI 316 (491)
T ss_pred -HH--HHHHHHHHHHHHhhhccc--eeecccEEEeecCcE--------------------------EEEEcC-CCceeee
Confidence 00 013455666666666677 788888888887655 444443 4667899
Q ss_pred EeCEEEEeeccCCCCCCCCC
Q 014821 150 QVDFVILCVGRFSDVPNIPE 169 (418)
Q Consensus 150 ~~d~vIlAtG~~~~~p~~p~ 169 (418)
.|-.+|.|||.. .+|.+-.
T Consensus 317 PYG~lVWatG~~-~rp~~k~ 335 (491)
T KOG2495|consen 317 PYGLLVWATGNG-PRPVIKD 335 (491)
T ss_pred cceEEEecCCCC-Cchhhhh
Confidence 999999999987 4665433
No 339
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.48 E-value=0.0018 Score=62.15 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=74.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccccccCCccee--cCCccccccCCCCC-------CCCC-
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIKTVETTML--QTPKQLYQFSDYPW-------PDSV- 69 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~~~~~~~~~l--~~~~~~~~~~~~~~-------~~~~- 69 (418)
..|+|||+|.++..+...|... ..++.++-|+..+- ...|..+.+ -+|...-.|...+- ....
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~---p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~ 264 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL---PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRL 264 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC---ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCc
Confidence 3499999999999999999874 23566777765221 111111111 11222111211110 0000
Q ss_pred CCCCCChhHHHHHHHHHH-HhcCc-cc--ceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCc
Q 014821 70 TTDFPDHNQVLDYIQSYA-SHFDL-RK--HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (418)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~-~~~~~-~~--~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (418)
...-.+.+.+.+.....- ++.+- .. .+.-+++|.+++... ++.+.++++..++++
T Consensus 265 ~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G---------------------~g~~~l~~~~~~~~~ 323 (436)
T COG3486 265 LYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAG---------------------DGRYRLTLRHHETGE 323 (436)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCC---------------------CceEEEEEeeccCCC
Confidence 111112223332221111 12211 11 455678888888776 355899999988899
Q ss_pred eeEEEeCEEEEeeccC
Q 014821 146 TEVHQVDFVILCVGRF 161 (418)
Q Consensus 146 ~~~i~~d~vIlAtG~~ 161 (418)
.+++.+|.||+|||..
T Consensus 324 ~~t~~~D~vIlATGY~ 339 (436)
T COG3486 324 LETVETDAVILATGYR 339 (436)
T ss_pred ceEEEeeEEEEecccc
Confidence 9999999999999965
No 340
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00036 Score=67.70 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.+||||||||.||..+|.+.++.|.+.+++-.+-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 5799999999999999999999999988887653
No 341
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.46 E-value=0.00016 Score=70.15 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=33.6
Q ss_pred chhhhhcc-CcEEEeccCceeEec-C----cEEEcCCceeeeccEEEEccCC
Q 014821 329 KFYDKVEE-GSIILKKSQDFSFCE-D----GIVVDGQTTPLKTDLVILATGF 374 (418)
Q Consensus 329 ~~~~~~~~-~~v~~~~~~v~~~~~-~----~v~~~~g~~~~~~D~Vi~atG~ 374 (418)
.+.+.+++ .+|+++.+.|..+.- + +|.+.+|+. +.+|.||+|||.
T Consensus 100 ~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~-~~a~~vVlaTGt 150 (392)
T PF01134_consen 100 AMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEE-IEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEE-EEECEEEE-TTT
T ss_pred HHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCE-EecCEEEEeccc
Confidence 34455554 899999888777642 2 488899998 999999999999
No 342
>PLN02487 zeta-carotene desaturase
Probab=97.46 E-value=0.00015 Score=74.47 Aligned_cols=42 Identities=36% Similarity=0.539 Sum_probs=38.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 359999999999999999999999999999999999986544
No 343
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.43 E-value=0.0047 Score=66.28 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++|||||||..|+-+|..|.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999864
No 344
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.38 E-value=0.0027 Score=61.71 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.++...++++.+.+|. ++.|+++|.+++..+ +....|.+.++ .++.+|+||+
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------------~~~~~v~~~~g-----~~i~~~~vvl 224 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------------NEVLGVKLTKG-----EEIEADYVVL 224 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------------CceEEEEccCC-----cEEecCEEEE
Confidence 4556778888889998 899999999999877 23456777776 6999999999
Q ss_pred eeccCC
Q 014821 157 CVGRFS 162 (418)
Q Consensus 157 AtG~~~ 162 (418)
|.|..+
T Consensus 225 A~Grsg 230 (486)
T COG2509 225 APGRSG 230 (486)
T ss_pred ccCcch
Confidence 999874
No 345
>PRK06847 hypothetical protein; Provisional
Probab=97.37 E-value=0.001 Score=65.07 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.++|+|||+|.+|+-+|..|...|.. |+++.+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 56899999999999999999888765 999998764
No 346
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.35 E-value=0.00034 Score=71.05 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999853
No 347
>PLN02612 phytoene desaturase
Probab=97.33 E-value=0.00026 Score=73.23 Aligned_cols=41 Identities=41% Similarity=0.704 Sum_probs=37.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
.++|+|||||++||++|+.|.++|++++|+|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 47899999999999999999999999999999998888643
No 348
>PLN03000 amine oxidase
Probab=97.33 E-value=0.00028 Score=74.93 Aligned_cols=42 Identities=43% Similarity=0.642 Sum_probs=39.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+.+|..|.+.|++++|+|+++++||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 479999999999999999999999999999999999997665
No 349
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.32 E-value=0.00026 Score=73.10 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=35.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC--CCCc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGG 40 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~--~~gg 40 (418)
.+||+|||+|.+||++|..+++.|.+|+|||+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
No 350
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.26 E-value=0.0036 Score=58.48 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~ 37 (418)
.+||+|||||-.|.+.|.-|.++ |++|+++|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 57999999999999999998763 789999999874
No 351
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.24 E-value=0.00028 Score=66.74 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=29.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
||++|||+|++|..+|.+|++.+ .+|+|+|+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 69999999999999999999987 6999999975
No 352
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.23 E-value=0.00025 Score=69.90 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=32.3
Q ss_pred cCcchhhhhccCcEEEeccC-ceeEe--cCc---EEEcCCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ-DFSFC--EDG---IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~-v~~~~--~~~---v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+-+.+...+++.+++++.+. |..+. +++ |.++++.+ +.+|.||+|||-..-
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~-~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE-YEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEE-EEESEEEE----SSS
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccc-ccCCEEEEecCCCCc
Confidence 34566677888899999987 77774 344 55656666 999999999997754
No 353
>PLN02976 amine oxidase
Probab=97.22 E-value=0.0004 Score=76.53 Aligned_cols=42 Identities=48% Similarity=0.705 Sum_probs=39.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
.++|+|||||++|+++|..|.+.|++++|||+++.+||.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 478999999999999999999999999999999999997666
No 354
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.21 E-value=0.0041 Score=61.57 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=34.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeCCCCCccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAW 42 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~~~~gg~~ 42 (418)
.++.=|||+|.|+|++|.+|.+- |.+|+|+|+.+..||..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 46778999999999999999984 55999999999888743
No 355
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.18 E-value=0.00044 Score=70.41 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=36.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~ 42 (418)
+||+|||+|++|+.+|+.|++.|++|++||+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999888766
No 356
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.17 E-value=0.00088 Score=65.54 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.1
Q ss_pred CceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 345 QDFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 345 ~v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+..++.++|++++|++ +.+|.||.|.|..+.
T Consensus 108 ~V~~v~~~~v~l~dg~~-~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 108 KAVGLDADGVDLAPGTR-INARSVIDCRGFKPS 139 (370)
T ss_pred EEEEEeCCEEEECCCCE-EEeeEEEECCCCCCC
Confidence 47788888899999998 999999999998864
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.16 E-value=0.016 Score=61.18 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||+|..|+.+|..|.+.|. +|+|+.+.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999886 699999864
No 358
>PLN02463 lycopene beta cyclase
Probab=97.16 E-value=0.0016 Score=65.26 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=35.2
Q ss_pred chhhhhccCcEEEeccCceeEecC----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 329 KFYDKVEEGSIILKKSQDFSFCED----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 329 ~~~~~~~~~~v~~~~~~v~~~~~~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+.+++++...+..++.+ .|++++|.+ +++|.||.|+|..+.
T Consensus 119 ~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~-i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 119 KMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVK-IQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCE-EEcCEEEECcCCCcC
Confidence 444555566788876666666532 377889988 999999999999865
No 359
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.11 E-value=0.0058 Score=64.51 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 589999999999999999999886 699988864
No 360
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.10 E-value=0.0053 Score=67.07 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999999999999998864
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.09 E-value=0.012 Score=59.53 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
++|+|||+|..|+.+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 689999999999999999888876 68866654
No 362
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.09 E-value=0.018 Score=58.24 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++++|||+|..|+.+|..+.+.|. +|+|+++++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 689999999999999999999885 799999865
No 363
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00097 Score=61.11 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCC-------CceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~-------~~v~iie~~~ 36 (418)
|...+|+|||+|..|++.|.++.+.. .++.|++.+.
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 56789999999999999999988842 4788887655
No 364
>PRK09897 hypothetical protein; Provisional
Probab=97.04 E-value=0.0063 Score=62.16 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||+|.+|+-+|..|+..+.. -+|+++.++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCC
Confidence 5899999999999999999875432 46999998653
No 365
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.00 E-value=0.0018 Score=63.54 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=36.1
Q ss_pred chhhhhccCcEEEeccCceeEecCc----EEEcCCceeeeccEEEEccCCCCC
Q 014821 329 KFYDKVEEGSIILKKSQDFSFCEDG----IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 329 ~~~~~~~~~~v~~~~~~v~~~~~~~----v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.++++..+...|..++.++ |++++|++ +.++.||-|+|..+.
T Consensus 92 ~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~-i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 92 FLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRT-IRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCE-EEeeEEEECCCcccc
Confidence 3344555567777777788887654 57889998 999999999997655
No 366
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.98 E-value=0.0009 Score=64.34 Aligned_cols=42 Identities=38% Similarity=0.535 Sum_probs=35.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC--ceEEEeeCCCCCccccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIK 44 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~--~v~iie~~~~~gg~~~~ 44 (418)
.++|+|+|||.+||++|++|++..- .++++|+.+++||-.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 3789999999999999999999865 46779999998864333
No 367
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.95 E-value=0.00089 Score=67.51 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhh--hcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTT--ANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~--~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|.+|+.+|..|+. .+. +|+++.+.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCC
Confidence 457899999999999999999986 444 5999998763
No 368
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0098 Score=58.55 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+.+|..|++.-.....|.++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 5899999999999999999986554344899888764
No 369
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.90 E-value=0.00062 Score=59.22 Aligned_cols=55 Identities=27% Similarity=0.568 Sum_probs=42.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC--CCceEEEeeCCCCC-ccccc--cCCcceecCCcccc
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG-GAWIK--TVETTMLQTPKQLY 58 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~--~~~v~iie~~~~~g-g~~~~--~~~~~~l~~~~~~~ 58 (418)
.||+|||+|.+||++|+...++ ..++.|||..-.+| |.|.- .+....+..|+.++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLF 136 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLF 136 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHH
Confidence 5999999999999999999865 56899999977665 46776 55555556666543
No 370
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0012 Score=61.32 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++||+|||||.+|++++..|.++|++++|+...-
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999999853
No 371
>PRK05868 hypothetical protein; Validated
Probab=96.86 E-value=0.003 Score=61.89 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||+|..|.-+|..|+..|.. |+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCC
Confidence 5799999999999999999988765 999999864
No 372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.86 E-value=0.008 Score=66.36 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=65.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
++|+|||+|+.|+.+|..|++.|. .++|+|..+.+ ...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~~ 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SPE 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hHH
Confidence 689999999999999999999996 57888875311 112
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+...+++.++ .++.++.++.+..+. ..-.|.+... ++...++.||.|+++.|..
T Consensus 357 l~~~L~~~GV--~i~~~~~v~~i~g~~----------------------~v~~V~l~~~-~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 357 ARAEARELGI--EVLTGHVVAATEGGK----------------------RVSGVAVARN-GGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HHHHHHHcCC--EEEcCCeEEEEecCC----------------------cEEEEEEEec-CCceEEEECCEEEEcCCcC
Confidence 3344566788 888888898887543 2122444321 1334689999999999954
No 373
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.84 E-value=0.0021 Score=69.67 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|.+|+.+|..|+..|.. |+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccc
Confidence 3578999999999999999999998865 999997653
No 374
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0047 Score=57.56 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=34.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
|....|-|||||.||..+|+.++++|+.|.++|-++.-
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56678999999999999999999999999999987643
No 375
>PRK02106 choline dehydrogenase; Validated
Probab=96.78 E-value=0.0014 Score=67.94 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=32.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHh-CCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~-~~~~v~iie~~~ 36 (418)
.+|+||||+|.+|+.+|..|++ .+.+|+|||+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5799999999999999999999 799999999985
No 376
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.77 E-value=0.012 Score=56.62 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC----CCceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~----~~~v~iie~~ 35 (418)
.+||+|+|||+.|+++|..|... ..++.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999999864 3589999987
No 377
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.75 E-value=0.0048 Score=62.14 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=31.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+-+|..|...+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4789999999999999999999999999999854
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.73 E-value=0.048 Score=56.62 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
.++|+|||+|..|+.++..+.+.+ .+++|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999888887 5788888854
No 379
>PRK07236 hypothetical protein; Provisional
Probab=96.64 E-value=0.0086 Score=58.98 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...+|+|||||.+|.-+|..|...|.. |+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 457899999999999999999998765 999999864
No 380
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.62 E-value=0.012 Score=58.13 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcc
Confidence 46899999999999999999988765 999999864
No 381
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.61 E-value=0.0038 Score=55.27 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|||+|.+|+-+|..|.+.+.. +|+++.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCC
Confidence 6999999999999999998653 489999874
No 382
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.59 E-value=0.007 Score=59.56 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|...|.. |.++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCC
Confidence 389999999999999999877654 999998764
No 383
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.58 E-value=0.011 Score=60.73 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||||..|+++|..++..|.. |.++.++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCc---EEEEeccc
Confidence 5799999999999999999988765 99999864
No 384
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.58 E-value=0.0023 Score=56.48 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|..|+.+|..|...+.. |+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEeccc
Confidence 589999999999999999976654 88886544
No 385
>PRK06834 hypothetical protein; Provisional
Probab=96.57 E-value=0.0096 Score=60.55 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 5799999999999999999998865 999998764
No 386
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.0071 Score=60.24 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|..|+|+|.+.+..|.. +.+++-+..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~d 38 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLD 38 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe---EEEEEcCCC
Confidence 5799999999999999999888865 788777643
No 387
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.027 Score=53.38 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=69.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++|+|||||-+++..|..|.+.+.+|+++=|++.+ .....
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~~---- 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEEI---- 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCHH----
Confidence 359999999999999999999999999999997522 11122
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+.+... ++ .+.+++.+..+..++ .-.|.+++.+ +....+.+|.|+++.|.
T Consensus 184 ~~~~l~~~~~i--~~~~~~~i~ei~G~~-----------------------v~~v~l~~~~-~~~~~~~~~gvf~~iG~- 236 (305)
T COG0492 184 LVERLKKNVKI--EVLTNTVVKEILGDD-----------------------VEGVVLKNVK-GEEKELPVDGVFIAIGH- 236 (305)
T ss_pred HHHHHHhcCCe--EEEeCCceeEEecCc-----------------------cceEEEEecC-CceEEEEeceEEEecCC-
Confidence 23333333 55 788899999988643 1135555544 55678999999999995
Q ss_pred CCCCCC
Q 014821 162 SDVPNI 167 (418)
Q Consensus 162 ~~~p~~ 167 (418)
.|+.
T Consensus 237 --~p~~ 240 (305)
T COG0492 237 --LPNT 240 (305)
T ss_pred --CCch
Confidence 4554
No 388
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.47 E-value=0.12 Score=54.50 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=29.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999888885 799998864
No 389
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.46 E-value=0.22 Score=50.67 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~~ 36 (418)
++|+|||||..|+.+|..+.+.+. +|++++..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 689999999999999888888775 799998865
No 390
>PRK07588 hypothetical protein; Provisional
Probab=96.45 E-value=0.013 Score=57.82 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=29.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|.+|.-+|..|+..|.. |+++.+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCC
Confidence 799999999999999999988765 999998764
No 391
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.44 E-value=0.028 Score=62.06 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+.|.+ |+++.++.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 6899999999999999999999874 77777653
No 392
>PRK06753 hypothetical protein; Provisional
Probab=96.36 E-value=0.011 Score=57.75 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|.+|.-+|..|...|.. |+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 699999999999999999998765 999999875
No 393
>PLN02697 lycopene epsilon cyclase
Probab=96.35 E-value=0.005 Score=62.83 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|.+|.-+|..|+..|.. |.++.+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~ 141 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL 141 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc
Confidence 35799999999999999999888765 99987643
No 394
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.30 E-value=0.038 Score=55.89 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..+.+.|.. |.++.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~---V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD---VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4799999999999999999887765 99998764
No 395
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.29 E-value=0.012 Score=56.63 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhC----CCc-eEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCCh
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLK----GFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~----~~~-v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (418)
++..|.|||.|+-|..+|+.|.++ |.+ +.+|+.....+ ... .
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~-------------------------------kiL--P 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME-------------------------------KIL--P 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh-------------------------------hhh--H
Confidence 357899999999999999999874 222 34555532111 000 1
Q ss_pred hHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEE
Q 014821 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (418)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIl 156 (418)
.-+.++-.+.+++-|+ .++-|..|.++.... +...+.+.++ .++..|.||+
T Consensus 393 eyls~wt~ekir~~GV--~V~pna~v~sv~~~~----------------------~nl~lkL~dG-----~~l~tD~vVv 443 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGV--DVRPNAKVESVRKCC----------------------KNLVLKLSDG-----SELRTDLVVV 443 (659)
T ss_pred HHHHHHHHHHHHhcCc--eeccchhhhhhhhhc----------------------cceEEEecCC-----CeeeeeeEEE
Confidence 2233444455666688 788888888887755 5567788888 6999999999
Q ss_pred eeccC
Q 014821 157 CVGRF 161 (418)
Q Consensus 157 AtG~~ 161 (418)
|+|..
T Consensus 444 avG~e 448 (659)
T KOG1346|consen 444 AVGEE 448 (659)
T ss_pred EecCC
Confidence 99965
No 396
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.29 E-value=0.0063 Score=61.22 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=34.0
Q ss_pred CcchhhhhccCcEEEeccCceeE--ecC----cEEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEEGSIILKKSQDFSF--CED----GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~v~~~--~~~----~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..-+.+...+.+|+++.+.|..+ .++ .|++++|++ +++|.+|-|||++..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~-i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRT-IEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEE-EEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCE-EEEeEEEECCCccch
Confidence 34455666667899999886544 333 367889988 999999999999866
No 397
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.29 E-value=0.005 Score=60.53 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+||+|||+|.+|+++|..|.++|.+++|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 398
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.24 E-value=0.056 Score=59.07 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhC-CC-ceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~-~~-~v~iie~~~ 36 (418)
++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 6899999999999999998875 75 799999864
No 399
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0093 Score=55.79 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=78.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHHH
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (418)
+-+|||||+.+|.+|-.|.-.|+++++.=|+--. ..|. +++...+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--------------------------------rGFD--qdmae~v~ 245 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--------------------------------RGFD--QDMAELVA 245 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--------------------------------cccc--HHHHHHHH
Confidence 5689999999999999999999999988884211 1111 57788888
Q ss_pred HHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 85 SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 85 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+.+++.|+ .+...+..+.++..+ ++...|..++..++....-.||.|++|.|.-
T Consensus 246 ~~m~~~Gi--kf~~~~vp~~Veq~~---------------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 246 EHMEERGI--KFLRKTVPERVEQID---------------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHhCC--ceeecccceeeeecc---------------------CCcEEEEeecccccccccchhhhhhhhhccc
Confidence 88888898 777767777888766 4557777777766666778999999999965
No 400
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.21 E-value=0.034 Score=55.13 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=36.7
Q ss_pred cchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+++.+++++.+. +..++. ++ |++++|++ +.+|.||.|.|..+.
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQ-LRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 345566666778888875 666643 33 66788888 999999999998765
No 401
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.16 E-value=0.0045 Score=63.73 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHhCC-CceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~-~~v~iie~~~ 36 (418)
|+||||+|.+|+.+|..|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999988 6999999986
No 402
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.14 E-value=0.005 Score=63.29 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+||||+|.+|..+|..|+..+.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5899999999999999999998899999999984
No 403
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.026 Score=53.10 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=74.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.++++|||||+.++..|--++..|-++.+|=|.+.+= ..|. ..+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------------------R~FD--~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------------------RGFD--EMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------------------cchh--HHHHHH
Confidence 5799999999999999999999999999988865331 1111 345555
Q ss_pred HHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCC
Q 014821 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (418)
Q Consensus 83 l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~ 162 (418)
+.+..+.-++ +++.++.++.+.... ++...+....+ ..-..|.|+.|+|.
T Consensus 236 v~~~~~~~gi--nvh~~s~~~~v~K~~---------------------~g~~~~i~~~~-----~i~~vd~llwAiGR-- 285 (478)
T KOG0405|consen 236 VTEHLEGRGI--NVHKNSSVTKVIKTD---------------------DGLELVITSHG-----TIEDVDTLLWAIGR-- 285 (478)
T ss_pred HHHHhhhcce--eecccccceeeeecC---------------------CCceEEEEecc-----ccccccEEEEEecC--
Confidence 6666666687 788889999988876 23344544444 23459999999995
Q ss_pred CCCCCCCC
Q 014821 163 DVPNIPEF 170 (418)
Q Consensus 163 ~~p~~p~~ 170 (418)
.|+..++
T Consensus 286 -~Pntk~L 292 (478)
T KOG0405|consen 286 -KPNTKGL 292 (478)
T ss_pred -CCCcccc
Confidence 4766554
No 404
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.10 E-value=0.022 Score=56.27 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=37.7
Q ss_pred cCcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+...+.+.+.+.+++++.+. +..++. +. +++++|++ +.+|.||.|+|..+.
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSV-LEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCE-EEeCEEEEcCCCChH
Confidence 34455666667788888776 666643 33 66778888 999999999998865
No 405
>PRK06184 hypothetical protein; Provisional
Probab=96.09 E-value=0.026 Score=57.66 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 35799999999999999999998865 999999764
No 406
>PRK09126 hypothetical protein; Provisional
Probab=96.08 E-value=0.029 Score=55.25 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..|...|.. |+++.|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCc
Confidence 4699999999999999999998765 999999874
No 407
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.04 E-value=0.021 Score=56.07 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=36.1
Q ss_pred Ccchhhhhcc-CcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEE-GSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~-~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
...+.+.+.+ .+++++.+. +..+.. ++ +++++|++ +.+|.||.|.|....
T Consensus 108 ~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~-~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 108 GQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQ-LRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCE-EEeeEEEEecCCChH
Confidence 3445555665 489998775 766643 33 66778887 999999999998754
No 408
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.00 E-value=0.014 Score=57.53 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=38.9
Q ss_pred cCcchhhhhc-cCcEEEeccC-ceeEecCc----EEEc-CCceeeeccEEEEccCCCCC
Q 014821 326 VPEKFYDKVE-EGSIILKKSQ-DFSFCEDG----IVVD-GQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 326 ~~~~~~~~~~-~~~v~~~~~~-v~~~~~~~----v~~~-~g~~~~~~D~Vi~atG~~~~ 377 (418)
+...+.+.+. .++|+++.+. +..++.+. ++++ ||++ +++|+||-|=|..+.
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~-~~a~llVgADG~~S~ 163 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET-LDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE-EecCEEEECCCCchH
Confidence 3445666765 4669999987 77776443 7778 9997 999999999998755
No 409
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.99 E-value=0.0084 Score=59.97 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhh-hcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTT-ANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~-~~~~~~~V~~~~r~~~ 240 (418)
..+++|+|||+|++|+.+|..|+. .+. +|+++.+.+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCC
Confidence 357899999999999999998765 444 4999999874
No 410
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.97 E-value=0.035 Score=54.65 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCC
Confidence 4799999999999999999988765 99999765
No 411
>PLN02785 Protein HOTHEAD
Probab=95.96 E-value=0.008 Score=62.36 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
.+|++|||||.+|+.+|..|++ +.+|+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5899999999999999999999 689999999863
No 412
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.96 E-value=0.029 Score=50.75 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=27.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+.+|||||..|+-.|..|+..... ..|-+++-++
T Consensus 1 kfivvgggiagvscaeqla~~~ps-a~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPS-AEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCC-CcEEEEeccH
Confidence 368999999999999999886554 4577777665
No 413
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.94 E-value=0.031 Score=55.06 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=37.2
Q ss_pred CcchhhhhccCcEEEeccC-ceeEec--Cc--EEEcCCceeeeccEEEEccCCCCC
Q 014821 327 PEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~-v~~~~~--~~--v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
.+.+.+.+++.+++++.+. +..+.. ++ +++++|++ +.+|.||.|+|..+.
T Consensus 116 ~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 116 VDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRR-LEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 3455566777788888876 666643 22 56678888 999999999999875
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.065 Score=50.51 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+-+||+|||||-+|+.+|+-|+-.-..|+++|=.+.. ..-.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~ 393 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADA 393 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHH
Confidence 3589999999999999999999655578888864311 1122
Q ss_pred HHHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeecc
Q 014821 82 YIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (418)
Q Consensus 82 ~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~ 160 (418)
-|++....+ ++ .+..|..-+.|..+. ++---+.+.+..++....+.-+-|.+-.|
T Consensus 394 VLq~kl~sl~Nv--~ii~na~Ttei~Gdg---------------------~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG- 449 (520)
T COG3634 394 VLQDKLRSLPNV--TIITNAQTTEVKGDG---------------------DKVTGLEYRDRVSGEEHHLELEGVFVQIG- 449 (520)
T ss_pred HHHHHHhcCCCc--EEEecceeeEEecCC---------------------ceecceEEEeccCCceeEEEeeeeEEEEe-
Confidence 344444443 55 678888878887664 12223566666667778889999999999
Q ss_pred CCCCCCCCCCC
Q 014821 161 FSDVPNIPEFP 171 (418)
Q Consensus 161 ~~~~p~~p~~~ 171 (418)
-.|+..-++
T Consensus 450 --L~PNT~WLk 458 (520)
T COG3634 450 --LLPNTEWLK 458 (520)
T ss_pred --cccChhHhh
Confidence 457765554
No 415
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.89 E-value=0.041 Score=54.15 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|..|.-+|..|...|.. |+++.+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 34799999999999999999888754 999998764
No 416
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.87 E-value=0.023 Score=55.71 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|+..|.. |+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCc
Confidence 389999999999999999988765 999999874
No 417
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.85 E-value=0.044 Score=56.42 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+++|..++..+.. |.++.++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 589999999999999999988765 99999864
No 418
>PRK08244 hypothetical protein; Provisional
Probab=95.82 E-value=0.031 Score=56.94 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK---TCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 4699999999999999999998865 999999864
No 419
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.79 E-value=0.022 Score=53.40 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=29.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|+-+|..|.+.|.. |+++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 589999999999999999887765 999998763
No 420
>PRK13984 putative oxidoreductase; Provisional
Probab=95.79 E-value=0.097 Score=54.82 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=24.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCC------ceEEEe
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGF------HPIVFE 33 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~------~v~iie 33 (418)
++|+|||||..|+-+|..|.+.+. +++++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999988643 556653
No 421
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.77 E-value=0.019 Score=56.78 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=27.1
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 207 ~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|||+|.+|+-+|..+++.+.. |+++.+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~---V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS---VLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc---EEEEecCcc
Confidence 5999999999999999987755 999998764
No 422
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.76 E-value=0.009 Score=58.00 Aligned_cols=41 Identities=37% Similarity=0.541 Sum_probs=37.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCcccc
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~ 43 (418)
.+|++|||+|.-||.+|.+|++.+.+|+++|++...||.-.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaav 54 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAV 54 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCccee
Confidence 58999999999999999999999999999999977777433
No 423
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.76 E-value=0.07 Score=52.98 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=65.2
Q ss_pred EEEcCCHHHHHHH-HHHH----hCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHH
Q 014821 7 AIVGAGVSGLLAC-KYLL----LKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (418)
Q Consensus 7 vIIG~G~aGl~~a-~~L~----~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (418)
+|++.|..|+..+ ..+. +.|.+|++++..+ ... +..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p----------------------------------psl-pG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP----------------------------------PSV-PGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC----------------------------------CCC-chHHHHH
Confidence 5678888898887 4443 3588999998753 111 2236777
Q ss_pred HHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 82 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
.+.+..++.+. .+..+++|.+++..+ +...+.... ++....+.+|.||+|+|.+
T Consensus 264 aL~~~l~~~Gv--~I~~g~~V~~v~~~~----------------------~~V~~v~~~--~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGG--RIMPGDEVLGAEFEG----------------------GRVTAVWTR--NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEeC----------------------CEEEEEEee--CCceEEEECCEEEEeCCCc
Confidence 78888888888 899999999998765 222222221 2334679999999999976
No 424
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.037 Score=55.51 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...+|+|||+|.+|+-+|..|...+.. .+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccC
Confidence 456899999999999999999998865 288888874
No 425
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.64 E-value=0.012 Score=56.56 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.=+|..|++.|.. |+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 699999999999999999999865 999999875
No 426
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.62 E-value=0.021 Score=56.26 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||+|..|.-+|..|...|.. |+++.+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 35799999999999999999887754 99999875
No 427
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.62 E-value=0.056 Score=53.73 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=29.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|..|+-+|..|...+.. +|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~--~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHL--NVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--CEEEEecCCc
Confidence 799999999999999999887641 3999999764
No 428
>PRK11445 putative oxidoreductase; Provisional
Probab=95.61 E-value=0.12 Score=50.26 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=28.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|.-+|..|+.. .. |+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCc
Confidence 699999999999999998776 54 999999874
No 429
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.60 E-value=0.025 Score=50.35 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||+|.+|.--+..|...|.. |+++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 4578999999999999999999998876 9998754
No 430
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.58 E-value=0.05 Score=53.55 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh---cCCCCCeEEEEec
Q 014821 204 KRVTVVGLQKSALDIAMECTTA---NGLENPCTVLYRT 238 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~---~~~~~~V~~~~r~ 238 (418)
.+|+|||+|.+|.-+|..|... |.. |+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~---v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP---VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE---EEEEeCC
Confidence 5799999999999999999887 654 9999995
No 431
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.56 E-value=0.027 Score=60.70 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+++|+|||+|..|+.+|..|+..|.. |+++.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEcccc
Confidence 4689999999999999999999998876 99999754
No 432
>PRK07045 putative monooxygenase; Reviewed
Probab=95.55 E-value=0.036 Score=54.53 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=30.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS---VTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCc
Confidence 4799999999999999999998765 999999875
No 433
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.018 Score=58.48 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=30.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+++|+|||+|.+|+++|..|...|.. |+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 3467999999999999999999888765 99887654
No 434
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.47 E-value=0.068 Score=53.44 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|.-+|..|+..|.. |.++.|..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCC
Confidence 5799999999999999999988765 99999875
No 435
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.13 Score=50.68 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
...|+|||||..|+|+|.+.+.-|.. .++++.+-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 34799999999999999999888875 77777653
No 436
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.39 E-value=0.064 Score=53.95 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....|+|||+|..|.-+|..|+..|.. |.++.+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 346899999999999999999988865 999998753
No 437
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.36 E-value=0.071 Score=52.37 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |+++.+...
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR---VALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 4799999999999999999988765 999998764
No 438
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.32 E-value=0.021 Score=53.14 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=30.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+..+|+|||||..|+-+|..+.+.-+. .+|-++....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~-g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGS-GSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCC-CceEEecchh
Confidence 4466899999999999999999886554 5688887654
No 439
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.32 E-value=0.068 Score=48.77 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=29.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|..|+-.|..|...|.. |+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGRE---VTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcE---EEEEEcCC
Confidence 699999999999999999999876 99999875
No 440
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.27 E-value=0.1 Score=51.69 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=35.3
Q ss_pred cchhhhhcc-CcEEEeccC-ceeEec--C--cEEEcCCceeeeccEEEEccCCCCC
Q 014821 328 EKFYDKVEE-GSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 328 ~~~~~~~~~-~~v~~~~~~-v~~~~~--~--~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
..+++.+.+ .+++++.+. +..+.. + .|++++|++ +.+|+||-|.|..+.
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~-~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQA-LTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCE-EEeCEEEEeCCCCCh
Confidence 344555544 568988876 666642 2 367788988 999999999998754
No 441
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.22 E-value=0.027 Score=55.98 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|..|.-+|..|...|.. |+++.+++.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 45799999999999999999988765 999999874
No 442
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.12 Score=45.76 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=70.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHH
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (418)
.+-.+|||||-+.+.=|.+|.+++.+|.|+-|++.+ .....
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------RAs~~ 197 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------RASKI 197 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------hHHHH
Confidence 467899999999999999999999999999997622 11122
Q ss_pred HHHHHHhc-CcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccC
Q 014821 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (418)
Q Consensus 83 l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~ 161 (418)
+++.+.+. ++ .+.+|+.++++..+. +..-.+.+++-++|....+..+-|..|.|..
T Consensus 198 Mq~ra~~npnI--~v~~nt~~~ea~gd~---------------------~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~ 254 (322)
T KOG0404|consen 198 MQQRAEKNPNI--EVLYNTVAVEALGDG---------------------KLLNGLRIKNVKTGEETDLPVSGLFFAIGHS 254 (322)
T ss_pred HHHHHhcCCCe--EEEechhhhhhccCc---------------------ccccceEEEecccCcccccccceeEEEecCC
Confidence 33333333 45 678888777765543 1223466777777888899999999999954
No 443
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.17 E-value=0.02 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=27.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|+|||.|+.|+.+|..|++.|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999975
No 444
>PRK08013 oxidoreductase; Provisional
Probab=95.16 E-value=0.11 Score=51.42 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|..|.-+|..|+..|.. |+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCC
Confidence 5799999999999999999888765 999999874
No 445
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.16 E-value=0.046 Score=56.37 Aligned_cols=35 Identities=23% Similarity=0.109 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|.-+|..|...|.. |+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 46799999999999999999988765 999999864
No 446
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.14 E-value=0.066 Score=54.91 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=29.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
.++|+|||+|.+|+-+|..|++...++.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 5799999999999999999999888888877754
No 447
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.14 E-value=0.024 Score=48.27 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|+|||||..|.++|..|+.+|.+|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999964
No 448
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.10 E-value=0.12 Score=51.11 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
++|+|||||..|+-+|..|...|.. |+++.+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 7899999999999999999888765 999998764
No 449
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.09 E-value=0.053 Score=56.08 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=68.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccccCCcceecCCccccccCCCCCCCCCCCCCCChhHHHHHH
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (418)
..-+|||||.-|+.+|..|...|.++.|+.-.+..-. ..-. ..-...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe-----------------------------rQLD---~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME-----------------------------RQLD---RTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH-----------------------------Hhhh---hHHHHHH
Confidence 3468999999999999999999999999887542110 0001 1223456
Q ss_pred HHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCceeEEEeCEEEEeeccCCC
Q 014821 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (418)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~d~vIlAtG~~~~ 163 (418)
+....+.|+ ++.++.....+.... ..-.+...++ ..+.+|.||.|+| .
T Consensus 194 ~~~le~~Gi--~~~l~~~t~ei~g~~----------------------~~~~vr~~DG-----~~i~ad~VV~a~G---I 241 (793)
T COG1251 194 RRKLEDLGI--KVLLEKNTEEIVGED----------------------KVEGVRFADG-----TEIPADLVVMAVG---I 241 (793)
T ss_pred HHHHHhhcc--eeecccchhhhhcCc----------------------ceeeEeecCC-----CcccceeEEEecc---c
Confidence 777777788 677766555554432 2234566666 5899999999999 4
Q ss_pred CCCC
Q 014821 164 VPNI 167 (418)
Q Consensus 164 ~p~~ 167 (418)
+|+.
T Consensus 242 rPn~ 245 (793)
T COG1251 242 RPND 245 (793)
T ss_pred cccc
Confidence 5664
No 450
>PRK07190 hypothetical protein; Provisional
Probab=95.08 E-value=0.066 Score=54.44 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|.-+|..|...|.. |.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCc
Confidence 5799999999999999999887765 999998764
No 451
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.05 E-value=0.19 Score=50.33 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEEEEcCCCCHHHHHHHHhhhc-CCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTAN-GLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~-~~~~~V~~~~r~~~ 240 (418)
.|+|||+|.+|+-+|..+++.| .. |.++.+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 3899999999999999999887 54 999998763
No 452
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.01 E-value=0.062 Score=52.35 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=33.5
Q ss_pred hhhhhcc-CcEEEeccC-ceeEecCcEEEcCCceeeeccEEEEccCCCCC
Q 014821 330 FYDKVEE-GSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (418)
Q Consensus 330 ~~~~~~~-~~v~~~~~~-v~~~~~~~v~~~~g~~~~~~D~Vi~atG~~~~ 377 (418)
+.+.+.+ .+++++.+. |..++.+.|.+++|+ +.+|.||+|||.-..
T Consensus 151 l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~--i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 151 LAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD--VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc--EEeCEEEECCCCChh
Confidence 3455444 378888875 777776677777775 679999999997543
No 453
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.00 E-value=0.076 Score=52.30 Aligned_cols=31 Identities=26% Similarity=0.147 Sum_probs=28.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.|+|||+|.+|.-+|..|+..|.. |.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 599999999999999999988765 9999987
No 454
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.00 E-value=0.035 Score=55.04 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCCCccccc
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~gg~~~~ 44 (418)
+.+||+|+|.|..-..+|..|++.|++|+-+|+++.-||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 3689999999999999999999999999999999999998876
No 455
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.90 E-value=0.07 Score=52.80 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=29.0
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|+.|.-+|..|+..|.. |.++.+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 699999999999999999988865 99999875
No 456
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.038 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|..|.++|..|+++|.+|+++|++.
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 666789999999999999999999999999999864
No 457
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.89 E-value=0.03 Score=55.61 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~ 37 (418)
|.+++|+|||.|..|+.+|..|+++|++|+.+|++..
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 7888999999999999999999999999999998764
No 458
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.85 E-value=0.028 Score=44.06 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||..|..-+..|.+.|.+++|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5689999999999999999999999999999996
No 459
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.043 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|.-|..+|..|+.+|++|+++|++.
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 556889999999999999999999999999999864
No 460
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.76 E-value=0.15 Score=50.23 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh--cCCCCCeEEEEecC
Q 014821 204 KRVTVVGLQKSALDIAMECTTA--NGLENPCTVLYRTE 239 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~--~~~~~~V~~~~r~~ 239 (418)
..|+|||+|.+|+-+|..|+++ +. +|+++.+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~---~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA---RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC---eEEEEeCCC
Confidence 3699999999999999999987 54 499999864
No 461
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.70 E-value=0.31 Score=49.84 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...|+|||+|.+|+-+|..+++.|.. |.++.+.+.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~ 95 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV 95 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 45799999999999999999888765 999998763
No 462
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.69 E-value=0.13 Score=50.13 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCCC---ChhHHHHHHHHHHHhcCcccceEeeeEEEEEEEcCCCCcccccccccCCCCCCCCCCCceEEEEecCCCCcee
Q 014821 71 TDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (418)
Q Consensus 71 ~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (418)
..|| ....+.+-|...+++.++ .++++++|.+|+ . +.|.+.+..+. .
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~--~----------------------~~~~v~~~~~~----~ 126 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ--G----------------------GTLRFETPDGQ----S 126 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe--C----------------------CcEEEEECCCc----e
Confidence 4455 577899999999999999 899999999992 2 33777764331 3
Q ss_pred EEEeCEEEEeeccCCCCCCC
Q 014821 148 VHQVDFVILCVGRFSDVPNI 167 (418)
Q Consensus 148 ~i~~d~vIlAtG~~~~~p~~ 167 (418)
.+.||+||+|||.. +.|..
T Consensus 127 ~~~a~~vIlAtGG~-s~p~~ 145 (376)
T TIGR03862 127 TIEADAVVLALGGA-SWSQL 145 (376)
T ss_pred EEecCEEEEcCCCc-ccccc
Confidence 69999999999987 34443
No 463
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.68 E-value=0.082 Score=47.47 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEec
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~ 238 (418)
.++++|+|||||..|..=+..|...+.. |+++++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~---VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY---VYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 4578999999999999988999898876 9998854
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.049 Score=51.14 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|...+|+|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 666789999999999999999999999999999864
No 465
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.61 E-value=0.055 Score=45.98 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEee
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA 34 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~ 34 (418)
+.++|+|||||..|..-+..|.+.|.+|+|+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457899999999999999999999999999965
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.60 E-value=0.044 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++++|||+|..|.++|..|.+.|.+++++|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999975
No 467
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.59 E-value=0.047 Score=47.57 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=28.3
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
+|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999964
No 468
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.56 E-value=0.051 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|..++|+|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 666789999999999999999999999999999965
No 469
>PRK06126 hypothetical protein; Provisional
Probab=94.51 E-value=0.18 Score=52.11 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..+|+|||+|.+|+-+|..|...|.. |+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 46799999999999999999998865 999998763
No 470
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.48 E-value=0.039 Score=56.25 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhC-CCceEEEeeCCCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDI 38 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~-~~~v~iie~~~~~ 38 (418)
.+|.+|||||.||..+|..|.+. ..+|.++|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 58999999999999999999995 5799999998765
No 471
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.45 E-value=0.058 Score=53.77 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..++|+|||+|.+|+-+|..|...|.. ++++-|++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecC
Confidence 368999999999999999999999876 99999975
No 472
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.42 E-value=0.061 Score=47.90 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||..|...+..|.+.|.+|+|+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999985
No 473
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.41 E-value=0.053 Score=54.55 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=33.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|+.++|+|||+|..|+++|..|++.|++|+++|+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346899999999999999999999999999999964
No 474
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.40 E-value=0.17 Score=52.35 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 202 ~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
....|+|||+|.+|+-+|..|...|.. |+++.+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 456899999999999999999988765 999998863
No 475
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=94.40 E-value=0.052 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.|+|||||.+|+-+|..+++.|.. |.++.+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCcc
Confidence 489999999999999999998865 999998763
No 476
>PRK07538 hypothetical protein; Provisional
Probab=94.38 E-value=0.2 Score=49.79 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
+|+|||+|..|.-+|..|...|.. |+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 699999999999999999988765 999999864
No 477
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.33 E-value=0.067 Score=51.09 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 1 m~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
|++++|+|||+|..|...|..|++.|.+|+++.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 456789999999999999999999999999999853
No 478
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.30 E-value=0.047 Score=53.51 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=28.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
+|+|||+|.+|.-+|..|...|.. |+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 699999999999999999888765 99999864
No 479
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.23 E-value=0.19 Score=50.31 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=36.2
Q ss_pred cchhhhhcc-C--cEEEeccC-ceeEe---------cC--cEEEcCCceeeeccEEEEccCCCCCc
Q 014821 328 EKFYDKVEE-G--SIILKKSQ-DFSFC---------ED--GIVVDGQTTPLKTDLVILATGFKGDV 378 (418)
Q Consensus 328 ~~~~~~~~~-~--~v~~~~~~-v~~~~---------~~--~v~~~~g~~~~~~D~Vi~atG~~~~~ 378 (418)
..+.+.+++ + +++++.+. +..++ ++ .|++.+|++ +.+|+||-|-|..+..
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~-i~a~llVgADG~~S~v 185 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQV-LYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCE-EEeeEEEEecCCCChh
Confidence 344555554 3 59998886 66663 12 367788988 9999999999998663
No 480
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.20 E-value=0.14 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=30.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEe
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r 237 (418)
.++++|+|||+|..|...+..|...+.. |+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC
Confidence 4689999999999999999999998865 999875
No 481
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.17 E-value=0.074 Score=57.25 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=33.6
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 200 ~~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
...+++|+|||+|++|.-+|..|...|.. |+++.|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCC
Confidence 34589999999999999999999888876 999999874
No 482
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.068 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..++|+|||+|..|...|..++..|++|+++|+.+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34689999999999999999999999999999964
No 483
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.07 E-value=0.23 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.....|+|||+|.+|+-+|..|+..|.. |.++.+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence 3456799999999999999999887765 999998753
No 484
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.00 E-value=0.086 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
+.++|+|||||-.|...+..|.+.|.+++|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999999999999999999874
No 485
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.13 Score=49.17 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
..+|+|||+|+.|+=+|..|+.+-.. .+|+++.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~-~~Vdi~Ek~P 55 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPN-AHVDIFEKLP 55 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCC-CeeEeeecCC
Confidence 34999999999999999999985221 4599988766
No 486
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=93.97 E-value=0.23 Score=49.30 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 206 v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
|+|||+|.+|+-+|..+++.|.. |.++.+.+.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~---V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAK---VLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCe---EEEEEeecc
Confidence 89999999999999999998875 999998764
No 487
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.93 E-value=0.12 Score=51.08 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 5799999999999999999998876 999999874
No 488
>PRK06996 hypothetical protein; Provisional
Probab=93.91 E-value=0.14 Score=50.55 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcC-CCCCeEEEEecC
Q 014821 203 GKRVTVVGLQKSALDIAMECTTANG-LENPCTVLYRTE 239 (418)
Q Consensus 203 ~~~v~VvG~G~sa~e~a~~l~~~~~-~~~~V~~~~r~~ 239 (418)
...|+|||+|..|.-+|..|+..|. ...+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 4679999999999999999988763 113599999875
No 489
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.80 E-value=0.38 Score=50.54 Aligned_cols=36 Identities=22% Similarity=0.103 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 201 ~~~~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.+..+|+|||||..|.-+|..|...|.. |+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 4567899999999999999999998865 99999875
No 490
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.081 Score=49.77 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
..+|.|||+|.-|...|..|+..|++|+++|+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3589999999999999999999999999999975
No 491
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.68 E-value=0.14 Score=42.36 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHhCCCc-eEEEeeCC
Q 014821 2 EKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (418)
Q Consensus 2 ~~~~vvIIG~G~aGl~~a~~L~~~~~~-v~iie~~~ 36 (418)
+.++++|||+|-+|-+++..|...|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357899999999999999999999986 99999953
No 492
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.64 E-value=0.47 Score=48.31 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecC
Q 014821 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (418)
Q Consensus 205 ~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~ 239 (418)
.|+|||+|.+|+-+|..+.+.+ . |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G-~---V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG-R---VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC-C---EEEEEccC
Confidence 6999999999999999998765 2 89998875
No 493
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.49 E-value=0.098 Score=49.81 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||+|.-|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999964
No 494
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.45 E-value=0.22 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|++|.-+|..|++.|.. |.++.+...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCC
Confidence 4799999999999999999998865 999998764
No 495
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.45 E-value=0.12 Score=43.42 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=28.8
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCceEEEeeC
Q 014821 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (418)
Q Consensus 6 vvIIG~G~aGl~~a~~L~~~~~~v~iie~~ 35 (418)
|+|+|+|..|...|..|.+.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 799999999999999999999999999996
No 496
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.43 E-value=0.17 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
.+|+|||+|..|.-+|..|...|.. |+++.+++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 5799999999999999999988765 999999874
No 497
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.40 E-value=0.45 Score=49.10 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014821 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (418)
Q Consensus 204 ~~v~VvG~G~sa~e~a~~l~~~~~~~~~V~~~~r~~~ 240 (418)
..|+|||+|.+|+-+|..+.+.|.. |.++.+...
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 5799999999999999999887754 999988663
No 498
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.38 E-value=0.097 Score=43.17 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHhCCC-ceEEEeeC
Q 014821 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEAR 35 (418)
Q Consensus 3 ~~~vvIIG~G~aGl~~a~~L~~~~~-~v~iie~~ 35 (418)
..+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999984
No 499
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.35 E-value=0.093 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHHHhCCCceEEEeeCCCC
Q 014821 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (418)
Q Consensus 5 ~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~~~ 38 (418)
+|.|||.|.+|+++|+.|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987643
No 500
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.34 E-value=0.099 Score=50.40 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=30.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHhCCCceEEEeeCC
Q 014821 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (418)
Q Consensus 4 ~~vvIIG~G~aGl~~a~~L~~~~~~v~iie~~~ 36 (418)
++|.|||.|+.||..+.+|++.|.+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
Done!