BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014822
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 263 PVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKARA 322
P NSS D N ++++VAV+ GLITP++ +A + T++ L KAR
Sbjct: 84 PEANSSWMD-TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKARE 142
Query: 323 KLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVV-ATKDGRIGMKN 381
LQPHE+ GTFT+SNLGMFG+ F AI+ P I+A+GASE +V A + + +
Sbjct: 143 GKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVAS 202
Query: 382 QMQVNVTADHRVIYGADLASFLQTLAKIIEDP 413
M V ++ DHRV+ GA A +L K +E P
Sbjct: 203 MMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKP 234
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 107/438 (24%), Positives = 185/438 (42%), Gaps = 42/438 (9%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+P + + EG+IV W GD++ + + + V++DKA +++ + G + +I+V EG V
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 61 ASVG-SAIALLAESEDEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHPQPEKVKLAE 119
A+VG + I L A + + + EKV
Sbjct: 67 ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVS-------------KEEKVDAVA 113
Query: 120 PAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD------- 172
P A + P +R++A P +K A E V++ V G+G GR++ +D
Sbjct: 114 PNAPAAEAEAGP----NRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 169
Query: 173 ----XXXXXXXXXXXXXXXXXXXXGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYT 227
G + + ++ A+++ MV S P +
Sbjct: 170 GAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE 229
Query: 228 ITTDALDALYKKIKS----KGV--TMXXXXXXXXXXXXVQHPVVNSSCRD-GNSFIYNSS 280
L A KK K+ KG+ T ++PV+N+S D I
Sbjct: 230 ADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHY 289
Query: 281 INIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNL 340
NI +A D GL+ PV++ AD+ I+ L+++ EL +KAR L P E + T++N+
Sbjct: 290 YNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNI 349
Query: 341 GMFGVDRFDAILPPGTGAIMAVG--ASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGAD 398
G G F ++ AI+ +G A +P V +DG I + ++++ DHR+I GA
Sbjct: 350 GSAGGQWFTPVINHPEVAILGIGRIAEKPIV---RDGEIVAAPMLALSLSFDHRMIDGAT 406
Query: 399 LASFLQTLAKIIEDPRDL 416
L + +++ DP L
Sbjct: 407 AQKALNHIKRLLSDPELL 424
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 261 QHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKA 320
++P VN+S DG+ +Y++ ++++AV+ GL+TPVL+D D + + +K KEL K
Sbjct: 76 RYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKG 134
Query: 321 RAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMK 380
R L + G FT++N G+FG I+ P AI+ + A + +A +G++ +
Sbjct: 135 RDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAV-NGQVEIL 193
Query: 381 NQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDL 416
M + ++ DHR+I G + FL T+ +++EDP L
Sbjct: 194 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRL 229
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 261 QHPVVNSSCRD-GNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDK 319
++PV+N+S D I NI +A D GL+ PV++ AD+ I+ L+++ EL +K
Sbjct: 85 EYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEK 144
Query: 320 ARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVG--ASEPTVVATKDGRI 377
AR L P E + T++N+G G F ++ AI+ +G A +P V +DG I
Sbjct: 145 ARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV---RDGEI 201
Query: 378 GMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDL 416
+ ++++ DHR+I GA L + +++ DP L
Sbjct: 202 VAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELL 240
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 264 VVNSSCRD---GNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKA 320
++NS+ D G + +++ A + GL+ PV+ DA + L+ + EL+ A
Sbjct: 84 ILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGA 143
Query: 321 RAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMK 380
R L P E TFT+SN G GVD ++ AI+ +GA +P V G + +
Sbjct: 144 REGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVV-GGEVVAR 202
Query: 381 NQMQVNVTADHRVIYGADLASFLQTLAKIIEDP 413
M + DHRV+ GA +A F+ L +IE P
Sbjct: 203 PTMTLTCVFDHRVVDGAQVAQFMCELRDLIESP 235
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 7/220 (3%)
Query: 201 PFTTMQGAVSRNMVESLAVPTFRVGYTITTDALDALYKKIK----SKGVTMXXXXXXXXX 256
P A+ + M +L +P F + L L +++K ++G+ +
Sbjct: 35 PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKA 94
Query: 257 XXX--VQHPVVNSSC-RDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKW 313
+Q P++N+S + + Y +S NI +A+ + GLI P +++ I+ ++ +
Sbjct: 95 ASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATEL 154
Query: 314 KELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATK 373
L A L ++ GTFTLSN+G G ++ P AI A+G + +
Sbjct: 155 NRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNE 214
Query: 374 DGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDP 413
G + M V+ +ADHR+I GA ++ F +E+P
Sbjct: 215 KGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENP 254
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 200 VPFTTMQGAVSRNMVES--------LAVPTFRVGYTITTDALDALYKKIKSKGVTMXXXX 251
+P ++ A++++M S + V G +A+ +KK + +T
Sbjct: 21 IPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFF 80
Query: 252 XXXXXXXXVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSR 311
+ P +NS+ G+ I +++INI++A+A L PV+++AD+ I ++R
Sbjct: 81 IKAVAQALKEFPQLNSTWA-GDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR 139
Query: 312 KWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGA--SEPTV 369
+ EL KAR L + GTFT+++ G FG + I+ AI+ V + P +
Sbjct: 140 EISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVI 199
Query: 370 VATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIE 411
+ D I +++ + + ++ DHR++ G FLQ + +E
Sbjct: 200 I---DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 261 QHPVVNSSCRDGNS-FIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDK 319
Q+P +N+ + +I NI +AV GL V++DAD+ + +S + + +
Sbjct: 73 QYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASR 132
Query: 320 ARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGM 379
AR LQ E TFT++N+G G I+ AI+ V + ++GR
Sbjct: 133 ARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHR-----ILEREGR--- 184
Query: 380 KNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418
M ++++ DHR+I GA F+ L K+IEDP + +
Sbjct: 185 -KYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY 222
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
MP+LS TM EG IV W++ EG+ + G+++ +E+DKA + ++ DG LAKI+V+EG
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 61 A-SVGSAIALLAE 72
+GS I L+ E
Sbjct: 68 NIRLGSLIGLIVE 80
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+PALS TMT G + W + G+KL +G+ + +E+DKA + E +GYLAKI+V EG
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91
Query: 61 -ASVGSAIALLAESEDEI 77
+G+ + ++ E E +I
Sbjct: 92 DVPLGTPLCIIVEKEADI 109
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
MP+LS TM EG IV W++ EG+ + G+++ +E+DKA + ++ DG LAKI+V+EG
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 61 A-SVGSAIALLAE 72
+GS I L+ E
Sbjct: 72 NIRLGSLIGLIVE 84
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+PALS TMT G + W + G+KL +G+ + +E+DKA + E +GYLAKI+V EG
Sbjct: 14 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 73
Query: 61 -ASVGSAIALLAESEDEI 77
+G+ + ++ E E +I
Sbjct: 74 DVPLGTPLCIIVEKEADI 91
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+PALS TMT G + W + G+KL +G+ + +E+D A + E +GYLAKI+V EG
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 -ASVGSAIALLAESEDEI 77
+G+ + ++ E E +I
Sbjct: 70 DVPLGTPLCIIVEKEADI 87
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEG 58
+P+LS TM G I W + EGDK+ +G+ + VE+DKA + E+ + Y+AKI+V EG
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 263 PVVNSSCR-DGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKAR 321
P NSS G + I ++I AV GL+ PV+++ D+ + L+ + EL +KAR
Sbjct: 88 PDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKAR 147
Query: 322 AKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKN 381
+K L FT+S+LG G F I+ AI+ G S+ ++ DG+
Sbjct: 148 SKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAIL--GVSKASMQPVWDGKAFQPR 205
Query: 382 QM-QVNVTADHRVIYGADLASFLQTLAKIIEDPR 414
M ++++ DHRVI GA A F + L ++ D R
Sbjct: 206 LMLPLSLSYDHRVINGAAAARFTKRLGDLLADIR 239
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 263 PVVNSSCR-DGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKAR 321
P NSS G + I ++I AV GL+ PV+++ D+ + L+ + EL +KAR
Sbjct: 88 PDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKAR 147
Query: 322 AKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKN 381
+K L FT+S+LG G F I+ AI+ G S+ ++ DG+
Sbjct: 148 SKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAIL--GVSKASMQPVWDGKAFQPR 205
Query: 382 QM-QVNVTADHRVIYGADLASFLQTLAKIIEDPR 414
M ++++ DHRVI GA A F + L ++ D R
Sbjct: 206 LMLPLSLSYDHRVIDGAAAARFTKRLGDLLADIR 239
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 263 PVVNSSCR-DGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKAR 321
P NSS G + I ++I AV GL+ PV+++ D+ + L+ + EL +KAR
Sbjct: 88 PDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKAR 147
Query: 322 AKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKN 381
+K L FT+++LG G F I+ AI+ G S+ ++ DG+
Sbjct: 148 SKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAIL--GVSKASMQPVWDGKAFQPR 205
Query: 382 QM-QVNVTADHRVIYGADLASFLQTLAKIIEDPR 414
M ++++ DHRVI GA A F + L ++ D R
Sbjct: 206 LMLPLSLSYDHRVINGAAAARFTKRLGDLLADIR 239
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 263 PVVNSSCR-DGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKAR 321
P NSS G + I ++I AV GL+ PV+++ D+ + L+ + EL +KAR
Sbjct: 88 PDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKAR 147
Query: 322 AKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKN 381
+K L FT+S+LG G F I+ AI+ G S+ ++ DG+
Sbjct: 148 SKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAIL--GVSKASMQPVWDGKAFQPR 205
Query: 382 QM-QVNVTADHRVIYGADLASFLQTLAKIIEDPR 414
M ++++ D RVI GA A F + L ++ D R
Sbjct: 206 LMLPLSLSYDCRVINGAAAARFTKRLGDLLADIR 239
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 282 NIAVAVAVDG-----GLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFT 336
N+ +A+ + G L+ ++ + ++++V +AR L +++ T +
Sbjct: 81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTIS 140
Query: 337 LSNLGMFGVDRFDAILPPGTGAIMAVGASE--PTVVATKDGRI---GMKNQMQVNVTADH 391
L+N G G L G GAI+ GA E + RI G+ + + T DH
Sbjct: 141 LTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDH 200
Query: 392 RVIYGADLASFLQTLAKIIED 412
R+I GA+ FL+T+ +++ D
Sbjct: 201 RIIQGAESGDFLRTIHQLLLD 221
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+P + +TEG+IV W EGD + K + +V V +DK + + + G + KI+ EG V
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 61 ASVGSAI 67
VGS +
Sbjct: 66 VPVGSTL 72
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60
+P + + EG+IV W GD++ + + + V++DKA +++ + G + +I+V EG V
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 61 ASVGSAIALL 70
A+VG + L
Sbjct: 66 ATVGQTLITL 75
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 2 PALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVA 61
P ++ +G + +W + G+ + + E +V +E+DK M+V DG +A+I+ +EG
Sbjct: 7 PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTV 66
Query: 62 SVGSAIALLAE 72
G + L E
Sbjct: 67 LSGELLGKLTE 77
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEG 58
+P L ++ + + +W + GD + + E +V +E+DK ++V DG L ++ DEG
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 136 GKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
G++ +A+P ++LA E ++L+ VVGSG GRI+ +D
Sbjct: 5 GRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKED 41
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 136 GKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
G++ +A+P ++LA E ++L+ VVGSG GRI+ +D
Sbjct: 13 GRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKED 49
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 136 GKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
G++ +A+P + LA E ++L+ VVGSG GRI+ +D
Sbjct: 5 GRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKED 41
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 135 GGKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
G + + A P A++LA EL ++L++V G+GP G I +D
Sbjct: 1 GSREVAAMPAARRLAKELGIDLSKVKGTGPGGVITVED 38
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 16 WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVG 64
W EGD + + +S+ V+SDKA + + + YDG + K+ + +A VG
Sbjct: 24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVG 72
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 135 GGKRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
G + + A P A++LA EL ++ ++V G+GP G I +D
Sbjct: 1 GSREVAAMPAARRLAKELGIDASKVKGTGPGGVITVED 38
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 139 IVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
++A P A+KLA EL + + V GSGP GR+ +D
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVED 34
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 208 AVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVT 246
A +RN E L VPT Y + ++ AL KK++ G+T
Sbjct: 349 AATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMT 387
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 141 ASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
A+P ++LA EL V+L R+ G+G GRI +D
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEED 33
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 21 GDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70
GDK+ +S++ VE DKA M+V + G + ++ V+ G GS I +
Sbjct: 21 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 70
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val
Start) From Pyrococcus Horikoshi Ot3 Ligand Free Form
Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val
Start) From Pyrococcus Horikoshi Ot3 Ligand Free Form
Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val
Start) From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase
(Mutations R48a And K111a) And Biotin Carboxyl Carrier
Protein Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase
(Mutations R48a And K111a) And Biotin Carboxyl Carrier
Protein Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAI 67
GK++ + GD++ G+ ++V+E+ K + ++ + DG + +I+V EG G +
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPL 70
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase
From Escherichia Coli
Length = 80
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 21 GDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70
GDK+ +S++ VE DKA M+V + G + ++ V+ G GS I +
Sbjct: 25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 74
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 137 KRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
+R++A P +K A E V++ V G+G GR++ +D
Sbjct: 4 RRVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKED 39
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 137 KRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
+R++A P +K A E V++ V G+G GR++ +D
Sbjct: 4 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 39
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 137 KRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
+R++A P +K A E V++ V G+G GR++ +D
Sbjct: 11 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 46
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 137 KRIVASPYAKKLANELKVELARVVGSGPKGRIVAKD 172
+R++A P +K A E V++ V G+G GR++ +D
Sbjct: 5 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 40
>pdb|2K32|A Chain A, Truncated Acra From Campylobacter Jejuni For
Glycosylation Studies
pdb|2K33|A Chain A, Solution Structure Of An N-Glycosylated Protein Using In
Vitro Glycosylation
Length = 116
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMD 41
G IV+ + GDK+ KG+++ ++E D+A D
Sbjct: 10 GVIVNKLFKAGDKVKKGQTLFIIEQDQASKD 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,988,486
Number of Sequences: 62578
Number of extensions: 355024
Number of successful extensions: 1009
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 53
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)