Query 014822
Match_columns 418
No_of_seqs 264 out of 2164
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05704 dihydrolipoamide succ 100.0 1.7E-86 3.7E-91 667.9 39.6 384 1-418 7-405 (407)
2 TIGR01347 sucB 2-oxoglutarate 100.0 3.6E-86 7.7E-91 664.2 40.6 384 1-418 5-401 (403)
3 PLN02744 dihydrolipoyllysine-r 100.0 2.4E-85 5.3E-90 671.9 41.2 407 1-418 117-539 (539)
4 PLN02528 2-oxoisovalerate dehy 100.0 4.8E-84 1E-88 652.6 40.0 387 1-418 3-413 (416)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 7.9E-84 1.7E-88 676.5 41.3 413 1-415 140-584 (590)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 1.5E-83 3.3E-88 652.3 41.8 411 1-418 4-435 (435)
7 TIGR01348 PDHac_trf_long pyruv 100.0 4.1E-83 9E-88 666.4 40.4 402 1-418 121-546 (546)
8 KOG0557 Dihydrolipoamide acety 100.0 2.9E-82 6.3E-87 619.0 31.4 409 1-418 43-470 (470)
9 PRK11856 branched-chain alpha- 100.0 2.6E-80 5.7E-85 629.5 40.9 395 1-418 7-410 (411)
10 PRK11854 aceF pyruvate dehydro 100.0 2.2E-80 4.8E-85 657.2 41.1 396 1-418 211-633 (633)
11 PRK11855 dihydrolipoamide acet 100.0 8.6E-80 1.9E-84 644.5 40.1 397 1-418 124-547 (547)
12 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.3E-79 5.1E-84 615.7 35.1 385 1-418 7-403 (404)
13 PLN02226 2-oxoglutarate dehydr 100.0 5.9E-76 1.3E-80 591.2 36.3 358 1-418 96-461 (463)
14 PTZ00144 dihydrolipoamide succ 100.0 7.8E-75 1.7E-79 579.8 35.2 360 1-418 49-416 (418)
15 KOG0558 Dihydrolipoamide trans 100.0 1.3E-73 2.9E-78 535.0 23.0 381 2-418 70-471 (474)
16 PRK14843 dihydrolipoamide acet 100.0 6.7E-68 1.5E-72 521.8 28.5 280 138-418 48-347 (347)
17 PRK11857 dihydrolipoamide acet 100.0 9.9E-68 2.1E-72 512.3 28.9 278 139-417 2-304 (306)
18 KOG0559 Dihydrolipoamide succi 100.0 4.4E-67 9.6E-72 493.5 19.6 370 1-418 77-455 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.3E-56 2.9E-61 420.3 23.0 222 196-418 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 1.5E-44 3.2E-49 378.4 27.3 216 197-412 115-350 (1228)
21 PF00302 CAT: Chloramphenicol 100.0 1.7E-32 3.6E-37 252.1 22.4 184 212-407 18-206 (206)
22 PRK13757 chloramphenicol acety 100.0 1.3E-32 2.8E-37 254.2 20.7 181 219-412 30-214 (219)
23 COG4845 Chloramphenicol O-acet 100.0 3.4E-27 7.5E-32 208.4 18.7 189 215-416 24-217 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.7 4.8E-18 1E-22 131.3 6.3 70 1-70 5-74 (74)
25 PRK14875 acetoin dehydrogenase 99.7 4.6E-17 1E-21 162.9 10.3 72 1-72 7-78 (371)
26 PRK06748 hypothetical protein; 99.7 2.3E-16 4.9E-21 123.0 9.3 63 10-72 12-75 (83)
27 PRK05889 putative acetyl-CoA c 99.6 1.1E-14 2.4E-19 111.5 9.2 63 9-71 9-71 (71)
28 cd06663 Biotinyl_lipoyl_domain 99.5 6.8E-14 1.5E-18 107.7 9.9 70 1-70 4-73 (73)
29 PRK11892 pyruvate dehydrogenas 99.5 8.8E-14 1.9E-18 142.7 11.5 76 1-76 7-83 (464)
30 COG0511 AccB Biotin carboxyl c 99.5 5E-14 1.1E-18 122.1 8.3 62 10-71 78-139 (140)
31 PRK08225 acetyl-CoA carboxylas 99.5 1.8E-13 3.8E-18 104.6 8.6 63 9-71 8-70 (70)
32 PF02817 E3_binding: e3 bindin 99.4 2.1E-13 4.5E-18 90.9 3.9 38 138-175 2-39 (39)
33 PRK11854 aceF pyruvate dehydro 99.4 8.9E-13 1.9E-17 140.9 10.1 71 1-73 7-77 (633)
34 PRK06549 acetyl-CoA carboxylas 99.4 1.4E-12 3.1E-17 110.7 8.9 62 9-70 68-129 (130)
35 TIGR02927 SucB_Actino 2-oxoglu 99.4 1.8E-12 4E-17 137.2 9.7 73 1-73 7-79 (590)
36 PRK05641 putative acetyl-CoA c 99.3 3.7E-12 8E-17 111.5 8.7 62 9-70 91-152 (153)
37 PRK07051 hypothetical protein; 99.3 1E-11 2.2E-16 97.4 8.7 63 9-71 10-79 (80)
38 cd06850 biotinyl_domain The bi 99.3 1.8E-11 3.9E-16 92.0 9.0 62 9-70 6-67 (67)
39 PLN02983 biotin carboxyl carri 99.3 1.2E-11 2.6E-16 115.2 8.6 62 10-71 205-273 (274)
40 PRK11855 dihydrolipoamide acet 99.3 1.8E-11 4E-16 129.1 10.1 73 1-74 7-79 (547)
41 TIGR00531 BCCP acetyl-CoA carb 99.2 1.9E-11 4E-16 107.9 8.1 62 10-71 88-156 (156)
42 TIGR01348 PDHac_trf_long pyruv 99.2 3.5E-11 7.5E-16 126.5 9.7 72 1-73 5-76 (546)
43 PRK06302 acetyl-CoA carboxylas 99.2 5.3E-11 1.1E-15 105.0 8.3 61 11-71 88-155 (155)
44 PRK14042 pyruvate carboxylase 99.2 8.4E-11 1.8E-15 123.7 9.3 63 10-72 533-595 (596)
45 cd06849 lipoyl_domain Lipoyl d 99.1 4.2E-10 9E-15 84.9 10.2 70 1-70 5-74 (74)
46 TIGR02712 urea_carbox urea car 99.0 4.7E-10 1E-14 127.4 9.2 63 9-71 1139-1201(1201)
47 TIGR01108 oadA oxaloacetate de 99.0 6E-10 1.3E-14 117.6 7.9 59 9-67 524-582 (582)
48 PRK14040 oxaloacetate decarbox 99.0 1.2E-09 2.6E-14 115.4 9.1 62 10-71 532-593 (593)
49 TIGR01235 pyruv_carbox pyruvat 98.9 1.6E-09 3.4E-14 122.1 8.9 63 9-71 1081-1143(1143)
50 PRK09282 pyruvate carboxylase 98.9 4.4E-09 9.5E-14 111.4 8.8 63 9-71 529-591 (592)
51 COG4770 Acetyl/propionyl-CoA c 98.9 4.4E-09 9.6E-14 106.8 7.5 62 10-71 583-644 (645)
52 PRK12999 pyruvate carboxylase; 98.8 1.5E-08 3.3E-13 114.6 8.8 62 10-71 1084-1145(1146)
53 COG1038 PycA Pyruvate carboxyl 98.6 3.3E-08 7.1E-13 103.7 6.2 62 10-71 1087-1148(1149)
54 KOG0369 Pyruvate carboxylase [ 98.5 2.4E-07 5.1E-12 95.6 6.6 62 10-71 1114-1175(1176)
55 cd06848 GCS_H Glycine cleavage 98.3 1.2E-06 2.5E-11 71.1 6.2 51 10-60 28-79 (96)
56 KOG0238 3-Methylcrotonyl-CoA c 98.1 1.8E-06 4E-11 86.9 4.3 62 10-71 609-670 (670)
57 TIGR03077 not_gcvH glycine cle 98.1 4.3E-06 9.3E-11 69.2 5.6 47 11-57 30-77 (110)
58 PRK00624 glycine cleavage syst 98.0 1.4E-05 3E-10 66.6 6.4 44 11-54 32-76 (114)
59 PRK09783 copper/silver efflux 97.9 3.1E-05 6.8E-10 79.2 8.7 66 9-74 130-244 (409)
60 PRK13380 glycine cleavage syst 97.9 1.6E-05 3.5E-10 69.1 5.6 50 10-59 43-93 (144)
61 KOG0368 Acetyl-CoA carboxylase 97.9 1.7E-05 3.6E-10 88.2 6.8 66 8-74 691-756 (2196)
62 TIGR00998 8a0101 efflux pump m 97.9 3.3E-05 7.1E-10 76.6 7.6 35 40-74 205-239 (334)
63 PRK01202 glycine cleavage syst 97.9 4E-05 8.8E-10 65.3 6.8 64 11-74 37-108 (127)
64 PRK10559 p-hydroxybenzoic acid 97.8 4E-05 8.6E-10 75.5 7.3 65 9-73 54-188 (310)
65 TIGR01730 RND_mfp RND family e 97.8 4E-05 8.6E-10 75.3 6.1 65 9-73 33-168 (322)
66 PRK10476 multidrug resistance 97.8 6.2E-05 1.3E-09 75.3 7.3 35 40-74 209-243 (346)
67 PRK14843 dihydrolipoamide acet 97.6 4E-05 8.7E-10 76.4 3.4 42 138-179 5-46 (347)
68 PRK15136 multidrug efflux syst 97.6 0.00013 2.9E-09 74.2 7.1 35 40-74 216-250 (390)
69 TIGR00527 gcvH glycine cleavag 97.6 8.4E-05 1.8E-09 63.3 4.6 48 11-58 36-84 (127)
70 PRK03598 putative efflux pump 97.6 0.00015 3.2E-09 72.1 6.7 34 40-73 204-237 (331)
71 PRK09578 periplasmic multidrug 97.5 0.00016 3.6E-09 73.3 6.9 65 9-73 70-207 (385)
72 PF13533 Biotin_lipoyl_2: Biot 97.5 0.00022 4.7E-09 50.5 5.2 37 39-75 2-38 (50)
73 PRK15030 multidrug efflux syst 97.5 0.00021 4.5E-09 72.9 7.2 64 9-72 72-208 (397)
74 PRK09859 multidrug efflux syst 97.4 0.0003 6.6E-09 71.4 7.0 65 9-73 68-205 (385)
75 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00019 4.2E-09 50.7 3.5 30 9-38 9-38 (50)
76 PRK11556 multidrug efflux syst 97.3 0.00045 9.8E-09 70.8 6.6 64 9-72 94-230 (415)
77 PF01597 GCV_H: Glycine cleava 97.3 0.00056 1.2E-08 57.9 6.0 44 11-54 31-75 (122)
78 PRK11578 macrolide transporter 97.3 0.00069 1.5E-08 68.4 7.4 65 9-73 68-220 (370)
79 COG0509 GcvH Glycine cleavage 97.2 0.00055 1.2E-08 57.9 4.7 44 11-54 39-83 (131)
80 PF12700 HlyD_2: HlyD family s 97.1 0.00046 9.9E-09 67.9 4.1 64 9-73 28-193 (328)
81 TIGR02971 heterocyst_DevB ABC 97.1 0.0013 2.9E-08 65.1 7.1 33 41-74 206-238 (327)
82 PRK12784 hypothetical protein; 97.1 0.0034 7.5E-08 47.6 7.4 65 9-73 12-77 (84)
83 TIGR03309 matur_yqeB selenium- 97.0 0.0022 4.8E-08 60.5 7.8 59 10-74 172-230 (256)
84 PRK05889 putative acetyl-CoA c 96.6 0.0034 7.4E-08 47.7 4.6 34 41-74 4-37 (71)
85 TIGR00999 8a0102 Membrane Fusi 96.4 0.0073 1.6E-07 57.6 6.3 34 40-73 89-122 (265)
86 PF13375 RnfC_N: RnfC Barrel s 96.3 0.0067 1.5E-07 49.5 4.8 46 10-56 38-83 (101)
87 PRK06748 hypothetical protein; 96.1 0.008 1.7E-07 47.1 4.3 32 41-72 6-37 (83)
88 TIGR01843 type_I_hlyD type I s 96.1 0.016 3.5E-07 59.1 7.4 33 41-73 273-306 (423)
89 COG1566 EmrA Multidrug resista 96.0 0.017 3.6E-07 57.7 7.0 36 39-74 208-243 (352)
90 cd06253 M14_ASTE_ASPA_like_3 A 95.9 0.024 5.3E-07 55.5 7.6 58 11-70 237-297 (298)
91 PF07247 AATase: Alcohol acety 95.9 0.19 4.2E-06 52.3 14.6 40 223-262 251-290 (480)
92 cd06250 M14_PaAOTO_like An unc 95.6 0.034 7.3E-07 56.0 7.3 58 11-70 297-358 (359)
93 PRK08225 acetyl-CoA carboxylas 95.5 0.024 5.2E-07 42.8 4.7 34 41-74 3-36 (70)
94 cd06251 M14_ASTE_ASPA_like_1 A 95.4 0.054 1.2E-06 52.8 7.9 56 13-70 229-286 (287)
95 cd06850 biotinyl_domain The bi 95.4 0.021 4.6E-07 42.0 4.0 32 42-73 2-33 (67)
96 COG0511 AccB Biotin carboxyl c 95.4 0.018 4E-07 49.9 4.2 37 39-75 70-106 (140)
97 cd06252 M14_ASTE_ASPA_like_2 A 95.4 0.056 1.2E-06 53.4 8.1 59 11-71 252-314 (316)
98 TIGR02994 ectoine_eutE ectoine 95.2 0.063 1.4E-06 53.2 7.7 56 13-70 265-324 (325)
99 PF13437 HlyD_3: HlyD family s 95.0 0.031 6.6E-07 45.5 4.0 33 41-73 1-33 (105)
100 PF05896 NQRA: Na(+)-transloca 94.7 0.051 1.1E-06 51.6 5.2 59 10-71 37-95 (257)
101 PRK06549 acetyl-CoA carboxylas 94.6 0.056 1.2E-06 46.2 4.7 36 39-74 61-96 (130)
102 cd06254 M14_ASTE_ASPA_like_4 A 94.4 0.1 2.2E-06 50.9 6.6 55 11-67 231-287 (288)
103 PRK07051 hypothetical protein; 94.1 0.067 1.5E-06 41.6 3.9 26 9-34 54-79 (80)
104 PF00364 Biotin_lipoyl: Biotin 93.9 0.068 1.5E-06 40.9 3.4 35 41-75 2-42 (74)
105 TIGR01936 nqrA NADH:ubiquinone 93.8 0.059 1.3E-06 55.6 3.9 46 9-55 36-81 (447)
106 PF09891 DUF2118: Uncharacteri 93.8 0.094 2E-06 45.7 4.5 45 10-54 88-133 (150)
107 PF00529 HlyD: HlyD family sec 93.7 0.059 1.3E-06 52.3 3.6 37 40-76 2-38 (305)
108 PRK05641 putative acetyl-CoA c 93.7 0.099 2.1E-06 46.0 4.6 36 39-74 84-119 (153)
109 COG3608 Predicted deacylase [G 93.5 0.18 3.9E-06 49.6 6.5 61 9-71 262-325 (331)
110 PRK11556 multidrug efflux syst 93.2 0.21 4.6E-06 51.3 6.8 62 12-74 61-122 (415)
111 TIGR00998 8a0101 efflux pump m 93.1 0.13 2.8E-06 50.8 5.0 37 39-75 42-78 (334)
112 PRK10476 multidrug resistance 93.1 0.17 3.7E-06 50.5 5.8 42 31-74 42-83 (346)
113 TIGR02971 heterocyst_DevB ABC 92.8 0.15 3.3E-06 50.4 4.9 44 31-74 5-51 (327)
114 TIGR01235 pyruv_carbox pyruvat 92.6 0.18 3.9E-06 58.0 5.8 63 11-74 1047-1109(1143)
115 PRK11578 macrolide transporter 92.6 0.27 6E-06 49.5 6.5 61 12-73 35-95 (370)
116 PRK09859 multidrug efflux syst 92.5 0.32 6.9E-06 49.4 7.0 60 14-74 37-96 (385)
117 PRK05352 Na(+)-translocating N 92.5 0.18 3.8E-06 52.2 5.1 45 10-55 38-82 (448)
118 PRK09578 periplasmic multidrug 92.3 0.3 6.5E-06 49.5 6.5 60 14-74 39-98 (385)
119 PF00529 HlyD: HlyD family sec 91.9 0.12 2.7E-06 50.0 3.1 34 8-41 7-40 (305)
120 TIGR01000 bacteriocin_acc bact 91.9 0.32 6.9E-06 50.6 6.1 43 33-75 53-95 (457)
121 TIGR01730 RND_mfp RND family e 91.7 0.32 6.9E-06 47.5 5.6 42 32-74 20-61 (322)
122 PF12700 HlyD_2: HlyD family s 91.5 0.19 4.2E-06 49.2 3.9 43 29-74 13-55 (328)
123 TIGR02946 acyl_WS_DGAT acyltra 91.4 3.7 8E-05 42.2 13.4 166 223-412 231-441 (446)
124 COG1726 NqrA Na+-transporting 91.3 0.23 5.1E-06 48.8 4.1 42 15-57 42-83 (447)
125 TIGR01945 rnfC electron transp 91.3 0.21 4.5E-06 51.6 4.0 43 11-54 40-82 (435)
126 PRK10559 p-hydroxybenzoic acid 91.1 0.32 7E-06 47.9 5.0 37 39-75 47-83 (310)
127 PRK15136 multidrug efflux syst 91.0 0.32 6.9E-06 49.5 5.0 37 39-75 61-97 (390)
128 PRK15030 multidrug efflux syst 90.8 0.51 1.1E-05 48.1 6.3 56 18-74 45-100 (397)
129 TIGR03794 NHPM_micro_HlyD NHPM 90.8 0.41 9E-06 49.1 5.7 40 36-75 55-94 (421)
130 PF00668 Condensation: Condens 90.8 2.5 5.4E-05 40.0 10.8 31 383-413 129-159 (301)
131 PRK03598 putative efflux pump 90.7 0.28 6.1E-06 48.6 4.2 36 39-74 43-78 (331)
132 TIGR01843 type_I_hlyD type I s 90.6 0.43 9.3E-06 48.6 5.6 45 31-75 35-79 (423)
133 PF07831 PYNP_C: Pyrimidine nu 90.4 0.24 5.3E-06 38.1 2.7 29 8-36 28-56 (75)
134 KOG0559 Dihydrolipoamide succi 89.7 0.84 1.8E-05 45.0 6.3 28 9-36 122-149 (457)
135 PRK05035 electron transport co 89.6 0.39 8.5E-06 52.4 4.5 44 10-54 45-88 (695)
136 KOG3373 Glycine cleavage syste 89.4 0.26 5.6E-06 43.1 2.3 42 17-58 87-128 (172)
137 PF13437 HlyD_3: HlyD family s 88.7 0.67 1.5E-05 37.5 4.3 27 9-35 6-32 (105)
138 PRK09439 PTS system glucose-sp 88.4 1 2.3E-05 40.2 5.5 43 27-72 48-125 (169)
139 TIGR00531 BCCP acetyl-CoA carb 88.2 0.6 1.3E-05 41.2 3.9 35 40-74 81-122 (156)
140 PF00358 PTS_EIIA_1: phosphoen 88.1 0.87 1.9E-05 39.0 4.7 43 27-72 30-107 (132)
141 PLN02983 biotin carboxyl carri 88.1 0.58 1.2E-05 44.5 3.9 36 40-75 198-240 (274)
142 COG4656 RnfC Predicted NADH:ub 88.0 0.46 1E-05 49.2 3.5 39 14-54 45-83 (529)
143 cd06255 M14_ASTE_ASPA_like_5 A 88.0 1.5 3.2E-05 42.9 6.9 41 13-53 241-283 (293)
144 cd00210 PTS_IIA_glc PTS_IIA, P 87.9 1.3 2.9E-05 37.5 5.6 59 10-72 6-103 (124)
145 PRK09783 copper/silver efflux 87.8 1.1 2.3E-05 46.0 6.0 46 29-74 112-159 (409)
146 PRK14042 pyruvate carboxylase 87.7 0.64 1.4E-05 49.8 4.5 35 41-75 527-561 (596)
147 PF04952 AstE_AspA: Succinylgl 87.4 1.2 2.7E-05 43.1 6.0 58 12-71 229-290 (292)
148 TIGR03794 NHPM_micro_HlyD NHPM 87.0 0.6 1.3E-05 48.0 3.7 30 8-37 64-93 (421)
149 TIGR00830 PTBA PTS system, glu 86.8 1.6 3.5E-05 36.8 5.5 19 54-72 85-103 (121)
150 COG4072 Uncharacterized protei 86.7 1.4 3E-05 37.4 4.9 44 9-52 98-142 (161)
151 PLN02226 2-oxoglutarate dehydr 86.1 0.82 1.8E-05 47.4 4.0 29 8-36 140-168 (463)
152 TIGR01108 oadA oxaloacetate de 85.8 0.95 2.1E-05 48.5 4.5 36 40-75 518-553 (582)
153 COG4770 Acetyl/propionyl-CoA c 85.7 0.86 1.9E-05 47.7 3.9 35 41-75 577-611 (645)
154 PF02749 QRPTase_N: Quinolinat 85.6 0.79 1.7E-05 36.2 2.9 23 13-35 46-68 (88)
155 COG2190 NagE Phosphotransferas 85.6 1.6 3.5E-05 38.3 5.0 19 54-72 92-110 (156)
156 PRK06302 acetyl-CoA carboxylas 85.5 1 2.2E-05 39.7 3.9 35 40-74 80-121 (155)
157 TIGR01000 bacteriocin_acc bact 85.4 0.78 1.7E-05 47.7 3.6 31 8-38 65-95 (457)
158 TIGR00164 PS_decarb_rel phosph 85.4 1.7 3.7E-05 39.6 5.4 52 12-68 131-182 (189)
159 PRK09294 acyltransferase PapA5 85.2 21 0.00046 36.2 14.0 40 223-262 208-247 (416)
160 PRK12784 hypothetical protein; 84.0 1.2 2.5E-05 34.1 3.0 40 36-75 1-41 (84)
161 PRK14040 oxaloacetate decarbox 83.7 1.3 2.9E-05 47.4 4.5 36 39-74 524-559 (593)
162 COG0845 AcrA Membrane-fusion p 83.7 2.9 6.3E-05 40.8 6.7 47 26-73 54-100 (372)
163 COG2190 NagE Phosphotransferas 83.6 2.5 5.4E-05 37.2 5.3 61 10-70 85-153 (156)
164 PRK05305 phosphatidylserine de 83.5 2.2 4.7E-05 39.4 5.3 54 11-69 150-204 (206)
165 COG1566 EmrA Multidrug resista 83.4 1.8 3.8E-05 43.4 4.9 38 39-76 53-90 (352)
166 PRK09282 pyruvate carboxylase 82.2 1.7 3.7E-05 46.7 4.6 36 39-74 522-557 (592)
167 cd00210 PTS_IIA_glc PTS_IIA, P 80.8 1.5 3.2E-05 37.2 2.8 28 10-37 78-105 (124)
168 TIGR00830 PTBA PTS system, glu 80.4 1.5 3.2E-05 37.0 2.7 28 10-37 78-105 (121)
169 cd06663 Biotinyl_lipoyl_domain 80.2 2.1 4.5E-05 32.1 3.3 25 9-33 49-73 (73)
170 COG0845 AcrA Membrane-fusion p 80.0 1.6 3.5E-05 42.7 3.3 27 9-35 73-99 (372)
171 TIGR02712 urea_carbox urea car 79.4 2.2 4.7E-05 49.8 4.5 36 39-74 1132-1167(1201)
172 PRK09439 PTS system glucose-sp 78.3 4 8.8E-05 36.5 4.9 28 10-37 100-127 (169)
173 PTZ00144 dihydrolipoamide succ 78.1 2.5 5.4E-05 43.4 4.0 29 8-36 93-121 (418)
174 PRK14875 acetoin dehydrogenase 77.9 2.6 5.6E-05 41.7 4.1 29 9-37 52-80 (371)
175 PF02666 PS_Dcarbxylase: Phosp 77.7 3.7 8E-05 37.7 4.7 59 9-69 143-202 (202)
176 cd06849 lipoyl_domain Lipoyl d 77.6 2.7 5.8E-05 30.3 3.1 25 9-33 50-74 (74)
177 TIGR01347 sucB 2-oxoglutarate 77.5 2.8 6.1E-05 42.9 4.2 29 8-36 49-77 (403)
178 PRK05704 dihydrolipoamide succ 77.0 2.9 6.4E-05 42.8 4.2 30 8-37 51-80 (407)
179 COG0508 AceF Pyruvate/2-oxoglu 76.1 3.2 7E-05 42.5 4.2 33 7-39 50-82 (404)
180 PF00358 PTS_EIIA_1: phosphoen 74.9 2 4.4E-05 36.8 2.0 28 10-37 82-109 (132)
181 TIGR01995 PTS-II-ABC-beta PTS 74.8 3.9 8.4E-05 44.2 4.6 61 10-70 542-609 (610)
182 PRK12999 pyruvate carboxylase; 74.4 3.5 7.5E-05 47.9 4.3 35 40-74 1077-1111(1146)
183 PLN02528 2-oxoisovalerate dehy 74.0 4 8.6E-05 42.0 4.2 31 7-37 46-76 (416)
184 PRK03934 phosphatidylserine de 71.1 6.7 0.00014 37.8 4.8 56 11-70 210-265 (265)
185 PRK09824 PTS system beta-gluco 69.6 6 0.00013 42.8 4.5 60 10-70 558-625 (627)
186 TIGR03309 matur_yqeB selenium- 68.2 5.9 0.00013 37.7 3.7 33 39-72 164-196 (256)
187 PRK05691 peptide synthase; Val 68.1 1.9E+02 0.0041 39.1 18.3 28 384-411 802-829 (4334)
188 PRK14844 bifunctional DNA-dire 67.9 8.9 0.00019 47.5 5.8 20 15-34 2423-2442(2836)
189 TIGR01349 PDHac_trf_mito pyruv 67.9 6.7 0.00014 40.6 4.3 30 8-37 48-78 (435)
190 TIGR02645 ARCH_P_rylase putati 67.8 8.8 0.00019 40.1 5.1 43 31-73 405-471 (493)
191 KOG0238 3-Methylcrotonyl-CoA c 66.9 4.7 0.0001 41.9 2.9 34 42-75 604-637 (670)
192 KOG0369 Pyruvate carboxylase [ 66.8 4.6 0.0001 43.3 2.8 34 41-74 1108-1141(1176)
193 PRK10255 PTS system N-acetyl g 66.3 9.6 0.00021 41.4 5.3 43 27-72 526-603 (648)
194 PRK03140 phosphatidylserine de 65.1 7.9 0.00017 37.1 4.0 57 11-70 202-258 (259)
195 cd06910 M14_ASTE_ASPA_like_7 A 64.8 11 0.00024 36.3 5.0 46 18-70 226-272 (272)
196 cd01134 V_A-ATPase_A V/A-type 64.5 17 0.00036 36.6 6.1 56 17-74 54-112 (369)
197 PRK09824 PTS system beta-gluco 64.2 11 0.00023 40.9 5.1 43 27-72 506-583 (627)
198 PF01551 Peptidase_M23: Peptid 64.1 11 0.00023 29.8 4.0 25 50-74 52-76 (96)
199 COG1038 PycA Pyruvate carboxyl 63.9 5.5 0.00012 43.6 2.8 34 42-75 1082-1115(1149)
200 PRK10252 entF enterobactin syn 63.8 69 0.0015 37.6 12.3 63 197-271 5-67 (1296)
201 TIGR01042 V-ATPase_V1_A V-type 63.6 14 0.00031 39.3 5.8 56 17-74 123-181 (591)
202 TIGR01995 PTS-II-ABC-beta PTS 62.9 12 0.00027 40.4 5.3 43 27-72 490-567 (610)
203 PLN00140 alcohol acetyltransfe 62.5 10 0.00023 39.2 4.6 30 383-412 148-177 (444)
204 PRK10255 PTS system N-acetyl g 62.4 10 0.00023 41.1 4.7 29 10-38 578-606 (648)
205 cd06255 M14_ASTE_ASPA_like_5 A 61.9 9.8 0.00021 37.1 4.0 35 39-74 231-265 (293)
206 PRK11892 pyruvate dehydrogenas 61.8 9.5 0.00021 39.8 4.1 30 7-36 50-80 (464)
207 COG0157 NadC Nicotinate-nucleo 61.3 8.2 0.00018 37.2 3.2 20 223-242 188-207 (280)
208 PRK06078 pyrimidine-nucleoside 60.8 18 0.00039 37.3 5.8 42 33-74 329-401 (434)
209 COG4908 Uncharacterized protei 60.6 1.8E+02 0.004 29.7 12.6 87 224-318 218-317 (439)
210 PLN02663 hydroxycinnamoyl-CoA: 60.5 11 0.00023 38.9 4.2 30 383-412 145-174 (431)
211 cd06253 M14_ASTE_ASPA_like_3 A 59.5 11 0.00023 37.0 3.8 34 39-73 229-262 (298)
212 PF02458 Transferase: Transfer 59.3 11 0.00024 38.4 4.1 30 383-412 147-176 (432)
213 PLN02481 Omega-hydroxypalmitat 58.9 12 0.00026 38.6 4.3 30 383-412 158-187 (436)
214 PRK04350 thymidine phosphoryla 58.4 17 0.00037 38.0 5.2 42 32-73 398-463 (490)
215 cd06254 M14_ASTE_ASPA_like_4 A 58.3 13 0.00027 36.2 4.1 37 37-74 221-257 (288)
216 TIGR03327 AMP_phos AMP phospho 58.3 16 0.00036 38.2 5.1 41 33-73 408-472 (500)
217 cd06251 M14_ASTE_ASPA_like_1 A 58.2 13 0.00027 36.2 4.0 35 39-74 219-253 (287)
218 cd06250 M14_PaAOTO_like An unc 57.4 13 0.00028 37.5 4.1 34 40-74 290-323 (359)
219 TIGR02643 T_phosphoryl thymidi 57.2 23 0.0005 36.6 5.8 39 35-73 335-404 (437)
220 PRK11856 branched-chain alpha- 56.1 13 0.00028 38.0 4.0 30 8-37 51-80 (411)
221 TIGR02644 Y_phosphoryl pyrimid 55.9 19 0.00042 36.8 5.0 41 33-73 327-398 (405)
222 COG4072 Uncharacterized protei 55.7 23 0.0005 30.2 4.6 31 43-73 95-125 (161)
223 PF07247 AATase: Alcohol acety 55.7 13 0.00027 38.7 3.9 32 382-413 140-171 (480)
224 PLN02744 dihydrolipoyllysine-r 55.6 12 0.00026 39.8 3.6 29 7-35 160-189 (539)
225 PLN03157 spermidine hydroxycin 54.8 17 0.00038 37.5 4.7 30 383-412 146-175 (447)
226 PF06898 YqfD: Putative stage 54.6 18 0.00039 36.8 4.7 54 10-70 167-227 (385)
227 PRK08072 nicotinate-nucleotide 54.4 13 0.00029 36.0 3.5 21 14-34 66-86 (277)
228 PRK05820 deoA thymidine phosph 54.4 20 0.00044 37.0 5.0 39 35-73 336-405 (440)
229 KOG0557 Dihydrolipoamide acety 54.4 11 0.00023 38.8 2.9 30 46-75 51-80 (470)
230 TIGR02994 ectoine_eutE ectoine 54.0 15 0.00034 36.4 4.0 34 39-73 255-288 (325)
231 PF06898 YqfD: Putative stage 53.9 21 0.00045 36.3 5.0 24 9-32 196-226 (385)
232 cd06252 M14_ASTE_ASPA_like_2 A 53.2 23 0.00049 34.9 5.0 37 37-74 242-278 (316)
233 TIGR00163 PS_decarb phosphatid 52.8 15 0.00033 34.7 3.5 48 21-69 189-236 (238)
234 PF01551 Peptidase_M23: Peptid 52.4 12 0.00027 29.5 2.5 24 13-36 52-75 (96)
235 COG3608 Predicted deacylase [G 51.5 24 0.00052 35.0 4.7 34 39-73 256-289 (331)
236 PRK14698 V-type ATP synthase s 51.3 28 0.00061 39.9 5.9 54 17-72 123-179 (1017)
237 PRK06543 nicotinate-nucleotide 50.9 16 0.00035 35.5 3.4 21 14-34 67-87 (281)
238 TIGR02643 T_phosphoryl thymidi 50.8 12 0.00027 38.4 2.8 27 8-34 376-402 (437)
239 PRK02597 rpoC2 DNA-directed RN 50.8 41 0.00088 39.5 7.0 36 16-51 405-447 (1331)
240 cd01572 QPRTase Quinolinate ph 50.4 18 0.00038 34.9 3.6 22 52-73 61-82 (268)
241 PRK05820 deoA thymidine phosph 50.2 13 0.00028 38.4 2.8 28 7-34 376-403 (440)
242 COG1155 NtpA Archaeal/vacuolar 49.9 37 0.00081 35.7 6.0 57 17-74 121-179 (588)
243 PRK00044 psd phosphatidylserin 49.7 18 0.0004 35.2 3.7 59 12-72 224-287 (288)
244 PRK05742 nicotinate-nucleotide 49.6 17 0.00038 35.2 3.4 21 14-34 68-88 (277)
245 PRK05691 peptide synthase; Val 49.5 4.5E+02 0.0096 35.8 17.0 28 383-410 1854-1881(4334)
246 PRK12467 peptide synthase; Pro 49.1 2.2E+02 0.0047 38.2 14.0 61 198-270 48-108 (3956)
247 PRK06096 molybdenum transport 48.9 18 0.00038 35.2 3.4 15 226-240 192-206 (284)
248 cd01573 modD_like ModD; Quinol 48.4 18 0.0004 34.9 3.4 20 54-73 61-80 (272)
249 PRK09016 quinolinate phosphori 48.3 18 0.0004 35.3 3.4 21 14-34 87-107 (296)
250 PRK07428 nicotinate-nucleotide 47.4 19 0.00042 35.0 3.4 21 14-34 74-94 (288)
251 PRK04350 thymidine phosphoryla 47.2 18 0.00038 37.9 3.2 30 5-34 432-461 (490)
252 PRK05848 nicotinate-nucleotide 47.1 20 0.00043 34.7 3.4 16 226-241 185-200 (273)
253 cd01568 QPRTase_NadC Quinolina 46.9 20 0.00044 34.5 3.4 20 15-34 60-79 (269)
254 PRK06978 nicotinate-nucleotide 46.9 20 0.00043 35.0 3.4 21 14-34 84-104 (294)
255 PRK07896 nicotinate-nucleotide 46.7 20 0.00044 34.9 3.4 21 14-34 78-98 (289)
256 PLN02716 nicotinate-nucleotide 46.4 21 0.00045 35.1 3.4 21 14-34 80-100 (308)
257 TIGR03327 AMP_phos AMP phospho 46.1 18 0.00039 37.9 3.1 30 5-34 441-470 (500)
258 PF07831 PYNP_C: Pyrimidine nu 46.0 19 0.00041 27.6 2.5 29 45-75 30-58 (75)
259 PRK06078 pyrimidine-nucleoside 45.8 17 0.00036 37.6 2.8 30 8-37 372-401 (434)
260 TIGR02876 spore_yqfD sporulati 45.4 39 0.00084 34.4 5.3 15 54-68 208-222 (382)
261 PRK12316 peptide synthase; Pro 45.1 1.8E+02 0.004 39.9 12.6 29 384-412 4228-4256(5163)
262 PF05896 NQRA: Na(+)-transloca 45.0 14 0.00031 35.3 2.0 33 39-71 29-61 (257)
263 PRK06106 nicotinate-nucleotide 44.4 23 0.0005 34.4 3.4 13 140-152 138-150 (281)
264 PRK08385 nicotinate-nucleotide 43.9 24 0.00052 34.2 3.4 20 54-73 63-82 (278)
265 PRK04192 V-type ATP synthase s 43.8 47 0.001 35.6 5.8 55 17-73 123-180 (586)
266 TIGR00999 8a0102 Membrane Fusi 43.6 31 0.00068 32.4 4.2 26 9-34 95-120 (265)
267 PF13375 RnfC_N: RnfC Barrel s 43.0 36 0.00078 27.6 3.8 52 20-72 11-63 (101)
268 TIGR00078 nadC nicotinate-nucl 42.6 26 0.00056 33.7 3.4 13 140-152 122-134 (265)
269 TIGR01334 modD putative molybd 42.6 25 0.00055 34.0 3.4 21 53-73 64-84 (277)
270 PRK14844 bifunctional DNA-dire 42.2 31 0.00068 43.1 4.6 37 15-51 2525-2583(2836)
271 TIGR02876 spore_yqfD sporulati 39.7 53 0.0012 33.3 5.3 53 10-68 163-216 (382)
272 KOG0368 Acetyl-CoA carboxylase 38.9 42 0.0009 39.7 4.7 52 21-72 667-718 (2196)
273 PRK10871 nlpD lipoprotein NlpD 38.2 18 0.00039 35.7 1.6 21 15-35 271-291 (319)
274 PF02749 QRPTase_N: Quinolinat 37.7 57 0.0012 25.5 4.1 39 37-75 17-71 (88)
275 COG1725 Predicted transcriptio 36.8 15 0.00032 31.2 0.7 19 142-160 35-53 (125)
276 TIGR01043 ATP_syn_A_arch ATP s 36.6 67 0.0015 34.4 5.6 56 17-74 120-178 (578)
277 COG0213 DeoA Thymidine phospho 35.0 74 0.0016 32.6 5.3 42 32-73 329-401 (435)
278 PTZ00403 phosphatidylserine de 34.8 42 0.00092 33.7 3.6 61 10-73 280-341 (353)
279 PF01333 Apocytochr_F_C: Apocy 34.1 34 0.00074 28.4 2.3 53 9-68 9-61 (118)
280 PF09891 DUF2118: Uncharacteri 33.6 30 0.00065 30.3 2.1 41 23-74 75-115 (150)
281 CHL00117 rpoC2 RNA polymerase 33.5 52 0.0011 38.9 4.5 37 15-51 405-449 (1364)
282 PRK09603 bifunctional DNA-dire 33.3 58 0.0013 41.0 5.0 52 16-67 2616-2720(2890)
283 PRK09294 acyltransferase PapA5 31.9 37 0.00081 34.5 2.8 26 385-410 113-138 (416)
284 PRK06559 nicotinate-nucleotide 30.7 50 0.0011 32.2 3.3 16 225-240 199-214 (290)
285 PF11020 DUF2610: Domain of un 30.4 82 0.0018 24.4 3.7 30 230-259 51-80 (82)
286 PRK08662 nicotinate phosphorib 30.3 48 0.0011 33.1 3.2 11 141-151 138-148 (343)
287 COG0213 DeoA Thymidine phospho 29.9 46 0.00099 34.0 2.9 28 8-35 373-400 (435)
288 PRK12316 peptide synthase; Pro 29.7 5.2E+02 0.011 35.8 13.2 28 384-411 176-203 (5163)
289 TIGR00164 PS_decarb_rel phosph 29.5 1.5E+02 0.0032 26.8 6.1 63 9-72 79-153 (189)
290 COG3453 Uncharacterized protei 28.9 70 0.0015 27.0 3.3 36 142-179 47-82 (130)
291 KOG1668 Elongation factor 1 be 27.6 36 0.00079 31.8 1.7 27 15-41 181-207 (231)
292 PRK07188 nicotinate phosphorib 27.3 65 0.0014 32.4 3.5 21 54-74 76-96 (352)
293 PRK11637 AmiB activator; Provi 27.2 69 0.0015 33.0 3.8 21 54-74 382-402 (428)
294 PF03869 Arc: Arc-like DNA bin 27.0 1.8E+02 0.004 20.2 4.8 48 217-266 2-49 (50)
295 PRK02259 aspartoacylase; Provi 26.2 31 0.00068 33.5 1.0 49 17-68 231-281 (288)
296 TIGR03443 alpha_am_amid L-amin 25.2 1.2E+03 0.026 27.7 14.5 68 241-322 42-110 (1389)
297 PRK11391 etp phosphotyrosine-p 24.1 64 0.0014 27.8 2.5 32 140-175 44-75 (144)
298 PRK10126 tyrosine phosphatase; 23.8 57 0.0012 28.1 2.1 32 140-175 44-75 (147)
299 cd00516 PRTase_typeII Phosphor 23.7 80 0.0017 30.3 3.4 21 53-73 54-74 (281)
300 PF01402 RHH_1: Ribbon-helix-h 23.6 2E+02 0.0044 18.2 4.9 37 224-260 2-38 (39)
301 smart00226 LMWPc Low molecular 22.7 65 0.0014 27.2 2.2 32 140-176 41-72 (140)
302 cd06848 GCS_H Glycine cleavage 22.0 89 0.0019 24.8 2.8 29 46-74 27-56 (96)
303 PRK05305 phosphatidylserine de 21.7 2.1E+02 0.0046 26.2 5.6 62 10-72 99-173 (206)
304 cd01571 NAPRTase_B Nicotinate 20.6 98 0.0021 30.3 3.3 22 54-75 57-78 (302)
No 1
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.7e-86 Score=667.95 Aligned_cols=384 Identities=31% Similarity=0.480 Sum_probs=327.0
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|++.+++...
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~~~~- 85 (407)
T PRK05704 7 VPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAA- 85 (407)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCccccc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999754432110
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
..+ +...++ ....+. +.. . .+... ...+.+||+||+||+||||||++|+
T Consensus 86 -----~~~----~~~~~~-----~~~~~~--~~~---~-----------~~~~~-~~~~~asP~aR~lA~e~gidl~~v~ 134 (407)
T PRK05704 86 -----AAA----AAAAAA-----AAAAPA--QAQ---A-----------AAAAE-QSNDALSPAARKLAAENGLDASAVK 134 (407)
T ss_pred -----CCC----CCCCCC-----CCCCCC--CCC---C-----------CccCC-CccccCCchhhhHHhhcCCChhhCC
Confidence 000 000000 000000 000 0 00000 1135799999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcCCCcc-cccC---CCC---CCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchH
Q 014822 161 GSGPKGRIVAKDVEAEAAAAGPAAS-VAAA---GPA---GIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDA 232 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~~~~~-~~~~---~~~---~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~ 232 (418)
|||++|||+++||++|+.+....+. +++. ..+ .....+.+|++++||.|+++|++| +++||||++.++|+|+
T Consensus 135 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~ 214 (407)
T PRK05704 135 GTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTP 214 (407)
T ss_pred CCCCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHH
Confidence 9999999999999999753211100 0000 000 011235689999999999999999 8999999999999999
Q ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCC
Q 014822 233 LDALYKKIKSK-------GVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKAD 305 (418)
Q Consensus 233 l~~~~~~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~ 305 (418)
|+++|+++++. ++||++||+||+++||.+||.||++|+ ++++++|+++|||+||++++||++|||+++++++
T Consensus 215 l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~s 293 (407)
T PRK05704 215 VMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASID-GDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLS 293 (407)
T ss_pred HHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEc-CCeEEEcCCCCeEEEEECCCceEeCcCCCcccCC
Confidence 99999998741 699999999999999999999999996 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEE
Q 014822 306 IYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQV 385 (418)
Q Consensus 306 l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~l 385 (418)
+.+|+++++++.+++|+|+|+++|++||||||||+|++|+.+|+||||+||++||++|++.++|++. ||++++|++|+|
T Consensus 294 l~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~l 372 (407)
T PRK05704 294 FAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYL 372 (407)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred EEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 386 NVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 386 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
||+||||+|||+++++||++|+++||+|+.||+
T Consensus 373 sls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 405 (407)
T PRK05704 373 ALSYDHRIIDGKEAVGFLVTIKELLEDPERLLL 405 (407)
T ss_pred EEEechhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence 999999999999999999999999999998764
No 2
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.6e-86 Score=664.17 Aligned_cols=384 Identities=29% Similarity=0.487 Sum_probs=326.8
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|++|+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|++|++|++|.+.++..
T Consensus 5 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~~--- 81 (403)
T TIGR01347 5 VPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDAT--- 81 (403)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCCc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997543210
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
.. . +....+. . . +.+ + .+. .+ .+... +.++.+||+||+||+|+||||++|+
T Consensus 82 ----~~-~----~~~~~~~-~-~--~~~-~--~~~---~~---------~~~~~-~~~~~asP~aR~lA~e~gvdl~~v~ 132 (403)
T TIGR01347 82 ----AA-P----PAKSGEE-K-E--ETP-A--ASA---AA---------APTAA-ANRPSLSPAARRLAKEHGIDLSAVP 132 (403)
T ss_pred ----cc-c----cccccCC-C-C--CCC-C--CCC---CC---------CCcCc-cccccCCchhhhHHHHcCCChhhCC
Confidence 00 0 0000000 0 0 000 0 000 00 00001 1256799999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcCCCcccccC---CCC--CCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHH
Q 014822 161 GSGPKGRIVAKDVEAEAAAAGPAASVAAA---GPA--GIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALD 234 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~ 234 (418)
|||++|||+++||++|+......+.+.+. +.+ +....+.+|++++||.|+++|++| .++|||+++.++|+|+|+
T Consensus 133 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~ 212 (403)
T TIGR01347 133 GTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVM 212 (403)
T ss_pred CCCCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHH
Confidence 99999999999999997532111000000 000 011235689999999999999999 799999999999999999
Q ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHH
Q 014822 235 ALYKKIKSK-------GVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIY 307 (418)
Q Consensus 235 ~~~~~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~ 307 (418)
++|+++++. ++||++||+||+++||++||.||++|+ ++++++|+++|||+||++++||++|||++++++++.
T Consensus 213 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~ 291 (403)
T TIGR01347 213 ELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEID-GDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFA 291 (403)
T ss_pred HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEc-CCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHH
Confidence 999998741 699999999999999999999999996 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEE
Q 014822 308 TLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNV 387 (418)
Q Consensus 308 ~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lsl 387 (418)
+|+++++++.+++|+|+|+++|++||||||||+|++|..+|+||||+||++||++|++.++|++. ||++++|++|+|||
T Consensus 292 eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsL 370 (403)
T TIGR01347 292 DIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLAL 370 (403)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999986 79999999999999
Q ss_pred eecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 388 TADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 388 t~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+||||++||+++++||++|+++||+|+.||+
T Consensus 371 t~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 401 (403)
T TIGR01347 371 SYDHRLIDGKEAVTFLVTIKELLEDPRRLLL 401 (403)
T ss_pred EecchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence 9999999999999999999999999998764
No 3
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.4e-85 Score=671.90 Aligned_cols=407 Identities=36% Similarity=0.575 Sum_probs=328.7
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCC-ccccCceeEEeccChhhHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGG-VASVGSAIALLAESEDEIAE 79 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~-~v~~g~~l~~i~~~~~~~~~ 79 (418)
||+||++|+||+|++|+|++||.|++||+||+|||||++++++||.+|+|.+|++++|+ .|++|++|+++.+++++...
T Consensus 117 mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~ 196 (539)
T PLN02744 117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGK 196 (539)
T ss_pred CCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCcccccc
Confidence 79999999999999999999999999999999999999999999999999999999996 79999999998654433211
Q ss_pred HHhhhhcCC-CCCCCCC-CCCcccccc-cCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCc
Q 014822 80 AQAKAAASG-SPSSPAS-ETSNSAAVV-AAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVEL 156 (418)
Q Consensus 80 ~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl 156 (418)
.....+... ....++. ..+...... ...+++.+.+. ... +......+.++++||+||+||+||||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~i~ASP~aRrLAre~GVDL 266 (539)
T PLN02744 197 FKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPK-ASK---------PSAPPSSGDRIFASPLARKLAEDNNVPL 266 (539)
T ss_pred ccccccccccccccccccCCCCCcccccccCCCCCcccc-ccc---------ccccccccccccCCchhHHHHHHcCCCH
Confidence 110000000 0000000 000000000 00000000000 000 0000011225789999999999999999
Q ss_pred cccccCCCCCccchhhHHHHHHhcCCCcc-cccCC-CCCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHH
Q 014822 157 ARVVGSGPKGRIVAKDVEAEAAAAGPAAS-VAAAG-PAGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDAL 233 (418)
Q Consensus 157 ~~v~gtG~~Gri~~~DV~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l 233 (418)
+.|+|||++|||+++||++|+....+.+. +++.+ ..+....+.+|+++|||.|+++|++| +++||||++.++|+|+|
T Consensus 267 s~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L 346 (539)
T PLN02744 267 SSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKL 346 (539)
T ss_pred HHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHH
Confidence 99999999999999999999854221111 10000 00111235789999999999999999 89999999999999999
Q ss_pred HHHHHHHhc-------CCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCH
Q 014822 234 DALYKKIKS-------KGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADI 306 (418)
Q Consensus 234 ~~~~~~~k~-------~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l 306 (418)
+++|+++++ .++||++||+||+++||++||+||++|+ ++.+++|+++|||+||++++||++|||++++++++
T Consensus 347 ~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~-~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl 425 (539)
T PLN02744 347 MALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWT-DDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGL 425 (539)
T ss_pred HHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeec-cCcEEEeCCcceEEEEECCCCeEECcCCCcccCCH
Confidence 999999874 2699999999999999999999999996 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecC-CCCCCCeEecCCCCCceEEEeccceeEEEEc-cCCeEEEEeEEE
Q 014822 307 YTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLG-MFGVDRFDAILPPGTGAIMAVGASEPTVVAT-KDGRIGMKNQMQ 384 (418)
Q Consensus 307 ~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg-~~g~~~~~pii~~p~~~il~iG~~~~~~v~~-~~g~i~~r~~m~ 384 (418)
.+|+++++++.+++|+|+|+++|++||||||||+| ++|+.+|+||||+||++||++|++.++|++. .+|++++|++|+
T Consensus 426 ~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~ 505 (539)
T PLN02744 426 STIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMS 505 (539)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeE
Confidence 99999999999999999999999999999999998 8999999999999999999999999999873 478999999999
Q ss_pred EEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 385 VNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 385 lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
|||+||||+|||+++++||++|+++||+|+.|||
T Consensus 506 lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 506 VTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred EeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 9999999999999999999999999999998875
No 4
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=4.8e-84 Score=652.55 Aligned_cols=387 Identities=25% Similarity=0.396 Sum_probs=326.6
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+.+|+|.++++++|+.+.+|++|+.|..++++...
T Consensus 3 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~- 81 (416)
T PLN02528 3 LAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHLR- 81 (416)
T ss_pred CCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCcccc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999654332100
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
. . . . ..++ .+ . ..+.+ .+. .+. .+ .. ..+++||+||+||+||||||++|+
T Consensus 82 -~-~-~-~--~~~~--~~----~--~~~~~--~~~--~~~---------~~--~~-~~~~asP~aR~lA~e~gvdl~~v~ 131 (416)
T PLN02528 82 -S-D-S-L--LLPT--DS----S--NIVSL--AES--DER---------GS--NL-SGVLSTPAVRHLAKQYGIDLNDIL 131 (416)
T ss_pred -c-c-C-C--CCCC--CC----c--cCCCC--CCC--Ccc---------cc--cc-CCccCChHHHHHHHHhCCCHHHCC
Confidence 0 0 0 0 0000 00 0 00000 000 000 00 01 135799999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcC----CCcccc--cCCC--------CCC-C--CceeccCCchhHHHHHHhhhcCCcceEE
Q 014822 161 GSGPKGRIVAKDVEAEAAAAG----PAASVA--AAGP--------AGI-E--LASVVPFTTMQGAVSRNMVESLAVPTFR 223 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~----~~~~~~--~~~~--------~~~-~--~~~~~~~s~~r~~ia~~m~~s~~iP~~~ 223 (418)
|||++|||+++||++|+.... +.+.+. ++.. .+. . ..+.+|++++||.|+++|++|+++||||
T Consensus 132 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~ 211 (416)
T PLN02528 132 GTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFH 211 (416)
T ss_pred CCCCCCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEE
Confidence 999999999999999975321 100000 0000 000 0 1346899999999999999999999999
Q ss_pred EEEEEEchHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCCcCcccccCC-CeEEEcCceeEEEEEEeCCCeEEe
Q 014822 224 VGYTITTDALDALYKKIKSK------GVTMTALLAKATALALVQHPVVNSSCRDG-NSFIYNSSINIAVAVAVDGGLITP 296 (418)
Q Consensus 224 ~~~~vDvt~l~~~~~~~k~~------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~-~~i~~~~~i~i~~av~~~~gl~~p 296 (418)
+..++|+|+|+++|+++++. ++||++||+||+++||++||+||++|+++ +.+++|+++|||+||++++||++|
T Consensus 212 ~~~eid~~~l~~~r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vP 291 (416)
T PLN02528 212 YVEEINVDALVELKASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVP 291 (416)
T ss_pred EEEEEEhHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEec
Confidence 99999999999999998742 69999999999999999999999999643 379999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCe
Q 014822 297 VLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGR 376 (418)
Q Consensus 297 vi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~ 376 (418)
||++++++++.+|+++++++.+++|+|+|+++|++||||||||+|++|..+|+||||+||++||++|++.++|++.++|+
T Consensus 292 vi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~ 371 (416)
T PLN02528 292 NIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGN 371 (416)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865689
Q ss_pred EEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 377 IGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 377 i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+++|++|+|||+||||+|||+++++||++|+++||+|+.|||
T Consensus 372 i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~lll 413 (416)
T PLN02528 372 VYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLML 413 (416)
T ss_pred EEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence 999999999999999999999999999999999999998875
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=7.9e-84 Score=676.54 Aligned_cols=413 Identities=27% Similarity=0.406 Sum_probs=325.4
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|.+.+++....
T Consensus 140 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~ 219 (590)
T TIGR02927 140 MPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGAAAAED 219 (590)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997544322110
Q ss_pred HhhhhcC-CCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCcccc
Q 014822 81 QAKAAAS-GSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARV 159 (418)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v 159 (418)
....... ....++....+.........+.+ ..+.....+.. .......+....+.++++||+||+||+||||||++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v 297 (590)
T TIGR02927 220 AKAEEEAEAKAEAKPEEKPDPKKDEAAEPEP-DEPEAEKAEKK-EEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSV 297 (590)
T ss_pred cccccccccccccccCCCCcccccccccccc-ccccccccccc-cccccccccccccCcccCCchhHHHHHHcCCCHHHC
Confidence 0000000 00000000000000000000000 00000000000 000000000011236789999999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHhcC---CCccc------ccC---C-CCCCC-----CceeccCCchhHHHHHHhhhc-CCcc
Q 014822 160 VGSGPKGRIVAKDVEAEAAAAG---PAASV------AAA---G-PAGIE-----LASVVPFTTMQGAVSRNMVES-LAVP 220 (418)
Q Consensus 160 ~gtG~~Gri~~~DV~~~~~~~~---~~~~~------~~~---~-~~~~~-----~~~~~~~s~~r~~ia~~m~~s-~~iP 220 (418)
+|||++|||+++||++|+.... .++.+ +++ . ..+.+ .++.+|+++|||.|+++|++| .++|
T Consensus 298 ~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~~~iP 377 (590)
T TIGR02927 298 KGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREALQASA 377 (590)
T ss_pred CCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHhccCC
Confidence 9999999999999999985421 10000 000 0 00001 245789999999999999999 7899
Q ss_pred eEEEEEEEEchHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccC-CCeEEEcCceeEEEEEEeCCC
Q 014822 221 TFRVGYTITTDALDALYKKIKSK-------GVTMTALLAKATALALVQHPVVNSSCRD-GNSFIYNSSINIAVAVAVDGG 292 (418)
Q Consensus 221 ~~~~~~~vDvt~l~~~~~~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~-~~~i~~~~~i~i~~av~~~~g 292 (418)
|||++.++|+|+|+++|+++|+. ++||++||+||+++||++||.||++|++ ++.|++|+++||||||++++|
T Consensus 378 h~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~G 457 (590)
T TIGR02927 378 QLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAG 457 (590)
T ss_pred eEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCC
Confidence 99999999999999999999751 6899999999999999999999999963 358999999999999999999
Q ss_pred eEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEc
Q 014822 293 LITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVAT 372 (418)
Q Consensus 293 l~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~ 372 (418)
|++|||++++++++.+|+++++++.+++|+|+|+++|++||||||||+|++|+++|+||||+||++||++|++.++|++.
T Consensus 458 L~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~ 537 (590)
T TIGR02927 458 LLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVI 537 (590)
T ss_pred cEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --cCC--eEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCccc
Q 014822 373 --KDG--RIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRD 415 (418)
Q Consensus 373 --~~g--~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ 415 (418)
.+| .+++|.+|+|||+||||+|||+.+++||++|+++||||..
T Consensus 538 ~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 538 TDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred ccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 234 4999999999999999999999999999999999999864
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.5e-83 Score=652.31 Aligned_cols=411 Identities=38% Similarity=0.606 Sum_probs=328.7
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCc-cccCceeEEeccChhhHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV-ASVGSAIALLAESEDEIAE 79 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~-v~~g~~l~~i~~~~~~~~~ 79 (418)
||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. +++|++|++|++.+++...
T Consensus 4 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~~~ 83 (435)
T TIGR01349 4 MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDVAD 83 (435)
T ss_pred cCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcccc
Confidence 899999999999999999999999999999999999999999999999999999999999 9999999999754432210
Q ss_pred HHhhhhcCCCCCCCCCCCCccc-ccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccc
Q 014822 80 AQAKAAASGSPSSPASETSNSA-AVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELAR 158 (418)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~ 158 (418)
........+.+.++...++.+. ......+.+++... ...+. ......+. ..+.++++||+||+||+||||||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-~~~~~~~asP~vR~lA~e~gvdl~~ 158 (435)
T TIGR01349 84 AFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQ-SPEPS---SPAPLSDK-ESGDRIFASPLAKKLAKEKGIDLSA 158 (435)
T ss_pred ccccccccccccCCCCcccccCCCCcCCCCCCCcccc-ccccc---cccccccc-cccccccCCHHHHHHHHHcCCCHhH
Confidence 0000000000000000000000 00000000000000 00000 00000000 1112578999999999999999999
Q ss_pred cccCCCCCccchhhHHHHHHhcC-CCccc-ccC--C----CCC-C-CCceeccCCchhHHHHHHhhhc-CCcceEEEEEE
Q 014822 159 VVGSGPKGRIVAKDVEAEAAAAG-PAASV-AAA--G----PAG-I-ELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYT 227 (418)
Q Consensus 159 v~gtG~~Gri~~~DV~~~~~~~~-~~~~~-~~~--~----~~~-~-~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~ 227 (418)
|+|||++|||+++||++|+.... .++.+ .++ . +.+ . ...+.+|++++||.|+++|++| +++|||+++.+
T Consensus 159 v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~e 238 (435)
T TIGR01349 159 VAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIE 238 (435)
T ss_pred CCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEE
Confidence 99999999999999999985421 11111 000 0 000 1 1135689999999999999999 89999999999
Q ss_pred EEchHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCC
Q 014822 228 ITTDALDALYKKIKS-----KGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDAD 302 (418)
Q Consensus 228 vDvt~l~~~~~~~k~-----~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~ 302 (418)
+|+|+|+++|+++++ .++||++||+||+++||++||.||++|+ ++++++|+++|||+||++++||++|||++++
T Consensus 239 vd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~-~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~ 317 (435)
T TIGR01349 239 CNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWT-DNFIRRYKNVDISVAVATPDGLITPIVRNAD 317 (435)
T ss_pred EEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEe-CCeEEEeCCeeEEEEEECCCCeEECCCCCcc
Confidence 999999999999985 3799999999999999999999999996 4689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCe---EEE
Q 014822 303 KADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGR---IGM 379 (418)
Q Consensus 303 ~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~---i~~ 379 (418)
++++.+|+++++++.+++|+|+|.++|++||||||||+|++|..+|+||||+||++||++|++.++|++. +|+ +++
T Consensus 318 ~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~i~~ 396 (435)
T TIGR01349 318 AKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKGFAV 396 (435)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCccceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 555 999
Q ss_pred EeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 380 KNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 380 r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
|++|+|+|+||||++||+++++||++|+++||+|+.|||
T Consensus 397 ~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 397 ASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999998875
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=4.1e-83 Score=666.38 Aligned_cols=402 Identities=28% Similarity=0.397 Sum_probs=327.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||+ |+||+|++|+|++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|++|++|+.|...+++...
T Consensus 121 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~- 198 (546)
T TIGR01348 121 VPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGSTPAT- 198 (546)
T ss_pred CCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCCCccc-
Confidence 899999 999999999999999999999999999999999999999999999999999999999999999754432100
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCcc-ccChhHHHHHHHcCCCcccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRI-VASPYAKKLANELKVELARV 159 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~asP~ar~la~e~gidl~~v 159 (418)
...... ..+..+.+..... .+...+.+.....+. ... .. ...+.++ ++||+||+||+||||||++|
T Consensus 199 -~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~asP~aR~lA~e~gvdl~~v 265 (546)
T TIGR01348 199 -APAPAS---AQPAAQSPAATQP---EPAAAPAAAKAQAPA--PQQ---AG-TQNPAKVDHAAPAVRRLAREFGVDLSAV 265 (546)
T ss_pred -ccCccc---ccccCCCCccccc---cccCCCCCCCccCcc--ccc---cc-ccccccccCCCHHHHHHHHHcCCCHhhC
Confidence 000000 0000000000000 000000000000000 000 00 0011245 69999999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHhcC--CCcccc--c-C-C---CCCC------CCceeccCCchhHHHHHHhhhc-CCcceEE
Q 014822 160 VGSGPKGRIVAKDVEAEAAAAG--PAASVA--A-A-G---PAGI------ELASVVPFTTMQGAVSRNMVES-LAVPTFR 223 (418)
Q Consensus 160 ~gtG~~Gri~~~DV~~~~~~~~--~~~~~~--~-~-~---~~~~------~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~ 223 (418)
+|||++|||+++||++|+.... .++.+. + . + ..+. ...+.+|+++|||.|+++|++| +++||||
T Consensus 266 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~ 345 (546)
T TIGR01348 266 KGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVT 345 (546)
T ss_pred CCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEE
Confidence 9999999999999999975321 110010 0 0 0 0000 0135689999999999999999 8999999
Q ss_pred EEEEEEchHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCCcCcccccCC-CeEEEcCceeEEEEEEeCCCeEEe
Q 014822 224 VGYTITTDALDALYKKIKSK------GVTMTALLAKATALALVQHPVVNSSCRDG-NSFIYNSSINIAVAVAVDGGLITP 296 (418)
Q Consensus 224 ~~~~vDvt~l~~~~~~~k~~------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~-~~i~~~~~i~i~~av~~~~gl~~p 296 (418)
++.++|+|+|+++|+++|+. ++||++||+||+++||++||.||++|+++ +.+++|+++|||+||++++||++|
T Consensus 346 ~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vP 425 (546)
T TIGR01348 346 HFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVP 425 (546)
T ss_pred EEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEEC
Confidence 99999999999999999852 69999999999999999999999999743 579999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCe
Q 014822 297 VLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGR 376 (418)
Q Consensus 297 vi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~ 376 (418)
||++++++++.+|+++++++.+++|+|+|+++|++||||||||+|++|+.+|+||||+||++||++|++.++|+++ +|+
T Consensus 426 vi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~ 504 (546)
T TIGR01348 426 VIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKE 504 (546)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 789
Q ss_pred EEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 377 IGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 377 i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+++|.+|+|||+||||++||+++++||++|+++||+|..|||
T Consensus 505 ~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 505 FEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999999998875
No 8
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=2.9e-82 Score=618.98 Aligned_cols=409 Identities=44% Similarity=0.644 Sum_probs=344.6
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCC-CccccCceeEEeccChhhHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEG-GVASVGSAIALLAESEDEIAE 79 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g-~~v~~g~~l~~i~~~~~~~~~ 79 (418)
||.|+++|++|.|++|.++|||.+.+||+||||||||++|+++++++|+|.||+++|| ..|++|.+|++|.+.+++++.
T Consensus 43 MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~ 122 (470)
T KOG0557|consen 43 MPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAA 122 (470)
T ss_pred cCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 569999999999999999988
Q ss_pred HHhhhhcCCCC-CCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccc
Q 014822 80 AQAKAAASGSP-SSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELAR 158 (418)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~ 158 (418)
+.....+.+.. ..++++ +.++++..+.+ ++++....+ ..+.+.+... +.++.+||++|+||.|+|||++.
T Consensus 123 ~k~~k~~~s~~~~~~~~~-~~~app~~~~~---~~Ps~~~~~----~~~~p~~~~~-~~r~~asP~Ak~la~e~~l~ls~ 193 (470)
T KOG0557|consen 123 FKLPKDEASSGEQSPSAA-PPPAPPKVAKP---EAPSAPSKP----STSQPVKAKN-GGRVFASPLAKKLAEEKGLELSS 193 (470)
T ss_pred hhccccccccccCCcccC-CCCCCCccccc---CCCCCCccc----cccccCCcCC-CCceecChHHHHHHHHhCCcccc
Confidence 77654431111 111111 11111111111 011000000 0000111111 33899999999999999999999
Q ss_pred cccCCCCCccchhhHHHHHHhcC------CCcccc--c--CCCCCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEE
Q 014822 159 VVGSGPKGRIVAKDVEAEAAAAG------PAASVA--A--AGPAGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYT 227 (418)
Q Consensus 159 v~gtG~~Gri~~~DV~~~~~~~~------~~~~~~--~--~~~~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~ 227 (418)
|+||||+|||++.||++|++... ++++.+ . ++..+.+.++++|++.||+.|+++|.+| ++|||||++..
T Consensus 194 i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~ 273 (470)
T KOG0557|consen 194 IPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVD 273 (470)
T ss_pred CcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeee
Confidence 99999999999999999987422 111100 0 1112234579999999999999999999 99999999999
Q ss_pred EEchHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCC
Q 014822 228 ITTDALDALYKKIK----SKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADK 303 (418)
Q Consensus 228 vDvt~l~~~~~~~k----~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~ 303 (418)
++++.|+++|+.++ ..++|+++|++||++.||.++|+.|++|++++.|++++.|||+++|.+++||++|+|++++.
T Consensus 274 ~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na~~ 353 (470)
T KOG0557|consen 274 VNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNADA 353 (470)
T ss_pred eehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhccc
Confidence 99999999999999 45899999999999999999999999998767899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEE--ccCCeEEEEe
Q 014822 304 ADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVA--TKDGRIGMKN 381 (418)
Q Consensus 304 ~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~--~~~g~i~~r~ 381 (418)
+.+.+|.+.+.++..++|.++|.+++++||||+||||||||++.|+.++||||.+||++|..++..|. +.++++....
T Consensus 354 kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~ 433 (470)
T KOG0557|consen 354 KGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVIN 433 (470)
T ss_pred ccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999998884 4467788899
Q ss_pred EEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 382 QMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 382 ~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
.|+|+|++|||++||+.++|||+.|++++|||+.|||
T Consensus 434 ~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 434 AMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 9999999999999999999999999999999999986
No 9
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.6e-80 Score=629.51 Aligned_cols=395 Identities=43% Similarity=0.651 Sum_probs=328.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChh-hHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED-EIAE 79 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~-~~~~ 79 (418)
||+||++|++|+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|.+|++|+.|.+.++ +...
T Consensus 7 ~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~~~~~ 86 (411)
T PRK11856 7 MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAA 86 (411)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCCcccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999976543 2110
Q ss_pred HHhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCcccc
Q 014822 80 AQAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARV 159 (418)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v 159 (418)
. +..... .+ ...+ .....+.....+. .. . .+......+.++||+||+||+||||||++|
T Consensus 87 ~----~~~~~~-~~-~~~~----~~~~~~~~~~~~~-~~--------~--~~~~~~~~~~~asP~~r~la~~~gidl~~i 145 (411)
T PRK11856 87 A----AEAAPE-AP-APEP----APAAAAAAAAAPA-AA--------A--APAAPAAAAAKASPAVRKLARELGVDLSTV 145 (411)
T ss_pred c----cCCCCC-CC-CCCC----CCCCCCCCCCCCC-cc--------c--CcccccCCcccCChHHHHHHHHcCCCHHHC
Confidence 0 000000 00 0000 0000000000000 00 0 000011113479999999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHhcCCCcccccCC----C-CCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHH
Q 014822 160 VGSGPKGRIVAKDVEAEAAAAGPAASVAAAG----P-AGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDAL 233 (418)
Q Consensus 160 ~gtG~~Gri~~~DV~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l 233 (418)
+|||++|||+++||++|+.+...++.+.... + ......+.+|++++||.|+++|.+| .++|||+++.++|+|+|
T Consensus 146 ~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 146 KGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred cCCCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 9999999999999999985432111100000 0 0011256789999999999999999 89999999999999999
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHH
Q 014822 234 DALYKKIKSK--GVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSR 311 (418)
Q Consensus 234 ~~~~~~~k~~--~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~ 311 (418)
+++++++++. ++|||++|+||+++||+++|+||++|. ++++++|++||+|+||++++||++|+|+++++++|.+|++
T Consensus 226 ~~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~-~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~ 304 (411)
T PRK11856 226 LALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWD-DDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAR 304 (411)
T ss_pred HHHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEe-CCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHH
Confidence 9999998754 899999999999999999999999996 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeecc
Q 014822 312 KWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADH 391 (418)
Q Consensus 312 ~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DH 391 (418)
+++++++++|++++.++++.+|||+|||+||+|..+|+|++++||++||+||++.++|++. +|++++|.+|||+|+|||
T Consensus 305 ~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~DH 383 (411)
T PRK11856 305 EIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDH 383 (411)
T ss_pred HHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEeeh
Confidence 9999999999999999999999999999999999999999999999999999999999986 899999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhcCcccccC
Q 014822 392 RVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 392 RviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
|+|||+|+++||+.|+++||+|+.|||
T Consensus 384 RviDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 384 RVIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred hhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 999999999999999999999998875
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2.2e-80 Score=657.17 Aligned_cols=396 Identities=30% Similarity=0.385 Sum_probs=324.9
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|.+++++...
T Consensus 211 ~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~~~~~- 287 (633)
T PRK11854 211 VPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAA- 287 (633)
T ss_pred cCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCCCCccc-
Confidence 89999 999999999999999999999999999999999999999999999999999999999999999754432100
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
. ...+ .+..+++. ......+++ .+...... . .... ..+.++++||+||+||+||||||++|+
T Consensus 288 -~--~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~----~---~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~ 349 (633)
T PRK11854 288 -A--PAKQ---EAAAPAPA--AAKAEAPAA--APAAKAEG----K---SEFA-ENDAYVHATPLVRRLAREFGVNLAKVK 349 (633)
T ss_pred -c--cccc---CCCCCCcc--ccccCCCCC--CCcccccc----c---cccc-ccCCccCCCchhHHHHHHhCCChhhcC
Confidence 0 0000 00000000 000000000 00000000 0 0000 112257899999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcC--CCcccc---cC-C----C-CC--C----CCceeccCCchhHHHHHHhhhc-CCcceE
Q 014822 161 GSGPKGRIVAKDVEAEAAAAG--PAASVA---AA-G----P-AG--I----ELASVVPFTTMQGAVSRNMVES-LAVPTF 222 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~--~~~~~~---~~-~----~-~~--~----~~~~~~~~s~~r~~ia~~m~~s-~~iP~~ 222 (418)
|||++|||+++||++|+.... .++++. .. . . .+ . ...+.+||+++||.|+++|.+| .++|||
T Consensus 350 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~ 429 (633)
T PRK11854 350 GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHV 429 (633)
T ss_pred CCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeE
Confidence 999999999999999975421 000010 00 0 0 00 0 0134689999999999999999 799999
Q ss_pred EEEEEEEchHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhhCCcCcccccC-CCeEEEcCceeEEEEEEeCCCe
Q 014822 223 RVGYTITTDALDALYKKIKS--------KGVTMTALLAKATALALVQHPVVNSSCRD-GNSFIYNSSINIAVAVAVDGGL 293 (418)
Q Consensus 223 ~~~~~vDvt~l~~~~~~~k~--------~~~s~~~~~~~Av~~Al~~~P~ln~~~~~-~~~i~~~~~i~i~~av~~~~gl 293 (418)
+++.++|+|+|+++|+++++ .++||++||+||+++||++||+||++|++ ++++++|+++|+|+||++++||
T Consensus 430 ~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL 509 (633)
T PRK11854 430 TQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGL 509 (633)
T ss_pred EEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCce
Confidence 99999999999999997762 26899999999999999999999999963 5689999999999999999999
Q ss_pred EEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEcc
Q 014822 294 ITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATK 373 (418)
Q Consensus 294 ~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~ 373 (418)
++|||+++++++|.+|+++++++.+++|+++|.+++++||||+|||+||+|+++|+||||+||++||++|++.++|+++
T Consensus 510 ~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~- 588 (633)
T PRK11854 510 VVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN- 588 (633)
T ss_pred EEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 374 DGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 374 ~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+|.+++|.+|+|||+||||++||+|+++||++|+++||+|..|||
T Consensus 589 ~~~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 589 GKEFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred CCEEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 788999999999999999999999999999999999999998876
No 11
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=8.6e-80 Score=644.48 Aligned_cols=397 Identities=32% Similarity=0.476 Sum_probs=324.8
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||+ |++|+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+.|.+|++|+.+.+.+++...
T Consensus 124 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~~~~~- 201 (547)
T PRK11855 124 VPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAPAA- 201 (547)
T ss_pred cCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCCCcccc-
Confidence 899999 999999999999999999999999999999999999999999999999999999999999999764322100
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCcc-ccChhHHHHHHHcCCCcccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRI-VASPYAKKLANELKVELARV 159 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~asP~ar~la~e~gidl~~v 159 (418)
..... +....+.........+.+...+. ... ..+....+ +. ++||+||+||+||||||++|
T Consensus 202 -~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~-~~~~asP~aR~lA~e~gidl~~v 263 (547)
T PRK11855 202 -AAAPA------AAAPAAAAAAAPAPAPAAAAAPA-AAA---------PAAAAAPG-KAPHASPAVRRLARELGVDLSQV 263 (547)
T ss_pred -ccCCC------CCCCccccccCCCCCCcccccCC-ccc---------cccccccC-CcccCChHHHHHHHHhCCCHHHC
Confidence 00000 00000000000000000000000 000 00000111 34 79999999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHhcCCC-ccc----ccC---CC--CCC--------CCceeccCCchhHHHHHHhhhc-CCcc
Q 014822 160 VGSGPKGRIVAKDVEAEAAAAGPA-ASV----AAA---GP--AGI--------ELASVVPFTTMQGAVSRNMVES-LAVP 220 (418)
Q Consensus 160 ~gtG~~Gri~~~DV~~~~~~~~~~-~~~----~~~---~~--~~~--------~~~~~~~~s~~r~~ia~~m~~s-~~iP 220 (418)
+|||++|||+++||++|+.....+ +.+ .+. .. .+. ...+.+|++++||.|+++|++| +++|
T Consensus 264 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP 343 (547)
T PRK11855 264 KGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIP 343 (547)
T ss_pred cCCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCC
Confidence 999999999999999997542110 000 000 00 000 0134689999999999999999 7999
Q ss_pred eEEEEEEEEchHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHhhCCcCcccccC-CCeEEEcCceeEEEEEEeCCCe
Q 014822 221 TFRVGYTITTDALDALYKKIKS----K--GVTMTALLAKATALALVQHPVVNSSCRD-GNSFIYNSSINIAVAVAVDGGL 293 (418)
Q Consensus 221 ~~~~~~~vDvt~l~~~~~~~k~----~--~~s~~~~~~~Av~~Al~~~P~ln~~~~~-~~~i~~~~~i~i~~av~~~~gl 293 (418)
||+++.++|+|+|+++|+++++ . ++|||++|+||+++||++||+||++|++ ++.+++|++||+||||++++||
T Consensus 344 ~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl 423 (547)
T PRK11855 344 HVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGL 423 (547)
T ss_pred eEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCcc
Confidence 9999999999999999998874 1 6899999999999999999999999974 5689999999999999999999
Q ss_pred EEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEcc
Q 014822 294 ITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATK 373 (418)
Q Consensus 294 ~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~ 373 (418)
++|+|++++.+++.+|+++++++++++|+++|.++++.+|||+|||+||+|+++|+|++|+||++||++|++.++|++.
T Consensus 424 ~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~- 502 (547)
T PRK11855 424 VVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWD- 502 (547)
T ss_pred EeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 374 DGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 374 ~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+|.+.+|.+|+|||+||||+|||+|+++||+.|+++||+|+.|||
T Consensus 503 ~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 503 GKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred CCEEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 788999999999999999999999999999999999999998875
No 12
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.3e-79 Score=615.68 Aligned_cols=385 Identities=40% Similarity=0.614 Sum_probs=330.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|.+.+++.
T Consensus 7 mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~~--- 83 (404)
T COG0508 7 MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGADA--- 83 (404)
T ss_pred cCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCCcc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998766532
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
++.. .....+ ..+.++..+.+ .+... ..+..+||++|+||+|+|||++++.
T Consensus 84 --~a~~------~~~~~~-----~~~~~~~~~~~---------------~~~~~-~~~~~asP~~r~la~e~gidl~~v~ 134 (404)
T COG0508 84 --PAAA------EAPPEP-----AAAAPASAPAT---------------AASAA-AGRVLASPAVRRLAREAGIDLSKVK 134 (404)
T ss_pred --cccC------cccCCc-----cccCcCcccCc---------------ccccc-ccccccCcchhhhhhhcCCCHHHcC
Confidence 0000 000000 00000000000 00000 0367899999999999999999999
Q ss_pred cCCCCCccchhhHHHHHHhcC-CCccccc--CCC-CCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHHH
Q 014822 161 GSGPKGRIVAKDVEAEAAAAG-PAASVAA--AGP-AGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALDA 235 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~ 235 (418)
|||++|||+++|+++++.... +++.+.. +.+ ......+.+|++++||.|+++|..| .++||++.+.++|++.|.+
T Consensus 135 gtG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~ 214 (404)
T COG0508 135 GTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMA 214 (404)
T ss_pred CcCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHH
Confidence 999999999999999987541 1111111 001 1123467899999999999999999 8999999999999999999
Q ss_pred HHHHHhc------CCCCHHHHHHHHHHHHHhhCCcCcccccCCC-eEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHH
Q 014822 236 LYKKIKS------KGVTMTALLAKATALALVQHPVVNSSCRDGN-SFIYNSSINIAVAVAVDGGLITPVLQDADKADIYT 308 (418)
Q Consensus 236 ~~~~~k~------~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~-~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~ 308 (418)
+|++++. .+++|++|++||++.||+++|.+|+.++.++ .+++++++|+|++|++++||++|||++++++++.+
T Consensus 215 lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~ 294 (404)
T COG0508 215 LRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE 294 (404)
T ss_pred HHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence 9999885 2789999999999999999999997775322 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEe
Q 014822 309 LSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVT 388 (418)
Q Consensus 309 i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt 388 (418)
|.+++.++..++|+++|++++++||||+|||+|++|...|+||+|+||++||++|++.++|+|. +|++++|++|+|+|+
T Consensus 295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls 373 (404)
T COG0508 295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLS 373 (404)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999996 669999999999999
Q ss_pred ecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 389 ADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 389 ~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
||||++||+++++||.+++++||+|..|++
T Consensus 374 ~DHRviDGa~aa~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 374 YDHRVIDGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence 999999999999999999999999998875
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=5.9e-76 Score=591.16 Aligned_cols=358 Identities=25% Similarity=0.428 Sum_probs=297.8
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|++.+++.
T Consensus 96 mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~~~~--- 172 (463)
T PLN02226 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSEDAA--- 172 (463)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCCccc---
Confidence 79999999999999999999999999999999999999999999999999999999999999999999996433210
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
.. .. +....+. . ..+.+ .+ + .+... +.++.++|++|+.+ .
T Consensus 173 ~~----~~----~~~~~~~---~--~~~~~--~~-----~---------~~~~~-~~~v~asp~~r~~~----------~ 212 (463)
T PLN02226 173 SQ----VT----PSQKIPE---T--TDPKP--SP-----P---------AEDKQ-KPKVESAPVAEKPK----------A 212 (463)
T ss_pred cc----cC----ccCCCCC---C--CCCCC--CC-----c---------ccccc-ccCCCcchhhcccc----------C
Confidence 00 00 0000000 0 00000 00 0 00001 12467889887643 2
Q ss_pred cCCCCCccchhhHHHHHHhcCCCcccccCCCCCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHHHHHHH
Q 014822 161 GSGPKGRIVAKDVEAEAAAAGPAASVAAAGPAGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALDALYKK 239 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~~ 239 (418)
++|+.+.- .+...+ ...+....+.+|++++||.|+++|++| +++||||++.++|+|+|.++|++
T Consensus 213 ~~~~~~~~------------~~~~~~---~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~ 277 (463)
T PLN02226 213 PSSPPPPK------------QSAKEP---QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 277 (463)
T ss_pred CCCCCCCc------------ccccCc---ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHH
Confidence 33432210 000000 000011245689999999999999999 89999999999999999999999
Q ss_pred HhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHHH
Q 014822 240 IKSK-------GVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRK 312 (418)
Q Consensus 240 ~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~~ 312 (418)
+++. ++||++||+||+++||++||.||+.|+ ++.+++|+++|||+||++++||++|||++++++++.+|+++
T Consensus 278 l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~e 356 (463)
T PLN02226 278 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID-GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKT 356 (463)
T ss_pred HHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEc-CCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHH
Confidence 8741 699999999999999999999999996 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeeccc
Q 014822 313 WKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHR 392 (418)
Q Consensus 313 ~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHR 392 (418)
++++++++|+|+|+++|++||||||||+|++|+++|+||||+||++||++|++.++|++. ||++++|++|+|||+||||
T Consensus 357 i~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHR 435 (463)
T PLN02226 357 INGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVALTYDHR 435 (463)
T ss_pred HHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEeEecchh
Confidence 999999999999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCcccccC
Q 014822 393 VIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 393 viDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+|||+++++||++|+++||+|+.||+
T Consensus 436 VIDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 436 LIDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred hhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 99999999999999999999998865
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=7.8e-75 Score=579.76 Aligned_cols=360 Identities=26% Similarity=0.439 Sum_probs=292.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|++.+++..
T Consensus 49 ~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~-- 126 (418)
T PTZ00144 49 VPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPA-- 126 (418)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCcccc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999975433110
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCccccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVV 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~ 160 (418)
+. . + ++....+. . +.+.+ .. ...| .+......+..++|.+|+...
T Consensus 127 -~~--~-~---~~~~~~~~----~-~~~~~--~~--~~~p---------~~~~~a~~~~~a~p~vr~~~~---------- 171 (418)
T PTZ00144 127 -AA--P-A---AAAAAKAE----K-TTPEK--PK--AAAP---------TPEPPAASKPTPPAAAKPPEP---------- 171 (418)
T ss_pred -cc--c-c---ccCCCCCc----c-CCCCC--CC--CCCC---------ccccccccccCCchhhhcccc----------
Confidence 00 0 0 00000000 0 00000 00 0000 000000113456666654100
Q ss_pred cCCCCCccchhhHHHHHHhcCCCcccccCCCCCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHHHHHHH
Q 014822 161 GSGPKGRIVAKDVEAEAAAAGPAASVAAAGPAGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALDALYKK 239 (418)
Q Consensus 161 gtG~~Gri~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~~ 239 (418)
+ + .+++.+. ..+......+.+|++++||.|+++|++| .++||||++.++|+|+|.++|++
T Consensus 172 -~-~----------------~~~~~~~-~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~ 232 (418)
T PTZ00144 172 -A-P----------------AAKPPPT-PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKE 232 (418)
T ss_pred -C-C----------------CCCCCCC-CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHH
Confidence 0 0 0000000 0000011134589999999999999999 79999999999999999999999
Q ss_pred Hhc-------CCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHHH
Q 014822 240 IKS-------KGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRK 312 (418)
Q Consensus 240 ~k~-------~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~~ 312 (418)
+++ .++||++|++||+++||++||.||++|+ ++++++|+++|||+||++++||++|||++++++++.+|+++
T Consensus 233 ~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~e 311 (418)
T PTZ00144 233 YKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYID-GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKE 311 (418)
T ss_pred HHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEc-CCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHH
Confidence 884 1699999999999999999999999996 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeeccc
Q 014822 313 WKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHR 392 (418)
Q Consensus 313 ~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHR 392 (418)
++++++++|+|+|.++|++||||||||+|++|.++|+||||+||++||++|++.++|++. +|++++|++|+|||+||||
T Consensus 312 i~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHR 390 (418)
T PTZ00144 312 LADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALTYDHR 390 (418)
T ss_pred HHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEecchh
Confidence 999999999999999999999999999999999999999999999999999999999986 7999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCcccccC
Q 014822 393 VIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 393 viDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
++||+++|+||++|+++||+|+.||+
T Consensus 391 viDGa~AA~FL~~lk~~LE~P~~lll 416 (418)
T PTZ00144 391 LIDGRDAVTFLKKIKDLIEDPARMLL 416 (418)
T ss_pred hhChHHHHHHHHHHHHHhcCHHHHhh
Confidence 99999999999999999999998764
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.3e-73 Score=535.05 Aligned_cols=381 Identities=29% Similarity=0.451 Sum_probs=329.2
Q ss_pred CCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHHH
Q 014822 2 PALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEAQ 81 (418)
Q Consensus 2 P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~~ 81 (418)
-++|+++.|.++.+|+|||||+|.+-|.||||++||++++|.|.++|+|++|+-+.++...+|++|..++.++....
T Consensus 70 sdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds--- 146 (474)
T KOG0558|consen 70 SDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDS--- 146 (474)
T ss_pred hhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCC---
Confidence 46899999999999999999999999999999999999999999999999999999999999999999975432110
Q ss_pred hhhhcCCCCCCCCCCCCcccccccCCCCCCCCcccccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCcccccc
Q 014822 82 AKAAASGSPSSPASETSNSAAVVAAVPHPQPEKVKLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARVVG 161 (418)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v~g 161 (418)
++ ...++| .. +.+ ..+ ... .......++|++||||+|+||||+.|+|
T Consensus 147 ---~e------~s~es~----~v-s~~-----~~~-------------~~~-~~~~~tlaTPaVRrlA~e~~idla~v~g 193 (474)
T KOG0558|consen 147 ---PE------DSDESP----AV-SLG-----ESK-------------QGE-ESLLKTLATPAVRRLAKENGIDLAEVTG 193 (474)
T ss_pred ---cc------cCCccc----cc-cCC-----CCc-------------hhh-hhccccccCHHHHHHHHHhCCceEeeec
Confidence 00 000000 00 000 000 000 0112468999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHhcCCC---cccc----cCCC-------CCCCCceeccCCchhHHHHHHhhhcCCcceEEEEEE
Q 014822 162 SGPKGRIVAKDVEAEAAAAGPA---ASVA----AAGP-------AGIELASVVPFTTMQGAVSRNMVESLAVPTFRVGYT 227 (418)
Q Consensus 162 tG~~Gri~~~DV~~~~~~~~~~---~~~~----~~~~-------~~~~~~~~~~~s~~r~~ia~~m~~s~~iP~~~~~~~ 227 (418)
||++|||+|+||++|+.+.++. +++. ..++ ........+|+.+++|+|.+.|+.+..||||.++.|
T Consensus 194 tGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dE 273 (474)
T KOG0558|consen 194 TGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDE 273 (474)
T ss_pred cCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccccccc
Confidence 9999999999999999876421 1110 0001 112235788999999999999999999999999999
Q ss_pred EEchHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCCcCcccccCC-CeEEEcCceeEEEEEEeCCCeEEeEEeC
Q 014822 228 ITTDALDALYKKIKSK------GVTMTALLAKATALALVQHPVVNSSCRDG-NSFIYNSSINIAVAVAVDGGLITPVLQD 300 (418)
Q Consensus 228 vDvt~l~~~~~~~k~~------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~ 300 (418)
||+|.|.+||+++|.. ++||++||+||++.||.++|.+|+.++.+ ..+++..+.|||+|++++.||++|.|+|
T Consensus 274 In~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN 353 (474)
T KOG0558|consen 274 INCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKN 353 (474)
T ss_pred cChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccc
Confidence 9999999999999863 78999999999999999999999999654 6788999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEE
Q 014822 301 ADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMK 380 (418)
Q Consensus 301 ~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r 380 (418)
++.+++.||+++++++.+..+.|+|+++|+.+|||++||+|.+|.++..|++++|+++|.++|+|...|-+++.|++...
T Consensus 354 ~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a 433 (474)
T KOG0558|consen 354 VQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPA 433 (474)
T ss_pred cchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 381 NQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 381 ~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
.+|.|+++.||||+||+..|||-+.+++|||+|+.|||
T Consensus 434 ~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll 471 (474)
T KOG0558|consen 434 SIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLL 471 (474)
T ss_pred EEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhh
Confidence 99999999999999999999999999999999998875
No 16
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=6.7e-68 Score=521.83 Aligned_cols=280 Identities=33% Similarity=0.521 Sum_probs=252.9
Q ss_pred ccccChhHHHHHHHcCCCccccccCCCCCccchhhHHHHHHhcC--CCcc-cccC--C-CCC-----CCCceeccCCchh
Q 014822 138 RIVASPYAKKLANELKVELARVVGSGPKGRIVAKDVEAEAAAAG--PAAS-VAAA--G-PAG-----IELASVVPFTTMQ 206 (418)
Q Consensus 138 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~~~~~~~--~~~~-~~~~--~-~~~-----~~~~~~~~~s~~r 206 (418)
++++||+||+||+|+||||++|+|||++|||+++||++|+.... +... +... . ..+ ....+.+|++++|
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r 127 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMR 127 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcHHH
Confidence 56799999999999999999999999999999999999975421 1000 0000 0 000 0113568999999
Q ss_pred HHHHHHhhhc-CCcceEEEEEEEEchHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhhCCcCcccccCC-CeEEE
Q 014822 207 GAVSRNMVES-LAVPTFRVGYTITTDALDALYKKIKS-------KGVTMTALLAKATALALVQHPVVNSSCRDG-NSFIY 277 (418)
Q Consensus 207 ~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~~~k~-------~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~-~~i~~ 277 (418)
|.|+++|++| +++||||++.++|+|+|+++|+++++ .++||++||+||++.||++||.||++|+++ +.+++
T Consensus 128 ~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~ 207 (347)
T PRK14843 128 KVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIIT 207 (347)
T ss_pred HHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEE
Confidence 9999999999 89999999999999999999998863 169999999999999999999999999743 56999
Q ss_pred cCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCc
Q 014822 278 NSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTG 357 (418)
Q Consensus 278 ~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~ 357 (418)
|+++|||+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|++||||||||+|++|+++|+|||||||+
T Consensus 208 ~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~ 287 (347)
T PRK14843 208 HNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNS 287 (347)
T ss_pred ecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccceeEEEEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 358 AIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 358 ~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+||++|++.++|++. ||++++|++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus 288 aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 288 AILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred EEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 999999999999997 799999999999999999999999999999999999999998874
No 17
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=9.9e-68 Score=512.34 Aligned_cols=278 Identities=29% Similarity=0.455 Sum_probs=250.8
Q ss_pred cccChhHHHHHHHcCCCccccccCCCCCccchhhHHHHHHhcC--CCcc-----ccc--CC----CC---CCCCceeccC
Q 014822 139 IVASPYAKKLANELKVELARVVGSGPKGRIVAKDVEAEAAAAG--PAAS-----VAA--AG----PA---GIELASVVPF 202 (418)
Q Consensus 139 ~~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~~~~~~~--~~~~-----~~~--~~----~~---~~~~~~~~~~ 202 (418)
+++||+||+||+|+||||++|+|||++|||+++||++|+.+.. +++. +.+ .+ +. +....+.+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 5789999999999999999999999999999999999975321 0100 000 00 00 0111356899
Q ss_pred CchhHHHHHHhhhc-CCcceEEEEEEEEchHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccC-CC
Q 014822 203 TTMQGAVSRNMVES-LAVPTFRVGYTITTDALDALYKKIKSK-------GVTMTALLAKATALALVQHPVVNSSCRD-GN 273 (418)
Q Consensus 203 s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~-~~ 273 (418)
+++|+.|+++|++| .++|||+++.++|+|+|+++|+++++. ++||++|++||+++||.+||.||++|++ ++
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999 799999999999999999999998741 6999999999999999999999999974 35
Q ss_pred eEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCC
Q 014822 274 SFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILP 353 (418)
Q Consensus 274 ~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~ 353 (418)
.+++|+++|||+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|++||||||||+|++|..+|+||||
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn 241 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVIN 241 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCccccc
Q 014822 354 PGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLT 417 (418)
Q Consensus 354 ~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll 417 (418)
+||++||++|++.++|++. ||++++|++|+|||+||||++||+++++||++|+++||+|+.|+
T Consensus 242 ~pq~aILgvG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~ 304 (306)
T PRK11857 242 YPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILG 304 (306)
T ss_pred CCccceeecccceEEeEEE-CCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence 9999999999999999995 89999999999999999999999999999999999999999765
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=4.4e-67 Score=493.48 Aligned_cols=370 Identities=26% Similarity=0.432 Sum_probs=290.4
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChhhHHHH
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDEIAEA 80 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~~~~~ 80 (418)
.|.++++++||+|.+|++++||.|++++.||+|||||.+++|.||.+|+|.++++++||+|..|+.|+.|.......+.
T Consensus 77 vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaApa~~- 155 (457)
T KOG0559|consen 77 VPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAAPAKG- 155 (457)
T ss_pred cCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCCCccc-
Confidence 4889999999999999999999999999999999999999999999999999999999999999999999764221111
Q ss_pred HhhhhcCCCCCCCCCCCCcccccccCCCCCCCCcc-cccCccccccCCccCCCCCCCCccccChhHHHHHHHcCCCcccc
Q 014822 81 QAKAAASGSPSSPASETSNSAAVVAAVPHPQPEKV-KLAEPAAVTVGSAVHPASEGGKRIVASPYAKKLANELKVELARV 159 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidl~~v 159 (418)
.+++|++++|..++...+.|++.+.+. ..+.+.+ .+.+.|. ......++ +.+.-+.+-++
T Consensus 156 --------~~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~---e~p~~p~--~~~P~~~~-a~k~~v~~~~~----- 216 (457)
T KOG0559|consen 156 --------GASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVA---ESPPAPS--SPEPVPAS-AKKPSVAQPKP----- 216 (457)
T ss_pred --------cccCCCccCCCCCCCCCCCCCccCCCCccccCCCC---CCCCCCC--CCCCCCcc-ccCccccCCCC-----
Confidence 011111111111111111111100000 0000000 0000110 00000000 00000000000
Q ss_pred ccCCCCCccchhhHHHHHHhcCCCcccccCCCCCCCCceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHHHHHH
Q 014822 160 VGSGPKGRIVAKDVEAEAAAAGPAASVAAAGPAGIELASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALDALYK 238 (418)
Q Consensus 160 ~gtG~~Gri~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~ 238 (418)
+++....+.....++++++||++||.+|.+| .+-...+.+.|||+++|+++|+
T Consensus 217 --------------------------~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk 270 (457)
T KOG0559|consen 217 --------------------------PPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRK 270 (457)
T ss_pred --------------------------CcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 0000001122357899999999999999999 6777888899999999999999
Q ss_pred HHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHH
Q 014822 239 KIKSK-------GVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSR 311 (418)
Q Consensus 239 ~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~ 311 (418)
++|+. ++.|+.+|+||++.||++.|..|+.|+ |+.|+|+|++|||+||.++.||++|||+|++.++|.||-.
T Consensus 271 ~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId-g~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~ 349 (457)
T KOG0559|consen 271 QYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID-GDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEK 349 (457)
T ss_pred HHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec-CCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHH
Confidence 98863 678899999999999999999999995 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeecc
Q 014822 312 KWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADH 391 (418)
Q Consensus 312 ~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DH 391 (418)
++..|..++|+|+|..+|+.||||||||-|.||..+.||||||||++||++..|.++|++. +|++++|++|.|.|||||
T Consensus 350 ~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~Vv~RPMMYvALTYDH 428 (457)
T KOG0559|consen 350 TIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQVVPRPMMYVALTYDH 428 (457)
T ss_pred HHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEeeeccceEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999986 899999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhcCcccccC
Q 014822 392 RVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 392 RviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
|++||.++.-||+.+++.+|||..|||
T Consensus 429 RliDGREAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559|consen 429 RLIDGREAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred cccccHHHHHHHHHHHHHhhCHHHHhh
Confidence 999999999999999999999999886
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=1.3e-56 Score=420.28 Aligned_cols=222 Identities=38% Similarity=0.643 Sum_probs=197.8
Q ss_pred CceeccCCchhHHHHHHhhhc-CCcceEEEEEEEEchHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhhCCcCccc
Q 014822 196 LASVVPFTTMQGAVSRNMVES-LAVPTFRVGYTITTDALDALYKKIKSK------GVTMTALLAKATALALVQHPVVNSS 268 (418)
Q Consensus 196 ~~~~~~~s~~r~~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~~~~k~~------~~s~~~~~~~Av~~Al~~~P~ln~~ 268 (418)
..+.+|++++||+|+++|.+| +++||||++.++|+|+|+++++++++. ++|+++|++||+++||.+||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 357899999999999999999 599999999999999999999998752 8999999999999999999999999
Q ss_pred ccCCCeEEEcCceeEEEEEEeCCCeEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecCCCCCCCe
Q 014822 269 CRDGNSFIYNSSINIAVAVAVDGGLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLGMFGVDRF 348 (418)
Q Consensus 269 ~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg~~g~~~~ 348 (418)
|++++++++|+++|+|+||++++||++|||++++++++.||+++++++.+++|+|+|.++|++||||+|||+|++|+++|
T Consensus 83 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~ 162 (231)
T PF00198_consen 83 WDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESF 162 (231)
T ss_dssp EETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCE
T ss_pred cccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCccee
Confidence 97544599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccccC
Q 014822 349 DAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDLTF 418 (418)
Q Consensus 349 ~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 418 (418)
+||+||||++||++|++.++|++ .+|+++++++|+|||+||||++||+++++||++|+++||+|+.|||
T Consensus 163 ~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 163 TPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp E----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred EccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 99999999999999999999999 5899999999999999999999999999999999999999999987
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.5e-44 Score=378.38 Aligned_cols=216 Identities=26% Similarity=0.398 Sum_probs=203.2
Q ss_pred ceeccCCchhHHHHHHhhhcCCcceEEEEEEEEchHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCCcCcccc
Q 014822 197 ASVVPFTTMQGAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSK-------GVTMTALLAKATALALVQHPVVNSSC 269 (418)
Q Consensus 197 ~~~~~~s~~r~~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~~~~k~~-------~~s~~~~~~~Av~~Al~~~P~ln~~~ 269 (418)
.+.+||++++++|+++|..|+++|+++...+|+++.|.++|+.+|++ |+||+++++||+++||++||.+|++|
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 46789999999999999999999999999999999999999998742 79999999999999999999999999
Q ss_pred cC-CC--eEEEcCceeEEEEEEeC-----CCeEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCeEEEeecC
Q 014822 270 RD-GN--SFIYNSSINIAVAVAVD-----GGLITPVLQDADKADIYTLSRKWKELVDKARAKLLQPHEYNTGTFTLSNLG 341 (418)
Q Consensus 270 ~~-~~--~i~~~~~i~i~~av~~~-----~gl~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~l~~~~~~~~t~~iSnlg 341 (418)
.+ ++ .++++++||+|+||+++ +||++|+|+++++++|.+|.+++++++.++|+|+|+++|++||||+|||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 73 33 49999999999999997 579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEecCCCCCceEEEeccceeEEEEc-----cCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 342 MFGVDRFDAILPPGTGAIMAVGASEPTVVAT-----KDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 342 ~~g~~~~~pii~~p~~~il~iG~~~~~~v~~-----~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
++|..+|+|++|+||++||++|++...+++. ..+++.++++|+||+|||||+|||+++++||+.|+++|+-
T Consensus 275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLeG 350 (1228)
T PRK12270 275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLG 350 (1228)
T ss_pred cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888773 2468999999999999999999999999999999999983
No 21
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=100.00 E-value=1.7e-32 Score=252.12 Aligned_cols=184 Identities=16% Similarity=0.214 Sum_probs=146.0
Q ss_pred HhhhcCCcceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCC
Q 014822 212 NMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDG 291 (418)
Q Consensus 212 ~m~~s~~iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~ 291 (418)
..-++...|+|++|++||||+| ++.+|++|++|+++++|++++|+|++|+||+|+.++|++++||.|+++++|.+++
T Consensus 18 ~~f~~~~~p~~svT~~lDvT~l---~~~~K~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~ 94 (206)
T PF00302_consen 18 EFFRNFDNPYFSVTVNLDVTNL---YKYAKEKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKD 94 (206)
T ss_dssp HHHTTTSBEEEEEEEEEE-HHH---HHHHHHTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETT
T ss_pred HHHhcCCCceEecceeEEhHHH---HHHHHHcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCC
Confidence 3344567899999999999999 5556777999999999999999999999999998666999999999999999876
Q ss_pred CeEEeEEeCCCCCCHHHHHHHHHHHHHHHHhCC-CCCCC-CCCCeEEEeecCCCCCCCeE-ecCCCCC--ceEEEeccce
Q 014822 292 GLITPVLQDADKADIYTLSRKWKELVDKARAKL-LQPHE-YNTGTFTLSNLGMFGVDRFD-AILPPGT--GAIMAVGASE 366 (418)
Q Consensus 292 gl~~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~-l~~~~-~~~~t~~iSnlg~~g~~~~~-pii~~p~--~~il~iG~~~ 366 (418)
+..+..++..+..++.+|.+...+.++++++.+ +.++. ...+.|.+||+||+.+++++ ++...+. .|+++|||+.
T Consensus 95 ~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~ 174 (206)
T PF00302_consen 95 DETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYF 174 (206)
T ss_dssp TTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--E
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeE
Confidence 657778899999999999999999998887654 55554 45689999999999999987 4444433 4899999999
Q ss_pred eEEEEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHH
Q 014822 367 PTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLA 407 (418)
Q Consensus 367 ~~~v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~ 407 (418)
++ +| |.+||||+++||++|||+|+|+|+++||
T Consensus 175 ~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 175 EE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp EE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eE-----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 86 78 7899999999999999999999999997
No 22
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=254.25 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=158.6
Q ss_pred cceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeEE
Q 014822 219 VPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPVL 298 (418)
Q Consensus 219 iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi 298 (418)
-|.|++|++||||+| ++.+|++|++|++.++||+++|+|++|+||+++. ++++++||.|+++++|..+++..+..+
T Consensus 30 ~~~fsiT~~iDiT~l---~~~~K~~~~~fy~~~ly~v~kavN~~~eFR~r~~-~~~v~~~D~i~ps~Ti~~~~~~tFs~~ 105 (219)
T PRK13757 30 QCTYNQTVQLDITAF---LKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIWDSVHPCYTVFHEQTETFSSL 105 (219)
T ss_pred CCceEEEEEEEHHHH---HHHHHHcCCChHHHHHHHHHHHHhcCHhHheEEE-CCeEEEEeEEeeeEEEEeCCCceEEEE
Confidence 344999999999999 5556777999999999999999999999999995 579999999999999998887677889
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEEeecCCCCCCCeE-ecCCCC--CceEEEeccceeEEEEccC
Q 014822 299 QDADKADIYTLSRKWKELVDKARAKL-LQPHEYNTGTFTLSNLGMFGVDRFD-AILPPG--TGAIMAVGASEPTVVATKD 374 (418)
Q Consensus 299 ~~~~~~~l~~i~~~~~~~~~~a~~~~-l~~~~~~~~t~~iSnlg~~g~~~~~-pii~~p--~~~il~iG~~~~~~v~~~~ 374 (418)
+..+..++.+|.+.....++++++.+ +.++....+.|.||++||+.+++++ ++.+.. ..|+++|||+.++ +
T Consensus 106 ~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~-----~ 180 (219)
T PRK13757 106 WSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ-----G 180 (219)
T ss_pred EecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE-----C
Confidence 99999999999999888888887754 6555556789999999999999987 444333 2489999999875 7
Q ss_pred CeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 375 GRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 375 g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
| |.+||||+++||++|||+|+|+|++.||++|++
T Consensus 181 g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 181 D----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred C----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999999976
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.95 E-value=3.4e-27 Score=208.44 Aligned_cols=189 Identities=15% Similarity=0.220 Sum_probs=164.4
Q ss_pred hcCCcceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeE
Q 014822 215 ESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLI 294 (418)
Q Consensus 215 ~s~~iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~ 294 (418)
++...||+.++.++|+|++ +..+|++|++|+++++||+++++|+++|||.|+. ++++++||.+++.++|.++++.+
T Consensus 24 R~~~~p~y~i~~~LDvtn~---~~~vk~~~l~Ff~a~l~avtr~~n~~~EFRlr~~-~~~~~~~d~v~p~~tv~~~~~e~ 99 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNF---YGYVKENGLSFFPALLYAVTRCANRHQEFRLRIQ-NGQLGYWDNVPPMYTVFHGETET 99 (219)
T ss_pred hhcccceEeeeeeeehhHH---HHHHHHcCCcchHHHHHHHHHHhcccHHhHhhhc-CCeeEEeecCCcceEEEcCCCcE
Confidence 5678999999999999999 5556666999999999999999999999999996 57999999999999999999888
Q ss_pred EeEEeCCCCCCHHHHHHHHHHHHHHHHhCC-CCCCCC-CCCeEEEeecCCCCCCCeEecCCCCC---ceEEEeccceeEE
Q 014822 295 TPVLQDADKADIYTLSRKWKELVDKARAKL-LQPHEY-NTGTFTLSNLGMFGVDRFDAILPPGT---GAIMAVGASEPTV 369 (418)
Q Consensus 295 ~pvi~~~~~~~l~~i~~~~~~~~~~a~~~~-l~~~~~-~~~t~~iSnlg~~g~~~~~pii~~p~---~~il~iG~~~~~~ 369 (418)
+.+++-....++.+|++....-+++.+++. ..+++. ....+.+||+||+.+++++.-++... .+++.+|+..++
T Consensus 100 Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~~~- 178 (219)
T COG4845 100 FSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFYEE- 178 (219)
T ss_pred EEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecceecc-
Confidence 899999999999999998888788887765 444333 35678889999998888776555332 389999999986
Q ss_pred EEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcCcccc
Q 014822 370 VATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIEDPRDL 416 (418)
Q Consensus 370 v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~l 416 (418)
||++ .|||++++||+.+||+|+++|+..||+++++|-.+
T Consensus 179 ----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 179 ----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred ----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 9954 69999999999999999999999999999998765
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=4.8e-18 Score=131.28 Aligned_cols=70 Identities=37% Similarity=0.706 Sum_probs=68.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
||.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 5 ~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 5 APMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp ESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999986
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.70 E-value=4.6e-17 Score=162.88 Aligned_cols=72 Identities=38% Similarity=0.640 Sum_probs=70.8
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+.+
T Consensus 7 ~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 7 MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred CCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999999999964
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.68 E-value=2.3e-16 Score=123.05 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=61.0
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEe-cceeeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVES-DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet-~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
.|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++|+.|++|++|+.|.+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 59999999999999999999999999 9999999999999999999999999999999999964
No 27
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.57 E-value=1.1e-14 Score=111.54 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-.|+|.+|++++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.+..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999873
No 28
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.53 E-value=6.8e-14 Score=107.66 Aligned_cols=70 Identities=30% Similarity=0.569 Sum_probs=67.9
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
||+++.++.+|++.+|++++||.|++||+|+++|++|+.++|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 4 ~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 4 IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 29
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.50 E-value=8.8e-14 Score=142.70 Aligned_cols=76 Identities=45% Similarity=0.746 Sum_probs=72.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCC-ccccCceeEEeccChhh
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGG-VASVGSAIALLAESEDE 76 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~-~v~~g~~l~~i~~~~~~ 76 (418)
||+||++|+||+|.+|+|++||.|++||.|++|||||++++|+||.+|+|.++++++|+ .|++|++|+.|.+++++
T Consensus 7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~~ 83 (464)
T PRK11892 7 MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGES 83 (464)
T ss_pred cCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCCc
Confidence 79999999999999999999999999999999999999999999999999999999996 79999999999765543
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.50 E-value=5e-14 Score=122.10 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-|++.+.+|++||+|++||.||+||+||+.++|+||.+|+|.+|++++||.|..||+|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 31
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.48 E-value=1.8e-13 Score=104.57 Aligned_cols=63 Identities=27% Similarity=0.401 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-.|+|.+|++++||+|++||+|++||+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 32
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.41 E-value=2.1e-13 Score=90.91 Aligned_cols=38 Identities=58% Similarity=0.851 Sum_probs=34.2
Q ss_pred ccccChhHHHHHHHcCCCccccccCCCCCccchhhHHH
Q 014822 138 RIVASPYAKKLANELKVELARVVGSGPKGRIVAKDVEA 175 (418)
Q Consensus 138 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~ 175 (418)
++.+||+||+||+|+|||+++|.|||+.|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 56899999999999999999999999999999999985
No 33
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.39 E-value=8.9e-13 Score=140.94 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=69.2
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
||+|| |+||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|.+|++|+.|.++
T Consensus 7 ~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 7 VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 79999 999999999999999999999999999999999999999999999999999999999999999764
No 34
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.39 E-value=1.4e-12 Score=110.71 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=60.3
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999987
No 35
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.36 E-value=1.8e-12 Score=137.20 Aligned_cols=73 Identities=33% Similarity=0.637 Sum_probs=71.0
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
||+||++|++|+|++|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++|+.|++|++|+.|...
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 7 MPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999653
No 36
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.34 E-value=3.7e-12 Score=111.51 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=60.3
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
..|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999987
No 37
>PRK07051 hypothetical protein; Validated
Probab=99.31 E-value=1e-11 Score=97.35 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=60.3
Q ss_pred ceEEEEE-------EEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVS-------WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
..|++.+ |++++||.|++||+|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.+.
T Consensus 10 ~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 10 LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 3588888 99999999999999999999999999999999999999999999999999999984
No 38
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.29 E-value=1.8e-11 Score=91.95 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=59.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
.+|+|.+|++++||.|++||.|++++++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999875
No 39
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.27 E-value=1.2e-11 Score=115.18 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=59.7
Q ss_pred eEEEEE-------EEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVS-------WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 488888 99999999999999999999999999999999999999999999999999999984
No 40
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.25 E-value=1.8e-11 Score=129.07 Aligned_cols=73 Identities=29% Similarity=0.562 Sum_probs=70.3
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|.+|++|+.|.+..
T Consensus 7 ~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 7 VPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred cCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 699999 9999999999999999999999999999999999999999999999999999999999999997543
No 41
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.25 E-value=1.9e-11 Score=107.89 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=58.8
Q ss_pred eEEEEE-------EEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVS-------WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+.|..|++|+.|.
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 377776 99999999999999999999999999999999999999999999999999999873
No 42
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.22 E-value=3.5e-11 Score=126.53 Aligned_cols=72 Identities=33% Similarity=0.549 Sum_probs=69.3
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
||+||.. .+|+|++|+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|.+|++|+.|...
T Consensus 5 ~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 5 VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred cCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 7999987 99999999999999999999999999999999999999999999999999999999999999643
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.19 E-value=5.3e-11 Score=104.96 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=58.0
Q ss_pred EEEEE-------EEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 11 GKIVS-------WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 11 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
|++.. |+|++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|.
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 66766 99999999999999999999999999999999999999999999999999999873
No 44
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.16 E-value=8.4e-11 Score=123.65 Aligned_cols=63 Identities=24% Similarity=0.447 Sum_probs=61.1
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999999953
No 45
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.15 E-value=4.2e-10 Score=84.88 Aligned_cols=70 Identities=47% Similarity=0.782 Sum_probs=67.6
Q ss_pred CCCCCCCCceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 1 MPALSSTMTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 1 ~P~l~~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+|+++....+|+|..|+++.|+.|..|++++.++++|+...+.++.+|++.+.++.+|+.+..|++|+.+
T Consensus 5 ~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 5 MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999875
No 46
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.04 E-value=4.7e-10 Score=127.40 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=60.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 359999999999999999999999999999999999999999999999999999999999874
No 47
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.01 E-value=6e-10 Score=117.59 Aligned_cols=59 Identities=29% Similarity=0.504 Sum_probs=57.0
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCcee
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAI 67 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l 67 (418)
-.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 36999999999999999999999999999999999999999999999999999999976
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.98 E-value=1.2e-09 Score=115.43 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 68999999999999999999999999999999999999999999999999999999999873
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.95 E-value=1.6e-09 Score=122.06 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=60.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 359999999999999999999999999999999999999999999999999999999999873
No 50
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.88 E-value=4.4e-09 Score=111.43 Aligned_cols=63 Identities=29% Similarity=0.484 Sum_probs=61.0
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|.
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 368999999999999999999999999999999999999999999999999999999999985
No 51
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.86 E-value=4.4e-09 Score=106.85 Aligned_cols=62 Identities=31% Similarity=0.486 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|+|+.+.|++|++|.+||+|+.+|.|||+..|+||.+|+|.++.+.+|+.|..|++|+++.
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999985
No 52
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.77 E-value=1.5e-08 Score=114.61 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 59999999999999999999999999999999999999999999999999999999999985
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.65 E-value=3.3e-08 Score=103.73 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=60.1
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-|.|+++.|++||.|++||+|+.+|.|||+..|.||.+|+|.+++|..|+.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 48999999999999999999999999999999999999999999999999999999999875
No 54
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.47 E-value=2.4e-07 Score=95.61 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|+|+++.|++|+.|++||+||.+..|||++-|.||.+|+|+++++..|+.+..|+.+++++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 48999999999999999999999999999999999999999999999999999999999885
No 55
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.32 E-value=1.2e-06 Score=71.11 Aligned_cols=51 Identities=25% Similarity=0.177 Sum_probs=44.1
Q ss_pred eEEEEE-EEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCc
Q 014822 10 EGKIVS-WVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV 60 (418)
Q Consensus 10 ~g~i~~-w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~ 60 (418)
-|+|.. |++++|+.|++||.|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 28 lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 28 LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 367777 566779999999999999999999999999999999887665543
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.14 E-value=1.8e-06 Score=86.92 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=59.4
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
-|.|.+++||+||.|++||.|+.++.|||...++||.+|+|..+.++.|+++.-|.+|.+++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 37899999999999999999999999999999999999999999999999999999998863
No 57
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.13 E-value=4.3e-06 Score=69.23 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=40.0
Q ss_pred EEEEEEEc-CCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 014822 11 GKIVSWVR-SEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDE 57 (418)
Q Consensus 11 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~ 57 (418)
|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.+++-..
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 55666643 679999999999999999999999999999999875433
No 58
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.01 E-value=1.4e-05 Score=66.60 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=38.7
Q ss_pred EEEEEEEc-CCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 11 GKIVSWVR-SEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 11 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 55666644 669999999999999999999999999999998874
No 59
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.93 E-value=3.1e-05 Score=79.18 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=58.0
Q ss_pred ceEEEEEEE-cCCCCeeecCCeEEEEEec------------------------------------------------cee
Q 014822 9 TEGKIVSWV-RSEGDKLCKGESVVVVESD------------------------------------------------KAD 39 (418)
Q Consensus 9 ~~g~i~~w~-v~~Gd~V~~g~~l~~vet~------------------------------------------------K~~ 39 (418)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999998 9999999999999999831 013
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|+||++|+|.+..+.+|+.|..|++|+.|.+..
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 57999999999999999999999999999997654
No 60
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.93 E-value=1.6e-05 Score=69.15 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=43.9
Q ss_pred eEEEEEEEcC-CCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCC
Q 014822 10 EGKIVSWVRS-EGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGG 59 (418)
Q Consensus 10 ~g~i~~w~v~-~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~ 59 (418)
-|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++.....+
T Consensus 43 lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 43 AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 3678888776 8999999999999999999999999999999987755433
No 61
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.92 E-value=1.7e-05 Score=88.22 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=61.9
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
-+.|++++|+|+.|++|.+||+-+|||.|||.|.+.|+.+|+| +...++|+.+..|++|+.+..+.
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 4679999999999999999999999999999999999999998 67999999999999999997544
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.87 E-value=3.3e-05 Score=76.64 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|+||++|+|..+.+.+|+.|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 46999999999999999999999999999997653
No 63
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.86 E-value=4e-05 Score=65.32 Aligned_cols=64 Identities=28% Similarity=0.302 Sum_probs=50.0
Q ss_pred EEEEEEE-cCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE---ecCCCccc---cCc-eeEEeccCh
Q 014822 11 GKIVSWV-RSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM---VDEGGVAS---VGS-AIALLAESE 74 (418)
Q Consensus 11 g~i~~w~-v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~---~~~g~~v~---~g~-~l~~i~~~~ 74 (418)
|.|+.+. .++|++|++||+++.||++|+..+|.||.+|+|.++. ....+.+. -|+ -|+.|...+
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 4555553 4679999999999999999999999999999999994 44444443 454 888887543
No 64
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.83 E-value=4e-05 Score=75.51 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecc---------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDK--------------------------------------------------- 37 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (418)
..|+|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999998731
Q ss_pred -------------------eeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 38 -------------------ADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 38 -------------------~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
-...|+||++|+|.++.+++|+.|..|++|+.|.+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024699999999999999999999999999988654
No 65
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.76 E-value=4e-05 Score=75.28 Aligned_cols=65 Identities=23% Similarity=0.451 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecce--------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKA-------------------------------------------------- 38 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~-------------------------------------------------- 38 (418)
.+|+|.+++|++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999975311
Q ss_pred ---------------------eeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 39 ---------------------DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 39 ---------------------~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
...|+||.+|+|..+.+.+|+.+..|++|+.|.+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 34699999999999999999999999999999754
No 66
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.75 E-value=6.2e-05 Score=75.26 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=31.9
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|+||++|+|.++.+.+|+.|..|++|+.|.+.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 46999999999999999999999999999997653
No 67
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.61 E-value=4e-05 Score=76.36 Aligned_cols=42 Identities=40% Similarity=0.654 Sum_probs=38.9
Q ss_pred ccccChhHHHHHHHcCCCccccccCCCCCccchhhHHHHHHh
Q 014822 138 RIVASPYAKKLANELKVELARVVGSGPKGRIVAKDVEAEAAA 179 (418)
Q Consensus 138 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~~~~~ 179 (418)
+.++||.+|++|+++|||++.|+|||+.|||+++||++|...
T Consensus 5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 456899999999999999999999999999999999999764
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.60 E-value=0.00013 Score=74.16 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=32.0
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|+||++|+|..+.+++|+.|..|++|+.|.+..
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 47999999999999999999999999999997653
No 69
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.58 E-value=8.4e-05 Score=63.35 Aligned_cols=48 Identities=29% Similarity=0.271 Sum_probs=40.0
Q ss_pred EEEEEE-EcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 014822 11 GKIVSW-VRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEG 58 (418)
Q Consensus 11 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g 58 (418)
|.|..+ +.++|++|++||+++.||++|+..+|.||.+|+|.++.-..-
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~ 84 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE 84 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence 445555 336799999999999999999999999999999998764443
No 70
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.56 E-value=0.00015 Score=72.09 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.5
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
..|+||++|+|..+.+.+|+.|..|++|+.|.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 5799999999999999999999999999999654
No 71
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.54 E-value=0.00016 Score=73.30 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=55.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecce--------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKA-------------------------------------------------- 38 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~-------------------------------------------------- 38 (418)
..|+|.++++++||.|++||+|+.|++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 569999999999999999999999986310
Q ss_pred ---------------------eeEEecCCCeEEEEEEecCCCccccC--ceeEEeccC
Q 014822 39 ---------------------DMDVETFYDGYLAKIMVDEGGVASVG--SAIALLAES 73 (418)
Q Consensus 39 ---------------------~~~i~a~~~G~v~~~~~~~g~~v~~g--~~l~~i~~~ 73 (418)
...|+||++|+|.+.++++|+.|..| ++|+.|...
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 24699999999999999999999885 588888643
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.52 E-value=0.00022 Score=50.49 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=32.7
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+..|.+|.+|+|.++++++|+.|+.|++|+.+.....
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 4678999999999999999999999999999976544
No 73
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.51 E-value=0.00021 Score=72.90 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=54.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecce--------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKA-------------------------------------------------- 38 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~-------------------------------------------------- 38 (418)
..|+|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999985210
Q ss_pred ---------------------eeEEecCCCeEEEEEEecCCCccccCce--eEEecc
Q 014822 39 ---------------------DMDVETFYDGYLAKIMVDEGGVASVGSA--IALLAE 72 (418)
Q Consensus 39 ---------------------~~~i~a~~~G~v~~~~~~~g~~v~~g~~--l~~i~~ 72 (418)
...|+||++|+|.+.++++|+.|..|++ |+.|.+
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 2459999999999999999999999985 666644
No 74
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.42 E-value=0.0003 Score=71.38 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=55.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecc---------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDK--------------------------------------------------- 37 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (418)
..|+|.++++++||.|++||+|++|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998530
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCccccCc--eeEEeccC
Q 014822 38 --------------------ADMDVETFYDGYLAKIMVDEGGVASVGS--AIALLAES 73 (418)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~v~~g~--~l~~i~~~ 73 (418)
....|+||++|+|.+.++..|+.|..|+ +|+.|.+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 1247999999999999999999999985 68877543
No 75
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.38 E-value=0.00019 Score=50.73 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=27.1
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecce
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKA 38 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~ 38 (418)
..|+|.+|+|++||.|++||+|+++++...
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 479999999999999999999999987643
No 76
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.29 E-value=0.00045 Score=70.83 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=54.6
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecc---------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDK--------------------------------------------------- 37 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (418)
..|+|.++++++||.|++||+|++|....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 57999999999999999999999996521
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCccccCc--eeEEecc
Q 014822 38 --------------------ADMDVETFYDGYLAKIMVDEGGVASVGS--AIALLAE 72 (418)
Q Consensus 38 --------------------~~~~i~a~~~G~v~~~~~~~g~~v~~g~--~l~~i~~ 72 (418)
-...|+||++|+|..+.++.|+.|..|+ +|+.|.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 0236999999999999999999999984 6777754
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.29 E-value=0.00056 Score=57.93 Aligned_cols=44 Identities=32% Similarity=0.399 Sum_probs=34.6
Q ss_pred EEEEEE-EcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 11 GKIVSW-VRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 11 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
|.|+.+ +.++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 556666 45669999999999999999999999999999998864
No 78
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.25 E-value=0.00069 Score=68.36 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=54.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecc---------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDK--------------------------------------------------- 37 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K--------------------------------------------------- 37 (418)
..|.|.++++++||.|++||+|++++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 46999999999999999999999998631
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEEecCCCccccC---ceeEEeccC
Q 014822 38 ----------------------------------ADMDVETFYDGYLAKIMVDEGGVASVG---SAIALLAES 73 (418)
Q Consensus 38 ----------------------------------~~~~i~a~~~G~v~~~~~~~g~~v~~g---~~l~~i~~~ 73 (418)
....|+||++|+|..+.+..|+.|..| ++|+.|.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 220 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence 013799999999999999999999765 478887554
No 79
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00055 Score=57.86 Aligned_cols=44 Identities=36% Similarity=0.394 Sum_probs=39.7
Q ss_pred EEEEEE-EcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 11 GKIVSW-VRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 11 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
|.|+-+ +.+.|++|++|+.++.||+-|+..+|.||.+|.|..+.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 667776 67889999999999999999999999999999998764
No 80
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.09 E-value=0.00046 Score=67.92 Aligned_cols=64 Identities=27% Similarity=0.491 Sum_probs=47.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecce--------------------------------------------------
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKA-------------------------------------------------- 38 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~-------------------------------------------------- 38 (418)
..|+| +|+|++||.|++||+|+++++...
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 46999 999999999999999999987411
Q ss_pred -----------------ee----------EEecCCCeEEE-------------------------EEEecCCCccccCce
Q 014822 39 -----------------DM----------DVETFYDGYLA-------------------------KIMVDEGGVASVGSA 66 (418)
Q Consensus 39 -----------------~~----------~i~a~~~G~v~-------------------------~~~~~~g~~v~~g~~ 66 (418)
.. .|.||++|+|. ++.+.+|+.+..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 11 39999999999 999999999999999
Q ss_pred eEEeccC
Q 014822 67 IALLAES 73 (418)
Q Consensus 67 l~~i~~~ 73 (418)
|+.|.+.
T Consensus 187 l~~i~~~ 193 (328)
T PF12700_consen 187 LFTIADL 193 (328)
T ss_dssp SEEEEEE
T ss_pred eeeeccC
Confidence 9999754
No 81
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.06 E-value=0.0013 Score=65.07 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=28.8
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|+||++|+|..+.+.+|+.|.. ++|+.|.+.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 58899999999999999999986 8888886543
No 82
>PRK12784 hypothetical protein; Provisional
Probab=97.05 E-value=0.0034 Score=47.56 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=58.9
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceee-EEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADM-DVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~-~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
-.|++.++++.+++.|-+=++|+-|+++--.. .|.--.+|.|..+.+.+||.+..++.|+.+.++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47999999999999999999999999865544 588899999999999999999999999999754
No 83
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.04 E-value=0.0022 Score=60.48 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=51.3
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|.+ +..++.||.|++||+|+.|+. .+|+||.+|+|.. ++++|-.|..|.-|+.|.+-.
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCC
Confidence 3444 449999999999999999974 7999999999965 899999999999999997654
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.61 E-value=0.0034 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=31.5
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|.||++|+|.++++++|+.|..|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 4899999999999999999999999999997654
No 85
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.35 E-value=0.0073 Score=57.65 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=31.1
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
+.|+||++|+|..+.+.+|+.+..|++|+.|.+.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 3579999999999999999999999999998754
No 86
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.30 E-value=0.0067 Score=49.51 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=38.7
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVD 56 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~ 56 (418)
-|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|..|.-.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence 3455678999999999999999997 466889999999999987533
No 87
>PRK06748 hypothetical protein; Validated
Probab=96.15 E-value=0.008 Score=47.14 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=30.7
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
.|.||..|.|.++++++||.|..|++|+.++.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 48999999999999999999999999999987
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.06 E-value=0.016 Score=59.07 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.6
Q ss_pred EEecCCCeEEEEEEe-cCCCccccCceeEEeccC
Q 014822 41 DVETFYDGYLAKIMV-DEGGVASVGSAIALLAES 73 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~-~~g~~v~~g~~l~~i~~~ 73 (418)
.|+||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 599999999999876 699999999999999754
No 89
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.04 E-value=0.017 Score=57.70 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=32.2
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|+||.+|+|.+..+..|+.|..|++|+.+.+.+
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 345899999999999999999999999999987644
No 90
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.92 E-value=0.024 Score=55.51 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=47.3
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVES---DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet---~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+=+....++.||.|++||.|++|=. +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence 3356678999999999999999954 4567889999999994 55666778899988876
No 91
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=95.87 E-value=0.19 Score=52.34 Aligned_cols=40 Identities=35% Similarity=0.440 Sum_probs=35.2
Q ss_pred EEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q 014822 223 RVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQH 262 (418)
Q Consensus 223 ~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~ 262 (418)
+....++-..+.++++.+|++++|++.++..+++.|+.+.
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~~ 290 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSKV 290 (480)
T ss_pred EEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4466788888999999999999999999999999999973
No 92
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.59 E-value=0.034 Score=55.96 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVES----DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
|=+....++.||.|++||.|++|-. +....+|.||.+|+| +.....-.|..|+.|+.|
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI 358 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence 4467788999999999999999842 334445799999999 466777788999998876
No 93
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.55 E-value=0.024 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.4
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|.||..|+|.++++++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5889999999999999999999999999997644
No 94
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.45 E-value=0.054 Score=52.79 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=44.7
Q ss_pred EEEEEcCCCCeeecCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 13 IVSWVRSEGDKLCKGESVVVVES--DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 13 i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+.++.++.||.|++||+|++|-. .....+|+||.+|+| +.....-.|..|+.|+.|
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v--~~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIV--IGRNNLPLVNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEE--EEecCCCccCCCCEEEEe
Confidence 45679999999999999999953 123478999999999 455666678888888876
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.44 E-value=0.021 Score=42.03 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=29.7
Q ss_pred EecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 42 VETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
|.||.+|+|.++++++|+.|..|++|+.+...
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 68999999999999999999999999999643
No 96
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.44 E-value=0.018 Score=49.88 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=33.7
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
...|+||..|++.++++++||.|..||+|+.|+...=
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKm 106 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKM 106 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeec
Confidence 4569999999999999999999999999999987653
No 97
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.43 E-value=0.056 Score=53.42 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVES----DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|. .....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~--~~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLA--ARRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEE--EeeCCCccCCCCEEEEEe
Confidence 4466788999999999999999854 3456789999999995 344445688888888774
No 98
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.22 E-value=0.063 Score=53.24 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=45.7
Q ss_pred EEEEEcCCCCeeecCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 13 IVSWVRSEGDKLCKGESVVVVES----DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 13 i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+....++.||.|++||+|++|=. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 265 i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 265 LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 45678999999999999999954 33567899999999954 5566778889988876
No 99
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.99 E-value=0.031 Score=45.50 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=27.6
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
+|+||++|+|..+.+++|+.+..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 378888888888888888888888888888764
No 100
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.73 E-value=0.051 Score=51.59 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.|..-+++|+|||+|++||+|++-- .--.+-+.||.+|+|.+|.- |++=..-+++...+
T Consensus 37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~R--G~rR~l~svvI~~d 95 (257)
T PF05896_consen 37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINR--GERRKLLSVVIEAD 95 (257)
T ss_pred CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEec--CCCceEEEEEEEec
Confidence 3455688999999999999999742 11356689999999998876 44333333444443
No 101
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.61 E-value=0.056 Score=46.15 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=33.0
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|.||.+|+|.++++.+|+.|..|++|+.++...
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 566999999999999999999999999999997653
No 102
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.39 E-value=0.1 Score=50.91 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=39.8
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCccccCcee
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVES--DKADMDVETFYDGYLAKIMVDEGGVASVGSAI 67 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l 67 (418)
+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+ ...-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~--~~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYN--TATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe--eCCCccCCCCcc
Confidence 4467788999999999999999832 244678999999999543 333445566554
No 103
>PRK07051 hypothetical protein; Validated
Probab=94.15 E-value=0.067 Score=41.59 Aligned_cols=26 Identities=19% Similarity=0.564 Sum_probs=24.5
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 57999999999999999999999985
No 104
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.85 E-value=0.068 Score=40.90 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=29.6
Q ss_pred EEecCCCeEEEE------EEecCCCccccCceeEEeccChh
Q 014822 41 DVETFYDGYLAK------IMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 41 ~i~a~~~G~v~~------~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+|++|..|.+.+ +++++|+.|..|++|+.|+...-
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 678888876555 99999999999999999986543
No 105
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.83 E-value=0.059 Score=55.64 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=38.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMV 55 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~ 55 (418)
..|.--+.+|++||+|++||+|++-.. -..+.+.||.+|+|..|.-
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence 345666789999999999999998763 3688999999999999843
No 106
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.80 E-value=0.094 Score=45.73 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=34.1
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeE-EecCCCeEEEEEE
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMD-VETFYDGYLAKIM 54 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~~~ 54 (418)
+|..+-..+.+||.|.+||.|+-+.|-|-.+- ++||.+|+|.=+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 67777888999999999999999999998766 9999999996544
No 107
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.72 E-value=0.059 Score=52.31 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=25.9
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccChhh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDE 76 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~ 76 (418)
..|.++..|+|.+|++++|+.|+.|++|+.|.+....
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~ 38 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTDYE 38 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HHHH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeeccc
Confidence 5789999999999999999999999999999865543
No 108
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.72 E-value=0.099 Score=46.00 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999997543
No 109
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.55 E-value=0.18 Score=49.65 Aligned_cols=61 Identities=13% Similarity=0.308 Sum_probs=46.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVES---DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet---~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.++=+++.+|+.||.|++||.|+.|=. .+...||+|+.+|+|..... --.+..|+.+..+.
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~ 325 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVG 325 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeec
Confidence 356689999999999999999998854 48899999999999976532 22345555555554
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.22 E-value=0.21 Score=51.28 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 12 KIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 12 ~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+.-..++.|+.-..=+..+.|+.. -.+.|.++.+|+|.++++++|+.|+.|++|+.|.+.+
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 4555667777766666677888864 4788999999999999999999999999999997654
No 111
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.11 E-value=0.13 Score=50.84 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=33.9
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
.+.|.|+.+|+|.++++++|+.|..|++|+.|+....
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~ 78 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTNA 78 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchHH
Confidence 6789999999999999999999999999999976543
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.10 E-value=0.17 Score=50.50 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.3
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 31 VVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
+.|+++ .+.|.++.+|+|.++++++|+.|..|++|+.|....
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~ 83 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRP 83 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence 445544 688999999999999999999999999999997653
No 113
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.82 E-value=0.15 Score=50.35 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=37.1
Q ss_pred EEEEecceeeEEecCCC---eEEEEEEecCCCccccCceeEEeccCh
Q 014822 31 VVVESDKADMDVETFYD---GYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 31 ~~vet~K~~~~i~a~~~---G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
+.|+...-...|.++.+ |+|.++++++|+.|..|++|+.|.+..
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 34555555667899999 999999999999999999999997654
No 114
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.64 E-value=0.18 Score=57.96 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=48.3
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
|+..++.++.++.+..++.....+.. -...|.||..|.|.++++++||.|..|++|+.++...
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamK 1109 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMK 1109 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 56666677777766666554443322 2346999999999999999999999999999998754
No 115
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=92.58 E-value=0.27 Score=49.50 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=45.8
Q ss_pred EEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 12 KIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 12 ~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.+.-+.++.|+.-..=..-+.|+..+ ...|.++.+|.|.++++++|+.|..|++|+.|...
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 34555666665444333445666444 56899999999999999999999999999999654
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.55 E-value=0.32 Score=49.38 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=48.4
Q ss_pred EEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 14 VSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.-..++.|+....-+..+.|+..+ ...|.++.+|+|.++.+++|+.|+.|++|+.|++..
T Consensus 37 ~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~ 96 (385)
T PRK09859 37 GVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred EEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence 334556666555666777887664 788999999999999999999999999999997653
No 117
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.51 E-value=0.18 Score=52.23 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=37.4
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMV 55 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~ 55 (418)
-|.--+.+|++||+|++||+|++-... ....+.||.+|+|..|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 355567899999999999999976533 578999999999999843
No 118
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.34 E-value=0.3 Score=49.53 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=47.0
Q ss_pred EEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 14 VSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.-..++.|+.-..-...+.|+..+ ...|.++.+|+|.++++++|+.|+.|++|+.|.+..
T Consensus 39 ~v~~v~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~ 98 (385)
T PRK09578 39 TVVTVRPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAP 98 (385)
T ss_pred EEEEEEEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHH
Confidence 334555565444455667777654 679999999999999999999999999999996543
No 119
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.94 E-value=0.12 Score=50.00 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=23.5
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecceeeE
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDKADMD 41 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~ 41 (418)
...|.|.+++|++||.|++||+|++|+......+
T Consensus 7 ~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a~ 40 (305)
T PF00529_consen 7 LVGGIVTEILVKEGQRVKKGQVLARLDPTDYEAD 40 (305)
T ss_dssp SS-EEEEEE-S-TTEEE-TTSECEEE--HHHHHH
T ss_pred CCCeEEEEEEccCcCEEeCCCEEEEEEeeccchh
Confidence 4579999999999999999999999986544433
No 120
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.87 E-value=0.32 Score=50.60 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=35.9
Q ss_pred EEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 33 VESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
|..+.-...|.++..|+|.+++|++||.|..|++|+.+.+...
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3334445679999999999999999999999999999976543
No 121
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.68 E-value=0.32 Score=47.53 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=35.4
Q ss_pred EEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 32 VVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 32 ~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|+..+ ...|.+|.+|+|.++++++|+.|..|++|+.+..++
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence 444333 567999999999999999999999999999997643
No 122
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=91.51 E-value=0.19 Score=49.18 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=29.5
Q ss_pred eEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 29 SVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 29 ~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.-+.|+. -...|.++.+|.| ++++++|+.|..|++|+.+....
T Consensus 13 ~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 13 ASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 3445554 4677999999999 99999999999999999997553
No 123
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=91.40 E-value=3.7 Score=42.23 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=88.1
Q ss_pred EEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCC-------CeEE
Q 014822 223 RVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDG-------GLIT 295 (418)
Q Consensus 223 ~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~-------gl~~ 295 (418)
+.+..+++..+.+. .+..|.|++.+++-|++.+|.++ ++.+ + . ..-..+.+++.|.... |..+
T Consensus 231 ~~~~~~~~~~l~~~---a~~~g~T~ndvllaa~~~al~~~--~~~~---~-~-~~~~~i~~~~pv~~R~~~~~~~~~N~~ 300 (446)
T TIGR02946 231 FAAQSLPLADVKAV---AKAFGVTINDVVLAAVAGALRRY--LEER---G-E-LPDDPLVAMVPVSLRPMEDDSEGGNQV 300 (446)
T ss_pred EEeeccCHHHHHHH---HHHhCCCHHHHHHHHHHHHHHHH--HHHc---C-C-CCCCceEEEEeeeccccccCCCCCCEE
Confidence 34556666666444 34459999999999999999886 2221 1 1 1223477777776411 2111
Q ss_pred eEE--eC-CCCCCHHHHHHHHHHHHHHHHhCCC-------------CCC-------------CCCCCeEEEeecCCCCC-
Q 014822 296 PVL--QD-ADKADIYTLSRKWKELVDKARAKLL-------------QPH-------------EYNTGTFTLSNLGMFGV- 345 (418)
Q Consensus 296 pvi--~~-~~~~~l~~i~~~~~~~~~~a~~~~l-------------~~~-------------~~~~~t~~iSnlg~~g~- 345 (418)
..+ .- ....+..+...++++....+++... .|. .....++++||+|....
T Consensus 301 ~~~~~~l~~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvpg~~~~ 380 (446)
T TIGR02946 301 SAVLVPLPTGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVPGPREP 380 (446)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCCCCCcc
Confidence 111 11 1233444444555555555544311 000 00124788999985432
Q ss_pred --------CCeEecCCCCCceEEEeccceeEEEEccCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 346 --------DRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 346 --------~~~~pii~~p~~~il~iG~~~~~~v~~~~g~i~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
..+.++..+.....++++-..- +| .|.+++++|-.++.. ..+|.+.|++.|+.
T Consensus 381 ~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy------~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~ 441 (446)
T TIGR02946 381 LYLAGAKLDELYPLSPLLDGQGLNITVTSY------NG------QLDFGLLADRDAVPD--PQELADALEAALEE 441 (446)
T ss_pred cEecCeeEEEeeccccccCCCeEEEEEEec------CC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence 1122222111112233322221 45 489999999988874 77788877777654
No 124
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=91.32 E-value=0.23 Score=48.81 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred EEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 014822 15 SWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDE 57 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~ 57 (418)
..+|++||.|++|++|+|-- ---.+-+.||.+|+|..|+-.+
T Consensus 42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccc
Confidence 46899999999999999842 1145679999999999876544
No 125
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=91.31 E-value=0.21 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
|.-.+..|++||+|++||+|++.+ ......+.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 344567999999999999999984 4468999999999998764
No 126
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=91.08 E-value=0.32 Score=47.88 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=33.4
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
.+.|.++.+|.|.++++++|+.|+.|++|+.|+..+-
T Consensus 47 ~v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~ 83 (310)
T PRK10559 47 VVAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY 83 (310)
T ss_pred EEEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence 3679999999999999999999999999999976543
No 127
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.03 E-value=0.32 Score=49.51 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=34.2
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
.+.|.++.+|+|.++++++|+.|+.|++|+.|.+.+-
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~ 97 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDA 97 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHHH
Confidence 7889999999999999999999999999999976543
No 128
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=90.84 E-value=0.51 Score=48.11 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=42.2
Q ss_pred cCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 18 RSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 18 v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
++.++.-..-...+.|+... .++|.++.+|+|.++.+++|+.|..|++|+.|++..
T Consensus 45 v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 45 VKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred eeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 34443333333445666433 778999999999999999999999999999997654
No 129
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.84 E-value=0.41 Score=49.14 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=35.0
Q ss_pred cceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 36 DKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 36 ~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
..-...|.++.+|+|.++++++|+.|+.|++|+.|.....
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 3445689999999999999999999999999999976544
No 130
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=90.77 E-value=2.5 Score=39.97 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=25.4
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcCc
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIEDP 413 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p 413 (418)
..|-+.+||-++||.-...|+++|.+++.+.
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~ 159 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGL 159 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhcc
Confidence 5677889999999999999999999987654
No 131
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.67 E-value=0.28 Score=48.59 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+.|.++.+|+|.++++++||.|+.|++|+.|....
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 668999999999999999999999999999997653
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.65 E-value=0.43 Score=48.58 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=39.0
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 31 VVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+.|........|.++.+|+|.++++++|+.|+.|++|+.+.....
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 456667777779999999999999999999999999999976543
No 133
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.43 E-value=0.24 Score=38.05 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEec
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
+..+.=+.++++.||.|++||+||+|=++
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEES
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcC
Confidence 44555678889999999999999988544
No 134
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=89.70 E-value=0.84 Score=45.04 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEec
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
..|+|.+++|++||+|..|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 4699999999999999999999999876
No 135
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=89.64 E-value=0.39 Score=52.37 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=36.2
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
-|.-.+.+|++||+|.+||+|++-. .-....|.||.+|+|..|.
T Consensus 45 iG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 45 IGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 3555678999999999999999764 3357899999999998754
No 136
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=89.42 E-value=0.26 Score=43.09 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=37.3
Q ss_pred EcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 014822 17 VRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEG 58 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g 58 (418)
+-+.|-.|.+||.++-+|+-|+.-+|.+|.+|.|++|.-+-.
T Consensus 87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 347899999999999999999999999999999999865443
No 137
>PF13437 HlyD_3: HlyD family secretion protein
Probab=88.68 E-value=0.67 Score=37.46 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=25.1
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVES 35 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet 35 (418)
..|.|..+.+++|+.|..|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 479999999999999999999999974
No 138
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=88.37 E-value=1 Score=40.21 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=36.0
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCccccCceeEEec
Q 014822 27 GESVVVVESDKADMDVETFYDGYLAKI-----------------------------------MVDEGGVASVGSAIALLA 71 (418)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~v~~g~~l~~i~ 71 (418)
||-+++.=++ ..|.||.+|+|..+ ++++||.|..|++|+.+.
T Consensus 48 GdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 48 GDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred cceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 7788877654 57889999988776 799999999999999996
Q ss_pred c
Q 014822 72 E 72 (418)
Q Consensus 72 ~ 72 (418)
-
T Consensus 125 ~ 125 (169)
T PRK09439 125 L 125 (169)
T ss_pred H
Confidence 3
No 139
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=88.20 E-value=0.6 Score=41.24 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=31.4
Q ss_pred eEEecCCCeEEEE-------EEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAK-------IMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~-------~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|.||..|++.. +++++|+.|..|++|+.|+...
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK 122 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMK 122 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecc
Confidence 4699999999987 5899999999999999998654
No 140
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=88.12 E-value=0.87 Score=39.03 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCccccCceeEEec
Q 014822 27 GESVVVVESDKADMDVETFYDGYLAKI-----------------------------------MVDEGGVASVGSAIALLA 71 (418)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~v~~g~~l~~i~ 71 (418)
|+.++..=++. .|.||++|+|..+ ++++||.|..|++|+.+.
T Consensus 30 G~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 30 GDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp SEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred cCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 67777665443 6889999988887 788999999999999995
Q ss_pred c
Q 014822 72 E 72 (418)
Q Consensus 72 ~ 72 (418)
-
T Consensus 107 ~ 107 (132)
T PF00358_consen 107 L 107 (132)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=88.11 E-value=0.58 Score=44.52 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEE-------EEecCCCccccCceeEEeccChh
Q 014822 40 MDVETFYDGYLAK-------IMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 40 ~~i~a~~~G~v~~-------~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
..|.||..|++.+ +++++||.|..|++|+.|+...-
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence 4589999999999 59999999999999999986543
No 142
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=88.05 E-value=0.46 Score=49.21 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=35.8
Q ss_pred EEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIM 54 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~ 54 (418)
...+|++||+|.+||+|.+=+. ....+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5678999999999999999875 88999999999999987
No 143
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.02 E-value=1.5 Score=42.89 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=25.0
Q ss_pred EEEEEcCCCCeeecCCeEEEEEe--cceeeEEecCCCeEEEEE
Q 014822 13 IVSWVRSEGDKLCKGESVVVVES--DKADMDVETFYDGYLAKI 53 (418)
Q Consensus 13 i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~i~a~~~G~v~~~ 53 (418)
|.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 45566777777777777776632 112345677777776543
No 144
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=87.93 E-value=1.3 Score=37.47 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=39.4
Q ss_pred eEEEEEEEcCCCCee-ec---CCeEEEEEecceeeEEecCCCeEEEEE--------------------------------
Q 014822 10 EGKIVSWVRSEGDKL-CK---GESVVVVESDKADMDVETFYDGYLAKI-------------------------------- 53 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V-~~---g~~l~~vet~K~~~~i~a~~~G~v~~~-------------------------------- 53 (418)
.|+++.+. +.-|.| .+ |+-++.+=++ ..|.||++|+|..+
T Consensus 6 ~G~~~~l~-~v~D~vFs~~~lG~GvaI~P~~---~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~g 81 (124)
T cd00210 6 TGEIVPLD-QVPDEVFASKMMGDGFAIKPSD---GKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEG 81 (124)
T ss_pred ceEEEEhh-hCcChHhcccCccceEEEEccC---CeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCc
Confidence 45555553 333332 22 5666665443 46778888877665
Q ss_pred ---EecCCCccccCceeEEecc
Q 014822 54 ---MVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 54 ---~~~~g~~v~~g~~l~~i~~ 72 (418)
++++||.|..|++|+.+.-
T Consensus 82 F~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 82 FTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred eEEEecCCCEEcCCCEEEEEcH
Confidence 7899999999999999953
No 145
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=87.79 E-value=1.1 Score=46.04 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.3
Q ss_pred eEEEEEecc-eeeEEecCCCeEEEEEE-ecCCCccccCceeEEeccCh
Q 014822 29 SVVVVESDK-ADMDVETFYDGYLAKIM-VDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 29 ~l~~vet~K-~~~~i~a~~~G~v~~~~-~~~g~~v~~g~~l~~i~~~~ 74 (418)
..+.|+.+. -...|.++.+|.|.+++ +.+||.|+.||+|+.|..++
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence 345565433 35679999999999998 99999999999999997543
No 146
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.75 E-value=0.64 Score=49.80 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.4
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+|.||..|+|.++++++||.|..|++|+.++...-
T Consensus 527 ~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKm 561 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKM 561 (596)
T ss_pred eEecCcceEEEEEEeCCCCEeCCCCEEEEEEecce
Confidence 59999999999999999999999999999987653
No 147
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=87.39 E-value=1.2 Score=43.07 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCeeecCCeE--EEEE-ec-ceeeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 12 KIVSWVRSEGDKLCKGESV--VVVE-SD-KADMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 12 ~i~~w~v~~Gd~V~~g~~l--~~ve-t~-K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
=+....++.||.|++||+| .++- .. -...++.||.+|+| +.....-.|..|+.|+.+.
T Consensus 229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 3568899999999999999 6553 22 23568999999999 6888888999999999874
No 148
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.03 E-value=0.6 Score=47.95 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
-..|.|.+++|++||.|++||+|++|++..
T Consensus 64 ~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 64 PGSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred CCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 357999999999999999999999998663
No 149
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.83 E-value=1.6 Score=36.82 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=17.2
Q ss_pred EecCCCccccCceeEEecc
Q 014822 54 MVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~ 72 (418)
++++||.|..|++|+.+.-
T Consensus 85 ~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 85 HVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 7999999999999999953
No 150
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.71 E-value=1.4 Score=37.43 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=35.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeE-EecCCCeEEEE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMD-VETFYDGYLAK 52 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~ 52 (418)
.||-++..-+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvy 142 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVY 142 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEE
Confidence 367777778888888888888888888887766 78888888853
No 151
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=86.06 E-value=0.82 Score=47.37 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=26.5
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEec
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
...|+|.+|++++||.|..|++|+.|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 46899999999999999999999999854
No 152
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.78 E-value=0.95 Score=48.49 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
..|.||..|.|.++++++||.|..|++|+.++...-
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm 553 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM 553 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 479999999999999999999999999999987654
No 153
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=85.73 E-value=0.86 Score=47.69 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
.+.||..|+|+.+.+++|+.|..|++|+.++...=
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKM 611 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKM 611 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEehhc
Confidence 38999999999999999999999999999987643
No 154
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=85.59 E-value=0.79 Score=36.24 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEEcCCCCeeecCCeEEEEEe
Q 014822 13 IVSWVRSEGDKLCKGESVVVVES 35 (418)
Q Consensus 13 i~~w~v~~Gd~V~~g~~l~~vet 35 (418)
=++|++++|+.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 36799999999999999999984
No 155
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=85.55 E-value=1.6 Score=38.31 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=17.5
Q ss_pred EecCCCccccCceeEEecc
Q 014822 54 MVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~ 72 (418)
++++||.|..||+|+.+.-
T Consensus 92 ~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 92 LVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EeeCCCEEccCCEEEEECH
Confidence 8999999999999999953
No 156
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.53 E-value=1 Score=39.73 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=31.4
Q ss_pred eEEecCCCeEEEE-------EEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAK-------IMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~-------~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|.||.-|++.. ++++.|+.|..|++|+.++...
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK 121 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMK 121 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecc
Confidence 5799999999987 6899999999999999998654
No 157
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.43 E-value=0.78 Score=47.69 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.1
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecce
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDKA 38 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~ 38 (418)
...|.|.+++|++||.|++||+|+.++....
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 4569999999999999999999999976543
No 158
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=85.40 E-value=1.7 Score=39.59 Aligned_cols=52 Identities=21% Similarity=0.373 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeE
Q 014822 12 KIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIA 68 (418)
Q Consensus 12 ~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~ 68 (418)
.|.. .+++|+.|++||.+.-++-. .++.+-.|.+ .++.+++|+.|..|+.|.
T Consensus 131 ~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 131 RIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred EEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 4433 45899999999999999966 5666666765 377899999999999653
No 159
>PRK09294 acyltransferase PapA5; Provisional
Probab=85.17 E-value=21 Score=36.24 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=30.0
Q ss_pred EEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q 014822 223 RVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQH 262 (418)
Q Consensus 223 ~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~ 262 (418)
.....++-....++++.+++.++|++.+++-|++.++.+.
T Consensus 208 ~~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 208 VTRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQL 247 (416)
T ss_pred eeEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 3455677555566677777779999999999998887654
No 160
>PRK12784 hypothetical protein; Provisional
Probab=84.04 E-value=1.2 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=33.9
Q ss_pred cceee-EEecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 36 DKADM-DVETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 36 ~K~~~-~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
||+.+ +|.||+-|+|.++++.+++.|..=.+|+.|...+.
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 34444 48999999999999999999999999999976543
No 161
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=83.69 E-value=1.3 Score=47.44 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.7
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|.||..|.|.++++++|+.|..|++|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 447999999999999999999999999999997654
No 162
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.69 E-value=2.9 Score=40.83 Aligned_cols=47 Identities=28% Similarity=0.303 Sum_probs=38.0
Q ss_pred cCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 26 KGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 26 ~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.-...+.++. .-...+.++..|.|.++++++||.|..|++|+.+.+.
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3344555555 3344788899999999999999999999999999874
No 163
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=83.57 E-value=2.5 Score=37.17 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=38.4
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeE--------EecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMD--------VETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~--------i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+|+--+-+|++||+|++||+|+++.-+...-- |-+-.+-+-.-+....+-.+..|+.+..+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 46677889999999999999999986653222 22222222222233334467777777654
No 164
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=83.51 E-value=2.2 Score=39.45 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=42.0
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCc-eeEE
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGS-AIAL 69 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~-~l~~ 69 (418)
++|+. .+++|+.+++||.+.-++-. .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 34444 46899999999999999966 4666666765 278999999999998 4544
No 165
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=83.41 E-value=1.8 Score=43.40 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=33.8
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccChhh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESEDE 76 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~~ 76 (418)
.+.|.+..+|+|.++.+..++.|..|++|+.|++..-.
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~ 90 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYR 90 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHH
Confidence 45589999999999999999999999999999876544
No 166
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.22 E-value=1.7 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.7
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|.||.+|+|.++.+++|+.|..|++|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 356999999999999999999999999999997654
No 167
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=80.77 E-value=1.5 Score=37.23 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
+|+--++++++||+|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4666889999999999999999997543
No 168
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=80.40 E-value=1.5 Score=37.04 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.7
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4566789999999999999999997544
No 169
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=80.25 E-value=2.1 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=23.1
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVV 33 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~v 33 (418)
.+|+|++++++.|+.|..|+.|++|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 5799999999999999999999875
No 170
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.04 E-value=1.6 Score=42.66 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=25.8
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEe
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVES 35 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet 35 (418)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 679999999999999999999999987
No 171
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=79.35 E-value=2.2 Score=49.79 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=32.7
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...|.||..|.|.++++++||.|+.|++|+.++...
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 455999999999999999999999999999997654
No 172
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=78.26 E-value=4 Score=36.47 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=24.1
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4666789999999999999999997654
No 173
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=78.09 E-value=2.5 Score=43.40 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=26.5
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEec
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
-.+|+|.++++++||.|..|++|++|+..
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 46899999999999999999999999854
No 174
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=77.89 E-value=2.6 Score=41.75 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=26.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
..|+|.++++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999998654
No 175
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=77.67 E-value=3.7 Score=37.73 Aligned_cols=59 Identities=25% Similarity=0.250 Sum_probs=44.9
Q ss_pred ceEEEEEEEc-CCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEE
Q 014822 9 TEGKIVSWVR-SEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIAL 69 (418)
Q Consensus 9 ~~g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~ 69 (418)
.-|+|+-+.. ++|+.|++||.+.-++- -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 3456666654 69999999999999986 44555555544433 889999999999999873
No 176
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=77.57 E-value=2.7 Score=30.32 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVV 33 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~v 33 (418)
..|++.++++++|+.+..|++|++|
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4689999999999999999999875
No 177
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.55 E-value=2.8 Score=42.88 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=26.7
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEec
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
..+|+|.++++++||.|..|++|+.|+.+
T Consensus 49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 49 PADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 46899999999999999999999999854
No 178
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=76.95 E-value=2.9 Score=42.79 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=27.2
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
-.+|+|.++++++||.|..|++|++|+.+.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 468999999999999999999999998654
No 179
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=76.14 E-value=3.2 Score=42.46 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.0
Q ss_pred CCceEEEEEEEcCCCCeeecCCeEEEEEeccee
Q 014822 7 TMTEGKIVSWVRSEGDKLCKGESVVVVESDKAD 39 (418)
Q Consensus 7 ~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~ 39 (418)
+..+|+|.++++++||+|..|++|+.|++.-..
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 456899999999999999999999999976543
No 180
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=74.86 E-value=2 Score=36.78 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
+|+--+++|++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 3555789999999999999999997554
No 181
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=74.78 E-value=3.9 Score=44.22 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=37.5
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceee-------EEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADM-------DVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~-------~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+|+--+.+|++||+|++||+|+++.-++..- .+--........+....+..+..|+.+..+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 4566789999999999999999997654321 111111112223344445567777776653
No 182
>PRK12999 pyruvate carboxylase; Reviewed
Probab=74.36 E-value=3.5 Score=47.87 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=32.3
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..|.||..|+|.++++++||.|+.|++|+.++...
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamK 1111 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMK 1111 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 56999999999999999999999999999998654
No 183
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=73.97 E-value=4 Score=41.98 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.7
Q ss_pred CCceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 7 TMTEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 7 ~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
...+|+|.+|++++||.|..|++|++|+.++
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 3568999999999999999999999998654
No 184
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=71.13 E-value=6.7 Score=37.75 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=41.5
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
..|..|.. +|+.|++||.+..++-. .++.+--|.+ .+ ++.++.|+.|..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 34555544 49999999999999875 4555554543 34 6779999999999999764
No 185
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=69.62 E-value=6 Score=42.83 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=37.0
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEeccee--------eEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKAD--------MDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~--------~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
+|+--+++|++||+|++||+|+++.-++.. +-|-...+. ...+....+..+..|+++..+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~-~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDD-YTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEcccc-ccceeeccCCcccCCCeEEEe
Confidence 455668999999999999999999765432 112222121 112233344557778776654
No 186
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=68.24 E-value=5.9 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=29.4
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
+.-|+||.+|++.. .++.|+.|+.|++|+.+.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45599999999965 9999999999999999964
No 187
>PRK05691 peptide synthase; Validated
Probab=68.07 E-value=1.9e+02 Score=39.10 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.7
Q ss_pred EEEEeecccccchHHHHHHHHHHHHHhc
Q 014822 384 QVNVTADHRVIYGADLASFLQTLAKIIE 411 (418)
Q Consensus 384 ~lslt~DHRviDG~~aa~Fl~~l~~~le 411 (418)
-+-+++||-++||+-...|+++|..+..
T Consensus 802 ~l~l~~HHii~DG~S~~ll~~el~~~Y~ 829 (4334)
T PRK05691 802 QLLVTLHHIVADGWSLNILLDEFSRLYA 829 (4334)
T ss_pred EEEEeeCceeeccchHHHHHHHHHHHHH
Confidence 4679999999999999999999988763
No 188
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=67.90 E-value=8.9 Score=47.49 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.9
Q ss_pred EEEcCCCCeeecCCeEEEEE
Q 014822 15 SWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~ve 34 (418)
.++|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999864
No 189
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=67.90 E-value=6.7 Score=40.59 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCe-eecCCeEEEEEecc
Q 014822 8 MTEGKIVSWVRSEGDK-LCKGESVVVVESDK 37 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~-V~~g~~l~~vet~K 37 (418)
...|+|.+|++++||. |..|++|++|+.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 4679999999999999 99999999998654
No 190
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=67.82 E-value=8.8 Score=40.13 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=37.1
Q ss_pred EEEEecceeeEEecCCCeEEEEE------------------------EecCCCccccCceeEEeccC
Q 014822 31 VVVESDKADMDVETFYDGYLAKI------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 31 ~~vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
..+...+-..+|.|+.+|+|..| +++.||.|..|++|+.|-..
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 44555678999999999999987 88999999999999999743
No 191
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=66.94 E-value=4.7 Score=41.87 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=31.2
Q ss_pred EecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 42 VETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+.||..|+|.++++++|+.|..||.|+.+....-
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKM 637 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKM 637 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEecch
Confidence 7999999999999999999999999999876654
No 192
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=66.75 E-value=4.6 Score=43.26 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred EEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 41 DVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 41 ~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.|-||..|+|.+|.+++|+.|..|++|+.+....
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMK 1141 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMK 1141 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeecce
Confidence 3789999999999999999999999999997654
No 193
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=66.35 E-value=9.6 Score=41.36 Aligned_cols=43 Identities=33% Similarity=0.421 Sum_probs=35.4
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCccccCceeEEec
Q 014822 27 GESVVVVESDKADMDVETFYDGYLAKI-----------------------------------MVDEGGVASVGSAIALLA 71 (418)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~v~~g~~l~~i~ 71 (418)
||-+++.=++ -.|.||.+|+|..+ ++++||.|+.||+|++++
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 6777766554 47899999998876 799999999999999996
Q ss_pred c
Q 014822 72 E 72 (418)
Q Consensus 72 ~ 72 (418)
-
T Consensus 603 ~ 603 (648)
T PRK10255 603 L 603 (648)
T ss_pred H
Confidence 4
No 194
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=65.11 E-value=7.9 Score=37.13 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 11 GKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 11 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
|+|+ | ..+|+.|++||.+.-++-. .++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4555 2 4579999999999999877 666666555432224567889999999988754
No 195
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=64.76 E-value=11 Score=36.29 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred cCCCCeeec-CCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEe
Q 014822 18 RSEGDKLCK-GESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALL 70 (418)
Q Consensus 18 v~~Gd~V~~-g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i 70 (418)
++.|+.|.+ |++|++.. .-++++|++|.+ ++-+...+.+|+..+++
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~l 272 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVRL 272 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeeeC
Confidence 566888888 99999853 378999999966 56677777788877653
No 196
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=64.45 E-value=17 Score=36.60 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred EcCCCCeeecCCeEEEE-EecceeeEEecC--CCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 17 VRSEGDKLCKGESVVVV-ESDKADMDVETF--YDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~~~~i~a~--~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++||.|..||.+..| |+.-.++.|-.| ..|.|.. .+.+|+ ..+-+.++.++..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~-~~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEE-EecCCC-eeEEEEEEEEEeCC
Confidence 57999999999999988 454455555444 5999965 445566 56667788886533
No 197
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=64.17 E-value=11 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=34.7
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCccccCceeEEec
Q 014822 27 GESVVVVESDKADMDVETFYDGYLAKI-----------------------------------MVDEGGVASVGSAIALLA 71 (418)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~v~~g~~l~~i~ 71 (418)
||-++..=++ -.|.||.+|+|..+ ++++||+|+.||+|++++
T Consensus 506 G~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 506 GKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 6666655443 47999999998876 889999999999999996
Q ss_pred c
Q 014822 72 E 72 (418)
Q Consensus 72 ~ 72 (418)
-
T Consensus 583 ~ 583 (627)
T PRK09824 583 I 583 (627)
T ss_pred H
Confidence 3
No 198
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=64.11 E-value=11 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.1
Q ss_pred EEEEEecCCCccccCceeEEeccCh
Q 014822 50 LAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 50 v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
+..+.++.|+.|+.|+.|+.+....
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred cccccceecccccCCCEEEecCCCC
Confidence 4455688999999999999997543
No 199
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=63.86 E-value=5.5 Score=43.62 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=31.2
Q ss_pred EecCCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 42 VETFYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 42 i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
|-||..|+|.++.++.|+.|..|++|+.++...=
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKM 1115 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKM 1115 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhhhh
Confidence 7899999999999999999999999999986543
No 200
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=63.84 E-value=69 Score=37.61 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred ceeccCCchhHHHHHHhhhcCCcceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccC
Q 014822 197 ASVVPFTTMQGAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRD 271 (418)
Q Consensus 197 ~~~~~~s~~r~~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~ 271 (418)
....|+|..|+.+.-.-......+.|++..-++++. .+.. ..+-+|+...+.+|+.||.+|..
T Consensus 5 ~~~~Pls~~Q~~lw~~~~~~~~~~~yn~~~~~~l~g-----------~ld~-~~l~~Al~~lv~rh~~LRt~f~~ 67 (1296)
T PRK10252 5 SQHLPLVAAQPGIWMAEKLSPLPSAWSVAHYVELTG-----------ELDA-PLLARAVVAGLAEADTLRMRFTE 67 (1296)
T ss_pred cCCCCCCHHHHHHHHHHHhCCCCCceeeeEEEEEeC-----------CCCH-HHHHHHHHHHHHhccceEEEEEc
Confidence 345699999998864433334445566555555432 1121 34567888889999999999853
No 201
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=63.65 E-value=14 Score=39.34 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred EcCCCCeeecCCeEEEE-EecceeeEEec--CCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 17 VRSEGDKLCKGESVVVV-ESDKADMDVET--FYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~~~~i~a--~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++||.|..||++++| ||.-..+-|-. ...|+|.++ +.+|+ ..+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeCC
Confidence 58889999999999987 56555555544 457999764 56666 67899999998533
No 202
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=62.88 E-value=12 Score=40.39 Aligned_cols=43 Identities=16% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCccccCceeEEec
Q 014822 27 GESVVVVESDKADMDVETFYDGYLAKI-----------------------------------MVDEGGVASVGSAIALLA 71 (418)
Q Consensus 27 g~~l~~vet~K~~~~i~a~~~G~v~~~-----------------------------------~~~~g~~v~~g~~l~~i~ 71 (418)
||-+++.=++ ..|.||.+|+|..+ ++++||.|+.||+|++++
T Consensus 490 G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 490 GKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 6666665433 47899999988776 799999999999999996
Q ss_pred c
Q 014822 72 E 72 (418)
Q Consensus 72 ~ 72 (418)
-
T Consensus 567 ~ 567 (610)
T TIGR01995 567 L 567 (610)
T ss_pred H
Confidence 3
No 203
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=62.52 E-value=10 Score=39.16 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=28.2
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
+-|++++||.++||.-+..|++.+.+++..
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999999875
No 204
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=62.36 E-value=10 Score=41.09 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.5
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecce
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKA 38 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~ 38 (418)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 45667889999999999999999986654
No 205
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.89 E-value=9.8 Score=37.10 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
..-|+||.+|++ ...++.|+.|..||+|+.|.+.-
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 567999999988 56899999999999999997654
No 206
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=61.80 E-value=9.5 Score=39.80 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCceEEEEEEEcCCCC-eeecCCeEEEEEec
Q 014822 7 TMTEGKIVSWVRSEGD-KLCKGESVVVVESD 36 (418)
Q Consensus 7 ~~~~g~i~~w~v~~Gd-~V~~g~~l~~vet~ 36 (418)
...+|+|.++++++|+ .|+.|++|++|+.+
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 3568999999999995 79999999999854
No 207
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=61.26 E-value=8.2 Score=37.17 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=14.6
Q ss_pred EEEEEEEchHHHHHHHHHhc
Q 014822 223 RVGYTITTDALDALYKKIKS 242 (418)
Q Consensus 223 ~~~~~vDvt~l~~~~~~~k~ 242 (418)
....||.+..+.++.+.++.
T Consensus 188 ~~kIEVEvesle~~~eAl~a 207 (280)
T COG0157 188 TKKIEVEVESLEEAEEALEA 207 (280)
T ss_pred CceEEEEcCCHHHHHHHHHc
Confidence 45678888888887777654
No 208
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=60.78 E-value=18 Score=37.32 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=35.9
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCccccCceeEEeccCh
Q 014822 33 VESDKADMDVETFYDGYLAKI-------------------------------MVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~v~~g~~l~~i~~~~ 74 (418)
+-.-+...+|.|+.+|+|..+ +.+.||.|..|++|+.|-.+.
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 445677889999999999988 788999999999999998443
No 209
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=60.62 E-value=1.8e+02 Score=29.72 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=57.8
Q ss_pred EEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEe------C-------
Q 014822 224 VGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAV------D------- 290 (418)
Q Consensus 224 ~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~------~------- 290 (418)
....|+-+++..+...+|.+|.|++++++.|+++--..+-.. . + -.++.+.++++|+. .
T Consensus 218 ~~~~I~~~ef~~ikay~k~~gaTiNDiilaa~~~fr~~y~~~---~----~-k~~~~lsi~~~VDlRkyl~sk~~sI~Nl 289 (439)
T COG4908 218 EKTTIPSDEFKKIKAYAKVHGATINDIILAALLKFRLLYNTT---H----E-KANNYLSIDMPVDLRKYLPSKEESISNL 289 (439)
T ss_pred EEEecCHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhh---c----h-hhcCeeeeceeeehhhhccccccceecc
Confidence 467889888877777777779999999999985432221111 0 1 24566677777764 1
Q ss_pred CCeEEeEEeCCCCCCHHHHHHHHHHHHH
Q 014822 291 GGLITPVLQDADKADIYTLSRKWKELVD 318 (418)
Q Consensus 291 ~gl~~pvi~~~~~~~l~~i~~~~~~~~~ 318 (418)
.+....+|+..+..+|....+.+++...
T Consensus 290 s~~~~i~I~~dd~~~fe~t~~~vk~~~~ 317 (439)
T COG4908 290 SSYLTIVINVDDVTDFEKTLEKVKGIMN 317 (439)
T ss_pred ceeEEEEEeccccccHHHHHHHHHhhcC
Confidence 1245667888888888887777665443
No 210
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=60.48 E-value=11 Score=38.86 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.0
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998865
No 211
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.46 E-value=11 Score=37.02 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=30.2
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
..-|+||.+|.+. ..++.|+.|+.||+|+.|.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCCEECCCCEEEEEeCC
Confidence 5679999999984 579999999999999999874
No 212
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=59.29 E-value=11 Score=38.44 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=25.8
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
+-|++++||.++||.-+..|++.+.+.+..
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRG 176 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcC
Confidence 678899999999999999999999998865
No 213
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=58.92 E-value=12 Score=38.59 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
+-|++++||.++||.-+..|++.+.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999999875
No 214
>PRK04350 thymidine phosphorylase; Provisional
Probab=58.42 E-value=17 Score=38.04 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=36.6
Q ss_pred EEEecceeeEEecCCCeEEEEE------------------------EecCCCccccCceeEEeccC
Q 014822 32 VVESDKADMDVETFYDGYLAKI------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 32 ~vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
.+...+...+|.|+.+|+|..| +.+.||.|..|++|+.|-..
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 3556778999999999999987 78999999999999999743
No 215
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.28 E-value=13 Score=36.22 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred ceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 37 KADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 37 K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
....-++||..|++ ...++.|+.|+.|++|+.+.+.-
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 34567999999998 46789999999999999997643
No 216
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=58.26 E-value=16 Score=38.21 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.0
Q ss_pred EEecceeeEEecCCCeEEEEE------------------------EecCCCccccCceeEEeccC
Q 014822 33 VESDKADMDVETFYDGYLAKI------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
+-..+...+|.||.+|+|..| +.+.||.|..|++|+.|-..
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 455677899999999999988 78999999999999999743
No 217
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.16 E-value=13 Score=36.22 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
...++||.+|.+. ..++.|+.|..|++|+.+.+..
T Consensus 219 ~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 219 SVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred CeEEecCCCeEEE-EecCCCCEECCCCEEEEEECCC
Confidence 3679999999985 5999999999999999997643
No 218
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=57.42 E-value=13 Score=37.45 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.8
Q ss_pred eEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 40 MDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 40 ~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.-|+||..|.+ .-+++.|+.|+.|++|+.|.+..
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 45999999998 46899999999999999997654
No 219
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=57.22 E-value=23 Score=36.55 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=34.4
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCccccCceeEEeccC
Q 014822 35 SDKADMDVETFYDGYLAKI-------------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 35 t~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
.-+-..+|.|+.+|+|.++ +.+.||.|..|++|+.|-..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 4577899999999999988 78899999999999999743
No 220
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=56.11 E-value=13 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=27.0
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
-.+|+|.++++++|+.|..|++|+.|+.+.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 357999999999999999999999998654
No 221
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=55.93 E-value=19 Score=36.78 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=35.6
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCccccCceeEEeccC
Q 014822 33 VESDKADMDVETFYDGYLAKI-------------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 33 vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
+-..+...+|.|+.+|+|..| +.+.|+.|..|++|+.|-..
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 445778899999999999987 78899999999999999743
No 222
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.73 E-value=23 Score=30.22 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred ecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 43 ETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 43 ~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.-|..|++.-..+..|+.+..|++++-+..-
T Consensus 95 ~iPvEGYvVtpIaDvG~RvrkGd~~AAvttR 125 (161)
T COG4072 95 LIPVEGYVVTPIADVGNRVRKGDPFAAVTTR 125 (161)
T ss_pred EEecCcEEEEEeecccchhcCCCceeEEEec
Confidence 3489999999999999999999999998653
No 223
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=55.71 E-value=13 Score=38.74 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=29.0
Q ss_pred EEEEEEeecccccchHHHHHHHHHHHHHhcCc
Q 014822 382 QMQVNVTADHRVIYGADLASFLQTLAKIIEDP 413 (418)
Q Consensus 382 ~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p 413 (418)
...|.+.+||.+.||.-+..|.+.|-+.|..+
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~ 171 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSL 171 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999864
No 224
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=55.60 E-value=12 Score=39.77 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=25.4
Q ss_pred CCceEEEEEEEcCCCC-eeecCCeEEEEEe
Q 014822 7 TMTEGKIVSWVRSEGD-KLCKGESVVVVES 35 (418)
Q Consensus 7 ~~~~g~i~~w~v~~Gd-~V~~g~~l~~vet 35 (418)
...+|+|.++++++|+ .|..|++||++..
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 3568999999999996 7999999998853
No 225
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=54.81 E-value=17 Score=37.47 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=27.9
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 778999999999999999999999998865
No 226
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=54.58 E-value=18 Score=36.76 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=38.1
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEE-------EecCCCccccCceeEEe
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKI-------MVDEGGVASVGSAIALL 70 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~-------~~~~g~~v~~g~~l~~i 70 (418)
+|+-..+.+.|-... +...++.--.|-|..+|+|.++ .|++||.|..||+|..=
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 466666666554332 3333445567899999999998 47788999999999864
No 227
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.43 E-value=13 Score=35.99 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=12.2
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 455566666666665555554
No 228
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=54.40 E-value=20 Score=37.03 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=34.5
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCccccCceeEEeccC
Q 014822 35 SDKADMDVETFYDGYLAKI-------------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 35 t~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
..+-..+|+|+.+|+|.+| +.+.|+.|..|++|+.|-..
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 4677899999999999887 78899999999999999743
No 229
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=54.39 E-value=11 Score=38.82 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 46 YDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 46 ~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
..|.|.+|.-+|||.++.|++|++|+.+..
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEecccc
Confidence 489999999999999999999999987654
No 230
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=54.02 E-value=15 Score=36.36 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=29.9
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
..-|.||.+|++. ..++.|+.|+.|++|+.|.+.
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCCEeCCCCEEEEEECC
Confidence 3469999999995 689999999999999999874
No 231
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=53.92 E-value=21 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=20.2
Q ss_pred ceEEEEEE-------EcCCCCeeecCCeEEE
Q 014822 9 TEGKIVSW-------VRSEGDKLCKGESVVV 32 (418)
Q Consensus 9 ~~g~i~~w-------~v~~Gd~V~~g~~l~~ 32 (418)
..|.|+++ .|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 46888877 6899999999999973
No 232
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.21 E-value=23 Score=34.94 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=31.5
Q ss_pred ceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 37 KADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 37 K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
+...-|+||.+|.+ .-.++.|+.|+.|++|+.|.+.-
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECCC
Confidence 34467999999988 46899999999999999998753
No 233
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=52.78 E-value=15 Score=34.67 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=36.9
Q ss_pred CCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEE
Q 014822 21 GDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIAL 69 (418)
Q Consensus 21 Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~ 69 (418)
|+.|++||.+.-++-. .++.+--|.+-+-.+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999864 56666555432222578899999999999863
No 234
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=52.40 E-value=12 Score=29.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=18.1
Q ss_pred EEEEEcCCCCeeecCCeEEEEEec
Q 014822 13 IVSWVRSEGDKLCKGESVVVVESD 36 (418)
Q Consensus 13 i~~w~v~~Gd~V~~g~~l~~vet~ 36 (418)
+....|++||.|++||.|+.+...
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 445569999999999999999743
No 235
>COG3608 Predicted deacylase [General function prediction only]
Probab=51.52 E-value=24 Score=35.00 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=30.2
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.--+.||..|.| ..+++.||.|..|++|+.+.+.
T Consensus 256 ~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 256 DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred cceeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 345999999988 6799999999999999999875
No 236
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=51.27 E-value=28 Score=39.92 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=40.8
Q ss_pred EcCCCCeeecCCeEEEE-EecceeeEE--ecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 17 VRSEGDKLCKGESVVVV-ESDKADMDV--ETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~~~~i--~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
.+++||+|..||++.+| ||.=..+-| +....|+|+.| +.+|+ ..+-++++.++.
T Consensus 123 ~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~~ 179 (1017)
T PRK14698 123 KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVKT 179 (1017)
T ss_pred eeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEEc
Confidence 37889999999999988 555455555 44458999764 56776 567889999975
No 237
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.90 E-value=16 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=11.9
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 67 v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 67 VTLAVADGERFEAGDILATVT 87 (281)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 455555555555555555554
No 238
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=50.82 E-value=12 Score=38.44 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.2
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
+..+-=+.|+++.||.|++||+|++|=
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 445556889999999999999999985
No 239
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=50.80 E-value=41 Score=39.52 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=30.5
Q ss_pred EEcCCCCeeecCCeEEEEEec-------ceeeEEecCCCeEEE
Q 014822 16 WVRSEGDKLCKGESVVVVESD-------KADMDVETFYDGYLA 51 (418)
Q Consensus 16 w~v~~Gd~V~~g~~l~~vet~-------K~~~~i~a~~~G~v~ 51 (418)
++|+.|+.|+++|+|+|+-+. |+.=.|.|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 589999999999999999863 456679999999764
No 240
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=50.42 E-value=18 Score=34.93 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=12.6
Q ss_pred EEEecCCCccccCceeEEeccC
Q 014822 52 KIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 52 ~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
++++++|+.+..|++|+.+.-.
T Consensus 61 ~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 61 EWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred EEEeCCCCEecCCCEEEEEEEC
Confidence 3455566666666666666443
No 241
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=50.24 E-value=13 Score=38.42 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.8
Q ss_pred CCceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 7 TMTEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 7 ~~~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
-+..+-=+.++++.||.|++||+||.|=
T Consensus 376 ~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 376 PIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 3455566899999999999999999986
No 242
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=49.89 E-value=37 Score=35.69 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=40.5
Q ss_pred EcCCCCeeecCCeEEEE-Eecce-eeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 17 VRSEGDKLCKGESVVVV-ESDKA-DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~-~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++||+|..||+|..| ||.-. .+-+..+.+|.+..+.+.+|+ ..+.++|+.+..+.
T Consensus 121 ~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~ 179 (588)
T COG1155 121 AVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEG 179 (588)
T ss_pred ccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCC
Confidence 35899999999999988 55423 233556656766677777776 46778899886543
No 243
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=49.71 E-value=18 Score=35.16 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=41.5
Q ss_pred EEEEEEcCC----CCeeecCCeEEEEEecceeeEEecCCCeEEE-EEEecCCCccccCceeEEecc
Q 014822 12 KIVSWVRSE----GDKLCKGESVVVVESDKADMDVETFYDGYLA-KIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 12 ~i~~w~v~~----Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~-~~~~~~g~~v~~g~~l~~i~~ 72 (418)
.|..|.... |..|++||-+.-++=. .++.+--|.+ .+. ...+.+|+.|..|+.|+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~~ 287 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHITE 287 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCccC
Confidence 455665532 7899999999998864 4555555543 332 235789999999999987653
No 244
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.58 E-value=17 Score=35.17 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=13.3
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 556666666666666666655
No 245
>PRK05691 peptide synthase; Validated
Probab=49.53 E-value=4.5e+02 Score=35.81 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.0
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHh
Q 014822 383 MQVNVTADHRVIYGADLASFLQTLAKII 410 (418)
Q Consensus 383 m~lslt~DHRviDG~~aa~Fl~~l~~~l 410 (418)
..+-+++||-++||+-...|+++|..+.
T Consensus 1854 ~~l~~~~HHii~DG~S~~ll~~el~~~Y 1881 (4334)
T PRK05691 1854 HYFVLTLHHIVTEGWAMDIFARELGALY 1881 (4334)
T ss_pred EEEEEecchhhhhhhhHHHHHHHHHHHH
Confidence 3577999999999999999999998875
No 246
>PRK12467 peptide synthase; Provisional
Probab=49.05 E-value=2.2e+02 Score=38.24 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=39.4
Q ss_pred eeccCCchhHHHHHHhhhcCCcceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCccccc
Q 014822 198 SVVPFTTMQGAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVNSSCR 270 (418)
Q Consensus 198 ~~~~~s~~r~~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~ 270 (418)
...|+|..|+.+.-.-......+.|++..-+.+.. .+.. ..+-.|....+++||.||.++.
T Consensus 48 ~~~pLS~~Q~~lw~~~~~~~~~~~Yni~~~~~l~g-----------~lD~-~~L~~A~~~vv~rH~~LRt~f~ 108 (3956)
T PRK12467 48 ERIPLSYAQERQWFLWQLDPDSAAYNIPTALRLRG-----------ELDV-SALRRAFDALVARHESLRTRFV 108 (3956)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCceeccEEEEEeC-----------CCCH-HHHHHHHHHHHHHhhhheEEEE
Confidence 45799999997764333223445555555454422 1222 4566788899999999999985
No 247
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=48.93 E-value=18 Score=35.25 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=9.1
Q ss_pred EEEEchHHHHHHHHH
Q 014822 226 YTITTDALDALYKKI 240 (418)
Q Consensus 226 ~~vDvt~l~~~~~~~ 240 (418)
.+|+++.+.+..+.+
T Consensus 192 IeVEv~tleqa~ea~ 206 (284)
T PRK06096 192 IVVEADTPKEAIAAL 206 (284)
T ss_pred EEEECCCHHHHHHHH
Confidence 566666776665544
No 248
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=48.37 E-value=18 Score=34.88 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=10.8
Q ss_pred EecCCCccccCceeEEeccC
Q 014822 54 MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~~ 73 (418)
++++|+.+..|++|+.+.-+
T Consensus 61 ~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 61 AAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EcCCCCEecCCCEEEEEEEc
Confidence 44555555555555555433
No 249
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=48.25 E-value=18 Score=35.30 Aligned_cols=21 Identities=14% Similarity=0.533 Sum_probs=11.0
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 345555555555555555554
No 250
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.38 E-value=19 Score=35.04 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=12.6
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 346666666666666666654
No 251
>PRK04350 thymidine phosphorylase; Provisional
Probab=47.21 E-value=18 Score=37.95 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.0
Q ss_pred CCCCceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 5 SSTMTEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 5 ~~~~~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
|.-+..+-=+.++++.||.|++||+|+.|=
T Consensus 432 Gap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 432 GAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred CCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 444556666899999999999999999985
No 252
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.10 E-value=20 Score=34.70 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=8.9
Q ss_pred EEEEchHHHHHHHHHh
Q 014822 226 YTITTDALDALYKKIK 241 (418)
Q Consensus 226 ~~vDvt~l~~~~~~~k 241 (418)
.+++++.+.+..+.++
T Consensus 185 I~VEv~tleea~~A~~ 200 (273)
T PRK05848 185 IEIECESLEEAKNAMN 200 (273)
T ss_pred EEEEeCCHHHHHHHHH
Confidence 4556666666555443
No 253
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.93 E-value=20 Score=34.50 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=10.1
Q ss_pred EEEcCCCCeeecCCeEEEEE
Q 014822 15 SWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~ve 34 (418)
+|++++|+.|++||+|++++
T Consensus 60 ~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 60 EWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred EEEeCCCCEecCCCEEEEEE
Confidence 45555555555555555444
No 254
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.89 E-value=20 Score=35.01 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=12.5
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|+++.|+.|++||+|++++
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEE
Confidence 456666666666666665554
No 255
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.66 E-value=20 Score=34.90 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=10.3
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++||+|++++
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 344555555555555554444
No 256
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=46.38 E-value=21 Score=35.14 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=12.0
Q ss_pred EEEEcCCCCeeecCCeEEEEE
Q 014822 14 VSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 14 ~~w~v~~Gd~V~~g~~l~~ve 34 (418)
++|++++|+.|++|++|++++
T Consensus 80 v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 80 VEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 345666666666655555554
No 257
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.13 E-value=18 Score=37.93 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 5 SSTMTEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 5 ~~~~~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
|.-+..+-=+.++++.||.|++||+|+.|=
T Consensus 441 GA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 441 GAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 444556666889999999999999999985
No 258
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=46.01 E-value=19 Score=27.55 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=21.7
Q ss_pred CCCeEEEEEEecCCCccccCceeEEeccChh
Q 014822 45 FYDGYLAKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 45 ~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+..|+. ++.+.||.|..|++|+.|-...+
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCCh
Confidence 456654 78999999999999999965544
No 259
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=45.78 E-value=17 Score=37.56 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.1
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEecc
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVESDK 37 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K 37 (418)
+..+-=+.++++.||.|++||+|++|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455666899999999999999999986544
No 260
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=45.35 E-value=39 Score=34.36 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=7.1
Q ss_pred EecCCCccccCceeE
Q 014822 54 MVDEGGVASVGSAIA 68 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~ 68 (418)
.|++||.|..||+|.
T Consensus 208 ~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 208 VVKKGDVVKKGDLLI 222 (382)
T ss_pred EEccCCEEcCCCEEE
Confidence 344444444444444
No 261
>PRK12316 peptide synthase; Provisional
Probab=45.07 E-value=1.8e+02 Score=39.94 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.3
Q ss_pred EEEEeecccccchHHHHHHHHHHHHHhcC
Q 014822 384 QVNVTADHRVIYGADLASFLQTLAKIIED 412 (418)
Q Consensus 384 ~lslt~DHRviDG~~aa~Fl~~l~~~le~ 412 (418)
-+-+++||.++||+-.+-++++|.+..+.
T Consensus 4228 ~l~l~~HH~i~DGwS~~il~~el~~~Y~~ 4256 (5163)
T PRK12316 4228 HLIYTNHHILMDGWSNSQLLGEVLERYSG 4256 (5163)
T ss_pred EEEEEccceeeccccHHHHHHHHHHHhcC
Confidence 35689999999999999999999888754
No 262
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=44.96 E-value=14 Score=35.27 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred eeEEecCCCeEEEEEEecCCCccccCceeEEec
Q 014822 39 DMDVETFYDGYLAKIMVDEGGVASVGSAIALLA 71 (418)
Q Consensus 39 ~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~ 71 (418)
.--+..++-|...+.+++|||.|..||+|..=.
T Consensus 29 ~al~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK 61 (257)
T PF05896_consen 29 VALLPDDFPGMKPKMLVKEGDRVKAGQPLFEDK 61 (257)
T ss_pred EEEcCcccCCCCccEEeccCCEEeCCCeeEeeC
Confidence 334678899999999999999999999998753
No 263
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.45 E-value=23 Score=34.37 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=7.7
Q ss_pred ccChhHHHHHHHc
Q 014822 140 VASPYAKKLANEL 152 (418)
Q Consensus 140 ~asP~ar~la~e~ 152 (418)
...|-.|.+.+..
T Consensus 138 KT~PG~R~l~k~A 150 (281)
T PRK06106 138 KTTPGLRALEKYA 150 (281)
T ss_pred CCCCchhHHHHHH
Confidence 3456667666653
No 264
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.94 E-value=24 Score=34.23 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=11.4
Q ss_pred EecCCCccccCceeEEeccC
Q 014822 54 MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~~ 73 (418)
++++|+.+..|++|+.+.-+
T Consensus 63 ~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 63 RKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred EcCCCCEecCCCEEEEEEEC
Confidence 45556666666666666443
No 265
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=43.80 E-value=47 Score=35.64 Aligned_cols=55 Identities=27% Similarity=0.377 Sum_probs=40.6
Q ss_pred EcCCCCeeecCCeEEEEE-ecce--eeEEecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 17 VRSEGDKLCKGESVVVVE-SDKA--DMDVETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~ve-t~K~--~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.+++||.|..||.|+.|. +.-. .+-++.-..|++.+| +.+|+ ..+.++|+.+.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~ 180 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDE 180 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEcc
Confidence 688999999999999985 3333 344555568999654 55665 6778899999763
No 266
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=43.55 E-value=31 Score=32.43 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.9
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVE 34 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~ve 34 (418)
..|.|..+.+++|+.|..|++|+.|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46999999999999999999999874
No 267
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=42.96 E-value=36 Score=27.65 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=35.6
Q ss_pred CCCeeecCCeEEEEEec-ceeeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 20 EGDKLCKGESVVVVESD-KADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 20 ~Gd~V~~g~~l~~vet~-K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
......++.+|-++..- +..+.+ ....|.-.+..|++||.|..||.|+....
T Consensus 11 ~~K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 11 EHKELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred CccccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 33445566666666533 333333 44566667889999999999999998853
No 268
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.65 E-value=26 Score=33.71 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=7.8
Q ss_pred ccChhHHHHHHHc
Q 014822 140 VASPYAKKLANEL 152 (418)
Q Consensus 140 ~asP~ar~la~e~ 152 (418)
...|-.|.+.+..
T Consensus 122 Kt~Pg~r~l~k~A 134 (265)
T TIGR00078 122 KTTPGLRLLEKYA 134 (265)
T ss_pred CCChhhhHHHHHH
Confidence 3456667666653
No 269
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.60 E-value=25 Score=34.02 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=11.4
Q ss_pred EEecCCCccccCceeEEeccC
Q 014822 53 IMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 53 ~~~~~g~~v~~g~~l~~i~~~ 73 (418)
+++++|+.+..|++|+.+.-+
T Consensus 64 ~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 64 YAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred EEeCCCCEeCCCCEEEEEEec
Confidence 345555555555555555433
No 270
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=42.25 E-value=31 Score=43.07 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=27.6
Q ss_pred EEEcCCCCeeecCCeEEEE--Eecce--------------------eeEEecCCCeEEE
Q 014822 15 SWVRSEGDKLCKGESVVVV--ESDKA--------------------DMDVETFYDGYLA 51 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~v--et~K~--------------------~~~i~a~~~G~v~ 51 (418)
.+.|++||.|+.||+|+.+ |+.|. ..-+-|+.+|+|.
T Consensus 2525 ~l~v~~g~~v~~Gdilakipr~~~~t~DIT~GLpRv~eLFEar~pk~~a~isei~G~V~ 2583 (2836)
T PRK14844 2525 VLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYVA 2583 (2836)
T ss_pred eEeeccCceecccceeecccccccccCccCCCCccchheeeeecCCCceEEecCCcEEE
Confidence 3579999999999999987 44432 1226788889885
No 271
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=39.71 E-value=53 Score=33.35 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCc-cccCceeE
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGV-ASVGSAIA 68 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~-v~~g~~l~ 68 (418)
+|+-..+.|.|.... -+.+.+..--.|-|..+|+|.++.+..|.. |.+|+.+-
T Consensus 163 ~GTrl~i~v~Ek~~~------p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~Vk 216 (382)
T TIGR02876 163 RGTTLVIKVVEKQEP------KPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVK 216 (382)
T ss_pred EeEEEEEEEEecCCC------CCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEc
Confidence 455555555554321 111122334578899999999999999986 68888764
No 272
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=38.87 E-value=42 Score=39.66 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEecc
Q 014822 21 GDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 21 Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~ 72 (418)
|-.+.-|--.|..|-+.=-..++||..|.+.+.+++.|+-|.+|++-++++-
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEv 718 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEV 718 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeeheh
Confidence 4455667777777776666779999999999999999999999999988853
No 273
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=38.23 E-value=18 Score=35.74 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=14.7
Q ss_pred EEEcCCCCeeecCCeEEEEEe
Q 014822 15 SWVRSEGDKLCKGESVVVVES 35 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~vet 35 (418)
+++|++||.|++||.|+++..
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccccCCcCEECCCCeEEeEcC
Confidence 346777777777777777753
No 274
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=37.74 E-value=57 Score=25.53 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=27.2
Q ss_pred ceeeEEecCCCeEE----------------EEEEecCCCccccCceeEEeccChh
Q 014822 37 KADMDVETFYDGYL----------------AKIMVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 37 K~~~~i~a~~~G~v----------------~~~~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
+....+.+..+|++ .++++++|+.+..|++|+.+.-+..
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~a~ 71 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGPAR 71 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEEHH
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeCHH
Confidence 44555666666654 5678999999999999999975443
No 275
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=36.80 E-value=15 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=17.2
Q ss_pred ChhHHHHHHHcCCCccccc
Q 014822 142 SPYAKKLANELKVELARVV 160 (418)
Q Consensus 142 sP~ar~la~e~gidl~~v~ 160 (418)
-|.+|.||.++||++++|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 5899999999999999874
No 276
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.57 E-value=67 Score=34.44 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=41.6
Q ss_pred EcCCCCeeecCCeEEEE-EecceeeEE--ecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 17 VRSEGDKLCKGESVVVV-ESDKADMDV--ETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 17 ~v~~Gd~V~~g~~l~~v-et~K~~~~i--~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++||.|..||++++| ||.-.++.| ..-..|+|..+ +.+|+ ..+.++++.+...+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 48899999999999988 555555544 44469999764 56666 67788999987533
No 277
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=35.00 E-value=74 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=35.4
Q ss_pred EEEecceeeEEecCCCeEEEEE-------------------------------EecCCCccccCceeEEeccC
Q 014822 32 VVESDKADMDVETFYDGYLAKI-------------------------------MVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 32 ~vet~K~~~~i~a~~~G~v~~~-------------------------------~~~~g~~v~~g~~l~~i~~~ 73 (418)
.+..-+-..+|.|..+|+|..+ +.+.|+.|.+|++|+.|...
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~ 401 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAE 401 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecC
Confidence 3445677888999999999887 77889999999999999763
No 278
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=34.77 E-value=42 Score=33.69 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCCeeecCCeEEEEEecceeeE-EecCCCeEEEEEEecCCCccccCceeEEeccC
Q 014822 10 EGKIVSWVRSEGDKLCKGESVVVVESDKADMD-VETFYDGYLAKIMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~ 73 (418)
.+.+..|....+..|++||-+...+-.-+.+- ++++. .+ +..+++|+.|..||.|+.+...
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~~ 341 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGEP 341 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCCC
Confidence 35566677777889999999999986443333 44553 33 5578999999999999888643
No 279
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=34.08 E-value=34 Score=28.41 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=24.7
Q ss_pred ceEEEEEEEcCCCCeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeE
Q 014822 9 TEGKIVSWVRSEGDKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIA 68 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~ 68 (418)
..|+|.++..++ +|.-...|++..-..-+..==.| .++.+++|+.|..|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G--peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG--PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS--S-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC--CeEEEcCCCEEecCCccc
Confidence 567888876644 34445555544332111110111 134677888888888764
No 280
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=33.58 E-value=30 Score=30.28 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=26.0
Q ss_pred eeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeEEeccCh
Q 014822 23 KLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 23 ~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++|+-|+.++ .+|+..-..+.+|+.|..|+.|+.+.+..
T Consensus 75 ~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 75 LLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp EE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred EECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecC
Confidence 455666666664 45777778999999999999999997543
No 281
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=33.46 E-value=52 Score=38.92 Aligned_cols=37 Identities=5% Similarity=0.097 Sum_probs=30.8
Q ss_pred EEEcCCCCeeecCCeEEEEEe--------cceeeEEecCCCeEEE
Q 014822 15 SWVRSEGDKLCKGESVVVVES--------DKADMDVETFYDGYLA 51 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~vet--------~K~~~~i~a~~~G~v~ 51 (418)
.++|+.||.|++||.|+|+.. .|+...|-|..+|.|.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 468999999999999999974 4556789999999753
No 282
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=33.32 E-value=58 Score=41.03 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=0.0
Q ss_pred EEcCCCCeeecCCeEEEE--Eecce----------------------eeEEecCCCeEEE--------------------
Q 014822 16 WVRSEGDKLCKGESVVVV--ESDKA----------------------DMDVETFYDGYLA-------------------- 51 (418)
Q Consensus 16 w~v~~Gd~V~~g~~l~~v--et~K~----------------------~~~i~a~~~G~v~-------------------- 51 (418)
+.|++||.|+.||+|+.+ ++.|. ..-+-|+.+|+|.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~~~~ 2695 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRS 2695 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCCCce
Q ss_pred ---------EEEecCCCccccCcee
Q 014822 52 ---------KIMVDEGGVASVGSAI 67 (418)
Q Consensus 52 ---------~~~~~~g~~v~~g~~l 67 (418)
+++|++||.|..|+.|
T Consensus 2696 ~~y~v~~~~~~~v~~gd~v~~G~~l 2720 (2890)
T PRK09603 2696 MDYFVDKGKQILVHADEFVHAGEAM 2720 (2890)
T ss_pred eEEEccCCceeeecCCCEEccCCCc
No 283
>PRK09294 acyltransferase PapA5; Provisional
Probab=31.92 E-value=37 Score=34.46 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.4
Q ss_pred EEEeecccccchHHHHHHHHHHHHHh
Q 014822 385 VNVTADHRVIYGADLASFLQTLAKII 410 (418)
Q Consensus 385 lslt~DHRviDG~~aa~Fl~~l~~~l 410 (418)
+.+.+||-++||+.+..|+++|..+.
T Consensus 113 l~l~~hH~i~DG~S~~~ll~el~~~Y 138 (416)
T PRK09294 113 VTLYIHHSIADAHHSASLLDELWSRY 138 (416)
T ss_pred EEEEeccEeEccccHHHHHHHHHHHH
Confidence 56889999999999999999998765
No 284
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.70 E-value=50 Score=32.22 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=8.3
Q ss_pred EEEEEchHHHHHHHHH
Q 014822 225 GYTITTDALDALYKKI 240 (418)
Q Consensus 225 ~~~vDvt~l~~~~~~~ 240 (418)
..+|.++.+.+..+.+
T Consensus 199 kIeVEv~tleea~~a~ 214 (290)
T PRK06559 199 MVEVEVESLAAAEEAA 214 (290)
T ss_pred eEEEECCCHHHHHHHH
Confidence 3555555655554443
No 285
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=30.39 E-value=82 Score=24.41 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014822 230 TDALDALYKKIKSKGVTMTALLAKATALAL 259 (418)
Q Consensus 230 vt~l~~~~~~~k~~~~s~~~~~~~Av~~Al 259 (418)
++.|.++++-.++++++|-.+++||+..|-
T Consensus 51 ~~sl~kL~~La~~N~v~feeLc~YAL~~a~ 80 (82)
T PF11020_consen 51 MDSLSKLYKLAKENNVSFEELCVYALGVAQ 80 (82)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 344555566667779999999999988763
No 286
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=30.28 E-value=48 Score=33.14 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=7.1
Q ss_pred cChhHHHHHHH
Q 014822 141 ASPYAKKLANE 151 (418)
Q Consensus 141 asP~ar~la~e 151 (418)
..|-.|.+++.
T Consensus 138 t~Pg~r~l~k~ 148 (343)
T PRK08662 138 VHPAIAPMMDR 148 (343)
T ss_pred CCHhHHHHHHh
Confidence 45777777664
No 287
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=29.95 E-value=46 Score=34.03 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=24.1
Q ss_pred CceEEEEEEEcCCCCeeecCCeEEEEEe
Q 014822 8 MTEGKIVSWVRSEGDKLCKGESVVVVES 35 (418)
Q Consensus 8 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet 35 (418)
+..+.=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5566668899999999999999998865
No 288
>PRK12316 peptide synthase; Provisional
Probab=29.66 E-value=5.2e+02 Score=35.82 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=25.1
Q ss_pred EEEEeecccccchHHHHHHHHHHHHHhc
Q 014822 384 QVNVTADHRVIYGADLASFLQTLAKIIE 411 (418)
Q Consensus 384 ~lslt~DHRviDG~~aa~Fl~~l~~~le 411 (418)
-+-+++||-++||+-..-|+++|.++..
T Consensus 176 ~l~l~~HHii~Dg~S~~~l~~el~~~Y~ 203 (5163)
T PRK12316 176 VLLLTLHHIVSDGWSMNVLIEEFSRFYS 203 (5163)
T ss_pred EEEEcccceeechhHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764
No 289
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=29.46 E-value=1.5e+02 Score=26.83 Aligned_cols=63 Identities=22% Similarity=0.397 Sum_probs=39.5
Q ss_pred ceEEEEEEEcCCCCeee--------cCCe-EEEEEecceeeEEecCCCeEE-EEE--EecCCCccccCceeEEecc
Q 014822 9 TEGKIVSWVRSEGDKLC--------KGES-VVVVESDKADMDVETFYDGYL-AKI--MVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 9 ~~g~i~~w~v~~Gd~V~--------~g~~-l~~vet~K~~~~i~a~~~G~v-~~~--~~~~g~~v~~g~~l~~i~~ 72 (418)
-+|+|.+....+|+... .++- ++.+||+.-.+-+.. ..|.+ .++ .+++|+.+..|+.++.+.-
T Consensus 79 ~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~f 153 (189)
T TIGR00164 79 AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRF 153 (189)
T ss_pred cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEec
Confidence 36888888888887433 3443 357777643333222 22332 233 5578999999999999864
No 290
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.89 E-value=70 Score=27.00 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=30.6
Q ss_pred ChhHHHHHHHcCCCccccccCCCCCccchhhHHHHHHh
Q 014822 142 SPYAKKLANELKVELARVVGSGPKGRIVAKDVEAEAAA 179 (418)
Q Consensus 142 sP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~~~~~ 179 (418)
.-..+.-|++.|++..-|+-+| +.||++||+.+...
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~A 82 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQRA 82 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHHH
Confidence 4467889999999999999887 67999999988654
No 291
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=27.62 E-value=36 Score=31.83 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=25.3
Q ss_pred EEEcCCCCeeecCCeEEEEEecceeeE
Q 014822 15 SWVRSEGDKLCKGESVVVVESDKADMD 41 (418)
Q Consensus 15 ~w~v~~Gd~V~~g~~l~~vet~K~~~~ 41 (418)
.|+|..|..+++=|+.|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 589999999999999999999998876
No 292
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=27.35 E-value=65 Score=32.38 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=13.4
Q ss_pred EecCCCccccCceeEEeccCh
Q 014822 54 MVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+++|+.+..|++|+.+.-+-
T Consensus 76 a~~eG~~v~~gepvl~i~G~~ 96 (352)
T PRK07188 76 YLKDGDIINPFETVLEIEGPY 96 (352)
T ss_pred EcCCCCEecCCCEEEEEEEcH
Confidence 556666666677776665443
No 293
>PRK11637 AmiB activator; Provisional
Probab=27.22 E-value=69 Score=32.95 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=16.7
Q ss_pred EecCCCccccCceeEEeccCh
Q 014822 54 MVDEGGVASVGSAIALLAESE 74 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~~~ 74 (418)
.+.+|+.|..|++|+.+...+
T Consensus 382 ~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 382 LVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred CCCCcCEECCCCeEEeecCCC
Confidence 477899999999999886543
No 294
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=27.02 E-value=1.8e+02 Score=20.21 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=32.7
Q ss_pred CCcceEEEEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCcCc
Q 014822 217 LAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVQHPVVN 266 (418)
Q Consensus 217 ~~iP~~~~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~~~P~ln 266 (418)
...|+|++..+-++-.- +.+..+.++-|++.-+++++-.++.+...++
T Consensus 2 r~~~~f~lRlP~~l~~~--lk~~A~~~gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEK--LKERAEENGRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHH--HHHHHHHTTS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHH--HHHHHHHhCCChHHHHHHHHHHHHhccccCC
Confidence 45678877665554333 3334445689999999999999998876553
No 295
>PRK02259 aspartoacylase; Provisional
Probab=26.18 E-value=31 Score=33.50 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=36.1
Q ss_pred EcCCC--CeeecCCeEEEEEecceeeEEecCCCeEEEEEEecCCCccccCceeE
Q 014822 17 VRSEG--DKLCKGESVVVVESDKADMDVETFYDGYLAKIMVDEGGVASVGSAIA 68 (418)
Q Consensus 17 ~v~~G--d~V~~g~~l~~vet~K~~~~i~a~~~G~v~~~~~~~g~~v~~g~~l~ 68 (418)
.++.| +.|++||+|+.. .+.-++.++++.+|+. +++.|...+..|..++
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 45557 559999999988 5666888999998887 5666666666665544
No 296
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=25.17 E-value=1.2e+03 Score=27.69 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred hcCCCCHHHHHHHHHHHHHhhCCcCcccccCCCeEEEcCceeEEEEEEeCCCeEEeE-EeCCCCCCHHHHHHHHHHHHHH
Q 014822 241 KSKGVTMTALLAKATALALVQHPVVNSSCRDGNSFIYNSSINIAVAVAVDGGLITPV-LQDADKADIYTLSRKWKELVDK 319 (418)
Q Consensus 241 k~~~~s~~~~~~~Av~~Al~~~P~ln~~~~~~~~i~~~~~i~i~~av~~~~gl~~pv-i~~~~~~~l~~i~~~~~~~~~~ 319 (418)
++.++|++.+++-|.+..|.+ +.+. +++-+|+.+.... ..+|+ +......+|.++.+++++....
T Consensus 42 ~~~~~t~~~~l~aa~~~lL~r-------~sg~------~dv~iG~~~~~R~-~~lplr~~~~~~~t~~~~l~~~~~~~~~ 107 (1389)
T TIGR03443 42 AGGGSTPFIILLAAFAALVYR-------LTGD------EDIVLGTSSNKSG-RPFVLRLNITPELSFLQLYAKVSEEEKE 107 (1389)
T ss_pred hhcCCCHHHHHHHHHHHHHHH-------HcCC------CceEEEeeeCCCC-ceEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 445999999999988888854 3322 2334555543322 23333 5667888999999988876655
Q ss_pred HHh
Q 014822 320 ARA 322 (418)
Q Consensus 320 a~~ 322 (418)
+..
T Consensus 108 ~~~ 110 (1389)
T TIGR03443 108 GAS 110 (1389)
T ss_pred HHh
Confidence 544
No 297
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=24.14 E-value=64 Score=27.81 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=23.9
Q ss_pred ccChhHHHHHHHcCCCccccccCCCCCccchhhHHH
Q 014822 140 VASPYAKKLANELKVELARVVGSGPKGRIVAKDVEA 175 (418)
Q Consensus 140 ~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~ 175 (418)
.+.|.+.+.++++|||++.- ..-+|+.+|+..
T Consensus 44 ~~~~~a~~~l~~~Gid~~~h----~s~~lt~~~~~~ 75 (144)
T PRK11391 44 PADATAADVAANHGVSLEGH----AGRKLTAEMARN 75 (144)
T ss_pred CCCHHHHHHHHHcCCCcCCC----ccCcCCHHHHhh
Confidence 46799999999999998642 223577777763
No 298
>PRK10126 tyrosine phosphatase; Provisional
Probab=23.83 E-value=57 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=23.9
Q ss_pred ccChhHHHHHHHcCCCccccccCCCCCccchhhHHH
Q 014822 140 VASPYAKKLANELKVELARVVGSGPKGRIVAKDVEA 175 (418)
Q Consensus 140 ~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~ 175 (418)
.+.|.+.+.++++|||++.-. .-+++.+|++.
T Consensus 44 ~~~~~a~~~l~~~Gid~~~h~----sr~lt~~~~~~ 75 (147)
T PRK10126 44 GADPTAISVAAEHQLSLEGHC----ARQISRRLCRN 75 (147)
T ss_pred CCCHHHHHHHHHcCCCcCCCc----cccCCHHHhcc
Confidence 478999999999999987422 23577777753
No 299
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=23.71 E-value=80 Score=30.29 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=11.1
Q ss_pred EEecCCCccccCceeEEeccC
Q 014822 53 IMVDEGGVASVGSAIALLAES 73 (418)
Q Consensus 53 ~~~~~g~~v~~g~~l~~i~~~ 73 (418)
..+.+|+.+..|++++.+.-+
T Consensus 54 ~~~~eG~~v~~g~~vl~i~G~ 74 (281)
T cd00516 54 LAVPEGTVVEPGEPLLTIEGP 74 (281)
T ss_pred EECCCCCEecCCCEEEEEEEc
Confidence 344555555555555555433
No 300
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.55 E-value=2e+02 Score=18.20 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.8
Q ss_pred EEEEEEchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 014822 224 VGYTITTDALDALYKKIKSKGVTMTALLAKATALALV 260 (418)
Q Consensus 224 ~~~~vDvt~l~~~~~~~k~~~~s~~~~~~~Av~~Al~ 260 (418)
++..++-+....+.+..++.|.|...++-.|+..-+.
T Consensus 2 iti~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred eEEEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4556666666666666666699999999888877664
No 301
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=22.67 E-value=65 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=24.6
Q ss_pred ccChhHHHHHHHcCCCccccccCCCCCccchhhHHHH
Q 014822 140 VASPYAKKLANELKVELARVVGSGPKGRIVAKDVEAE 176 (418)
Q Consensus 140 ~asP~ar~la~e~gidl~~v~gtG~~Gri~~~DV~~~ 176 (418)
...|.+.++++++|||++.. .-+++.+|+..+
T Consensus 41 ~~~~~a~~~l~~~Gid~~~~-----~~~l~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH-----ASQLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHcCcCccce-----eccCCHHHHHhC
Confidence 47899999999999998632 227888887543
No 302
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=22.04 E-value=89 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCeEEEEEEecC-CCccccCceeEEeccCh
Q 014822 46 YDGYLAKIMVDE-GGVASVGSAIALLAESE 74 (418)
Q Consensus 46 ~~G~v~~~~~~~-g~~v~~g~~l~~i~~~~ 74 (418)
.-|.|..+.... |+.|..|++|+.|+...
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 368888876666 99999999999998654
No 303
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=21.68 E-value=2.1e+02 Score=26.22 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=34.8
Q ss_pred eEEEEEEEcCCCCeeec--------CC-eEEEEEecce-eeEEecCCCeEE-EEE--EecCCCccccCceeEEecc
Q 014822 10 EGKIVSWVRSEGDKLCK--------GE-SVVVVESDKA-DMDVETFYDGYL-AKI--MVDEGGVASVGSAIALLAE 72 (418)
Q Consensus 10 ~g~i~~w~v~~Gd~V~~--------g~-~l~~vet~K~-~~~i~a~~~G~v-~~~--~~~~g~~v~~g~~l~~i~~ 72 (418)
+|+|.++...+|+.... ++ .+..+||++. .+.+ ....|.+ .+| .+++|+.+..|+.++.+.-
T Consensus 99 ~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~-~~i~~~~~r~I~~~~~~g~~v~kGe~~G~f~f 173 (206)
T PRK05305 99 SGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGV-VQIAGLIARRIVCYVKEGDEVERGERFGLIRF 173 (206)
T ss_pred cCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEE-EEeCeEEccEEEEeCCCCCEEccCcEEeEEec
Confidence 67888888888875443 22 3335566421 1221 1222222 222 4567888888888888753
No 304
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=20.57 E-value=98 Score=30.33 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=14.3
Q ss_pred EecCCCccccCceeEEeccChh
Q 014822 54 MVDEGGVASVGSAIALLAESED 75 (418)
Q Consensus 54 ~~~~g~~v~~g~~l~~i~~~~~ 75 (418)
.+++|+.|..|++|+++.-+..
T Consensus 57 ~~~dG~~v~~g~~i~~i~G~~~ 78 (302)
T cd01571 57 ALPEGTIFNPKEPVLRIEGPYQ 78 (302)
T ss_pred EeCCCCEECCCCcEEEEEeCHH
Confidence 3667777777777777765433
Done!