Query 014824
Match_columns 418
No_of_seqs 162 out of 441
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 18:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.5E-28 8.7E-33 190.5 6.4 60 244-304 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 90.6 0.61 2.1E-05 36.9 6.3 51 243-299 12-62 (79)
3 2hzd_A Transcriptional enhance 89.3 0.27 9.3E-06 40.2 3.4 56 248-305 5-77 (82)
4 2yum_A ZZZ3 protein, zinc fing 87.0 1.1 3.7E-05 34.1 5.3 53 248-303 7-62 (75)
5 2cu7_A KIAA1915 protein; nucle 86.2 1.8 6.1E-05 32.9 6.1 50 247-302 7-56 (72)
6 1x41_A Transcriptional adaptor 82.8 3.7 0.00013 30.1 6.4 51 246-301 5-55 (60)
7 1ity_A TRF1; helix-turn-helix, 78.9 7.3 0.00025 29.1 7.0 55 242-299 3-57 (69)
8 2cqq_A RSGI RUH-037, DNAJ homo 75.4 7.1 0.00024 30.4 6.2 48 249-302 8-58 (72)
9 2cqr_A RSGI RUH-043, DNAJ homo 74.2 12 0.00042 29.2 7.3 53 246-301 15-68 (73)
10 2iw5_B Protein corest, REST co 73.9 7.1 0.00024 37.2 6.9 54 245-304 129-182 (235)
11 2xag_B REST corepressor 1; ami 73.3 4.9 0.00017 41.4 6.2 52 247-304 378-429 (482)
12 2elk_A SPCC24B10.08C protein; 69.2 6.2 0.00021 28.9 4.3 46 250-300 10-56 (58)
13 3sjm_A Telomeric repeat-bindin 64.5 19 0.00066 27.0 6.3 47 247-296 9-55 (64)
14 1guu_A C-MYB, MYB proto-oncoge 64.2 19 0.00064 25.2 5.9 46 249-299 3-48 (52)
15 2d9a_A B-MYB, MYB-related prot 63.1 27 0.00093 25.1 6.8 50 245-299 4-53 (60)
16 1wgx_A KIAA1903 protein; MYB D 55.4 25 0.00085 27.8 5.7 51 251-304 10-61 (73)
17 1gvd_A MYB proto-oncogene prot 53.0 39 0.0013 23.6 6.0 46 249-299 3-48 (52)
18 1w0t_A Telomeric repeat bindin 51.3 53 0.0018 23.2 6.5 48 249-299 2-49 (53)
19 2dim_A Cell division cycle 5-l 45.8 67 0.0023 23.8 6.6 48 247-299 7-54 (70)
20 2eqr_A N-COR1, N-COR, nuclear 43.2 20 0.00069 26.4 3.3 45 245-295 8-52 (61)
21 2aje_A Telomere repeat-binding 41.7 64 0.0022 26.9 6.4 52 242-296 6-59 (105)
22 2yqk_A Arginine-glutamic acid 37.2 29 0.00098 25.9 3.3 53 246-306 6-58 (63)
23 2cjj_A Radialis; plant develop 36.7 41 0.0014 27.4 4.4 47 250-301 9-58 (93)
24 2din_A Cell division cycle 5-l 35.2 82 0.0028 23.1 5.5 47 248-301 8-54 (66)
25 2roh_A RTBP1, telomere binding 28.1 1.7E+02 0.0057 25.1 7.0 56 242-303 24-81 (122)
26 1gv2_A C-MYB, MYB proto-oncoge 27.1 1.4E+02 0.0048 23.3 6.0 46 249-299 4-49 (105)
27 3osg_A MYB21; transcription-DN 26.1 1.5E+02 0.0051 24.2 6.2 50 245-300 7-56 (126)
28 2crg_A Metastasis associated p 23.1 74 0.0025 24.3 3.5 47 245-296 4-50 (70)
29 4eef_G F-HB80.4, designed hema 22.1 26 0.00088 28.2 0.8 45 250-297 21-66 (74)
30 2k9n_A MYB24; R2R3 domain, DNA 22.0 1.9E+02 0.0065 22.9 5.9 45 250-299 2-46 (107)
31 2dms_A Homeobox protein OTX2; 21.7 2.6E+02 0.0087 20.9 6.4 59 242-303 4-62 (80)
32 2juh_A Telomere binding protei 21.0 1.8E+02 0.006 24.9 5.8 53 242-297 10-64 (121)
33 2k9n_A MYB24; R2R3 domain, DNA 20.6 1.6E+02 0.0053 23.4 5.1 61 230-300 38-98 (107)
34 2lm1_A Lysine-specific demethy 20.6 44 0.0015 26.8 1.9 33 254-287 44-80 (107)
35 2jxj_A Histone demethylase jar 20.5 24 0.00082 27.8 0.3 32 255-287 37-72 (96)
36 1gv2_A C-MYB, MYB proto-oncoge 20.5 1.9E+02 0.0066 22.5 5.6 60 230-299 41-100 (105)
37 1qgp_A Protein (double strande 20.2 1.2E+02 0.004 23.1 4.1 44 253-299 12-55 (77)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.5e-28 Score=190.45 Aligned_cols=60 Identities=47% Similarity=0.790 Sum_probs=57.2
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014824 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (418)
Q Consensus 244 s~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~ 304 (418)
+.+|+||+||+|||++||+||++|| .|+|+||+||++|+|+|||++||||||||||+..+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999 79999999999999999999999999999998754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.55 E-value=0.61 Score=36.85 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=41.5
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 243 rs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
+.....+-.||+|=+.+|++||+..|+- =+.|-+.|+ +=|..+|+.|-++|
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence 3344556789999999999999999943 367777764 79999999999888
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.25 E-value=0.27 Score=40.21 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=37.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh---c-C-------------CCCccHHHHHHhhhhhhccccC
Q 014824 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT 305 (418)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel---M-n-------------V~GLTr~hVkSHLQKYRl~k~t 305 (418)
..-+|.++|-..|++|++.+- .. -+=|.+|.. | | -+-=|+.+|+||||.-|..+..
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 456899999999999999875 11 111222311 1 1 1456889999999988765543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.97 E-value=1.1 Score=34.05 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCccHHHHHHhhhhhhccc
Q 014824 248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTVK 303 (418)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~GLTr~hVkSHLQKYRl~k 303 (418)
.+-.||+|=+++|++||+.+| .+...| +.|-+.| +|=|-.+|+.|-|+|-...
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 345799999999999999999 232222 3455554 6899999999999996543
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.19 E-value=1.8 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcc
Q 014824 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (418)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (418)
..+-.||+|=++.|++||+.+|- .=+.|-..| +|=|..+|+.|.++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999992 446676654 789999999999988543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=82.81 E-value=3.7 Score=30.14 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhc
Q 014824 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (418)
Q Consensus 246 kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl 301 (418)
...|-.||+|=.+++++||+.+| . -.=+.|-+.| ++=|-.+|+.|-++|=.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 1 1236677766 67899999999888743
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=78.90 E-value=7.3 Score=29.12 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=43.6
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
+...++.|-.||+|=-++.+++|+.+|. -.=+.|.+.|...|=|-.+|+-+-..|
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 3456778889999999999999999991 134778888876688999998776655
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.42 E-value=7.1 Score=30.38 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=38.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHhhhhhhcc
Q 014824 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRTV 302 (418)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (418)
+-.||.|=..+|+.|+..+++ -+|. +|-+.| |=|-++|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 3454 466666 57999999998887554
No 9
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=74.15 E-value=12 Score=29.20 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhhhhhc
Q 014824 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRT 301 (418)
Q Consensus 246 kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQKYRl 301 (418)
+..+-.||.|=..+|++||..+|. -+|.+--.+ .-|+|=|-.+|+.|-+.+..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344456999999999999999982 377655443 24579999999999887754
No 10
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=73.92 E-value=7.1 Score=37.21 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014824 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (418)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~ 304 (418)
..+..-+||+|=+..|++|+...|- -=..|-++ |.+=|..+|+.|..+||....
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 4466779999999999999999992 25677776 578999999999999986533
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=73.26 E-value=4.9 Score=41.44 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014824 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (418)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~ 304 (418)
+..-+||+|=|..|++||.+.|- -=+.|-+.++-. |..+|++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 45689999999999999999982 357788886654 99999999999987544
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=69.19 E-value=6.2 Score=28.89 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014824 250 MRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (418)
Q Consensus 250 lrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (418)
-.||+|=.+++++||++.| +- =+.|-+.|+. +=|..+++.|-++|-
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 3699999999999999999 33 3556666532 678899998887763
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=64.50 E-value=19 Score=27.05 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhh
Q 014824 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (418)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHL 296 (418)
+.|-.||+|=-++.+++|++.|. -.=+.|.+.+.+.|=|-.+++-.-
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 34567999999999999999992 124678888887888888887543
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=64.23 E-value=19 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
|-.||+|=..+++++|++.|. ..=+.|.+.| +|=|-.+|+-+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2356777765 588899998877665
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=63.05 E-value=27 Score=25.15 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
....|-.||+|=.++++++|+++|. -.=+.|.+.| +|=|-.+|+.+-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4456678999999999999999992 1235666665 688999998887766
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=55.39 E-value=25 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhhhhhcccc
Q 014824 251 RWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRTVKT 304 (418)
Q Consensus 251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQKYRl~k~ 304 (418)
.||.+=..+|..|+..++ +.+|.+-..+ .-|+|=|.++|..|-+.....+.
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 599999999999999987 4477755442 34678999999988666544333
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=53.01 E-value=39 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
|-.||+|=..+++++|++.|. ..=+.|.+.| +|=|-.+|+.+-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999992 1235666665 688889998877766
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=51.34 E-value=53 Score=23.18 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
|-.||+|=.+..+++|+..|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 134678888865577888888665544
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.84 E-value=67 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
..|-.||+|=-++++++|.++|- ..=+.|-+.|+ +=|-.+|+-+-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 44568999999999999999991 23477777775 88999999877776
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.15 E-value=20 Score=26.45 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=34.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHh
Q 014824 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (418)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSH 295 (418)
.|+..-.||+|=|+.|++|+.+.|- -=..|-++ |++=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 3456678999999999999999982 23566655 468888888754
No 21
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=41.69 E-value=64 Score=26.91 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=39.0
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHhh
Q 014824 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHL 296 (418)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVkSHL 296 (418)
....++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|--+||-+.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence 3457888999999999999999999993 12457777652 3788988998643
No 22
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.15 E-value=29 Score=25.94 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhccccCC
Q 014824 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTD 306 (418)
Q Consensus 246 kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~td 306 (418)
+..+-.||+|=+.+|.+|+.+.| -+ =..|.+.| |+.-|..+|.. -|=+.|+++
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~---fYY~wKkt~ 58 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELIT---FYYYWKKTS 58 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHH---HHHHHHCSS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHH---HHhcccCCC
Confidence 34456899999999999999999 22 23444311 56777777754 444445544
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=36.72 E-value=41 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHhhhhhhc
Q 014824 250 MRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRT 301 (418)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl 301 (418)
-.||.|=...|++||..+| . -+|. +|-+.| +|=|-++|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3699999999999999998 2 2554 455554 69999999999888754
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.16 E-value=82 Score=23.05 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhc
Q 014824 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (418)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl 301 (418)
.+-.||.|=..+++++|+.+|- .=..|-++| |=|-.+|+-|-+.|-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 3457999999999999999983 346676644 5899999999888744
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=28.07 E-value=1.7e+02 Score=25.07 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=41.5
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCccHHHHHHhhhhhhccc
Q 014824 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM--DVKDLTLAHVKSHLQMYRTVK 303 (418)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelM--nV~GLTr~hVkSHLQKYRl~k 303 (418)
+...++.|-.||+|=-+..+++|+++|. -.=+.|++.+ ..++=|--++|- |||...
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKd---RWrnll 81 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKD---KWKTLV 81 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 3457788899999999999999999992 1235677754 347888888884 455433
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=27.11 E-value=1.4e+02 Score=23.32 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
+-.||+|=-++++++|+..|. -.=+.|-+.| +|=|..+|+.+-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999993 1245677776 688999998776665
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=26.15 E-value=1.5e+02 Score=24.21 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014824 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (418)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (418)
....|-.||+|=-++.+++|++.|. .=+.|-+.| +|=|..+|..+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4556678999999999999999993 456777765 4778888887766653
No 28
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.14 E-value=74 Score=24.25 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhh
Q 014824 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (418)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHL 296 (418)
.|+..-.||+|=+..|.+|+...| -+ =..|-+. -|+.-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 456667899999999999999999 22 2444431 16778888877654
No 29
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=22.09 E-value=26 Score=28.24 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhh
Q 014824 250 MRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQ 297 (418)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQ 297 (418)
-.||.+=...|..|+...+ +-+|.+--.+ --|+|=|.+.|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3699999999999998876 4567654433 2357999999999866
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.98 E-value=1.9e+02 Score=22.86 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 250 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
-.||+|=-++++++|+..|. -.=+.|-+.|+ |=|..+|.-+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 47999999999999999993 23466777774 77888887655444
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.66 E-value=2.6e+02 Score=20.90 Aligned_cols=59 Identities=15% Similarity=-0.020 Sum_probs=41.7
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhccc
Q 014824 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303 (418)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k 303 (418)
....|+.|.++|.+--.. ++.+.... ...+...+.++...=||+..+|+.=.|.-|...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 62 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDV-LEALFAKT--RYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62 (80)
T ss_dssp CCCCCCCCSSCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCCCCHHHHHH-HHHHHHcc--CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHh
Confidence 456788899999874443 34444443 356777777777778899999998888776643
No 32
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.98 E-value=1.8e+02 Score=24.86 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHhhh
Q 014824 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQ 297 (418)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVkSHLQ 297 (418)
+.+.++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|--+||-+..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWr 64 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWK 64 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHH
Confidence 4457888999999999999999999992 12357777764 37888888886443
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=20.62 E-value=1.6e+02 Score=23.39 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=43.1
Q ss_pred cchhhccccCccccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014824 230 LMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (418)
Q Consensus 230 ~~r~~~~~~~p~krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (418)
-.|.||...+.. ...+-.||+|=...++++|.++|. .=..|-+.| +|=|..+|+.+-..+.
T Consensus 38 qcr~Rw~~~L~p----~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 38 QCRERWNNYINP----ALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp HHHHHHHHHSSS----CCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 456676543221 122457999999999999999993 235666665 7999999998876554
No 34
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.59 E-value=44 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc
Q 014824 254 TTLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (418)
Q Consensus 254 ~ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (418)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~ 80 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSS 80 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCC
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCC
Confidence 378988876 678999887654 467889999763
No 35
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=20.47 E-value=24 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc
Q 014824 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (418)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (418)
+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~ 72 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPG 72 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSC
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCc
Confidence 67887765 778999887654 467888998653
No 36
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=20.47 E-value=1.9e+02 Score=22.50 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=42.1
Q ss_pred cchhhccccCccccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 230 LMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 230 ~~r~~~~~~~p~krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
-.|.||...+. ....+-.||+|=...++++|.++|. .=..|-+. ++|=|..+|+.+-..+
T Consensus 41 qcr~Rw~~~l~----p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 41 QCRERWHNHLN----PEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp HHHHHHHHTTC----CCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhccC----CcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 45667654332 1123457999999999999999993 23456665 4899999999886544
No 37
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.17 E-value=1.2e+02 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014824 253 TTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (418)
Q Consensus 253 T~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (418)
++++..+-++++...|--+..+.+.|.+.++|+ +..|..||.+-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs---~~tV~~~L~~L 55 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTP---KKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC---HHHHHHHHHHH
Confidence 677888899999999944678999999999855 56677776655
Done!