Query 014826
Match_columns 418
No_of_seqs 139 out of 2407
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.7E-28 1E-32 255.9 15.1 350 8-394 83-441 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.9E-27 4.1E-32 251.4 14.6 357 8-396 202-586 (968)
3 KOG4194 Membrane glycoprotein 99.9 6.1E-26 1.3E-30 208.8 3.0 330 14-395 98-430 (873)
4 PLN03210 Resistant to P. syrin 99.9 1.3E-22 2.9E-27 215.3 18.5 339 13-396 553-908 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 3.3E-25 7.1E-30 205.7 -5.1 329 10-396 24-377 (1255)
6 PLN03210 Resistant to P. syrin 99.9 7.6E-22 1.7E-26 209.5 17.0 315 9-374 579-910 (1153)
7 KOG4194 Membrane glycoprotein 99.9 4.3E-24 9.4E-29 196.7 -0.7 347 5-406 112-463 (873)
8 KOG0444 Cytoskeletal regulator 99.8 3.1E-23 6.7E-28 192.6 -2.6 332 13-394 2-352 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 2E-21 4.4E-26 171.7 -3.2 227 10-272 60-308 (565)
10 KOG0618 Serine/threonine phosp 99.7 5.1E-20 1.1E-24 178.4 -5.7 104 14-126 41-144 (1081)
11 KOG0472 Leucine-rich repeat pr 99.6 1E-18 2.2E-23 154.8 -7.6 265 48-393 45-309 (565)
12 KOG0618 Serine/threonine phosp 99.6 2E-17 4.4E-22 160.6 -3.4 273 10-302 13-304 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.6 2.9E-15 6.4E-20 138.6 5.7 273 8-295 13-318 (319)
14 PRK15387 E3 ubiquitin-protein 99.5 2.9E-14 6.3E-19 142.2 10.4 112 20-155 203-314 (788)
15 cd00116 LRR_RI Leucine-rich re 99.5 3.5E-15 7.5E-20 138.2 2.7 259 22-295 2-289 (319)
16 KOG4237 Extracellular matrix p 99.5 8.2E-16 1.8E-20 136.3 -5.0 137 10-155 61-200 (498)
17 KOG4658 Apoptotic ATPase [Sign 99.5 2.9E-14 6.3E-19 145.1 4.5 108 45-153 542-652 (889)
18 PRK15387 E3 ubiquitin-protein 99.4 3.8E-13 8.2E-18 134.3 10.8 121 8-155 214-334 (788)
19 KOG4658 Apoptotic ATPase [Sign 99.4 1.7E-13 3.8E-18 139.5 5.5 112 14-129 541-652 (889)
20 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 1E-17 134.4 7.4 228 48-368 199-426 (754)
21 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.7E-19 114.5 -5.3 108 44-153 29-137 (264)
22 KOG4237 Extracellular matrix p 99.3 3.5E-14 7.6E-19 126.0 -3.7 265 3-295 75-357 (498)
23 KOG4341 F-box protein containi 99.3 1.1E-13 2.4E-18 123.9 -1.1 292 19-398 139-443 (483)
24 PRK15370 E3 ubiquitin-protein 99.3 4E-12 8.6E-17 127.7 8.8 126 8-155 191-316 (754)
25 KOG0617 Ras suppressor protein 99.3 5.5E-14 1.2E-18 111.0 -5.4 153 14-183 29-182 (264)
26 KOG1909 Ran GTPase-activating 99.3 4.2E-12 9.1E-17 111.4 4.3 243 43-295 25-309 (382)
27 KOG4341 F-box protein containi 99.2 1.5E-12 3.2E-17 116.7 -2.7 288 10-333 156-460 (483)
28 KOG1909 Ran GTPase-activating 99.1 4.6E-11 9.9E-16 105.0 2.2 246 13-274 25-311 (382)
29 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.6E-15 93.8 3.8 129 14-153 15-150 (175)
30 KOG3207 Beta-tubulin folding c 98.9 3E-10 6.5E-15 102.7 1.9 137 15-156 118-259 (505)
31 KOG2120 SCF ubiquitin ligase, 98.8 3.2E-10 6.9E-15 97.7 -1.6 141 10-155 176-325 (419)
32 KOG3207 Beta-tubulin folding c 98.8 9.4E-10 2E-14 99.6 0.9 206 44-295 117-337 (505)
33 PF14580 LRR_9: Leucine-rich r 98.8 2.9E-09 6.3E-14 87.6 3.3 133 44-181 15-150 (175)
34 KOG2120 SCF ubiquitin ligase, 98.6 9.4E-10 2E-14 94.8 -4.4 181 74-295 187-374 (419)
35 KOG0532 Leucine-rich repeat (L 98.6 1.4E-09 3E-14 101.6 -4.3 130 16-156 73-202 (722)
36 COG5238 RNA1 Ran GTPase-activa 98.6 2.1E-08 4.5E-13 85.6 3.1 226 44-334 26-281 (388)
37 PLN03150 hypothetical protein; 98.6 7.8E-08 1.7E-12 96.4 6.6 106 49-154 419-526 (623)
38 COG4886 Leucine-rich repeat (L 98.6 6E-08 1.3E-12 92.5 4.9 183 44-279 112-295 (394)
39 PLN03150 hypothetical protein; 98.6 1.6E-07 3.4E-12 94.2 7.8 107 19-131 419-527 (623)
40 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.2E-13 87.7 -0.1 127 17-155 283-411 (490)
41 KOG2982 Uncharacterized conser 98.5 1.4E-07 3.1E-12 81.6 4.5 224 22-292 49-287 (418)
42 COG4886 Leucine-rich repeat (L 98.4 3.2E-07 6.8E-12 87.6 5.2 177 14-214 112-289 (394)
43 COG5238 RNA1 Ran GTPase-activa 98.4 3E-07 6.6E-12 78.6 4.4 248 4-295 13-314 (388)
44 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.6E-12 61.7 3.5 56 73-129 2-59 (61)
45 KOG1259 Nischarin, modulator o 98.4 8.7E-08 1.9E-12 83.0 0.6 56 72-129 284-339 (490)
46 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.3E-12 62.9 1.9 59 48-106 1-60 (61)
47 KOG0532 Leucine-rich repeat (L 98.3 4.9E-08 1.1E-12 91.5 -3.0 103 50-156 145-247 (722)
48 KOG3665 ZYG-1-like serine/thre 98.1 3.3E-06 7.1E-11 84.8 4.5 133 18-155 122-262 (699)
49 KOG0531 Protein phosphatase 1, 98.0 5.6E-07 1.2E-11 86.2 -1.5 129 16-156 70-199 (414)
50 KOG1947 Leucine rich repeat pr 97.9 1.6E-06 3.5E-11 85.0 -0.4 243 118-399 187-445 (482)
51 KOG1859 Leucine-rich repeat pr 97.9 6.3E-07 1.4E-11 86.6 -4.5 138 6-155 153-291 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 48.6 3.6 34 73-106 2-35 (44)
53 KOG1859 Leucine-rich repeat pr 97.8 2.1E-06 4.6E-11 83.1 -2.2 160 11-184 102-289 (1096)
54 KOG4579 Leucine-rich repeat (L 97.8 6E-06 1.3E-10 63.5 0.1 101 49-152 28-132 (177)
55 KOG0531 Protein phosphatase 1, 97.8 5.8E-06 1.3E-10 79.2 -0.1 107 45-156 69-175 (414)
56 KOG1947 Leucine rich repeat pr 97.7 8.3E-06 1.8E-10 80.0 0.8 220 141-397 186-417 (482)
57 PF12799 LRR_4: Leucine Rich r 97.7 3.4E-05 7.4E-10 47.7 3.0 40 48-88 1-40 (44)
58 KOG2982 Uncharacterized conser 97.7 1E-05 2.2E-10 70.5 0.7 96 7-106 60-157 (418)
59 KOG3665 ZYG-1-like serine/thre 97.7 5.3E-05 1.1E-09 76.3 5.9 113 15-134 145-265 (699)
60 KOG2123 Uncharacterized conser 97.7 6.7E-06 1.4E-10 70.8 -0.9 101 15-125 16-123 (388)
61 PRK15386 type III secretion pr 97.6 0.00041 8.9E-09 64.7 9.9 66 68-138 48-113 (426)
62 KOG4579 Leucine-rich repeat (L 97.6 1.4E-05 3E-10 61.5 -0.2 113 19-138 28-141 (177)
63 KOG1644 U2-associated snRNP A' 97.4 0.00022 4.8E-09 58.8 4.7 107 202-335 42-150 (233)
64 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 58.4 4.5 104 48-154 42-151 (233)
65 PRK15386 type III secretion pr 97.2 0.0016 3.4E-08 60.9 8.6 59 199-274 49-107 (426)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00033 7.1E-09 60.2 1.3 108 44-154 39-154 (260)
67 KOG2123 Uncharacterized conser 96.9 8.1E-05 1.8E-09 64.3 -2.7 101 45-149 16-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.6 0.00056 1.2E-08 58.8 0.3 85 69-156 40-129 (260)
69 KOG3864 Uncharacterized conser 96.5 0.0002 4.4E-09 59.0 -3.0 69 321-395 121-190 (221)
70 KOG3864 Uncharacterized conser 96.5 0.00025 5.5E-09 58.5 -2.6 90 237-342 101-193 (221)
71 PF13306 LRR_5: Leucine rich r 96.2 0.0053 1.2E-07 48.1 3.5 104 13-128 7-112 (129)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 30.4 0.7 17 74-90 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 94.0 0.035 7.7E-07 26.3 1.3 15 73-87 2-16 (17)
74 PF13306 LRR_5: Leucine rich r 93.2 0.15 3.2E-06 39.8 4.5 102 43-150 7-110 (129)
75 KOG4308 LRR-containing protein 92.3 0.0051 1.1E-07 59.5 -6.0 86 20-107 89-184 (478)
76 KOG0473 Leucine-rich repeat pr 90.1 0.011 2.4E-07 50.2 -5.3 83 16-106 40-122 (326)
77 smart00367 LRR_CC Leucine-rich 89.6 0.35 7.6E-06 25.7 2.1 22 17-42 1-22 (26)
78 KOG4308 LRR-containing protein 88.1 0.017 3.7E-07 55.9 -6.4 40 355-394 402-445 (478)
79 PF13516 LRR_6: Leucine Rich r 86.5 0.55 1.2E-05 24.3 1.6 11 49-59 3-13 (24)
80 smart00369 LRR_TYP Leucine-ric 85.9 0.7 1.5E-05 24.4 1.9 19 72-90 2-20 (26)
81 smart00370 LRR Leucine-rich re 85.9 0.7 1.5E-05 24.4 1.9 19 72-90 2-20 (26)
82 KOG0473 Leucine-rich repeat pr 78.0 0.11 2.3E-06 44.4 -4.8 83 45-129 39-121 (326)
83 smart00364 LRR_BAC Leucine-ric 68.7 3.2 7E-05 22.1 1.1 17 73-89 3-19 (26)
84 KOG3763 mRNA export factor TAP 68.7 4.2 9.1E-05 39.5 2.7 67 15-85 215-283 (585)
85 smart00368 LRR_RI Leucine rich 64.5 6.8 0.00015 21.1 2.0 12 49-60 3-14 (28)
86 smart00365 LRR_SD22 Leucine-ri 61.0 6.2 0.00013 21.0 1.4 14 72-85 2-15 (26)
87 KOG3763 mRNA export factor TAP 44.7 10 0.00023 36.9 1.0 83 199-290 215-307 (585)
88 PF07723 LRR_2: Leucine Rich R 32.7 37 0.00079 18.0 1.6 10 20-29 2-11 (26)
89 PF03382 DUF285: Mycoplasma pr 23.4 13 0.00029 28.5 -1.7 80 11-97 4-88 (120)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.7e-28 Score=255.95 Aligned_cols=350 Identities=17% Similarity=0.143 Sum_probs=214.7
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-c
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-K 86 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~ 86 (418)
+.+|..|.++++|++|+|++|. +........+..+++|++|++++|.+.+.+|. ..+++|++|++++|.+. .
T Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~ 155 (968)
T PLN00113 83 GKISSAIFRLPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155 (968)
T ss_pred ccCChHHhCCCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc
Confidence 3467778888899999998887 44323344456788888888888876665553 45777888888888765 6
Q ss_pred CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826 87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..++++++|++|++.++.... ..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------EI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-------cC
Confidence 67777788888888888887667777778888888888888877767777778888888888877765542 12
Q ss_pred cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826 167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF 246 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (418)
...+.++++|+.+++....... .....+..+++|+.|++.+|... ...+..+..+++|++|++++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLS-----------GPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ChhHhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeee-----------ccCchhHhhccCcCEEECcC
Confidence 2334455555555554332111 11224455677777777766532 22344455566777777777
Q ss_pred ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCC-------CCCc
Q 014826 247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-------SSSS 318 (418)
Q Consensus 247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 318 (418)
|.+...+|.++..+++|+.|++++|.+.+..|. +..+++|+.|++++|.....++.........+... ...+
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 766666666666777777777777766655554 56667777777766653222322110000000000 0000
Q ss_pred cccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826 319 LVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 319 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l 394 (418)
.....+++|+.|++.++.-...++. .+..+++|++|++.+|.....+|..+..+++|+.|++++|...
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~--------~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPK--------SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCH--------HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 0012233444444443221112221 2236788888888888544466767777888999999888744
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.9e-27 Score=251.36 Aligned_cols=357 Identities=20% Similarity=0.148 Sum_probs=211.3
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-c
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-K 86 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~ 86 (418)
+.+|..+.++++|++|++++|. +.. .+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+. .
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~-----l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNN-----LSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CcCChHHcCcCCccEEECcCCc-----cCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 4578888999999999999887 433 25555888899999999988877778888888999999999988865 6
Q ss_pred CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826 87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166 (418)
Q Consensus 87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 166 (418)
+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++.+|..... .
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~ 348 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-------I 348 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-------C
Confidence 777888888999999988887777888888888888888888877777888888888888888877765421 1
Q ss_pred cccccCCcccccccccccCC---Ccch-----------------hhhhhhhcCCcccccceEeecccccCCCCCccccch
Q 014826 167 LESLKNLEHLQVCGIRRLGD---VSDV-----------------GEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDD 226 (418)
Q Consensus 167 ~~~l~~L~~L~~l~~~~~~~---~~~~-----------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (418)
...+..+++|+.+++..... ++.. .......+..+++|+.|++.+|...
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~----------- 417 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS----------- 417 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee-----------
Confidence 22233344444444432221 1110 0001112233445555555444421
Q ss_pred hhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccC
Q 014826 227 QLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLG 306 (418)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 306 (418)
...+..+..++.|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|.....++|+.|++++|.....++..+..
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence 11223334444555555555544444444444444555555555544444443333344444444444421111111000
Q ss_pred CCCCc-------cCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccC
Q 014826 307 VESDR-------HDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQ 379 (418)
Q Consensus 307 ~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 379 (418)
....+ ......+.....+++|++|+++++.-...++.. +..+++|++|++++|.....+|..+..
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS--------FSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh--------HhCcccCCEEECCCCcccccCChhHhc
Confidence 00000 000000011334555555555553322222222 236788888888888555577877777
Q ss_pred CCCccEEEeccCCchhc
Q 014826 380 TTTLKRLWILNCGPLGE 396 (418)
Q Consensus 380 ~~~L~~L~l~~c~~l~~ 396 (418)
+++|+.|++++|+..+.
T Consensus 570 l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 570 VESLVQVNISHNHLHGS 586 (968)
T ss_pred CcccCEEeccCCcceee
Confidence 88888888888885543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.1e-26 Score=208.76 Aligned_cols=330 Identities=18% Similarity=0.168 Sum_probs=223.1
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhh
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLC 92 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~ 92 (418)
|.++++|+.+++..|. ++. +|.+.....+|+.|+|.+|.+.+.-.+.++.++.|+.||++.|.+.++| ..+.
T Consensus 98 f~nl~nLq~v~l~~N~-----Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNE-----LTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred HhcCCcceeeeeccch-----hhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 4555666666665554 444 5554444555666666666654444455677788888888888888776 4455
Q ss_pred cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN 172 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 172 (418)
.-.++++|+|++|++.+--...+.++.+|..|.+++|.+..--+..|.++++|+.|++..|... +. ....+..
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir------iv-e~ltFqg 243 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR------IV-EGLTFQG 243 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee------ee-hhhhhcC
Confidence 6678889999888844433445778888999999988655444456667999999998887654 11 1223333
Q ss_pred CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826 173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV 252 (418)
Q Consensus 173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (418)
|.+|+.+.+...+ +....+ ..+..|.+++.|++..|... ..-..++.+++.|+.|+++.|.+...
T Consensus 244 L~Sl~nlklqrN~-I~kL~D---G~Fy~l~kme~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 244 LPSLQNLKLQRND-ISKLDD---GAFYGLEKMEHLNLETNRLQ-----------AVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred chhhhhhhhhhcC-cccccC---cceeeecccceeecccchhh-----------hhhcccccccchhhhhccchhhhhee
Confidence 4444433332211 111111 13566788999999988743 33345667889999999999987777
Q ss_pred CchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccc
Q 014826 253 FPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLR 331 (418)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 331 (418)
.++..+.+++|+.|+|++|.++..-+. +..+..|++|.|+.|. +.++.... +.++.+|+.|+
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a----------------f~~lssL~~Ld 371 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA----------------FVGLSSLHKLD 371 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH----------------HHHhhhhhhhc
Confidence 777778899999999999987754443 7778889999999988 66665543 34678999999
Q ss_pred cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCCchh
Q 014826 332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~ 395 (418)
+++. .+.... . .+......+++|++|.+.++ +++.++. .+..+++|+.|++.+|+..+
T Consensus 372 Lr~N-~ls~~I---E-Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 372 LRSN-ELSWCI---E-DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred CcCC-eEEEEE---e-cchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCccee
Confidence 8862 221111 1 12222337899999999999 7888885 67779999999998887443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-22 Score=215.33 Aligned_cols=339 Identities=22% Similarity=0.203 Sum_probs=188.4
Q ss_pred cccccceeeEEeecCCCCCC-CCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh
Q 014826 13 STRRVKRMRTLLISASGSDH-SSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET 90 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 90 (418)
.|.++++|+.|.++.+.... ..+.. .+|..+..++ +|+.|++.++. ...+|..+ ...+|++|++.++.+..++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCccccccccc
Confidence 46677777777776543000 00000 1222233332 46666666655 34444444 345666666666666666555
Q ss_pred hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccc
Q 014826 91 LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL 170 (418)
Q Consensus 91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 170 (418)
+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|++.+|.....++ ..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp-------~~- 700 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP-------TG- 700 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC-------Cc-
Confidence 55666666666666554555553 5556666666666665555566666666666666665544331111 00
Q ss_pred cCCcccccccccccCCCcchhhhh---------------hhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCC
Q 014826 171 KNLEHLQVCGIRRLGDVSDVGEAK---------------RLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP 235 (418)
Q Consensus 171 ~~L~~L~~l~~~~~~~~~~~~~~~---------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (418)
.++++|+.+++..+..+..++... ......+++|++|.+..+...... .......+.....
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~----~~~~~l~~~~~~~ 776 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW----ERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc----ccccccchhhhhc
Confidence 023333333333322211111000 000001234444444332110000 0000000111223
Q ss_pred CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826 236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS 315 (418)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
+++|+.|++++|.....+|.+++.+++|+.|++++|...+.+|....+++|+.|++++|..+..++.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~------------- 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD------------- 843 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-------------
Confidence 5788999999887777788888899999999999998777777755788999999999886655542
Q ss_pred CCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826 316 SSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 395 (418)
..++|+.|++.+ .+++.++.... .+++|+.|++.+|++++.+|.....+++|+.+++++|+.+.
T Consensus 844 -------~~~nL~~L~Ls~-n~i~~iP~si~--------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -------ISTNISDLNLSR-TGIEEVPWWIE--------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -------cccccCEeECCC-CCCccChHHHh--------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 235677777766 45666654443 67778888888887777777666667777777887777665
Q ss_pred c
Q 014826 396 E 396 (418)
Q Consensus 396 ~ 396 (418)
.
T Consensus 908 ~ 908 (1153)
T PLN03210 908 E 908 (1153)
T ss_pred c
Confidence 3
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.3e-25 Score=205.66 Aligned_cols=329 Identities=22% Similarity=0.211 Sum_probs=211.9
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH------------------------HH
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE------------------------IL 65 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------------~~ 65 (418)
+|.++..++++++|.|...+ +.. +|+-++.+.+|+.|.+.+|++... +|
T Consensus 24 FP~~v~qMt~~~WLkLnrt~-----L~~--vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP 96 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTK-----LEQ--VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIP 96 (1255)
T ss_pred CchhHHHhhheeEEEechhh-----hhh--ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCC
Confidence 77777788888888777655 443 565677777777777777663221 23
Q ss_pred HhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccc
Q 014826 66 RNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTG 144 (418)
Q Consensus 66 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 144 (418)
..+-++..|+.|+++.|.+.++|..+...+++-+|+|++|. +..+|.. +.++.-|-.|+++.| ..+.+|..+..+..
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence 33334555666666666666666656666666666666665 5555543 345566666666666 44566777777777
Q ss_pred cceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCcccc
Q 014826 145 LRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNE 224 (418)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (418)
|++|.+++|+.. .+.+..++.+++|..++....... -..+...+..+.+|..++++.|++
T Consensus 175 LqtL~Ls~NPL~-------hfQLrQLPsmtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~L---------- 234 (1255)
T KOG0444|consen 175 LQTLKLSNNPLN-------HFQLRQLPSMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNL---------- 234 (1255)
T ss_pred hhhhhcCCChhh-------HHHHhcCccchhhhhhhcccccch---hhcCCCchhhhhhhhhccccccCC----------
Confidence 777777776654 455667777777777766543210 011111344456777777777754
Q ss_pred chhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccc
Q 014826 225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEF 304 (418)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 304 (418)
..+++.+.++++|+.|++++|.++ ++....+.-.+|++|+++.|+++.....+.++++|+.|.+..|+ +.-+.
T Consensus 235 --p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk----L~FeG 307 (1255)
T KOG0444|consen 235 --PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK----LTFEG 307 (1255)
T ss_pred --CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc----ccccC
Confidence 345666777777888888877443 32223334457777888877666433347778888888887776 22222
Q ss_pred cCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCcc
Q 014826 305 LGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLK 384 (418)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 384 (418)
.+.. ++.+-.|+.++..+ ++++-.| ++++.|+.|++|.++.+ .+-.+|..++-++.|+
T Consensus 308 iPSG------------IGKL~~Levf~aan-N~LElVP--------EglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 308 IPSG------------IGKLIQLEVFHAAN-NKLELVP--------EGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLK 365 (1255)
T ss_pred Cccc------------hhhhhhhHHHHhhc-cccccCc--------hhhhhhHHHHHhccccc-ceeechhhhhhcCCcc
Confidence 2221 56777888887777 5555555 44559999999999776 6778999888899999
Q ss_pred EEEeccCCchhc
Q 014826 385 RLWILNCGPLGE 396 (418)
Q Consensus 385 ~L~l~~c~~l~~ 396 (418)
+|+++.||.+..
T Consensus 366 vLDlreNpnLVM 377 (1255)
T KOG0444|consen 366 VLDLRENPNLVM 377 (1255)
T ss_pred eeeccCCcCccC
Confidence 999999997653
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.6e-22 Score=209.54 Aligned_cols=315 Identities=23% Similarity=0.283 Sum_probs=214.1
Q ss_pred CCCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-Ccc
Q 014826 9 SLPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVK 86 (418)
Q Consensus 9 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~ 86 (418)
.+|..|..++ +|+.|.+.++. ++. +|..+ ...+|++|++.++. ...++..+..+++|++|+++++. ++.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~-----l~~--lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYP-----LRC--MPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCC-----CCC--CCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCc
Confidence 3666676665 58888888776 444 44434 45788888888887 55666677778888888888765 666
Q ss_pred CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc----
Q 014826 87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR---- 162 (418)
Q Consensus 87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---- 162 (418)
+|. +..+++|+.|++.+|.....+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++.+|......+..
T Consensus 650 ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence 764 6678888888888887777888888888888888888877677777665 6777888777766432111100
Q ss_pred -----ccccccccc---CCcccccccccccCC--Cc-chhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826 163 -----KACRLESLK---NLEHLQVCGIRRLGD--VS-DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE 231 (418)
Q Consensus 163 -----~~~~~~~l~---~L~~L~~l~~~~~~~--~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
....+..++ .+++|..+....... +. ............+++|+.|++++|.. ...++.
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-----------l~~lP~ 796 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-----------LVELPS 796 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-----------ccccCh
Confidence 000000111 122222222221110 00 00000001112346899999988763 234566
Q ss_pred hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCc
Q 014826 232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDR 311 (418)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 311 (418)
.+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. .++|+.|++.++. ++.+|..
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s-------- 864 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW-------- 864 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH--------
Confidence 78889999999999987666677654 7899999999999877666653 4689999999886 6666543
Q ss_pred cCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC
Q 014826 312 HDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP 374 (418)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 374 (418)
+..+++|+.|++.+|++++.++.... .+++|+.+++.+|..++.++
T Consensus 865 ---------i~~l~~L~~L~L~~C~~L~~l~~~~~--------~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 ---------IEKFSNLSFLDMNGCNNLQRVSLNIS--------KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ---------HhcCCCCCEEECCCCCCcCccCcccc--------cccCCCeeecCCCccccccc
Confidence 55789999999999999999887655 78999999999998887553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.3e-24 Score=196.66 Aligned_cols=347 Identities=18% Similarity=0.173 Sum_probs=249.1
Q ss_pred ccCCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCC
Q 014826 5 SKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPK 83 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 83 (418)
+.-..+|.......+|+.|+|.+|. |+. +-.+.++-++.||.|||+.|. +..++ ..|.+-.++++|+++.|.
T Consensus 112 N~Lt~IP~f~~~sghl~~L~L~~N~-----I~s-v~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 112 NELTRIPRFGHESGHLEKLDLRHNL-----ISS-VTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred chhhhcccccccccceeEEeeeccc-----ccc-ccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc
Confidence 3344578766666789999999998 444 344557888999999999998 44443 346677889999999999
Q ss_pred CccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCC
Q 014826 84 IVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDG 161 (418)
Q Consensus 84 l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 161 (418)
++.+. ..|..+.+|..|.|+.|+ ++.+|. .+..+++|+.|++..|.+...--..|..+++|+.+.+..|... .
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~----k 259 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS----K 259 (873)
T ss_pred ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc----c
Confidence 99775 567788899999999999 666765 5677999999999999443222455778999999998877654 2
Q ss_pred ccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcE
Q 014826 162 RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKE 241 (418)
Q Consensus 162 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 241 (418)
..+..+-.+.++. .+++..... .......+.++..|+.|++++|.+ .+...+.+..+++|++
T Consensus 260 L~DG~Fy~l~kme---~l~L~~N~l----~~vn~g~lfgLt~L~~L~lS~NaI-----------~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 260 LDDGAFYGLEKME---HLNLETNRL----QAVNEGWLFGLTSLEQLDLSYNAI-----------QRIHIDSWSFTQKLKE 321 (873)
T ss_pred ccCcceeeecccc---eeecccchh----hhhhcccccccchhhhhccchhhh-----------heeecchhhhccccee
Confidence 2233333444444 433322111 111122456778999999999873 3445567778899999
Q ss_pred EEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccc
Q 014826 242 LEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLV 320 (418)
Q Consensus 242 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (418)
|+++.|++..--+.++..+..|++|+|+.|........ +..+.+|+.|+|+.|. +...-.+....
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~------------- 387 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVA------------- 387 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhh-------------
Confidence 99999988777778888999999999999976543332 7789999999999988 43332222211
Q ss_pred cccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcC-CccccCCCCccEEEeccCCchhcccC
Q 014826 321 IIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKAL-PDHIHQTTTLKRLWILNCGPLGERYR 399 (418)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~ 399 (418)
+.++++|+.|++.+ ++++.++.... ..+++|++|++.++. +.++ +..+..+ .|+.|.+..-..+. .|+
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAf-------sgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nSssflC-DCq 456 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAF-------SGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNSSSFLC-DCQ 456 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhh-------ccCcccceecCCCCc-ceeecccccccc-hhhhhhhcccceEE-ecc
Confidence 45789999999999 78998886654 478999999999984 5555 4566656 88888875544333 354
Q ss_pred CCCCCCC
Q 014826 400 TGEGEDW 406 (418)
Q Consensus 400 ~~~~~~~ 406 (418)
-.|...|
T Consensus 457 l~Wl~qW 463 (873)
T KOG4194|consen 457 LKWLAQW 463 (873)
T ss_pred HHHHHHH
Confidence 4444444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=3.1e-23 Score=192.64 Aligned_cols=332 Identities=17% Similarity=0.182 Sum_probs=196.3
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 92 (418)
+.+.+|-+|-.|+++|. +++..+|+....++.++-|.|.... ...+|+.+++|.+|++|.++.|.+..+...+.
T Consensus 2 ~tgVLpFVrGvDfsgND-----Fsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs 75 (1255)
T KOG0444|consen 2 STGVLPFVRGVDFSGND-----FSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISVHGELS 75 (1255)
T ss_pred CccccceeecccccCCc-----CCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence 34567888999999997 5655788889999999999999988 77889999999999999999999887777778
Q ss_pred cCCCCcEEeccCccC-cccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826 93 ELYNLEKLDISYCFN-LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK 171 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 171 (418)
.++.|+.+.++.|.. ..-+|..+-.+.-|+.|+++.| .....|..+....++-.|++++|.+.+ ++ -.-+-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~Iet-----IP--n~lfi 147 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIET-----IP--NSLFI 147 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCcccc-----CC--chHHH
Confidence 888888888887762 2346777878888888888888 556778888777778888877766531 11 11223
Q ss_pred CCcccccccccc--cCCCcchhhhhhhhcCCcccccceEeecccccCCCC--------------CccccchhhhhhhCCC
Q 014826 172 NLEHLQVCGIRR--LGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE--------------RRKNEDDQLLLEALRP 235 (418)
Q Consensus 172 ~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~l~~ 235 (418)
+|..|-.+++.. .+.+|. .++.+.+|++|.+++|.+...+. ..++.....++..+..
T Consensus 148 nLtDLLfLDLS~NrLe~LPP-------Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPP-------QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred hhHhHhhhccccchhhhcCH-------HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 444443333332 222222 34445566666666665321000 0000112223333334
Q ss_pred CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826 236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS 315 (418)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
+.+|..++++.| ....+|+.+..+++|+.|+|++|.+++.-...+...+|+.|+++.|. +..+|..
T Consensus 221 l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a------------ 286 (1255)
T KOG0444|consen 221 LHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA------------ 286 (1255)
T ss_pred hhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH------------
Confidence 444444444444 22334444444445555555554444333333334444555554444 3333332
Q ss_pred CCccccccCCccccccccccccc--ccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826 316 SSSLVIIAFPKLKSLRIEGLMEL--EEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
+..+++|+.|.+.+ +++ +.+|.+.. .+..|+.+...++ ++.-+|..+..|..|++|.+..|+.
T Consensus 287 -----vcKL~kL~kLy~n~-NkL~FeGiPSGIG--------KL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 287 -----VCKLTKLTKLYANN-NKLTFEGIPSGIG--------KLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred -----HhhhHHHHHHHhcc-CcccccCCccchh--------hhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce
Confidence 23445555554443 222 23333322 4555666666555 5666666666677777777766654
Q ss_pred h
Q 014826 394 L 394 (418)
Q Consensus 394 l 394 (418)
+
T Consensus 352 i 352 (1255)
T KOG0444|consen 352 I 352 (1255)
T ss_pred e
Confidence 4
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=2e-21 Score=171.74 Aligned_cols=227 Identities=22% Similarity=0.256 Sum_probs=121.0
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE 89 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 89 (418)
+..++.++..|.+|++.++. +.. +|..+.++..++.+++++++ ..++|+.+..+..|+.|+++++.+.++|+
T Consensus 60 l~~dl~nL~~l~vl~~~~n~-----l~~--lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNK-----LSQ--LPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred ccHhhhcccceeEEEeccch-----hhh--CCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCc
Confidence 44456666677777777766 333 44446666666666666666 55566666666666666666666666666
Q ss_pred hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCc----------------------ccccCCcccccccccce
Q 014826 90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN----------------------SLRYMPVGIGRLTGLRT 147 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------------------~~~~~~~~l~~l~~L~~ 147 (418)
.++.+-.|..++..+|+ +..+|+++.++.+|..+++.+|. ..+.+|..++.+.+|..
T Consensus 132 ~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred hHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 66666666666666555 44455555555555555554442 33444444444444444
Q ss_pred ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchh
Q 014826 148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQ 227 (418)
Q Consensus 148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (418)
|++..+... .+..++++..|+.++..... +...........+++..|++..|.. .
T Consensus 211 LyL~~Nki~---------~lPef~gcs~L~Elh~g~N~----i~~lpae~~~~L~~l~vLDLRdNkl------------k 265 (565)
T KOG0472|consen 211 LYLRRNKIR---------FLPEFPGCSLLKELHVGENQ----IEMLPAEHLKHLNSLLVLDLRDNKL------------K 265 (565)
T ss_pred HHhhhcccc---------cCCCCCccHHHHHHHhcccH----HHhhHHHHhcccccceeeecccccc------------c
Confidence 444443322 22244444444443332110 0111111223445556666655543 2
Q ss_pred hhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCC
Q 014826 228 LLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCE 272 (418)
Q Consensus 228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 272 (418)
..+..+..+++|++||++.| ....+|..++++ +|+.|.+.+|+
T Consensus 266 e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 34555555666666676666 344556666666 66666666664
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=5.1e-20 Score=178.42 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=78.6
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+.++.+|+.|++++|. +.+ +|..+..+.+|++|+++.|. ....|...+++.+|++|+|.+|.+..+|..+..
T Consensus 41 ~~~~v~L~~l~lsnn~-----~~~--fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQ-----ISS--FPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred hhheeeeEEeeccccc-----ccc--CCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence 4566779999999887 555 66667888889999998886 556677778888999999999988889988989
Q ss_pred CCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826 94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 126 (418)
+++|++|++++|. .+.+|.-+..+..+..+..
T Consensus 113 lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAA 144 (1081)
T ss_pred hhcccccccchhc-cCCCchhHHhhhHHHHHhh
Confidence 9999999999888 5555544443333333333
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=1e-18 Score=154.81 Aligned_cols=265 Identities=26% Similarity=0.289 Sum_probs=187.7
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
..|..+.+++|. ...+.+.+.++.-|.+|++.++.+.++|..++.+..++.++.+++. ..++|..++.+.+|++++++
T Consensus 45 v~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcc
Confidence 467778888877 4444445677888888888888888888888888888888888887 77788888888888888888
Q ss_pred CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 207 (418)
+|. ...+|+.++.+..+..++...+... ...+.+.++ ..+..+
T Consensus 123 ~n~-~~el~~~i~~~~~l~dl~~~~N~i~--------slp~~~~~~----------------------------~~l~~l 165 (565)
T KOG0472|consen 123 SNE-LKELPDSIGRLLDLEDLDATNNQIS--------SLPEDMVNL----------------------------SKLSKL 165 (565)
T ss_pred ccc-eeecCchHHHHhhhhhhhccccccc--------cCchHHHHH----------------------------HHHHHh
Confidence 873 3567777887877777776555543 122222222 233333
Q ss_pred EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc
Q 014826 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE 287 (418)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~ 287 (418)
.+.++.. ...++..-+++.|++++...| .-+.+|..++.+.+|..|++..|.+. .+|.+.+|..|+
T Consensus 166 ~~~~n~l------------~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~ 231 (565)
T KOG0472|consen 166 DLEGNKL------------KALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLK 231 (565)
T ss_pred hccccch------------hhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHH
Confidence 3333322 122233233667777777777 55667888888888888888888554 667888888888
Q ss_pred hhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826 288 QLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC 367 (418)
Q Consensus 288 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 367 (418)
+++++.|. ++-++.+. ...++++..|++++ .++++.|.... -+.+|++|+++++
T Consensus 232 Elh~g~N~-i~~lpae~----------------~~~L~~l~vLDLRd-Nklke~Pde~c--------lLrsL~rLDlSNN 285 (565)
T KOG0472|consen 232 ELHVGENQ-IEMLPAEH----------------LKHLNSLLVLDLRD-NKLKEVPDEIC--------LLRSLERLDLSNN 285 (565)
T ss_pred HHHhcccH-HHhhHHHH----------------hcccccceeeeccc-cccccCchHHH--------HhhhhhhhcccCC
Confidence 88888776 55555442 23678888888888 67888876654 6788888888888
Q ss_pred CCCCcCCccccCCCCccEEEeccCCc
Q 014826 368 YELKALPDHIHQTTTLKRLWILNCGP 393 (418)
Q Consensus 368 ~~l~~~~~~~~~~~~L~~L~l~~c~~ 393 (418)
.++++|..++++ .|++|-+.|||.
T Consensus 286 -~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 286 -DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred -ccccCCcccccc-eeeehhhcCCch
Confidence 588888878877 888888888883
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=2e-17 Score=160.65 Aligned_cols=273 Identities=22% Similarity=0.242 Sum_probs=161.6
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE 89 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 89 (418)
||..+-.-..+..|++..|. .+.. - -+++.+..+|+.|+++++. .+.+|..+..+++|+.|++++|.+..+|.
T Consensus 13 ip~~i~~~~~~~~ln~~~N~----~l~~-p-l~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i~~vp~ 85 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNS----LLSR-P-LEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYIRSVPS 85 (1081)
T ss_pred cchhhccHHHHHhhhccccc----cccC-c-hHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhHhhCch
Confidence 55555555568888888887 3332 2 3446677779999999998 67788888899999999999999999999
Q ss_pred hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc-------
Q 014826 90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR------- 162 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------- 162 (418)
....+.+|+++.|.++. ...+|.++..+.+|+.|+++.|.+ ..+|..+..++.+..+...+|.........
T Consensus 86 s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l 163 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDL 163 (1081)
T ss_pred hhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhh
Confidence 99999999999999998 888999999999999999999944 456666655555555444433110000000
Q ss_pred -----cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCC---C----Cccccchhhhh
Q 014826 163 -----KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGG---E----RRKNEDDQLLL 230 (418)
Q Consensus 163 -----~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~----~~~~~~~~~~~ 230 (418)
.........++++ .+++++.... ...+..+.+|+.+...++...... . ....+..-...
T Consensus 164 ~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 164 RLNVLGGSFLIDIYNLTH--QLDLRYNEME-------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred hhhhcccchhcchhhhhe--eeecccchhh-------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence 0001111111111 1111111111 111222233333322222211000 0 00000000011
Q ss_pred hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccc
Q 014826 231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGD 302 (418)
Q Consensus 231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 302 (418)
..-....+|++++++.+. ...+|+|++.+++|+.++...|.++.....+...++|+.|.+..|. +++++.
T Consensus 235 ~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~ 304 (1081)
T KOG0618|consen 235 DVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPP 304 (1081)
T ss_pred ccccccccceeeecchhh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence 122235788888888884 4456788888999999988888775433334444555555555554 444443
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=2.9e-15 Score=138.65 Aligned_cols=273 Identities=19% Similarity=0.157 Sum_probs=169.9
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCCCc------HHHHHhhccccccceee
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVSLP------TEILRNIKKLVHLRYLN 78 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~ 78 (418)
.+.+..+..++.|+.++++++. +++ ..++..+...+.++.++++++.+. ..++..+.++++|++|+
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~-----l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNT-----LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred cchHHHHHHHhhccEEeecCCC-----CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence 3355667788889999999998 433 235666778888999999988654 23456677788999999
Q ss_pred eCCCCCc-cCchhhhcCC---CCcEEeccCccCccc----CChhhhcc-ccccEEeccCCcccc----cCCccccccccc
Q 014826 79 LRFPKIV-KLPETLCELY---NLEKLDISYCFNLKE----LPEGIGKL-INMKHLLNRGTNSLR----YMPVGIGRLTGL 145 (418)
Q Consensus 79 l~~~~l~-~l~~~~~~l~---~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L 145 (418)
+++|.+. ..+..+..+. +|++|++++|+.... +...+..+ ++|++|++++|.+.. .++..+..+.+|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 9999876 3444444444 499999999985532 22345566 899999999996653 234456677889
Q ss_pred ceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccc
Q 014826 146 RTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED 225 (418)
Q Consensus 146 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (418)
++|++.++...+. ........+..+++|+.+++..+.............+..+++|+.|++++|.... ..
T Consensus 168 ~~L~l~~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-------~~ 237 (319)
T cd00116 168 KELNLANNGIGDA---GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-------AG 237 (319)
T ss_pred CEEECcCCCCchH---HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-------HH
Confidence 9999887765421 0112223344445666666655432222222233445667788888888776421 00
Q ss_pred hhhhhhhC-CCCCCCcEEEEeeecCCCC----CchhhhcCCCccEEEeeCCCCCCC----CCC-CCCC-Cccchhccccc
Q 014826 226 DQLLLEAL-RPPLDLKELEIQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQ----LPP-LGKL-PSLEQLFISYM 294 (418)
Q Consensus 226 ~~~~~~~l-~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~-l~~l-~~L~~L~L~~~ 294 (418)
...+...+ ...+.|++|++++|.+.+. +...+..+++|+.+++++|.+... +.. +... +.|+.+++.++
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 01111111 1346788888888765533 223344567788888888876643 111 2333 56777777665
Q ss_pred c
Q 014826 295 S 295 (418)
Q Consensus 295 ~ 295 (418)
+
T Consensus 318 ~ 318 (319)
T cd00116 318 S 318 (319)
T ss_pred C
Confidence 4
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=2.9e-14 Score=142.23 Aligned_cols=112 Identities=22% Similarity=0.216 Sum_probs=58.2
Q ss_pred eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcE
Q 014826 20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEK 99 (418)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 99 (418)
-..|+++++. ++. +|..+. ++|+.|++.+|++. .+|. ..++|++|++++|.++.+|.. .++|+.
T Consensus 203 ~~~LdLs~~~-----Lts--LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 203 NAVLNVGESG-----LTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CcEEEcCCCC-----CCc--CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccce
Confidence 4456666665 333 332222 35666666666533 3332 235666666666666666532 345666
Q ss_pred EeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826 100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
|++.+|. +..+|.. ..+|+.|++++|. ...+|.. .++|+.|++.+|..
T Consensus 267 L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L 314 (788)
T PRK15387 267 LSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL 314 (788)
T ss_pred eeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc
Confidence 6666665 3444432 2346666666663 3344432 24566666655543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=3.5e-15 Score=138.16 Aligned_cols=259 Identities=19% Similarity=0.120 Sum_probs=160.3
Q ss_pred EEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCcc-------Cchh
Q 014826 22 TLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIVK-------LPET 90 (418)
Q Consensus 22 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-------l~~~ 90 (418)
+|+|..+. +++......+..+..|++|+++++.+.+. ++..+...+++++|+++++.+.. ++..
T Consensus 2 ~l~L~~~~-----l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 2 QLSLKGEL-----LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76 (319)
T ss_pred ccccccCc-----ccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH
Confidence 46676665 54444667788888899999999986433 55566778889999999887652 3355
Q ss_pred hhcCCCCcEEeccCccCcccCChhhhcccc---ccEEeccCCcccc----cCCcccccc-cccceecceeecCCCCCCCc
Q 014826 91 LCELYNLEKLDISYCFNLKELPEGIGKLIN---MKHLLNRGTNSLR----YMPVGIGRL-TGLRTLGEFRVSAGGDVDGR 162 (418)
Q Consensus 91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~ 162 (418)
+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.+|......
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 153 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS--- 153 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH---
Confidence 677889999999999866555555555555 9999999986542 233445566 78999998888755210
Q ss_pred cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEE
Q 014826 163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKEL 242 (418)
Q Consensus 163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 242 (418)
.......+..++.|+.+++....-...........+..+++|+.|++++|.... .....+...+..+++|++|
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD-------EGASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh-------HHHHHHHHHhcccCCCCEE
Confidence 112223344455566655554322111111122234445677888877775421 0112334455667778888
Q ss_pred EEeeecCCCCCchhhh-c----CCCccEEEeeCCCCCCCC----C-CCCCCCccchhcccccc
Q 014826 243 EIQFNRGNTVFPSWMT-S----LTNLKSLGLSLCENCEQL----P-PLGKLPSLEQLFISYMS 295 (418)
Q Consensus 243 ~l~~~~~~~~~~~~l~-~----~~~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~L~~~~ 295 (418)
++++|.+.+.....+. . .+.|++|++.+|.+...- . .+..+++|+.+++++|.
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 8877765543222222 1 367788888777654211 1 14445777777777776
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=8.2e-16 Score=136.27 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCC-CCCccCc
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRF-PKIVKLP 88 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~ 88 (418)
+|..+.. .-..+.|..|+ |+. +.+..|+.+++||+|+|++|.+...-|++|.+++.|..|-+.+ |+|+.+|
T Consensus 61 VP~~LP~--~tveirLdqN~-----I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPP--ETVEIRLDQNQ-----ISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCC--cceEEEeccCC-----ccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 4444443 45566777776 555 4456788888999999998886666688888888877776665 7788888
Q ss_pred -hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCc-ccccccccceecceeecC
Q 014826 89 -ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 89 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 155 (418)
..|.++..|+.|.+.-|+........+..+++|..|.+.+| ....++. .+..+..++++.+..+.+
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence 56788888888888888855555567888888888888888 4455555 567777788776655543
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=2.9e-14 Score=145.09 Aligned_cols=108 Identities=31% Similarity=0.325 Sum_probs=62.6
Q ss_pred ccCCCccEEecCCCC--CcHHHHHhhccccccceeeeCCCC-CccCchhhhcCCCCcEEeccCccCcccCChhhhccccc
Q 014826 45 RESTSLRALDVSQVS--LPTEILRNIKKLVHLRYLNLRFPK-IVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINM 121 (418)
Q Consensus 45 ~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 121 (418)
..+++|+.|-+.++. +.....+.|..++.|++||+++|. +..+|..++.+-+||+|+++++. +..+|.+++++.+|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 344456666666653 122222335556666666666555 55666666666666666666666 55666666666666
Q ss_pred cEEeccCCcccccCCcccccccccceecceee
Q 014826 122 KHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV 153 (418)
Q Consensus 122 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 153 (418)
.+|++..+.....+|..+..+++|++|.+...
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeecc
Confidence 66666665444444444455666666665443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=3.8e-13 Score=134.34 Aligned_cols=121 Identities=22% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+.. +|+.|++++|. ++. +|. ..++|++|++++|.+. .+|.. .++|+.|++++|.+..+
T Consensus 214 tsLP~~l~~--~L~~L~L~~N~-----Lt~--LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 214 TTLPDCLPA--HITTLVIPDNN-----LTS--LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred CcCCcchhc--CCCEEEccCCc-----CCC--CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhh
Confidence 357776653 89999999998 554 443 3578999999999854 45532 46899999999998888
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.+ ..+|... .+|+.|.+.+|..
T Consensus 278 p~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L 334 (788)
T PRK15387 278 PAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQL 334 (788)
T ss_pred hhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCcc
Confidence 764 3578899999998 6667752 47899999999954 3455422 3466666655443
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=1.7e-13 Score=139.49 Aligned_cols=112 Identities=31% Similarity=0.398 Sum_probs=95.1
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
-..++.|++|-+.++. .--..+..++|..++.|++||+++|.-.+.+|+.++.+-+||+|+++++.+..+|..+.+
T Consensus 541 ~~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred CCCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 3466789999999885 201224567799999999999999876788999999999999999999999999999999
Q ss_pred CCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826 94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 129 (418)
+..|.+|++..+.....+|.....|++|++|.+...
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999999999998866666666677999999999765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=4.6e-13 Score=134.36 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=127.6
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
++|+.|++++|.+. .+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 35666666666533 3443332 366666666666666665432 356666666666 445555443 356666666
Q ss_pred CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 207 (418)
+|.+ ..+|..+. ++|+.|++.+|... .++. . + .++|+.|
T Consensus 271 ~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-----------------------------~LP~---~----l--p~sL~~L 309 (754)
T PRK15370 271 HNKI-SCLPENLP--EELRYLSVYDNSIR-----------------------------TLPA---H----L--PSGITHL 309 (754)
T ss_pred CCcc-CccccccC--CCCcEEECCCCccc-----------------------------cCcc---c----c--hhhHHHH
Confidence 6533 34554442 35666655544322 0110 0 0 1356666
Q ss_pred EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc
Q 014826 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE 287 (418)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~ 287 (418)
++++|.... ++..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.+.. +|. .-.++|+
T Consensus 310 ~Ls~N~Lt~------------LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~-LP~-~lp~~L~ 370 (754)
T PRK15370 310 NVQSNSLTA------------LPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITV-LPE-TLPPTIT 370 (754)
T ss_pred HhcCCcccc------------CCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCc-CCh-hhcCCcC
Confidence 776665421 11111 367888888888544 456544 3688889998887653 443 1136788
Q ss_pred hhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826 288 QLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC 367 (418)
Q Consensus 288 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 367 (418)
.|++++|. +..+|.. -.++|+.|++++ .++..++.... .....++.+..|++.++
T Consensus 371 ~LdLs~N~-Lt~LP~~-------------------l~~sL~~LdLs~-N~L~~LP~sl~----~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 371 TLDVSRNA-LTNLPEN-------------------LPAALQIMQASR-NNLVRLPESLP----HFRGEGPQPTRIIVEYN 425 (754)
T ss_pred EEECCCCc-CCCCCHh-------------------HHHHHHHHhhcc-CCcccCchhHH----HHhhcCCCccEEEeeCC
Confidence 88888887 5555432 123678888887 45666553322 00123577888888887
Q ss_pred C
Q 014826 368 Y 368 (418)
Q Consensus 368 ~ 368 (418)
+
T Consensus 426 p 426 (754)
T PRK15370 426 P 426 (754)
T ss_pred C
Confidence 5
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-14 Score=114.52 Aligned_cols=108 Identities=26% Similarity=0.264 Sum_probs=71.5
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH 123 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 123 (418)
+-++.+.+.|.+++|+ ...+|..+.++.+|++|+++.|.++++|..++.+++|+.|+++-++ ...+|.+++.++-|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 4455666777777776 4455566777777777777777777777777777777777777766 6666777777777777
Q ss_pred EeccCCcccc-cCCcccccccccceecceee
Q 014826 124 LLNRGTNSLR-YMPVGIGRLTGLRTLGEFRV 153 (418)
Q Consensus 124 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 153 (418)
|++.+|+..+ .+|..|..++.|+.|.+.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 7777665433 35555555555555554443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=3.5e-14 Score=126.04 Aligned_cols=265 Identities=19% Similarity=0.143 Sum_probs=157.9
Q ss_pred ccccCCCCCc-cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCC-CCCcHHHH-Hhhccccccceeee
Q 014826 3 IFSKGASLPV-STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQ-VSLPTEIL-RNIKKLVHLRYLNL 79 (418)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l 79 (418)
.++...+||. .|+.+++||.|||+.|. |+. +.|..|..++.|..|.+.+ |+ +.++| ..|.++..|+-|.+
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~-I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISF-IAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ccCCcccCChhhccchhhhceecccccc-----hhh-cChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhc
Confidence 3455556665 78999999999999998 666 6788899999999999988 56 55665 45899999999999
Q ss_pred CCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCccccc------------CCccccccccc
Q 014826 80 RFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRY------------MPVGIGRLTGL 145 (418)
Q Consensus 80 ~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~l~~l~~L 145 (418)
.-|.+.-++ +.+..+++|..|.+..+. ...++. .+..+..++.+.+..|.++.. .|..++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 999888555 778899999999999988 555654 678889999999887753321 11222222111
Q ss_pred ceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccc
Q 014826 146 RTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED 225 (418)
Q Consensus 146 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (418)
.-..+.+........+... -.+..+..--.. +..++ .......+.++++|+.+++++|.++
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~------c~~esl~s~~~~--~d~~d-~~cP~~cf~~L~~L~~lnlsnN~i~---------- 287 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFL------CSLESLPSRLSS--EDFPD-SICPAKCFKKLPNLRKLNLSNNKIT---------- 287 (498)
T ss_pred chHHHHHHHhcccchhhhh------hhHHhHHHhhcc--ccCcC-CcChHHHHhhcccceEeccCCCccc----------
Confidence 1112222221110000000 001111110000 00000 0111223566677777777777643
Q ss_pred hhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826 226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS 295 (418)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~ 295 (418)
.....++....++++|.+..|.+...-...+.++.+|+.|+|.+|+++...|. +..+..|..|.+-.|+
T Consensus 288 -~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 -RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 33334455566666666666644333333444666666677766666655444 5555566666655443
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.33 E-value=1.1e-13 Score=123.88 Aligned_cols=292 Identities=16% Similarity=0.127 Sum_probs=149.7
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCC-Ccc--Cchhhhc
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPK-IVK--LPETLCE 93 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~ 93 (418)
.||.|.++|++ .+.+..+..+..+|++++.|++.++..+++ ..+.-..|++|++|++..|. ++. +......
T Consensus 139 ~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 67778888877 666666777777788888888877753332 22333567778887777654 442 2233446
Q ss_pred CCCCcEEeccCccCccc--CChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826 94 LYNLEKLDISYCFNLKE--LPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK 171 (418)
Q Consensus 94 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 171 (418)
+++|+++++++|..+.. +-....++..++++...+| ... ....+..
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC------------------------~e~------~le~l~~-- 262 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC------------------------LEL------ELEALLK-- 262 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc------------------------ccc------cHHHHHH--
Confidence 77777777777763322 1111223333443333333 111 0000000
Q ss_pred CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC
Q 014826 172 NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT 251 (418)
Q Consensus 172 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 251 (418)
.-..+..+-.+++..|... .+..++..-..+..|+.++.+.+...+
T Consensus 263 -------------------------~~~~~~~i~~lnl~~c~~l---------TD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 263 -------------------------AAAYCLEILKLNLQHCNQL---------TDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred -------------------------HhccChHhhccchhhhccc---------cchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 0011111222222222111 222233444445666666666553222
Q ss_pred C-Cchhhh-cCCCccEEEeeCCCCCCCCCC---CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCc
Q 014826 252 V-FPSWMT-SLTNLKSLGLSLCENCEQLPP---LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPK 326 (418)
Q Consensus 252 ~-~~~~l~-~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (418)
. ....++ ++++|+.+.+..|+...+... -.+++.|+.+++.+|..+.+. ..... ...++.
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-------------s~~C~~ 373 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-------------SRNCPR 373 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-------------ccCCch
Confidence 2 222333 567777777777764333222 235677777777776533222 11111 336677
Q ss_pred ccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchhccc
Q 014826 327 LKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLGERY 398 (418)
Q Consensus 327 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~ 398 (418)
|+.+.+++|..+++-.+..... ...+...|+.+++++|+.+++.. ..+..+++|+.+++.+|..+.+..
T Consensus 374 lr~lslshce~itD~gi~~l~~---~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSS---SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhh---ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 7777777776666553322211 11255667777777777665332 345557777777777777665543
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4e-12 Score=127.72 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=92.4
Q ss_pred CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826 8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL 87 (418)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 87 (418)
.++|..+. +.|+.|+|++|. ++. +|..+ ..+|++|++++|.+. .+|..+. .+|+.|++++|.+..+
T Consensus 191 tsLP~~Ip--~~L~~L~Ls~N~-----Lts--LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 191 TTIPACIP--EQITTLILDNNE-----LKS--LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITEL 256 (754)
T ss_pred CcCCcccc--cCCcEEEecCCC-----CCc--CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcC
Confidence 34666554 489999999998 554 44323 358999999999854 5555442 4799999999999999
Q ss_pred chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826 88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+ ..+|..+. ++|+.|++.+|..
T Consensus 257 P~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 257 PERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred ChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCcc
Confidence 87664 589999999988 557776553 5899999999954 45665443 4677777766554
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=5.5e-14 Score=110.96 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=117.4
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 93 (418)
+-.+.+...|.|+.|+ ++. .|..+..+.+|++|++.+|+ ..++|..++.+++|+.|+++.|++..+|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-----l~~--vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-----LTV--VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred ccchhhhhhhhcccCc-----eee--cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 3466677888888887 555 45458888899999999888 778888888899999999998888888888999
Q ss_pred CCCCcEEeccCccCc-ccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826 94 LYNLEKLDISYCFNL-KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN 172 (418)
Q Consensus 94 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 172 (418)
++.|+.|++.++... ..+|..+-.|..|+.|.+++|.+ +.+|..++++++|+.|.+.++... .....+..
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll--------~lpkeig~ 171 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL--------SLPKEIGD 171 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh--------hCcHHHHH
Confidence 999999999888744 35677777788888888888844 567888888888888887766543 34445566
Q ss_pred Ccccccccccc
Q 014826 173 LEHLQVCGIRR 183 (418)
Q Consensus 173 L~~L~~l~~~~ 183 (418)
+..|+.+++..
T Consensus 172 lt~lrelhiqg 182 (264)
T KOG0617|consen 172 LTRLRELHIQG 182 (264)
T ss_pred HHHHHHHhccc
Confidence 66666666654
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-12 Score=111.42 Aligned_cols=243 Identities=21% Similarity=0.101 Sum_probs=145.6
Q ss_pred HhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc----cCch-------hhhcCCCCcEEeccCccC
Q 014826 43 LFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV----KLPE-------TLCELYNLEKLDISYCFN 107 (418)
Q Consensus 43 ~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~ 107 (418)
.+.....++.+++++|.|... +...+.+.++|+..++++-..+ ++|. .+..+++|++++|++|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345555566666666554322 3333444555555555543211 2222 233455666666666654
Q ss_pred cccCChh----hhccccccEEeccCCcccccC-------------CcccccccccceecceeecCCCCCCCccccccccc
Q 014826 108 LKELPEG----IGKLINMKHLLNRGTNSLRYM-------------PVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL 170 (418)
Q Consensus 108 ~~~~~~~----l~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 170 (418)
....+.. +.++.+|++|.+++|.....- ...+..-+.|+++...+|...+. +-......+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---ga~~~A~~~ 181 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---GATALAEAF 181 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---cHHHHHHHH
Confidence 4333322 345566666666666332110 11233345677776666654421 111222344
Q ss_pred cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCC
Q 014826 171 KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGN 250 (418)
Q Consensus 171 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (418)
...+.|+.+.+......+.-..+....+..|++|+.|++..|..+. .....+...+..+++|+.+.+++|.+.
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcccchheeecccccccc
Confidence 5556666666666555554446777788899999999999887641 122344556778899999999999777
Q ss_pred CCCchhhh-----cCCCccEEEeeCCCCCCCCC-----CCCCCCccchhcccccc
Q 014826 251 TVFPSWMT-----SLTNLKSLGLSLCENCEQLP-----PLGKLPSLEQLFISYMS 295 (418)
Q Consensus 251 ~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~ 295 (418)
.....++. ..|+|++|.+.+|.++.... .....|.|+.|+|.+|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66554443 68999999999998765432 14558999999999998
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=1.5e-12 Score=116.72 Aligned_cols=288 Identities=19% Similarity=0.124 Sum_probs=189.9
Q ss_pred CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH-HHH-hhccccccceeeeCCCC-Cc-
Q 014826 10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE-ILR-NIKKLVHLRYLNLRFPK-IV- 85 (418)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~-~~~~l~~L~~L~l~~~~-l~- 85 (418)
+...-+.||++.+|.+.+|. .+++..+.++-..|++|+.|++..|..+++ ... ....|++|++|+++||. +.
T Consensus 156 lrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 156 LRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 33445699999999999999 899988889888999999999999754443 333 34679999999999998 44
Q ss_pred -cCchhhhcCCCCcEEeccCccCccc--CChhhhccccccEEeccCCcccccCC--cccccccccceecceeecCCCCCC
Q 014826 86 -KLPETLCELYNLEKLDISYCFNLKE--LPEGIGKLINMKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVSAGGDVD 160 (418)
Q Consensus 86 -~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~ 160 (418)
.+.....++..++.+.+++|.-... +...=+.++-+.++++..|....... ..-..+..|+.++..++...+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~--- 308 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT--- 308 (483)
T ss_pred CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc---
Confidence 3444566777788888888762221 00111234556677766774333211 112357788888887776542
Q ss_pred Cccccccccc-cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCC
Q 014826 161 GRKACRLESL-KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDL 239 (418)
Q Consensus 161 ~~~~~~~~~l-~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 239 (418)
+..+-.+ .+..+|+.+.+..+..+.+. .+...-++++.|+.+++..+... .+..+.....+|+.|
T Consensus 309 ---d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~~---------~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 309 ---DEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGLI---------TDGTLASLSRNCPRL 374 (483)
T ss_pred ---hHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhccccccee---------hhhhHhhhccCCchh
Confidence 2233232 23455555555555544432 23334578899999999887653 333345555689999
Q ss_pred cEEEEeeecCCCCC-chhh----hcCCCccEEEeeCCCCCCCCC--CCCCCCccchhcccccccceeccccccCCCCCcc
Q 014826 240 KELEIQFNRGNTVF-PSWM----TSLTNLKSLGLSLCENCEQLP--PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH 312 (418)
Q Consensus 240 ~~L~l~~~~~~~~~-~~~l----~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 312 (418)
+.+.+++|...... -..+ ..+..+.++.+.+|+.+.+.. .+..+++|+.+++.+|..+..-+...+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~------- 447 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF------- 447 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-------
Confidence 99999988743332 1222 267789999999998665432 277899999999999987655444433
Q ss_pred CCCCCccccccCCcccccccc
Q 014826 313 DSSSSSLVIIAFPKLKSLRIE 333 (418)
Q Consensus 313 ~~~~~~~~~~~~~~L~~L~l~ 333 (418)
...+|+++...+-
T Consensus 448 --------~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 448 --------ATHLPNIKVHAYF 460 (483)
T ss_pred --------HhhCccceehhhc
Confidence 3467777766443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=4.6e-11 Score=104.99 Aligned_cols=246 Identities=17% Similarity=0.121 Sum_probs=173.1
Q ss_pred cccccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCC---CcHHHHHh-------hccccccceeee
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVS---LPTEILRN-------IKKLVHLRYLNL 79 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~-------~~~l~~L~~L~l 79 (418)
.......+..++|+||. ++. +.+...+.+-++|++.+++.-. ....+|+. +..+++|++|++
T Consensus 25 ~~~~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HhcccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 44577899999999998 333 4567778888999999998653 23344544 456789999999
Q ss_pred CCCCCc-----cCchhhhcCCCCcEEeccCccCcccCCh-h-------------hhccccccEEeccCCccccc----CC
Q 014826 80 RFPKIV-----KLPETLCELYNLEKLDISYCFNLKELPE-G-------------IGKLINMKHLLNRGTNSLRY----MP 136 (418)
Q Consensus 80 ~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~-------------l~~l~~L~~L~l~~~~~~~~----~~ 136 (418)
|+|.++ .+.+.+..+..|+.|.+.+|. ++.... . .++-++|+.+..++|..-.. +.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 999977 223556789999999999998 433221 1 23457899999998854322 34
Q ss_pred cccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccC
Q 014826 137 VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKE 216 (418)
Q Consensus 137 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 216 (418)
..+...+.|+.+.+..+.+.. .........+..+++|+++++++..-....+..+...+...++|+.+++.+|.+..
T Consensus 179 ~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHhccccceEEEecccccC---chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 456677888888887776652 11223445678889999998887654444445556677788999999999997642
Q ss_pred CCCCccccchhhhhhhC-CCCCCCcEEEEeeecCCCCCch----hhhcCCCccEEEeeCCCCC
Q 014826 217 GGERRKNEDDQLLLEAL-RPPLDLKELEIQFNRGNTVFPS----WMTSLTNLKSLGLSLCENC 274 (418)
Q Consensus 217 ~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 274 (418)
.+ ...+...+ ...+.|+.+.+.+|.++..... .+...+.|..|++.+|.+-
T Consensus 256 ~G-------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EG-------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 11 22333333 4579999999999977655322 2336899999999999873
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.6e-10 Score=93.80 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=48.2
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhc-cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhh-
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFR-ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETL- 91 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~- 91 (418)
+-++.+++.|+|.++. ++. +.. +. .+.+|+.|++++|.+. .+ +.+..+++|++|++++|.++.+.+.+
T Consensus 15 ~~n~~~~~~L~L~~n~-----I~~--Ie~-L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-----IST--IEN-LGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ----------------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH
T ss_pred cccccccccccccccc-----ccc--ccc-hhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchH
Confidence 4466678888888887 554 333 44 5778888888888744 33 35677888888888888888886544
Q ss_pred hcCCCCcEEeccCccCcccCC--hhhhccccccEEeccCCccccc---CCcccccccccceecceee
Q 014826 92 CELYNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRY---MPVGIGRLTGLRTLGEFRV 153 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~ 153 (418)
..+++|+.|++++|+ +..+. ..++.+++|+.|++.+|+.... -...+..+|+|+.|+-...
T Consensus 85 ~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 368888888888887 33322 3467788888888888865533 1234567777777775443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3e-10 Score=102.72 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=96.8
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCccCc--hh
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIVKLP--ET 90 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~l~--~~ 90 (418)
+++.+|+...|.++. +......+....|++++.|+|++|-+... +......+++|+.|+++.|.+...- ..
T Consensus 118 sn~kkL~~IsLdn~~-----V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-----VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCcc-----ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 578889999999887 44312225678899999999999865433 4455678999999999999865322 12
Q ss_pred hhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 91 LCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 91 ~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
-..+++|+.|.++.|.+.. ++...+..+|+|+.|.+.+|.....-......+..|+.|++.++...
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 2368889999999998553 33444567899999999988532222233345678889998888765
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.2e-10 Score=97.68 Aligned_cols=141 Identities=19% Similarity=0.246 Sum_probs=100.5
Q ss_pred CCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-CccC
Q 014826 10 LPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVKL 87 (418)
Q Consensus 10 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l 87 (418)
+.+.++-++ +|++|||+... ++...+..+++.|.+|+.|.+.+.++.+.+...+.+-.+|+.|+++.|. +++.
T Consensus 176 lae~~~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence 444555444 78999999876 7777788888999999999999998777777778888899999998876 6643
Q ss_pred c--hhhhcCCCCcEEeccCccCcccCC-hhhhc-cccccEEeccCCcc---cccCCcccccccccceecceeecC
Q 014826 88 P--ETLCELYNLEKLDISYCFNLKELP-EGIGK-LINMKHLLNRGTNS---LRYMPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 88 ~--~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~-l~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~ 155 (418)
. -.+..+..|..|++++|....+.. ..++. -++|+.|+++++.. ...+..-..++++|.+|++.++.-
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 3 456788899999999998655432 22333 36788888888631 111222234677788887766543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9.4e-10 Score=99.57 Aligned_cols=206 Identities=17% Similarity=0.051 Sum_probs=103.9
Q ss_pred hccCCCccEEecCCCCCcHHHH--HhhccccccceeeeCCCCCc---cCchhhhcCCCCcEEeccCccCcccCChh-hhc
Q 014826 44 FRESTSLRALDVSQVSLPTEIL--RNIKKLVHLRYLNLRFPKIV---KLPETLCELYNLEKLDISYCFNLKELPEG-IGK 117 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~ 117 (418)
-+++.+|++..|+++. ++..+ .....|++++.|+++.|-+. .+......+|+|+.|+++.|+...-.... -.-
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3456666666666665 32222 24456666677777666544 33344556666666666666532211111 113
Q ss_pred cccccEEeccCCccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhh
Q 014826 118 LINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL 196 (418)
Q Consensus 118 l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~ 196 (418)
+++|+.|.+++|.+.-. +-..+..+++|+.|.+..|... ......
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-------~~~~~~--------------------------- 241 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-------LIKATS--------------------------- 241 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-------ceecch---------------------------
Confidence 45566666666643311 2222234455555555444211 000000
Q ss_pred hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC-Cchh-----hhcCCCccEEEeeC
Q 014826 197 ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV-FPSW-----MTSLTNLKSLGLSL 270 (418)
Q Consensus 197 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~ 270 (418)
..-.+.|++|++++|... +-........++.|..|.++.+.+... +|+. ...+++|+.|++..
T Consensus 242 -~~i~~~L~~LdLs~N~li----------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 242 -TKILQTLQELDLSNNNLI----------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred -hhhhhHHhhccccCCccc----------ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 011245666777666542 111123344566677777766643332 2332 23677788888887
Q ss_pred CCC--CCCCCCCCCCCccchhcccccc
Q 014826 271 CEN--CEQLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 271 ~~~--~~~~~~l~~l~~L~~L~L~~~~ 295 (418)
|++ ...+..+..+++|++|.+..+.
T Consensus 311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 311 NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred Cccccccccchhhccchhhhhhccccc
Confidence 766 3333335566777777766655
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=2.9e-09 Score=87.59 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=51.4
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhh-hccccc
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGI-GKLINM 121 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L 121 (418)
+.++..+++|+|.++.+. .+ +.++ .+.+|+.|++++|.++.+. .+..+++|+.|++++|+ +..+...+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcC
Confidence 566778999999999844 34 3455 5789999999999999885 57789999999999999 66676555 468999
Q ss_pred cEEeccCCccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccc
Q 014826 122 KHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGI 181 (418)
Q Consensus 122 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 181 (418)
++|++++|.+... ....+..+++|+.|++.+|+... ...+....+..+|.|+.|..-.+
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence 9999999954332 22456788999999998887652 12333344555555555444333
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.4e-10 Score=94.83 Aligned_cols=181 Identities=18% Similarity=0.063 Sum_probs=100.1
Q ss_pred cceeeeCCCCCc--cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccC--Ccccccccccceec
Q 014826 74 LRYLNLRFPKIV--KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM--PVGIGRLTGLRTLG 149 (418)
Q Consensus 74 L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~ 149 (418)
|++||++...++ .+...+..|.+|+.|.+.+.+..+.+...+++-.+|+.|+++.|...... .-.+..|+.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 666666665544 44445556666666666666655555555666666666666655322221 11234455555555
Q ss_pred ceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826 150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL 229 (418)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 229 (418)
+..|... ..........+ -++|..|+++++.... ....+
T Consensus 267 lsWc~l~-------------------------------~~~Vtv~V~hi--se~l~~LNlsG~rrnl--------~~sh~ 305 (419)
T KOG2120|consen 267 LSWCFLF-------------------------------TEKVTVAVAHI--SETLTQLNLSGYRRNL--------QKSHL 305 (419)
T ss_pred chHhhcc-------------------------------chhhhHHHhhh--chhhhhhhhhhhHhhh--------hhhHH
Confidence 5544433 22222222222 2567777777664321 22233
Q ss_pred hhhCCCCCCCcEEEEeeecCCC-CCchhhhcCCCccEEEeeCCCCCC--CCCCCCCCCccchhcccccc
Q 014826 230 LEALRPPLDLKELEIQFNRGNT-VFPSWMTSLTNLKSLGLSLCENCE--QLPPLGKLPSLEQLFISYMS 295 (418)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~L~~~~ 295 (418)
..-.+.|++|.+||+++|.... .....+..++-|++|.++.|.... .+-.+...|.|.+|++.||.
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 3334568888888888774322 233345578888888888885321 12236778888888888874
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.4e-09 Score=101.64 Aligned_cols=130 Identities=28% Similarity=0.321 Sum_probs=102.4
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY 95 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 95 (418)
.+..-...|++.|+ +.. +|..+..|..|+.+.++.|. ...+|..+..+..|++|+++.|.+..+|..+..++
T Consensus 73 ~ltdt~~aDlsrNR-----~~e--lp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp 144 (722)
T KOG0532|consen 73 DLTDTVFADLSRNR-----FSE--LPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP 144 (722)
T ss_pred cccchhhhhccccc-----ccc--CchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc
Confidence 44555667777777 454 66667888888888888876 55677778888889999999988888888787776
Q ss_pred CCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826 96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
|+.|-+++|+ ++.+|..++..++|.+|+.+.| -+..+|..++.+.+|+.|++..+...
T Consensus 145 -Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 145 -LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred -ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh
Confidence 8888888888 7888888888888999988888 45667888888888888888777643
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=2.1e-08 Score=85.59 Aligned_cols=226 Identities=20% Similarity=0.117 Sum_probs=121.7
Q ss_pred hccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc----cCch-------hhhcCCCCcEEeccCccCc
Q 014826 44 FRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV----KLPE-------TLCELYNLEKLDISYCFNL 108 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~~ 108 (418)
+.-+..+..++|+||.|.+. +...+.+-++|++.++++-..+ .++. .+.+||+|+..+++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 55588888999999987654 3444566678888888775533 2222 2345555555555555544
Q ss_pred ccCChh----hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccccccccc
Q 014826 109 KELPEG----IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL 184 (418)
Q Consensus 109 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 184 (418)
...|.. +++-..|.||.+++|......-..+++ .|.+| ..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l----------------------a~------------ 149 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL----------------------AY------------ 149 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH----------------------HH------------
Confidence 444432 233344555555555221111111110 00000 00
Q ss_pred CCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch-----hhhc
Q 014826 185 GDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-----WMTS 259 (418)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~l~~ 259 (418)
.......+.|+.....+|+... .........+.....|+.+.+..|.+..+... .+.+
T Consensus 150 ----------nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y 212 (388)
T COG5238 150 ----------NKKAADKPKLEVVICGRNRLEN-------GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY 212 (388)
T ss_pred ----------HhhhccCCCceEEEeccchhcc-------CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH
Confidence 0011223567777666665421 12222333455567888888888866555322 2237
Q ss_pred CCCccEEEeeCCCCCCCCCC-----CCCCCccchhcccccccceecc-ccccCCCCCccCCCCCccccccCCcccccccc
Q 014826 260 LTNLKSLGLSLCENCEQLPP-----LGKLPSLEQLFISYMSSVKRVG-DEFLGVESDRHDSSSSSLVIIAFPKLKSLRIE 333 (418)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~-----l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 333 (418)
+.+|+.|+++.|.++..-.. +..++.|+.|.+..|- ++.-+ ..++... +...+|+|..|...
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f-----------~e~~~p~l~~L~~~ 280 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRF-----------NEKFVPNLMPLPGD 280 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHh-----------hhhcCCCccccccc
Confidence 88999999999976643221 5667788999998886 32222 1111111 13356777777776
Q ss_pred c
Q 014826 334 G 334 (418)
Q Consensus 334 ~ 334 (418)
+
T Consensus 281 Y 281 (388)
T COG5238 281 Y 281 (388)
T ss_pred h
Confidence 5
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=7.8e-08 Score=96.39 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=82.4
Q ss_pred CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826 49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 127 (418)
.++.|+|+++.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877777777888888888888888875 777778888888888888888777888888888888888888
Q ss_pred CCcccccCCcccccc-cccceecceeec
Q 014826 128 GTNSLRYMPVGIGRL-TGLRTLGEFRVS 154 (418)
Q Consensus 128 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 154 (418)
+|.+.+.+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 887777888777643 345555555443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=6e-08 Score=92.51 Aligned_cols=183 Identities=33% Similarity=0.356 Sum_probs=116.5
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhcccc-ccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhcccccc
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLV-HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMK 122 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 122 (418)
+...+.++.|.+.++. ..+++....... +|++|+++++.+..+|..+..+++|+.|++.+|+ +.++|...+..++|+
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 4555778888888887 445555555553 7888888888888887677788888888888888 777776665778888
Q ss_pred EEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcc
Q 014826 123 HLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK 202 (418)
Q Consensus 123 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 202 (418)
.|++++| ....+|..+.....|+++.+.++... .....+ +..+
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~----------------------------~~~~ 232 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSII--------ELLSSL----------------------------SNLK 232 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhhhhcCCcce--------ecchhh----------------------------hhcc
Confidence 8888888 55666766656666777777666311 011111 2223
Q ss_pred cccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC
Q 014826 203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP 279 (418)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 279 (418)
++..+.+..+... .....+..++.+++|+++.|.+.. ++. ++...+++.|+++++......+.
T Consensus 233 ~l~~l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 233 NLSGLELSNNKLE------------DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccCCceee------------eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 3333333333211 113445556677777777774433 333 66777888888888776655544
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.6e-07 Score=94.21 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=93.2
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L 97 (418)
.++.|+|+++. +.. .++..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 419 ~v~~L~L~~n~-----L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQG-----LRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCC-----ccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 48899999987 444 35666899999999999999988899988999999999999999987 789999999999
Q ss_pred cEEeccCccCcccCChhhhcc-ccccEEeccCCcc
Q 014826 98 EKLDISYCFNLKELPEGIGKL-INMKHLLNRGTNS 131 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 131 (418)
+.|++++|.+.+.+|..++.+ .++..+++.+|..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999888999888764 5677888888743
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.5e-08 Score=87.66 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=63.7
Q ss_pred cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCC
Q 014826 17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYN 96 (418)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 96 (418)
..-|.++||++|. |+. +.+-..-.+.+|.|++++|.+...- .+..+++|+.||+++|.+..+..+-.++.|
T Consensus 283 Wq~LtelDLS~N~-----I~~--iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNL-----ITQ--IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccc-----hhh--hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcC
Confidence 3445555666554 333 3333444555666666655533211 144555566666666555555444445555
Q ss_pred CcEEeccCccCcccCChhhhccccccEEeccCCcccccC--CcccccccccceecceeecC
Q 014826 97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM--PVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~ 155 (418)
++.|.+..|. +.++. +++++.+|..|++.+|++ ..+ ...+++++-|+++.+.+|+.
T Consensus 354 IKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred Eeeeehhhhh-Hhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCc
Confidence 6666665554 32222 355555666666655532 221 23355555555555555543
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.4e-07 Score=81.61 Aligned_cols=224 Identities=17% Similarity=0.059 Sum_probs=127.5
Q ss_pred EEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCccCchhh-hcCCCCc
Q 014826 22 TLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIVKLPETL-CELYNLE 98 (418)
Q Consensus 22 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~ 98 (418)
.+.+.++. +...++ ...+-..++.++.++|.+|.+.+. +...+.++|.|++|++++|.+...-..+ ....+|+
T Consensus 49 llvln~~~--id~~gd--~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSI--IDNEGD--VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred hheecCCC--CCcchh--HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 45555554 223333 444456788888899988886543 4445678888999999888754221111 3567888
Q ss_pred EEeccCccCcc-cCChhhhccccccEEeccCCcccccCC--ccccc-ccccceecceeecCCCCCCCccccccccccCCc
Q 014826 99 KLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMP--VGIGR-LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLE 174 (418)
Q Consensus 99 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 174 (418)
.|.|.+.+... +.-..+..+|.+++|+++.|+.-.... ..+.. -+.++++.. ++
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~----------------------~~ 182 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ----------------------LP 182 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc----------------------CC
Confidence 88888877443 344456677888888887772211000 00000 011222211 11
Q ss_pred ccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC-CC
Q 014826 175 HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT-VF 253 (418)
Q Consensus 175 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~ 253 (418)
.+.....+ .....+..+++..+-+..|.+. ...-......++.+.-|.++.+.+.. ..
T Consensus 183 c~~~~w~~-----------~~~l~r~Fpnv~sv~v~e~PlK----------~~s~ek~se~~p~~~~LnL~~~~idswas 241 (418)
T KOG2982|consen 183 CLEQLWLN-----------KNKLSRIFPNVNSVFVCEGPLK----------TESSEKGSEPFPSLSCLNLGANNIDSWAS 241 (418)
T ss_pred cHHHHHHH-----------HHhHHhhcccchheeeecCccc----------chhhcccCCCCCcchhhhhcccccccHHH
Confidence 11111111 1111122367777777777542 12223344556667777887774322 13
Q ss_pred chhhhcCCCccEEEeeCCCCCCCCCC-------CCCCCccchhccc
Q 014826 254 PSWMTSLTNLKSLGLSLCENCEQLPP-------LGKLPSLEQLFIS 292 (418)
Q Consensus 254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-------l~~l~~L~~L~L~ 292 (418)
.+.+..+++|.-|+++.+++.+.+.. ++++++++.|+=+
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 45667999999999999998876543 6778888888655
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=3.2e-07 Score=87.58 Aligned_cols=177 Identities=21% Similarity=0.254 Sum_probs=121.5
Q ss_pred ccccceeeEEeecCCCCCCCCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826 14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92 (418)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 92 (418)
+...+.++.|++.++. +.+ ++....... +|+.|+++++. ...+|..+..+++|+.|+++.|.+.++|....
T Consensus 112 ~~~~~~l~~L~l~~n~-----i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNN-----ITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCCcc-----ccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence 3455778999998887 555 444455553 89999999988 55665668889999999999999998887776
Q ss_pred cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826 93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN 172 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 172 (418)
..++|+.|+++++. +..+|...+....|++|.+++|. ....+..+.++..+..+.+..+... ........
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~--------~~~~~~~~ 253 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE--------DLPESIGN 253 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee--------eccchhcc
Confidence 88899999999988 77788766666779999988883 3345566677777777765554432 11233344
Q ss_pred CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccc
Q 014826 173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKK 214 (418)
Q Consensus 173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 214 (418)
+..++.+++...... ... .+....+++.++++++..
T Consensus 254 l~~l~~L~~s~n~i~-~i~-----~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 254 LSNLETLDLSNNQIS-SIS-----SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccceecccccccc-ccc-----cccccCccCEEeccCccc
Confidence 444555544433221 111 145567888898888764
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=3e-07 Score=78.61 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=156.6
Q ss_pred cccCCCCCcccc---ccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCCC---cHHHH-------Hh
Q 014826 4 FSKGASLPVSTR---RVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVSL---PTEIL-------RN 67 (418)
Q Consensus 4 ~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~---~~~~~-------~~ 67 (418)
+.+..++...+. -+..+..++||||. ++. +.+...+.+-.+|++.+++.-.. .+.++ ..
T Consensus 13 l~T~eDvk~v~eel~~~d~~~evdLSGNt-----igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~a 87 (388)
T COG5238 13 LETKEDVKGVVEELEMMDELVEVDLSGNT-----IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA 87 (388)
T ss_pred ccccchhhHHHHHHHhhcceeEEeccCCc-----ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHH
Confidence 344445555443 45688999999998 444 34556667778899998886531 23333 34
Q ss_pred hccccccceeeeCCCCCc-cCc----hhhhcCCCCcEEeccCccCcccCChh-hh-------------ccccccEEeccC
Q 014826 68 IKKLVHLRYLNLRFPKIV-KLP----ETLCELYNLEKLDISYCFNLKELPEG-IG-------------KLINMKHLLNRG 128 (418)
Q Consensus 68 ~~~l~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~-l~-------------~l~~L~~L~l~~ 128 (418)
+.+|++|+..++|+|.++ ..| +.++....|.+|.+.+|. .+.+..+ ++ .-|.|+...+.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 567999999999999977 444 557788999999999998 5544321 22 235566666655
Q ss_pred CcccccCCcc-----cccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826 129 TNSLRYMPVG-----IGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203 (418)
Q Consensus 129 ~~~~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~ 203 (418)
|.+ ...+.. +..-..|++..+..|.+. ...........+..+++
T Consensus 167 NRl-engs~~~~a~~l~sh~~lk~vki~qNgIr------------------------------pegv~~L~~~gl~y~~~ 215 (388)
T COG5238 167 NRL-ENGSKELSAALLESHENLKEVKIQQNGIR------------------------------PEGVTMLAFLGLFYSHS 215 (388)
T ss_pred chh-ccCcHHHHHHHHHhhcCceeEEeeecCcC------------------------------cchhHHHHHHHHHHhCc
Confidence 532 111111 111123344443333322 11123334445666789
Q ss_pred ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh------cCCCccEEEeeCCCCCCCC
Q 014826 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT------SLTNLKSLGLSLCENCEQL 277 (418)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~~~ 277 (418)
|+.|++..|..+. ..+..+...+..++.|+.|.+..|.+......++. ..|+|..|...+|..-...
T Consensus 216 LevLDlqDNtft~-------~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 216 LEVLDLQDNTFTL-------EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred ceeeeccccchhh-------hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 9999998887542 12344555677788899999999976665443332 5789999999998654432
Q ss_pred ------CC--CCCCCccchhcccccc
Q 014826 278 ------PP--LGKLPSLEQLFISYMS 295 (418)
Q Consensus 278 ------~~--l~~l~~L~~L~L~~~~ 295 (418)
+. -..+|.|..+.+.||.
T Consensus 289 i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 289 ILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred eeeechhhhhhcccHHHHHHHHccCc
Confidence 22 3568999999999887
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.5e-07 Score=61.67 Aligned_cols=56 Identities=30% Similarity=0.481 Sum_probs=30.4
Q ss_pred ccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCC
Q 014826 73 HLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGT 129 (418)
Q Consensus 73 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 129 (418)
+|++|++++|.++.+| ..+.++++|++|++++|. +..++ ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4555566655555555 345555666666666555 23332 34555666666666555
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=8.7e-08 Score=83.03 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=27.0
Q ss_pred cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826 72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 129 (418)
.-|++||+++|.++.+-+.+.-.|.++.|++++|. +..+.. ++.+++|++|++++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc
Confidence 33445555555555544444455555555555554 222222 444555555555554
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=2e-07 Score=62.91 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=42.1
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCcc
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCF 106 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~ 106 (418)
++|++|++++|.+...-+..|.++++|++|++++|.++.++ ..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46777778777644333345677888888888888777666 467788888888888775
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.29 E-value=4.9e-08 Score=91.55 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=56.8
Q ss_pred ccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826 50 LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129 (418)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 129 (418)
|++|-+++|+ .+.+|+.++...+|..|+.+.|.+..+|..+.++..|+.|.++.|+ ...+|..+. .-.|..|+++.|
T Consensus 145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC
Confidence 4444444444 3334444444455555555555555555555555555555555555 444555555 445666666555
Q ss_pred cccccCCcccccccccceecceeecCC
Q 014826 130 NSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 130 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
.+..+|-.|.+|.+|++|-+.+|...
T Consensus 222 -kis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 222 -KISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ceeecchhhhhhhhheeeeeccCCCC
Confidence 45566666777777777666666543
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=3.3e-06 Score=84.78 Aligned_cols=133 Identities=18% Similarity=0.070 Sum_probs=79.5
Q ss_pred ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCc-HHHHHhhccccccceeeeCCCCCccCchhhhcCCC
Q 014826 18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP-TEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYN 96 (418)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 96 (418)
.+|++|+++|.. .+...+....-.-+|.|+.|.+++-.+. +++......+++|+.||+++++++.+ ..++.+++
T Consensus 122 ~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 367777777766 4455456665666777777777776543 33444456677777777777777766 56677777
Q ss_pred CcEEeccCccCcc-cCChhhhccccccEEeccCCcccccC--C----cccccccccceecceeecC
Q 014826 97 LEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYM--P----VGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 97 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~l~~~~~ 155 (418)
|+.|.+++-.+.. .--..+-.+.+|+.|+++........ . +.-..+|.|+.|+++++..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7777776655332 11223556777777777765222111 1 0111356666666654433
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=5.6e-07 Score=86.20 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=73.9
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY 95 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 95 (418)
.+..++.+.+..+. +.. ....+..+++|+.|++.++.+ ..+...+..+++|++|++++|.++.+. .+..++
T Consensus 70 ~l~~l~~l~l~~n~-----i~~--~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL-----IAK--ILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLT 140 (414)
T ss_pred HhHhHHhhccchhh-----hhh--hhcccccccceeeeeccccch-hhcccchhhhhcchheecccccccccc-chhhcc
Confidence 45555556555554 332 222356667777777777763 333222556777777777777777663 355566
Q ss_pred CCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc-cccccccceecceeecCC
Q 014826 96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 156 (418)
.|+.|++.+|. +..+.. +..+.+|+.+++++|.+...-+ . +..+.+++.+.+..+...
T Consensus 141 ~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCc-chhccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 67777777776 444432 4446677777777774332222 1 355566666666555443
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=1.6e-06 Score=85.02 Aligned_cols=243 Identities=18% Similarity=0.164 Sum_probs=117.1
Q ss_pred cccccEEeccCCccccc--CCcccccccccceecceee-cCCCCCCCccccccccccCCcccccccccccCCCcchhhhh
Q 014826 118 LINMKHLLNRGTNSLRY--MPVGIGRLTGLRTLGEFRV-SAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAK 194 (418)
Q Consensus 118 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 194 (418)
+++|+.|.+.++..... .-.....+++|+.|++..+ ....... .........++.|+.+++.....+.+.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP---LLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch---hHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 45566665555533322 2223334555555555441 1110000 0011122333444455554444444322222
Q ss_pred hhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC--CchhhhcCCCccEEEeeCCC
Q 014826 195 RLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV--FPSWMTSLTNLKSLGLSLCE 272 (418)
Q Consensus 195 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~ 272 (418)
....|++|+.|.+.++... .+..+......+++|++|++++|..... +.....++++++.|.+..+.
T Consensus 264 --l~~~c~~L~~L~l~~c~~l---------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 264 --LASRCPNLETLSLSNCSNL---------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred --HHhhCCCcceEccCCCCcc---------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 2233778888886666521 4455566667788888888887754322 22223367777776655543
Q ss_pred CCCCCCC-----CCC-C-CccchhcccccccceeccccccCCCCCccCCCCCccccccCCccc-cccccccccc-ccccc
Q 014826 273 NCEQLPP-----LGK-L-PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLK-SLRIEGLMEL-EEWDY 343 (418)
Q Consensus 273 ~~~~~~~-----l~~-l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~ 343 (418)
....+.. ... . ..++.+.+.+|+.+.+....... ..... .+.+.+|+.+ ..+..
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-----------------~~~~~~~~~l~gc~~l~~~l~~ 395 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-----------------ISDLGLELSLRGCPNLTESLEL 395 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-----------------ccCcchHHHhcCCcccchHHHH
Confidence 2111100 011 1 13344444444433333222111 11111 3445556666 33332
Q ss_pred cccccCCcccccCCCccEEEEecCCCCCcCCc-ccc-CCCCccEEEeccCCchhcccC
Q 014826 344 GITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIH-QTTTLKRLWILNCGPLGERYR 399 (418)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~-~~~~L~~L~l~~c~~l~~~~~ 399 (418)
... .+..++.|.+..|...+...- ... .+..++.+.+.+|+.+.....
T Consensus 396 ~~~--------~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 396 RLC--------RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred Hhc--------cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 222 344589999999976653322 111 277889999999998776644
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=6.3e-07 Score=86.63 Aligned_cols=138 Identities=19% Similarity=0.143 Sum_probs=94.9
Q ss_pred cCCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc
Q 014826 6 KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV 85 (418)
Q Consensus 6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 85 (418)
..+++..++ ..-.|.+.+.+.|. +.. +.+.+.-++.|+.|+|++|++...- .+.+|++|++|||++|.+.
T Consensus 153 cggd~~ns~-~Wn~L~~a~fsyN~-----L~~--mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 153 CGGDISNSP-VWNKLATASFSYNR-----LVL--MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hccccccch-hhhhHhhhhcchhh-----HHh--HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence 344444332 33467777777776 554 5555777888999999999855432 6788999999999999988
Q ss_pred cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccccc-CCcccccccccceecceeecC
Q 014826 86 KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSA 155 (418)
Q Consensus 86 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 155 (418)
.+|..-..-.+|+.|.+++|. ...+- ++.++.+|+.|++++|-+.+. --.-+..+..|+.|.+.+|+.
T Consensus 223 ~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 223 HVPQLSMVGCKLQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccccchhhhhheeeeecccH-HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 887543323349999999987 55454 488899999999998833222 112245566777777776654
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.2e-05 Score=48.55 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=18.0
Q ss_pred ccceeeeCCCCCccCchhhhcCCCCcEEeccCcc
Q 014826 73 HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCF 106 (418)
Q Consensus 73 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~ 106 (418)
+|++|++++|.++.+|..+.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555545555555555555555
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=2.1e-06 Score=83.13 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=102.3
Q ss_pred CccccccceeeEEeecCCCCCCCCccH-----------------HHHHHHhcc----------CCCccEEecCCCCCcHH
Q 014826 11 PVSTRRVKRMRTLLISASGSDHSSLNA-----------------EIVEELFRE----------STSLRALDVSQVSLPTE 63 (418)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~l~~----------~~~L~~L~l~~~~~~~~ 63 (418)
|-++..+.+||+|.+.+|.+ ....+ ..+.++|.. +..|...+.++|. ...
T Consensus 102 pi~ifpF~sLr~LElrg~~L--~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL--STAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVL 178 (1096)
T ss_pred CceeccccceeeEEecCcch--hhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHh
Confidence 66778899999999999982 11111 012222221 2345555555555 223
Q ss_pred HHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccc
Q 014826 64 ILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRL 142 (418)
Q Consensus 64 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l 142 (418)
+-+.+.-++.|+.|+++.|.+..+. .+..+++|++|||++|+ ...+|.. ..+|. |+.|.+++|.... -.++.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHh--hhhHHhh
Confidence 3344555778889999998888774 67888899999999888 6666642 23344 8888888884322 2456788
Q ss_pred cccceecceeecCCCCCCCccccccccccCCccccccccccc
Q 014826 143 TGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL 184 (418)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 184 (418)
.+|+.|++.+|-.. ....+.-+..|..|+.+++...
T Consensus 254 ksL~~LDlsyNll~------~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLS------EHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhccchhHhhhh------cchhhhHHHHHHHHHHHhhcCC
Confidence 88888888887665 2334455556666666665543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=6e-06 Score=63.51 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=50.3
Q ss_pred CccEEecCCCCCcHHHHHh---hccccccceeeeCCCCCccCchhhh-cCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826 49 SLRALDVSQVSLPTEILRN---IKKLVHLRYLNLRFPKIVKLPETLC-ELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124 (418)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (418)
.+-.++|++|+ ...+++. +.+...|+..++++|.+..+|..+. ..+.++.|++.+|. +.++|..++.|+.|+.|
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 34445555555 2222222 2333344444566666665554443 33456666666655 55566556666666666
Q ss_pred eccCCcccccCCcccccccccceeccee
Q 014826 125 LNRGTNSLRYMPVGIGRLTGLRTLGEFR 152 (418)
Q Consensus 125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 152 (418)
+++.|. ....|..+..+.+|..|+..+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 665552 233444444444555544433
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=5.8e-06 Score=79.23 Aligned_cols=107 Identities=29% Similarity=0.309 Sum_probs=80.7
Q ss_pred ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826 45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124 (418)
Q Consensus 45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (418)
..+..++.+.+..+. .......+..+++|.+|++.++.+..+...+..+++|++|++++|. +.++.. +..+..|+.|
T Consensus 69 ~~l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhh-hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhh
Confidence 456677777788776 4344445788899999999999999887657889999999999998 555553 7777889999
Q ss_pred eccCCcccccCCcccccccccceecceeecCC
Q 014826 125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG 156 (418)
Q Consensus 125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 156 (418)
++.+|.+... ..+..++.|+.+++.++...
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhh
Confidence 9999844322 33445788888888877765
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=8.3e-06 Score=79.99 Aligned_cols=220 Identities=16% Similarity=0.092 Sum_probs=128.9
Q ss_pred cccccceecceeecCCCCCCCccccccccccCCcccccccccc-cCCCcchhhhhhhhcCCcccccceEeecccccCCCC
Q 014826 141 RLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRR-LGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE 219 (418)
Q Consensus 141 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 219 (418)
.++.|+.+.+..+...++. .........+.|+.+++.. ...+...+.........|++|+.++++++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i---- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD-----SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV---- 256 (482)
T ss_pred hCchhhHhhhcccccCChh-----hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc----
Confidence 4788888888777654211 1223344566666666654 22233333333335567799999999988631
Q ss_pred CccccchhhhhhhCCCCCCCcEEEEeeec-CCCCCchhh-hcCCCccEEEeeCCCCCCCC--CC-CCCCCccchhccccc
Q 014826 220 RRKNEDDQLLLEALRPPLDLKELEIQFNR-GNTVFPSWM-TSLTNLKSLGLSLCENCEQL--PP-LGKLPSLEQLFISYM 294 (418)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~--~~-l~~l~~L~~L~L~~~ 294 (418)
.+..+......|++|+.|.+..|. .++..-..+ ..+++|++|++++|....+. .. ...+++|+.+.+..+
T Consensus 257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 233333334458999999988886 354443444 37999999999999765332 11 344777666655544
Q ss_pred c---cceeccccccCCCCCccCCCCCccccccC-CcccccccccccccccccccccccCCcccccCCCcc-EEEEecCCC
Q 014826 295 S---SVKRVGDEFLGVESDRHDSSSSSLVIIAF-PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLS-SLVIDSCYE 369 (418)
Q Consensus 295 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~ 369 (418)
. .++....... .... ..+..+.+.+|++++++..... .-.... .+.+.+|+.
T Consensus 332 ~~c~~l~~~~l~~~---------------~~~~~d~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGL---------------LTLTSDDLAELILRSCPKLTDLSLSYC--------GISDLGLELSLRGCPN 388 (482)
T ss_pred CCCccHHHHHHHHh---------------hccCchhHhHHHHhcCCCcchhhhhhh--------hccCcchHHHhcCCcc
Confidence 3 2333322111 1112 2566777777777777766554 222222 566777777
Q ss_pred CC-cCCccccCCCCccEEEeccCCchhcc
Q 014826 370 LK-ALPDHIHQTTTLKRLWILNCGPLGER 397 (418)
Q Consensus 370 l~-~~~~~~~~~~~L~~L~l~~c~~l~~~ 397 (418)
++ ++.........++.|++..|..+...
T Consensus 389 l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 389 LTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred cchHHHHHhccCCccceEecccCcccccc
Confidence 73 33322333444899999999876655
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.4e-05 Score=47.68 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP 88 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 88 (418)
++|++|++++|.+. ++|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777777633 45555677777777777777766554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=1e-05 Score=70.46 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-
Q 014826 7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV- 85 (418)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~- 85 (418)
.+++-..-+.+++++.+||.+|. ++.-++ +..++.+++.|++|++++|.+...+-..-.-+.+|++|-+.++++.
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~--iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNL--ISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccch--hccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 34444444589999999999998 333333 6677889999999999999865443211134678999999998844
Q ss_pred -cCchhhhcCCCCcEEeccCcc
Q 014826 86 -KLPETLCELYNLEKLDISYCF 106 (418)
Q Consensus 86 -~l~~~~~~l~~L~~L~l~~~~ 106 (418)
.....+..+|.++.|.++.|.
T Consensus 136 ~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 136 TQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhcchhhhhhhhccch
Confidence 555667788888888888773
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=5.3e-05 Score=76.27 Aligned_cols=113 Identities=25% Similarity=0.277 Sum_probs=85.5
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc--hhhh
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP--ETLC 92 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~--~~~~ 92 (418)
.-+|+|++|.++|-. +..+.+...+.++++|+.||++++++. .+ .+++++++|++|.+.+-.+..-. ..+.
T Consensus 145 ~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 378999999999976 434347777899999999999999844 44 57899999999999987766433 3466
Q ss_pred cCCCCcEEeccCccCcccC--Ch----hhhccccccEEeccCCccccc
Q 014826 93 ELYNLEKLDISYCFNLKEL--PE----GIGKLINMKHLLNRGTNSLRY 134 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~--~~----~l~~l~~L~~L~l~~~~~~~~ 134 (418)
.+++|+.||++.......- .. --..+|+|+.|+++++...+.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8999999999987643321 11 112489999999998744433
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=6.7e-06 Score=70.84 Aligned_cols=101 Identities=22% Similarity=0.182 Sum_probs=77.8
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch--hhh
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE--TLC 92 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~ 92 (418)
+.+.+.+.|+++||. +.+ ..+..+++.|++|.|+-|++.+-- .+.+|.+|++|++..|.|..+.+ -+.
T Consensus 16 sdl~~vkKLNcwg~~-----L~D---Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCG-----LDD---ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred hHHHHhhhhcccCCC-----ccH---HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 456688999999997 776 334789999999999999854332 37889999999999999887653 366
Q ss_pred cCCCCcEEeccCccCcccCCh-----hhhccccccEEe
Q 014826 93 ELYNLEKLDISYCFNLKELPE-----GIGKLINMKHLL 125 (418)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~ 125 (418)
++++|+.|.|..|...+.-+. .+.-+|+|++|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999999988775555443 245688888887
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00041 Score=64.66 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=45.4
Q ss_pred hccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc
Q 014826 68 IKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG 138 (418)
Q Consensus 68 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 138 (418)
+..+.+++.|++++|.++.+|. --.+|+.|.+++|.....+|..+ .++|++|++++|.....+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4457888888888888887772 12358888888877666667544 257888888887544445543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=1.4e-05 Score=61.53 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=86.7
Q ss_pred eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhh-ccccccceeeeCCCCCccCchhhhcCCCC
Q 014826 19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNI-KKLVHLRYLNLRFPKIVKLPETLCELYNL 97 (418)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~l~~~~~~l~~L 97 (418)
.+..++|+.|. +-.+.+ ..+.+....+|+..++++|.+. ++|..| ...+.++.|+++.|.+.++|..+..++.|
T Consensus 28 E~h~ldLssc~--lm~i~d--avy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQ--LMYIAD--AVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred Hhhhcccccch--hhHHHH--HHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 45567788876 223444 5666888899999999999844 444444 56678999999999999999889999999
Q ss_pred cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc
Q 014826 98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG 138 (418)
Q Consensus 98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 138 (418)
+.|+++.|. ....|..+..+.+|-.|+..++.. ..++..
T Consensus 103 r~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 103 RSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred hhcccccCc-cccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 999999998 666777788889999998888733 344433
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00022 Score=58.80 Aligned_cols=107 Identities=27% Similarity=0.284 Sum_probs=79.5
Q ss_pred ccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC--CCCC
Q 014826 202 KYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE--QLPP 279 (418)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~ 279 (418)
.+...+++..|+.. -...+..++.|.+|.++.|+++...|.--.-+++|+.|.+.+|.+.+ ++.+
T Consensus 42 d~~d~iDLtdNdl~-------------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-------------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred cccceecccccchh-------------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch
Confidence 35566677666532 24556778999999999998887777655578899999999997654 5666
Q ss_pred CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826 280 LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL 335 (418)
Q Consensus 280 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (418)
+..||+|+.|.+-+|+ +.+-......+ +-.+|+|+.|++...
T Consensus 109 La~~p~L~~Ltll~Np-v~~k~~YR~yv-------------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP-VEHKKNYRLYV-------------LYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCc-hhcccCceeEE-------------EEecCcceEeehhhh
Confidence 8899999999999998 44433332222 567899999998864
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00026 Score=58.39 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh-cCCCCcEEeccCccCcccCCh--hhhccccccEE
Q 014826 48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC-ELYNLEKLDISYCFNLKELPE--GIGKLINMKHL 124 (418)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L 124 (418)
.....++|+.|.+. .+ ..+.+++.|..|.++.|+++.+...+. -+++|+.|.+.+|. +..+.. .++.|++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 35667888888733 33 246778889999999999887765444 46789999999887 443322 37788999999
Q ss_pred eccCCccccc---CCcccccccccceecceeec
Q 014826 125 LNRGTNSLRY---MPVGIGRLTGLRTLGEFRVS 154 (418)
Q Consensus 125 ~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~ 154 (418)
.+-+|..... --..+.++++|++|++....
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9988854432 33567788899998876554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0016 Score=60.89 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCC
Q 014826 199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC 274 (418)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 274 (418)
..|++++.|+++.|.+. .++ .-+.+|++|.+++|.....+|..+ .++|+.|++++|...
T Consensus 49 ~~~~~l~~L~Is~c~L~------------sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 49 EEARASGRLYIKDCDIE------------SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HHhcCCCEEEeCCCCCc------------ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc
Confidence 34566666666665432 111 123456666666654434444433 246666666666433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00033 Score=60.21 Aligned_cols=108 Identities=25% Similarity=0.128 Sum_probs=64.5
Q ss_pred hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC--Cc-cCchhhhcCCCCcEEeccCccCc--ccCChhhhcc
Q 014826 44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK--IV-KLPETLCELYNLEKLDISYCFNL--KELPEGIGKL 118 (418)
Q Consensus 44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~-~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l 118 (418)
...+..|+.|.+.+..+++. ..+-.+++|+.|.+++|+ +. .++.....+++|+++++++|++- .+++ .++.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence 34555666666666553321 134567788888888884 22 44444455688888888888722 2233 36677
Q ss_pred ccccEEeccCCccccc---CCcccccccccceecceeec
Q 014826 119 INMKHLLNRGTNSLRY---MPVGIGRLTGLRTLGEFRVS 154 (418)
Q Consensus 119 ~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~ 154 (418)
++|..|++..|....- --..+.-+++|+.|+-....
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 7888888887743321 11234456778887765543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=8.1e-05 Score=64.34 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=70.2
Q ss_pred ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCCh--hhhcccccc
Q 014826 45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPE--GIGKLINMK 122 (418)
Q Consensus 45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~ 122 (418)
+.+.+.+.|+.+||.+ +++ ....+++.|++|.++-|.++.+. .+..|++|+.|.|+.|. +.++.. -+.++++|+
T Consensus 16 sdl~~vkKLNcwg~~L-~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGL-DDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCc-cHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 3355778889988884 343 23567888999999988888773 47788888888888887 444432 266788888
Q ss_pred EEeccCCcccccCC-----cccccccccceec
Q 014826 123 HLLNRGTNSLRYMP-----VGIGRLTGLRTLG 149 (418)
Q Consensus 123 ~L~l~~~~~~~~~~-----~~l~~l~~L~~L~ 149 (418)
.|.|..|.-.+..+ ..+.-+++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888775444332 3355666776664
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.00056 Score=58.81 Aligned_cols=85 Identities=24% Similarity=0.188 Sum_probs=58.9
Q ss_pred ccccccceeeeCCCCCccCchhhhcCCCCcEEeccCc--cCcccCChhhhccccccEEeccCCcccccCCcc---ccccc
Q 014826 69 KKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYC--FNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG---IGRLT 143 (418)
Q Consensus 69 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~l~ 143 (418)
..+..|+.|++....++.+. .+-.+++|++|.++.| +....++....++++|++|++++|.+. . +.. +.++.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhc
Confidence 44566777777777655442 2446889999999999 655666666677899999999999543 2 333 34566
Q ss_pred ccceecceeecCC
Q 014826 144 GLRTLGEFRVSAG 156 (418)
Q Consensus 144 ~L~~L~l~~~~~~ 156 (418)
+|..|++++|...
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 6777777776544
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0002 Score=59.02 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=57.1
Q ss_pred cccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchh
Q 014826 321 IIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLG 395 (418)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~ 395 (418)
...+++++.|.+.+|..+.++..... -+..|+|+.|+|++|+.+++-. ..+..+++|+.|++.+-|.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 45788999999999999999987665 2257999999999999998654 456779999999998887554
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00025 Score=58.51 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--C-CCCCccchhcccccccceeccccccCCCCCccC
Q 014826 237 LDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--L-GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHD 313 (418)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 313 (418)
..++.++-+++.++.+..+.+..++.++.|.+.+|...++..- + +-.++|+.|+|++|+.+++-+...
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--------- 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--------- 171 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---------
Confidence 4466777777767666777888999999999999987665421 2 246999999999999887766554
Q ss_pred CCCCccccccCCccccccccccccccccc
Q 014826 314 SSSSSLVIIAFPKLKSLRIEGLMELEEWD 342 (418)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 342 (418)
+..+++|+.|++.+++.+....
T Consensus 172 -------L~~lknLr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 172 -------LLKLKNLRRLHLYDLPYVANLE 193 (221)
T ss_pred -------HHHhhhhHHHHhcCchhhhchH
Confidence 5578999999999877665444
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.15 E-value=0.0053 Score=48.13 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=45.0
Q ss_pred cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826 13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL 91 (418)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~ 91 (418)
.|.+|++|+.+.+... +.. +-...|..++.|+.+.+..+ +.......+.++++++.+.+.. .+..++ ..+
T Consensus 7 ~F~~~~~l~~i~~~~~------~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT------IKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETST--------E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECCC------eeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 4666777777776642 222 12333666667777777654 1221223456666677777754 333333 334
Q ss_pred hcCCCCcEEeccCccCcccCC-hhhhccccccEEeccC
Q 014826 92 CELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRG 128 (418)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~ 128 (418)
..+++|+.+.+..+ ...++ ..+.++ +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 55667777766543 22222 234555 666666554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.01 Score=30.35 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=8.1
Q ss_pred cceeeeCCCCCccCchh
Q 014826 74 LRYLNLRFPKIVKLPET 90 (418)
Q Consensus 74 L~~L~l~~~~l~~l~~~ 90 (418)
|++|++++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555544444433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.97 E-value=0.035 Score=26.29 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=5.9
Q ss_pred ccceeeeCCCCCccC
Q 014826 73 HLRYLNLRFPKIVKL 87 (418)
Q Consensus 73 ~L~~L~l~~~~l~~l 87 (418)
+|++|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.25 E-value=0.15 Score=39.79 Aligned_cols=102 Identities=11% Similarity=0.166 Sum_probs=50.9
Q ss_pred HhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhcccc
Q 014826 43 LFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLIN 120 (418)
Q Consensus 43 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 120 (418)
.|.++.+|+.+.+... +.......|.++++|+.+.+..+ +..++ ..+.++++|+.+.+... ...++ ..+..+.+
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence 4677888888888753 12222344777888888888774 55555 34667777888888652 22232 24566788
Q ss_pred ccEEeccCCcccccCCcccccccccceecc
Q 014826 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGE 150 (418)
Q Consensus 121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 150 (418)
|+.+.+..+ ....-...+.++ .|+.+.+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 888887654 222222334454 5665543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.33 E-value=0.0051 Score=59.49 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=45.3
Q ss_pred eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH----HHhhccc-cccceeeeCCCCCc-----cCch
Q 014826 20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI----LRNIKKL-VHLRYLNLRFPKIV-----KLPE 89 (418)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~l~-----~l~~ 89 (418)
+..+.|.+|.+..... ..+...+....+|..|+++++.+.+.. ...+... ..+++|++..|.++ .+.+
T Consensus 89 l~~L~L~~~~l~~~~~--~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGA--EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchH--HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 5666666666222221 224555666667777777776644321 1222222 44566666666644 2334
Q ss_pred hhhcCCCCcEEeccCccC
Q 014826 90 TLCELYNLEKLDISYCFN 107 (418)
Q Consensus 90 ~~~~l~~L~~L~l~~~~~ 107 (418)
.+...++++.++++-|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 454566666666666653
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.14 E-value=0.011 Score=50.18 Aligned_cols=83 Identities=17% Similarity=0.063 Sum_probs=40.4
Q ss_pred ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826 16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY 95 (418)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 95 (418)
.+.+.+.||++.++ ... +..-|+.++.|..|+++.+. ...+|..++....++.+++..|.....|..+...+
T Consensus 40 ~~kr~tvld~~s~r-----~vn--~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-----LVN--LGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhhhH-----HHh--hccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 34445555555544 222 22223444445555555444 33344445555555555555555555555555555
Q ss_pred CCcEEeccCcc
Q 014826 96 NLEKLDISYCF 106 (418)
Q Consensus 96 ~L~~L~l~~~~ 106 (418)
+++++++..+.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 55555555554
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.59 E-value=0.35 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=15.8
Q ss_pred cceeeEEeecCCCCCCCCccHHHHHH
Q 014826 17 VKRMRTLLISASGSDHSSLNAEIVEE 42 (418)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~ 42 (418)
|++|+.|+|++|. .+++..+..
T Consensus 1 c~~L~~L~l~~C~----~itD~gl~~ 22 (26)
T smart00367 1 CPNLRELDLSGCT----NITDEGLQA 22 (26)
T ss_pred CCCCCEeCCCCCC----CcCHHHHHH
Confidence 5678888888887 677766554
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.06 E-value=0.017 Score=55.91 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=22.3
Q ss_pred cCCCccEEEEecCCCCCcCCc----cccCCCCccEEEeccCCch
Q 014826 355 IMPHLSSLVIDSCYELKALPD----HIHQTTTLKRLWILNCGPL 394 (418)
Q Consensus 355 ~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~L~l~~c~~l 394 (418)
..+.++.++++.+....+.+. .......++.++++.++.-
T Consensus 402 ~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 402 SNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT 445 (478)
T ss_pred hcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence 566777777776643332221 1222227777777777643
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.53 E-value=0.55 Score=24.32 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.1
Q ss_pred CccEEecCCCC
Q 014826 49 SLRALDVSQVS 59 (418)
Q Consensus 49 ~L~~L~l~~~~ 59 (418)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.93 E-value=0.7 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=11.3
Q ss_pred cccceeeeCCCCCccCchh
Q 014826 72 VHLRYLNLRFPKIVKLPET 90 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~ 90 (418)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.93 E-value=0.7 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=11.3
Q ss_pred cccceeeeCCCCCccCchh
Q 014826 72 VHLRYLNLRFPKIVKLPET 90 (418)
Q Consensus 72 ~~L~~L~l~~~~l~~l~~~ 90 (418)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.02 E-value=0.11 Score=44.43 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=37.3
Q ss_pred ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826 45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124 (418)
Q Consensus 45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 124 (418)
..+...++||++.++ .-.+-..|+-+..|..|+++.+.+.-+|..+.....++.+++..|. ....|.+.++.+.++++
T Consensus 39 ~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 334445555555544 2122222333444444555554444444444444444444444333 34444444555555555
Q ss_pred eccCC
Q 014826 125 LNRGT 129 (418)
Q Consensus 125 ~l~~~ 129 (418)
+.-++
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 44444
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.71 E-value=3.2 Score=22.07 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=11.0
Q ss_pred ccceeeeCCCCCccCch
Q 014826 73 HLRYLNLRFPKIVKLPE 89 (418)
Q Consensus 73 ~L~~L~l~~~~l~~l~~ 89 (418)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.67 E-value=4.2 Score=39.52 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=39.1
Q ss_pred cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhcc--ccccceeeeCCCCCc
Q 014826 15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKK--LVHLRYLNLRFPKIV 85 (418)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~ 85 (418)
.+.+.+..++|++|+ +..++. +.......++|+.|+|++|...-.....+.+ ...|++|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNr--L~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR--LYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccch--hhchhh--hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 366677777788887 333333 5555667778888888877211111112322 334677777777744
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.51 E-value=6.8 Score=21.14 Aligned_cols=12 Identities=58% Similarity=0.728 Sum_probs=5.8
Q ss_pred CccEEecCCCCC
Q 014826 49 SLRALDVSQVSL 60 (418)
Q Consensus 49 ~L~~L~l~~~~~ 60 (418)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344555555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.98 E-value=6.2 Score=21.01 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=7.1
Q ss_pred cccceeeeCCCCCc
Q 014826 72 VHLRYLNLRFPKIV 85 (418)
Q Consensus 72 ~~L~~L~l~~~~l~ 85 (418)
.+|++|+++.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.66 E-value=10 Score=36.94 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=51.0
Q ss_pred CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh--cCCCccEEEeeCCCCCCC
Q 014826 199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT--SLTNLKSLGLSLCENCEQ 276 (418)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~ 276 (418)
.+-+.+..++++.|++- ..+.+.......|+|..|+|++|...-....++. ....|++|-+.+|+.++.
T Consensus 215 ~n~p~i~sl~lsnNrL~---------~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY---------HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhh---------chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 34467777888888764 3344444455678888888888832212222333 456788888888887776
Q ss_pred CCC--------CCCCCccchhc
Q 014826 277 LPP--------LGKLPSLEQLF 290 (418)
Q Consensus 277 ~~~--------l~~l~~L~~L~ 290 (418)
+.. -..+|+|..||
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Confidence 542 12466665554
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=32.74 E-value=37 Score=17.96 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.7
Q ss_pred eeEEeecCCC
Q 014826 20 MRTLLISASG 29 (418)
Q Consensus 20 L~~L~l~~~~ 29 (418)
|++|.|....
T Consensus 2 LKtL~L~~v~ 11 (26)
T PF07723_consen 2 LKTLHLDSVV 11 (26)
T ss_pred CeEEEeeEEE
Confidence 5566665554
No 89
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=23.42 E-value=13 Score=28.50 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=41.4
Q ss_pred CccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC--CcHHHHHhhccccccceeeeCCCC---Cc
Q 014826 11 PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS--LPTEILRNIKKLVHLRYLNLRFPK---IV 85 (418)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~---l~ 85 (418)
...|.+|+.+. .++..-. .+.+++ +...|..++.| ..+++.-. -+..+-..|.+++.|.. +++... ++
T Consensus 4 ~~~F~~~~~l~-~~i~~~d--ts~vt~--m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v~ 76 (120)
T PF03382_consen 4 SSMFANCTNLN-IDISNWD--TSNVTD--MSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNVT 76 (120)
T ss_pred HHHHHhchhcc-CCccccc--ccccee--HHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccccccccccc
Confidence 34566666665 5554433 334555 66777777766 22233211 12234445666777766 665543 23
Q ss_pred cCchhhhcCCCC
Q 014826 86 KLPETLCELYNL 97 (418)
Q Consensus 86 ~l~~~~~~l~~L 97 (418)
.+...+.++..|
T Consensus 77 ~~~~mF~~~~~l 88 (120)
T PF03382_consen 77 NMSNMFSGCSSL 88 (120)
T ss_pred cHHHHHhhhHHc
Confidence 333445555555
Done!